Query 005157
Match_columns 711
No_of_seqs 390 out of 2035
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 19:00:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2194 Aminopeptidases of the 100.0 8E-105 2E-109 908.9 45.8 618 34-702 4-632 (834)
2 PRK10199 alkaline phosphatase 100.0 1.6E-27 3.4E-32 256.1 28.7 261 86-367 30-345 (346)
3 PF04389 Peptidase_M28: Peptid 100.0 3.1E-29 6.6E-34 247.1 8.3 170 180-350 1-179 (179)
4 KOG2195 Transferrin receptor a 99.9 3.2E-22 7E-27 231.5 16.6 205 159-373 335-553 (702)
5 KOG3946 Glutaminyl cyclase [Po 99.8 9.4E-19 2E-23 178.8 19.6 249 82-362 46-334 (338)
6 COG2234 Iap Predicted aminopep 99.7 3.7E-17 8.1E-22 183.0 14.7 190 161-361 183-391 (435)
7 TIGR03176 AllC allantoate amid 99.5 5.8E-14 1.3E-18 156.5 15.1 127 87-247 3-141 (406)
8 PRK12890 allantoate amidohydro 99.5 3.2E-13 7E-18 150.5 16.7 128 85-246 7-145 (414)
9 PRK08262 hypothetical protein; 99.5 3.8E-13 8.2E-18 153.1 17.0 170 43-246 2-201 (486)
10 PRK09133 hypothetical protein; 99.5 5.8E-13 1.3E-17 151.1 18.0 150 82-261 32-203 (472)
11 PRK12891 allantoate amidohydro 99.5 4.2E-13 9.1E-18 149.8 16.2 129 83-245 6-146 (414)
12 TIGR01879 hydantase amidase, h 99.5 8.6E-13 1.9E-17 146.7 15.7 127 87-247 1-139 (401)
13 PRK09290 allantoate amidohydro 99.4 1.3E-12 2.9E-17 145.7 16.6 131 83-247 3-145 (413)
14 PRK13590 putative bifunctional 99.4 1.1E-12 2.4E-17 152.7 15.3 127 85-245 179-321 (591)
15 PRK13799 unknown domain/N-carb 99.4 1.3E-12 2.9E-17 152.1 14.6 127 85-245 179-321 (591)
16 PRK06133 glutamate carboxypept 99.4 4.5E-12 9.8E-17 141.4 17.7 145 85-262 35-197 (410)
17 PRK08596 acetylornithine deace 99.4 5.4E-12 1.2E-16 141.2 18.0 144 87-262 13-178 (421)
18 PRK12892 allantoate amidohydro 99.4 3.7E-12 8.1E-17 141.7 16.4 130 83-247 6-146 (412)
19 PRK12893 allantoate amidohydro 99.4 3.8E-12 8.2E-17 141.7 16.0 131 84-248 7-149 (412)
20 PRK07473 carboxypeptidase; Pro 99.4 9.4E-12 2E-16 137.4 18.2 149 84-263 8-174 (376)
21 TIGR01910 DapE-ArgE acetylorni 99.4 6E-12 1.3E-16 138.3 15.9 145 91-262 2-167 (375)
22 PRK08588 succinyl-diaminopimel 99.4 7.8E-12 1.7E-16 137.4 16.0 140 86-261 1-161 (377)
23 PRK07906 hypothetical protein; 99.3 1E-11 2.2E-16 139.0 14.7 130 90-248 2-155 (426)
24 PRK07338 hypothetical protein; 99.3 2.8E-11 6E-16 134.3 16.8 157 86-262 16-190 (402)
25 TIGR01880 Ac-peptdase-euk N-ac 99.3 3E-11 6.4E-16 134.1 16.8 147 83-260 5-173 (400)
26 PRK07907 hypothetical protein; 99.3 4.4E-11 9.5E-16 135.0 17.8 143 85-261 16-183 (449)
27 PRK09104 hypothetical protein; 99.3 4.3E-11 9.3E-16 135.6 17.1 146 85-261 15-190 (464)
28 PRK13013 succinyl-diaminopimel 99.3 6.4E-11 1.4E-15 132.4 18.1 152 86-261 13-187 (427)
29 PRK06446 hypothetical protein; 99.3 4E-11 8.6E-16 134.9 16.3 128 87-248 2-151 (436)
30 PF05450 Nicastrin: Nicastrin; 99.3 7.3E-11 1.6E-15 122.0 16.4 167 180-346 1-200 (234)
31 COG1363 FrvX Cellulase M and r 99.3 3.3E-10 7.1E-15 123.0 22.1 226 87-365 2-348 (355)
32 PRK13983 diaminopimelate amino 99.3 7.4E-11 1.6E-15 130.3 17.4 149 87-260 5-180 (400)
33 PF09940 DUF2172: Domain of un 99.3 1.5E-10 3.2E-15 124.6 18.6 240 83-366 56-308 (386)
34 PRK08201 hypothetical protein; 99.3 6.6E-11 1.4E-15 133.7 16.7 148 85-262 12-183 (456)
35 TIGR01893 aa-his-dipept aminoa 99.3 4.9E-11 1.1E-15 135.7 15.5 136 86-262 3-165 (477)
36 PRK04443 acetyl-lysine deacety 99.3 7.1E-11 1.5E-15 128.8 15.2 133 85-262 4-148 (348)
37 PRK07079 hypothetical protein; 99.2 1.1E-10 2.3E-15 132.6 16.3 148 84-260 14-189 (469)
38 KOG2275 Aminoacylase ACY1 and 99.2 1.5E-10 3.3E-15 125.5 15.2 120 111-260 49-190 (420)
39 TIGR01883 PepT-like peptidase 99.2 1.3E-10 2.9E-15 126.8 14.8 128 88-246 1-146 (361)
40 PRK05469 peptidase T; Provisio 99.2 1.6E-10 3.4E-15 128.8 15.5 127 87-245 2-185 (408)
41 PRK06915 acetylornithine deace 99.2 2.5E-10 5.4E-15 127.6 17.2 145 86-246 16-181 (422)
42 PRK13007 succinyl-diaminopimel 99.2 2.2E-10 4.8E-15 124.6 16.2 132 87-261 7-155 (352)
43 PRK07522 acetylornithine deace 99.2 2E-10 4.3E-15 126.5 15.5 141 87-261 4-165 (385)
44 PRK07318 dipeptidase PepV; Rev 99.2 1.8E-10 4E-15 130.7 15.4 128 85-248 12-167 (466)
45 PRK13381 peptidase T; Provisio 99.2 2.3E-10 5.1E-15 127.3 15.9 125 89-246 3-184 (404)
46 TIGR03106 trio_M42_hydro hydro 99.2 1.4E-09 3E-14 118.8 21.4 147 197-360 181-339 (343)
47 PRK06837 acetylornithine deace 99.2 3.2E-10 6.9E-15 127.2 16.8 146 85-245 18-184 (427)
48 PRK15026 aminoacyl-histidine d 99.2 3.4E-10 7.4E-15 129.1 17.2 138 84-262 7-171 (485)
49 TIGR01892 AcOrn-deacetyl acety 99.2 2.3E-10 4.9E-15 124.8 15.2 124 92-248 2-145 (364)
50 PRK00466 acetyl-lysine deacety 99.2 2.9E-10 6.3E-15 123.9 15.1 128 87-263 10-149 (346)
51 COG4882 Predicted aminopeptida 99.2 3.2E-10 6.9E-15 120.1 14.4 170 162-365 178-359 (486)
52 PRK07205 hypothetical protein; 99.2 4E-10 8.8E-15 127.0 16.3 127 85-247 9-164 (444)
53 PRK08652 acetylornithine deace 99.2 3.3E-10 7.2E-15 122.8 14.7 130 87-261 2-143 (347)
54 PF01546 Peptidase_M20: Peptid 99.2 1.5E-10 3.3E-15 114.0 10.9 165 183-361 1-188 (189)
55 TIGR01882 peptidase-T peptidas 99.2 3.5E-10 7.5E-15 126.3 15.2 128 87-245 3-187 (410)
56 PRK05111 acetylornithine deace 99.1 6.9E-10 1.5E-14 122.2 16.3 128 87-247 5-157 (383)
57 PRK08651 succinyl-diaminopimel 99.1 7.4E-10 1.6E-14 122.5 16.4 149 85-263 4-173 (394)
58 PRK06156 hypothetical protein; 99.1 1.3E-09 2.9E-14 125.3 18.8 138 85-261 44-213 (520)
59 TIGR03107 glu_aminopep glutamy 99.1 4.3E-09 9.2E-14 115.2 20.9 149 197-363 176-341 (350)
60 PRK13009 succinyl-diaminopimel 99.1 6.3E-10 1.4E-14 122.1 14.6 122 88-245 3-146 (375)
61 PRK09961 exoaminopeptidase; Pr 99.1 4.4E-09 9.6E-14 115.0 20.5 219 91-363 4-333 (344)
62 COG0624 ArgE Acetylornithine d 99.1 1.1E-09 2.5E-14 121.8 15.6 145 87-261 13-180 (409)
63 TIGR01886 dipeptidase dipeptid 99.1 8.4E-10 1.8E-14 125.4 14.6 127 86-248 12-166 (466)
64 PRK08554 peptidase; Reviewed 99.1 1.7E-09 3.8E-14 121.9 16.4 141 88-263 2-166 (438)
65 PRK13004 peptidase; Reviewed 99.1 2.4E-09 5.1E-14 119.1 16.2 122 86-246 14-158 (399)
66 PRK09864 putative peptidase; P 99.1 1.2E-08 2.6E-13 111.6 20.8 149 197-363 173-341 (356)
67 KOG2526 Predicted aminopeptida 99.1 6E-09 1.3E-13 112.7 17.7 196 161-361 192-415 (555)
68 TIGR01246 dapE_proteo succinyl 99.0 2.4E-09 5.3E-14 117.5 14.9 119 91-245 3-143 (370)
69 TIGR01902 dapE-lys-deAc N-acet 99.0 2.2E-09 4.8E-14 116.4 14.0 125 92-263 2-138 (336)
70 TIGR01900 dapE-gram_pos succin 99.0 5.3E-09 1.2E-13 115.4 15.2 134 93-262 2-170 (373)
71 TIGR01887 dipeptidaselike dipe 99.0 4.4E-09 9.4E-14 119.0 14.7 124 87-246 2-153 (447)
72 TIGR01891 amidohydrolases amid 99.0 1E-08 2.3E-13 112.4 15.6 132 91-262 3-151 (363)
73 TIGR03320 ygeY M20/DapE family 98.9 1.8E-08 3.8E-13 111.9 15.4 122 87-246 13-156 (395)
74 TIGR03526 selenium_YgeY putati 98.9 2.5E-08 5.5E-13 110.7 15.9 121 87-246 13-156 (395)
75 PRK08737 acetylornithine deace 98.9 1.7E-08 3.7E-13 111.2 14.2 119 86-247 5-144 (364)
76 COG4310 Uncharacterized protei 98.7 6.6E-08 1.4E-12 101.1 11.8 171 178-366 177-356 (435)
77 PLN02693 IAA-amino acid hydrol 98.7 1.9E-07 4.1E-12 105.4 16.0 120 89-246 49-182 (437)
78 PLN02280 IAA-amino acid hydrol 98.7 4.1E-07 8.9E-12 103.8 16.8 125 87-246 93-232 (478)
79 COG4187 RocB Arginine degradat 98.6 1.5E-07 3.1E-12 102.7 11.1 158 83-264 4-209 (553)
80 PF05343 Peptidase_M42: M42 gl 98.2 2.2E-06 4.8E-11 91.8 7.7 140 197-352 132-289 (292)
81 KOG2276 Metalloexopeptidases [ 98.2 1.6E-05 3.5E-10 86.4 12.1 142 85-246 14-179 (473)
82 KOG2657 Transmembrane glycopro 97.7 0.00032 7E-09 78.3 11.6 189 161-351 156-376 (596)
83 COG2195 PepD Di- and tripeptid 96.9 0.0024 5.1E-08 71.6 8.0 61 197-260 142-203 (414)
84 PF04114 Gaa1: Gaa1-like, GPI 96.4 0.16 3.6E-06 58.7 18.6 185 161-367 2-229 (504)
85 COG1473 AbgB Metal-dependent a 96.4 0.085 1.8E-06 59.1 15.6 134 93-260 14-163 (392)
86 PRK02256 putative aminopeptida 92.2 1.2 2.6E-05 51.0 11.7 46 195-244 256-301 (462)
87 PRK02813 putative aminopeptida 91.6 0.65 1.4E-05 52.7 8.7 141 195-347 230-415 (428)
88 PTZ00371 aspartyl aminopeptida 91.2 1.6 3.5E-05 50.1 11.4 160 195-361 247-453 (465)
89 KOG3566 Glycosylphosphatidylin 79.9 11 0.00025 43.8 10.2 93 161-264 119-228 (617)
90 PF06781 UPF0233: Uncharacteri 58.4 21 0.00045 31.8 5.0 30 40-69 27-56 (87)
91 PF10190 Tmemb_170: Putative t 49.2 1.8E+02 0.0039 26.8 9.6 49 421-470 32-80 (105)
92 PF00939 Na_sulph_symp: Sodium 48.3 2.8E+02 0.006 31.8 13.6 40 458-501 203-242 (471)
93 PRK08126 hypothetical protein; 43.2 5.7E+02 0.012 29.4 16.4 54 180-234 354-409 (432)
94 PRK08651 succinyl-diaminopimel 42.6 54 0.0012 36.2 6.5 56 306-366 338-393 (394)
95 PRK07522 acetylornithine deace 41.5 74 0.0016 34.9 7.4 75 275-364 310-384 (385)
96 PRK08596 acetylornithine deace 40.1 60 0.0013 36.5 6.4 57 306-367 363-419 (421)
97 PF07466 DUF1517: Protein of u 38.6 5.5E+02 0.012 27.9 18.3 62 183-250 225-286 (289)
98 PF05297 Herpes_LMP1: Herpesvi 36.0 12 0.00026 40.0 0.0 6 430-435 76-81 (381)
99 PRK07338 hypothetical protein; 35.2 62 0.0013 36.0 5.5 57 305-366 344-400 (402)
100 PRK07033 hypothetical protein; 33.5 7.8E+02 0.017 28.2 16.7 54 180-234 345-400 (427)
101 PRK06133 glutamate carboxypept 32.0 60 0.0013 36.4 4.8 58 305-366 352-409 (410)
102 PF12911 OppC_N: N-terminal TM 31.3 52 0.0011 26.0 3.0 35 651-685 8-42 (56)
103 PRK00159 putative septation in 28.4 96 0.0021 27.6 4.3 27 41-67 28-54 (87)
104 PRK13381 peptidase T; Provisio 27.2 90 0.0019 34.8 5.1 77 276-364 327-403 (404)
105 PRK07079 hypothetical protein; 26.7 1.8E+02 0.0038 33.3 7.4 58 307-367 401-458 (469)
106 TIGR01880 Ac-peptdase-euk N-ac 25.9 1.2E+02 0.0027 33.5 5.9 56 306-365 343-399 (400)
107 PF05421 DUF751: Protein of un 24.5 2.9E+02 0.0062 23.0 6.2 31 637-667 13-43 (61)
108 PRK13009 succinyl-diaminopimel 24.5 1.4E+02 0.003 32.7 5.8 53 306-364 322-374 (375)
109 PRK08652 acetylornithine deace 23.5 1.4E+02 0.0029 32.2 5.5 56 305-365 291-346 (347)
110 KOG2290 Rhomboid family protei 22.5 3.5E+02 0.0075 31.2 8.2 62 600-676 547-616 (652)
111 PRK08554 peptidase; Reviewed 22.3 1.3E+02 0.0028 34.2 5.2 54 305-364 384-437 (438)
112 PRK13983 diaminopimelate amino 21.9 2.1E+02 0.0045 31.5 6.7 50 306-361 349-398 (400)
113 PF10183 ESSS: ESSS subunit of 21.3 3.3E+02 0.0071 24.9 6.7 16 82-97 87-102 (105)
114 KOG1278 Endosomal membrane pro 20.0 6.9E+02 0.015 29.7 10.1 11 699-709 547-557 (628)
No 1
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=8.3e-105 Score=908.94 Aligned_cols=618 Identities=34% Similarity=0.583 Sum_probs=528.4
Q ss_pred CCccccchhhhHHHHHHHHHHHHHHHHHhhhhhcccCCCCCc--ccccCCCCCCHHHHHHHHHHHHhcCCCCCCCHHHH-
Q 005157 34 DSIHVSSAKRSGLVWTVVFATLICASYGVYYYQYEHMPPPLT--AEQAGRRGFSELEAMKHVKALTQLGPHAVGSDALD- 110 (711)
Q Consensus 34 ~~~~~~~~~r~~~~~l~~~ll~~~~~~~v~~~~~~~lP~~~~--~~~~~~~~fs~erA~~~L~~L~~igpr~~GS~~~~- 110 (711)
+++...+++|....++..+..++...+.++ .+.++|.|++ .++..+++|+++||++++.+++++|||++||++|+
T Consensus 4 ~~~~~~~~~r~~~~~~~~~~f~~~~~~~~~--~~~~~~~pl~~~~e~~~~~~f~~~rA~~~l~~ls~~G~~~~gS~~ne~ 81 (834)
T KOG2194|consen 4 DKSFRRKRKRNGAPCLAHLIFLLSIAIVLY--LFDHLPEPLTQPQEQTLPSQFSEARALKDLLSLSAAGPHPVGSDNNEM 81 (834)
T ss_pred hhHhhhhhhhccchHHHHHHHHHHHHHHHH--HHhhccccCCCcchhcCchhhHHHHHHHHHHHHHhcCCcccCchhhHH
Confidence 344555666666666655555444433333 4454555544 44555789999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhccccCCc-ceEEEEeeeccCCCcccccccccCccccccccceEEEEEcCCCCCCCCCCeEEEeecCc
Q 005157 111 RALQYVLAASQKIKESKHWE-ADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHID 189 (711)
Q Consensus 111 ~a~~yL~~~l~~ig~~~~~~-~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~D 189 (711)
.+++|+++++++++++++.+ .++|+|.+... |. + ..++++..|++++||++|+.||+ ++++.+++++||+|
T Consensus 82 ~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~s-g~-~----~~~~~~~~Y~~i~NIvVki~~k~--~~~~~~lLlnaHfD 153 (834)
T KOG2194|consen 82 HASSFILKEVNKIRKGSQSDLYDMEVDLQSAS-GS-F----ILEGMTLVYQNISNIVVKISPKN--GNDKNALLLNAHFD 153 (834)
T ss_pred HHHHHHHHHHHHHHhhhhcchhhheeceeecc-ce-e----eehhhhheeeeeeeEEEecCCCC--CCccceeeeecccc
Confidence 89999999999999877653 46777665432 11 0 23578899999999999999984 23456999999999
Q ss_pred ccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeecCcCCCCcc
Q 005157 190 TVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSA 269 (711)
Q Consensus 190 Sv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~~G~gG~~~ 269 (711)
|||++|||+||++|||+|||++|++.+..+.++|+|+|+||++||.+++|||+|++||||+++++++||||++|+||++.
T Consensus 154 Svpt~~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~ka~INLea~GsGGrei 233 (834)
T KOG2194|consen 154 SVPTGPGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESGLLGSHAFITQHPWSKNIKAVINLEAAGSGGREI 233 (834)
T ss_pred ccCCCCCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcccchhhhcccceecChhhhhhheEEeccccCccccee
Confidence 99999999999999999999999999987888999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHHhhcCCceEEEEeeeCCCCCCCCCCCCcCCCCHHHH
Q 005157 270 LFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSL 349 (711)
Q Consensus 270 lfqtg~~~~l~~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sL 349 (711)
+||+||++|+++.|.++++||+++++++|+||+|+|||||||++|++++|+||+|+++..|++.|||++|.++++.++++
T Consensus 234 LFQagp~~wl~k~Y~~~~phPf~stlgee~Fq~g~IpSdTDfrif~eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~~gs~ 313 (834)
T KOG2194|consen 234 LFQAGPNHWLLKAYLQAAPHPFASTLGEELFQSGIIPSDTDFRIFREYGHLPGLDMAFVKNGYVYHTKYDGIQYIPPGSL 313 (834)
T ss_pred EEecCCchHHHHHHHhhCCCchhhhhHHHhhhcCcCccccchHHHHHhCCcccceeeeeeccceEEeecccccccCcchh
Confidence 99999977999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCcccccCCCCCCeEEecccCceEEEeechhHHHHHHHHHHHHHHHHHHHHHhcchh
Q 005157 350 QHLGENMLDFLLQTASSTSIPKGNAVEEEGKTVHETGVYFDILGKYMVLYHQHFANMLHNSVILQSLLIWTASLVMGGYP 429 (711)
Q Consensus 350 q~~g~~vl~ll~~La~~~~l~~~~~~~~~~~~~~~~~VyFd~lG~~~v~y~~~~~~~l~~~v~~~~l~~~~~~~~~~~~~ 429 (711)
||+|||++++++.++|+ ++.+ .++.+++ +||||++|++|+.|+++++++||+.+ .+.++ ....+.+.+
T Consensus 314 q~tGen~L~~v~~lan~-el~~------~~~~~~g-~vyfdv~g~~~~~y~~~~~~iLNi~i---~~~i~-l~~~~~g~~ 381 (834)
T KOG2194|consen 314 QHTGENILALVRSLANS-ELDN------STERSKG-TVYFDVVGKYFLAYSESTGVILNITI---CISIW-LMSLRSGSS 381 (834)
T ss_pred hhhhhHHHHHHHHHhch-hhcc------ccccCCC-ceehhhhhhhhheeehhhhhhhhhhh---hhhhh-hhhhcccch
Confidence 99999999999999998 5432 3445666 99999999999999999999999332 22223 233344444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 005157 430 AAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKAYLANQYSK 509 (711)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~~~~~~msw~s~~~l~~gly~~p~~~g~~~~~~~~~~~~~~~~~~~~~~ 509 (711)
.++.+.+.|+.+++++++++++++++|++++.+ +.+|+||++||+++|||.||+++|+.++|.++....++ +
T Consensus 382 ~~~~f~~~~~~~i~s~~~~~~l~~~~a~~l~~v-~l~~sw~s~p~l~~~ly~~p~~~gl~~~~~~y~~~~~~-------~ 453 (834)
T KOG2194|consen 382 QLGKFILACLLQILSIVVAIGLPVLVALFLDWV-GLPLSWFSNPWLLLGLYYLPSLFGLAILQALYAKRSKR-------H 453 (834)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhHHHHHHHhhcc-cccceeecchHHHHHHHHhHHHHHhhHHHHHHHhhccc-------c
Confidence 688999999999999999999999999999987 46999999999999999999999999999873221111 1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhccCcCCCchHHHHHH
Q 005157 510 GMQLSPVHQAALVKLEAERWLFKSGFLQWLILLALGNYYKIGSTYMALVWLVPPAFAYGFLEATLTPVRLTRPLKLATLL 589 (711)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~t~~~i~S~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 589 (711)
+. ...+.+++++|+ +|+++++++|++||||+|+++++.+++++++ +++.....+.++..|..+++
T Consensus 454 ~~----------~~~~~~ql~~h~---~l~~l~~~~t~y~I~S~y~~~~~~~~~v~~~--~~~~~~~l~~~~~~~~~~~~ 518 (834)
T KOG2194|consen 454 SL----------EYLQHDQLLLHS---LLSILLIIMTYYGIRSAYLPLLLLLFYVISY--LLNTLTILHLCGTLYLITLL 518 (834)
T ss_pred cc----------chhhHHHHHHHH---HHHHHHHHheecccchhHHHHHHHHHHHHHH--HHhhceeeccCCceeeeeee
Confidence 11 123567788886 7788889999999999999999999999985 55677888889999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Q 005157 590 LGLAVPVLVSAGNIIRLANVLVATLVRFDRNPGGTPEWLGNVIFAVVIAVVSCLTLVYLLSYVHLSGAKGPIAFASFILV 669 (711)
Q Consensus 590 ~~~~~P~~~~~~~~~~~~~~~~p~~gR~~~~~~~~Pd~~~d~~ia~~~a~~~~l~~~~l~p~~~~~~~~~~~~~~l~~~~ 669 (711)
+||+.|+.+.+|.++.++.+|+|||||+|.+. ||| .+||.++++++.+.++|++|++|++|+++.|+.+++.++
T Consensus 519 i~~~~p~~~~ay~~~~~~~~fipm~Gr~g~~~--nPd----~~i~~~~~~~~~l~~~f~i~l~~~fr~~~~i~~~l~~I~ 592 (834)
T KOG2194|consen 519 ICQVGPFLFAAYSTYSLVRTFIPMMGRFGNAS--NPD----LSISFLNAFGANLIVGFLIPLVHLFRRSKSIILGLFGIT 592 (834)
T ss_pred eeehHhHHHHHHHHHHHHHeeeccccccCCCC--Cch----HHHHHHHHHHHHhhHHHHHHHHHHHcCCchhHHHHHHHH
Confidence 99999999999999999999999999999755 885 999999999999999999999999999999999999998
Q ss_pred HHHHHHHhcCCCCCCCcCcc-ccceE------EEeecCce
Q 005157 670 GLSIIMVSSGIIPPFSEETA-RAVNV------NCAHCGCK 702 (711)
Q Consensus 670 ~~s~~l~~~~~~fPy~~~~~-~~~~~------~~~~~~~~ 702 (711)
.+++.+++|.++|||+++++ +++++ +|++||+.
T Consensus 593 ~~~~~i~~T~~~fPy~~~~~~~r~~~lH~~rtf~~~~~~~ 632 (834)
T KOG2194|consen 593 AVILIIASTSIGFPYRPKTTVQRVPVLHVRRTFYDRDGTS 632 (834)
T ss_pred HHHHHHHhcCCcCCccccccceeEEEEecccceecccCce
Confidence 88888889999999998775 45554 45677764
No 2
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.96 E-value=1.6e-27 Score=256.12 Aligned_cols=261 Identities=19% Similarity=0.248 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccce
Q 005157 86 ELEAMKHVKALTQ-LGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (711)
Q Consensus 86 ~erA~~~L~~L~~-igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (711)
.+-|.+++++|+. +++|.+||+++.++++||.++|+++| ++++.+.|..........+ ..........|
T Consensus 30 ~~~a~~~~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG------~~v~~q~f~~~~~~~~~~g----~~~~~~~~g~n 99 (346)
T PRK10199 30 GDFANTQARHIATFFPGRMTGSPAEMLSADYLRQQFQQMG------YQSDIRTFNSRYIYTARDN----RKNWHNVTGST 99 (346)
T ss_pred cchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCC------CceEeeeccccceeecccc----cccccCCccce
Confidence 5667788888876 88999999999999999999999998 3455444332100000000 00001124689
Q ss_pred EEEEEcCCCCCCCCCCeEEEeecCcccCC--------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEe
Q 005157 165 IVLRILPKYASEAGENAILVSSHIDTVSA--------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFN 230 (711)
Q Consensus 165 Vi~~i~g~~~~~~~~~~Vll~aH~DSv~~--------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~ 230 (711)
||++++|+ .++.|+++||+|||+. .|||+||++|||+|||++|.|++. +++++|.|+++
T Consensus 100 VIa~~~G~-----~~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~--~~~~~I~fv~~ 172 (346)
T PRK10199 100 VIAAHEGK-----APQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV--PTEYGIRFVAT 172 (346)
T ss_pred EEEEECCC-----CCCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC--CCCCcEEEEEE
Confidence 99999874 3478999999999852 479999999999999999999864 57889999999
Q ss_pred CCCCCCCcchHHHHhcCCC--cCCceEEEEeecCcCCCCccccccCC-CHHHH----H-HHHHHccCCCCcccc-----c
Q 005157 231 TGEEEGLNGAHSFVTQHPW--STTIRVAVDLEAMGIGGRSALFQAGP-NLWAV----E-NFAAVAKYPSGQIIG-----Q 297 (711)
Q Consensus 231 ~~EE~gl~GS~~f~~~h~~--~~~v~a~inLD~~G~gG~~~lfqtg~-~~~l~----~-~~~~~a~~p~~~~l~-----~ 297 (711)
++||.|+.||+.|+++.+. .+++.++||+|+++.+ ....+..|. ++..+ + ...+.+ ...|..+. +
T Consensus 173 ~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~-d~~~~~~g~~~~~~~~~~~~d~~~~~a-~~~g~~~~~~~~~~ 250 (346)
T PRK10199 173 SGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVG-DKLYFNSGVNTPEAVRKLTRDRALAIA-RRHGIAATTNPGLN 250 (346)
T ss_pred CCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCC-CceEEecCCCcHHHHhHHHHHHHHHHH-HHcCCccccCCCcc
Confidence 9999999999999976543 4689999999999875 344455453 22211 1 111221 11222221 1
Q ss_pred ccccCCCCCCCCchHHHhhcCCceEEEEeee-------------------CCCCCCC-CCCCCcCCCCH-------HHHH
Q 005157 298 DLFASGVFETATDFQVYTEVAGLSGLDFAYT-------------------DKSAVYH-TKNDRLDLLKP-------GSLQ 350 (711)
Q Consensus 298 ~~f~~g~ips~TD~~~F~~~~GIPgld~a~~-------------------~~~~~YH-T~~Dt~d~i~~-------~sLq 350 (711)
..|..| ....|||.+|.+ .|||.+.+... ..+..|| |.+|+.++++. ..+.
T Consensus 251 ~~~p~g-~~~rSDH~~F~~-~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l~~~~pgri~~~~~ 328 (346)
T PRK10199 251 KNYPKG-TGCCNDAEVFDK-AGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCR 328 (346)
T ss_pred ccccCC-CcCCcccHHHHh-cCCCeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHHHHhcchHHHHHHH
Confidence 223334 346799999999 99999988421 2245689 79999999986 4566
Q ss_pred HHHHHHHHHHHHHhcCC
Q 005157 351 HLGENMLDFLLQTASST 367 (711)
Q Consensus 351 ~~g~~vl~ll~~La~~~ 367 (711)
...+.++.++.+|++..
T Consensus 329 ~~~~~~~~~~~~~~~~~ 345 (346)
T PRK10199 329 DVVRIMLPLVKELAKAS 345 (346)
T ss_pred hHHHHHHHHHHHHhccC
Confidence 77889999999999863
No 3
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.96 E-value=3.1e-29 Score=247.09 Aligned_cols=170 Identities=31% Similarity=0.488 Sum_probs=130.2
Q ss_pred CeEEEeecCcccC------CCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcchHHHHhc-CCCcCC
Q 005157 180 NAILVSSHIDTVS------AGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ-HPWSTT 252 (711)
Q Consensus 180 ~~Vll~aH~DSv~------~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~GS~~f~~~-h~~~~~ 252 (711)
+.|+++|||||++ .++||+||++|||+|||++|.|++.+.+++++|+|+|+++||.|+.||++|+++ +.+.++
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~~~~~~~~~ 80 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVEHDHEELDN 80 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHHHHHCHHHH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHHhhhccccc
Confidence 3699999999988 899999999999999999999999777889999999999999999999999963 345689
Q ss_pred ceEEEEeecCcCCCCccccccCC-CHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHHhhcCCceEEEEeeeC-C
Q 005157 253 IRVAVDLEAMGIGGRSALFQAGP-NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTD-K 330 (711)
Q Consensus 253 v~a~inLD~~G~gG~~~lfqtg~-~~~l~~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~~GIPgld~a~~~-~ 330 (711)
+.++||+|++|.+++....+..+ .++.++.+.+...++.......+.......+..+||.+|.. .|||++.+.... .
T Consensus 81 ~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sD~~~F~~-~gip~~~~~~~~~~ 159 (179)
T PF04389_consen 81 IAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTFGGSDHYPFSK-AGIPAVTLSSTDGY 159 (179)
T ss_dssp EEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHHCHTSSECEEEESSTTSSTCHHHHT-TT-EEEEEEESSSS
T ss_pred ceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhhcccccccccccCCCCCCCcHhhhc-CCEeEEEEEecCCC
Confidence 99999999999988777766554 23433443332222333222233332233456899999997 999999999887 6
Q ss_pred CCCCCCCCCCcCCCCHHHHH
Q 005157 331 SAVYHTKNDRLDLLKPGSLQ 350 (711)
Q Consensus 331 ~~~YHT~~Dt~d~i~~~sLq 350 (711)
.+.|||+.||++++|+++||
T Consensus 160 ~~~~Ht~~Dt~~~~~~~~l~ 179 (179)
T PF04389_consen 160 NPYYHTPEDTPDNLDPDTLQ 179 (179)
T ss_dssp GTTTTSTT-SGGGC-HHHH-
T ss_pred CCCCCCcccChhhcCCccCC
Confidence 78999999999999999987
No 4
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=99.88 E-value=3.2e-22 Score=231.45 Aligned_cols=205 Identities=19% Similarity=0.269 Sum_probs=160.5
Q ss_pred ccccceEEEEEcCCCCCCCCCCeEEEeecCcccCCCCCCCCChhHHHHHHHHHHHHHh---cCCCCCCcEEEEEeCCCCC
Q 005157 159 YSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQ---WAHEFKNAVIFLFNTGEEE 235 (711)
Q Consensus 159 Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~---~~~~~~~~I~flf~~~EE~ 235 (711)
-..+.||+++|+|. ++++++|++++|.|||. +||.|+++|+|.++|++|.+.. .|++|+|+|+|++|+|||.
T Consensus 335 ~~ki~NIig~I~Gs---~epD~~ViigahrDSw~--~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEf 409 (702)
T KOG2195|consen 335 ETKIQNIIGKIEGS---EEPDRYVIIGAHRDSWT--FGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEEF 409 (702)
T ss_pred eeeeeeEEEEEecC---cCCCeEEEEeccccccc--cCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchhc
Confidence 35789999999996 47999999999999997 7899999999999999999864 6799999999999999999
Q ss_pred CCcchHHHHhcCC--CcCCceEEEEeecCcCCCCccccccCCCHHHHHHHHH---HccCCCCcccccccccCCCCCCCCc
Q 005157 236 GLNGAHSFVTQHP--WSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAA---VAKYPSGQIIGQDLFASGVFETATD 310 (711)
Q Consensus 236 gl~GS~~f~~~h~--~~~~v~a~inLD~~G~gG~~~lfqtg~~~~l~~~~~~---~a~~p~~~~l~~~~f~~g~ips~TD 310 (711)
|+.||..|++++. ...++.+++|+|+++.++...-.+ .+|.+.+...+ ..+.|........+ ...+++||
T Consensus 410 GliGStE~~E~~~~~L~~~av~yin~d~~~~~~~~l~~~--~~PlL~~li~~~~k~~~~p~~~~~~~~v---~~~g~~Sd 484 (702)
T KOG2195|consen 410 GLLGSTEWAEEYLKNLKSRAVVYINVDNAVLGDYTLHVK--TTPLLTDLIEEAAKSVLSPDKGDQSNRV---LSLGGGSD 484 (702)
T ss_pred cccccHHHHHHHHHHhhheeEEEEeccccccCCceeEEe--cCccHHHHHHHHHhccCCCCccccceeE---eccCCCCc
Confidence 9999999998875 356889999999999875333333 34444444433 33455433221111 12378999
Q ss_pred hHHHhhcCCceEEEEeeeCCCCCCCCCCCCcCCC----CH--HHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 005157 311 FQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLL----KP--GSLQHLGENMLDFLLQTASSTSIPKGN 373 (711)
Q Consensus 311 ~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i----~~--~sLq~~g~~vl~ll~~La~~~~l~~~~ 373 (711)
|.+|..+.|||+++++|...-+.|||.+||++.+ |+ ..+..++.+....+..+++++.+|.+.
T Consensus 485 ~~~F~~~~GIpsv~~~f~~~yP~yhs~~dt~~~~~k~~D~~~~~~~~~a~~~~~~~l~l~~d~llPfd~ 553 (702)
T KOG2195|consen 485 YASFLQFAGIPSVDFAFNRTYPFYHSTYDTYEWLDKLLDPKFKQHLAAAGVLGLELLILADDPLLPFDI 553 (702)
T ss_pred chhhccccCcceeeeeecCCcceeecccCcHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCccccCcH
Confidence 9999999999999999999888999999996554 33 444456667777777788877777653
No 5
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9.4e-19 Score=178.78 Aligned_cols=249 Identities=18% Similarity=0.258 Sum_probs=184.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccc
Q 005157 82 RGFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSD 161 (711)
Q Consensus 82 ~~fs~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~ 161 (711)
+.-+..|.++.|.-+-. ||.+||+++.++++||.+.++.++ +.+|.|.|.... + ..+.+
T Consensus 46 ~~s~~~~~~~~L~p~lv--~Rvpgs~g~~~vr~~i~~~l~~l~------w~ve~~~f~~~t--------p-----~g~~~ 104 (338)
T KOG3946|consen 46 PDSDWNRLWENLLPILV--PRVPGSPGSRQVRRFIIQHLRNLG------WAVETDAFTDNT--------P-----LGTRN 104 (338)
T ss_pred CCCCHHHHHHhhhhhhc--cccCCCCccHHHHHHHHHHHHhcC------ceeeeccccccC--------c-----ceeee
Confidence 45577788888776653 899999999999999999999996 788988776531 1 12457
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecCcccCCC----CCCCCChhHHHHHHHHHHHHHhc----CCCCCCcEEEEEeCCC
Q 005157 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSAG----EGAGDCSSCVAVMLELARVMSQW----AHEFKNAVIFLFNTGE 233 (711)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~s----pGA~Dd~sGva~~LE~ar~L~~~----~~~~~~~I~flf~~~E 233 (711)
..|||+++.+. ..+.+++.|||||.-.. .||.|.+..||.|+++++.|.+. ...++-++.++|+|||
T Consensus 105 f~nii~tl~~~-----A~r~lVlachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGE 179 (338)
T KOG3946|consen 105 FNNLIATLDPN-----ASRYLVLACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGE 179 (338)
T ss_pred eeeEEEecCCC-----cchheeeecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccH
Confidence 89999999764 56889999999997432 68999999999999999999863 2345678999999999
Q ss_pred CC--------CCcchHHHHhcC------C-----CcCCceEEEEeecCcCCCCccc--cccCCCHHHHHH--H----HH-
Q 005157 234 EE--------GLNGAHSFVTQH------P-----WSTTIRVAVDLEAMGIGGRSAL--FQAGPNLWAVEN--F----AA- 285 (711)
Q Consensus 234 E~--------gl~GS~~f~~~h------~-----~~~~v~a~inLD~~G~gG~~~l--fqtg~~~~l~~~--~----~~- 285 (711)
|. .+.||++.+++. + ..+++...+-+|-.|+.++..- |.. ++.|..+. . .+
T Consensus 180 EAf~eW~p~DSlYGsRhLA~~~~sw~~~~~r~~~~ld~idl~vLldllga~~p~f~~~~~~-t~~wF~Rl~~iE~~l~~~ 258 (338)
T KOG3946|consen 180 EAFEEWGPEDSLYGSRHLAAKWESWPHSGIRGDLLLDGIDLLVLLDLLGAPNPTFYNFFPN-TDRWFHRLQSIEGELALL 258 (338)
T ss_pred HHHhhcCCccccchHHHHHHHHhccCCCCCccccccccchHhhhHHHhcCCChhHhhcCcc-hHHHHHHHHHHHHHHHHH
Confidence 93 578999999761 2 1256777888888888776531 221 23343221 1 11
Q ss_pred --HccCCCCcccccccccCCCCC--CCCchHHHhhcCCceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Q 005157 286 --VAKYPSGQIIGQDLFASGVFE--TATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLL 361 (711)
Q Consensus 286 --~a~~p~~~~l~~~~f~~g~ip--s~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~ 361 (711)
...++. -...|+.|... -++||.+|.. +|+|.+.+.......+|||+.|+..++|..+..|.+..+--++.
T Consensus 259 g~l~s~r~----~~~~Fq~~~~~~~veDDHiPFlr-rgVPVLHlI~~pFPsvWHt~dD~e~nldy~tt~~~~lilr~Fv~ 333 (338)
T KOG3946|consen 259 GLLASHRL----PPRYFQPGGLSSVVEDDHIPFLR-RGVPVLHLIPVPFPSVWHTPDDNERNLDYATTDNLALIIRVFVA 333 (338)
T ss_pred HHHHhccC----CchhccccCccccccCCcchhhh-cCCceEEecCCCCcccccCccchhhcCCchhHHHHHHHHHHHHH
Confidence 112221 11234433211 3789999999 99999999988888999999999999999999998887766655
Q ss_pred H
Q 005157 362 Q 362 (711)
Q Consensus 362 ~ 362 (711)
+
T Consensus 334 e 334 (338)
T KOG3946|consen 334 E 334 (338)
T ss_pred H
Confidence 4
No 6
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.72 E-value=3.7e-17 Score=183.03 Aligned_cols=190 Identities=26% Similarity=0.340 Sum_probs=135.3
Q ss_pred ccceEEEEEcCCCC-------CCCCCCeEEEeecCcccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q 005157 161 DLNHIVLRILPKYA-------SEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGE 233 (711)
Q Consensus 161 ~~~NVi~~i~g~~~-------~~~~~~~Vll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~E 233 (711)
...|++.++++... ....++.+++++|+|+++.+|||+||++|+|++||++|.|++. +|+++|.|+++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~--~p~~~v~f~~~~aE 260 (435)
T COG2234 183 TSKNVAATISGSSQIIEAIIGTAHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN--PPKRTVRFVAFGAE 260 (435)
T ss_pred EEEEEeeeeecccccceEEEeccCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC--CCCceEEEEEecch
Confidence 45566666655310 0246789999999999999999999999999999999999985 49999999999999
Q ss_pred CCCCcchHHHHhcCC--CcCCceEEEEeecCcCCCCcccccc---CCC--HHHHHHHHHHccCCCCcccccccccCCCCC
Q 005157 234 EEGLNGAHSFVTQHP--WSTTIRVAVDLEAMGIGGRSALFQA---GPN--LWAVENFAAVAKYPSGQIIGQDLFASGVFE 306 (711)
Q Consensus 234 E~gl~GS~~f~~~h~--~~~~v~a~inLD~~G~gG~~~lfqt---g~~--~~l~~~~~~~a~~p~~~~l~~~~f~~g~ip 306 (711)
|.|+.||++|++++. ..+++.+++|+||.|..++...++. +.+ +.......+...++.... +. ....
T Consensus 261 E~Gl~GS~~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~ 334 (435)
T COG2234 261 ESGLLGSEAYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVDPS-----TV-QDFD 334 (435)
T ss_pred hhcccccHHHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhcccc-----cc-CCCC
Confidence 999999999996665 3577888999999999763222221 111 112222222212222111 11 1234
Q ss_pred CCCchHHHhhcCCceEEEEeeeCC-----CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Q 005157 307 TATDFQVYTEVAGLSGLDFAYTDK-----SAVYHTKNDRLDLLKPGSLQHLGENMLDFLL 361 (711)
Q Consensus 307 s~TD~~~F~~~~GIPgld~a~~~~-----~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~ 361 (711)
..+||.+|.. +|+|++.+..... ..++||..|| ++ +..+++..+..+.+...
T Consensus 335 ~~sd~~~f~~-~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~-d~~~~~~~~~~~~~~~~ 391 (435)
T COG2234 335 PRSDHYPFTE-AGIPSLFLFSGAPGGVEAVAWGHTAADT-DK-DLSTLDQHGDAVAATLV 391 (435)
T ss_pred CCCcchhhhh-cCCcceeeeecCCccccccccccccccc-cc-chhhhcccchhhhhhhh
Confidence 5799999998 9999998875433 3589999999 88 88888877755444433
No 7
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.54 E-value=5.8e-14 Score=156.48 Aligned_cols=127 Identities=20% Similarity=0.141 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccc
Q 005157 87 LEAMKHVKALTQLGP-------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIY 159 (711)
Q Consensus 87 erA~~~L~~L~~igp-------r~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y 159 (711)
.|.+++|.+|.+||. |...|+++.++++|+.++++++| +++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~G------l~v~~D----------------------- 53 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESG------LETRFD----------------------- 53 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcC------CEEEEc-----------------------
Confidence 578999999998852 66679999999999999999998 455553
Q ss_pred cccceEEEEEcCCCCCCCCCCeEEEeecCcccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC---
Q 005157 160 SDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEG--- 236 (711)
Q Consensus 160 ~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~g--- 236 (711)
...|++++++|. .++.++|++++|+||||. .|..|+..||++.||++|.|++.+.+|+++|.+++|.+||.+
T Consensus 54 -~~gN~~~~~~g~---~~~~~~i~~gsHlDtv~~-gG~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~ 128 (406)
T TIGR03176 54 -DVGNLYGRLVGT---EFPEETILTGSHIDTVVN-GGNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFP 128 (406)
T ss_pred -CCCcEEEEecCC---CCCCCeEEEeccccCCCC-CCccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCC
Confidence 457999999986 246689999999999995 688999999999999999999998899999999999999986
Q ss_pred --CcchHHHHhcC
Q 005157 237 --LNGAHSFVTQH 247 (711)
Q Consensus 237 --l~GS~~f~~~h 247 (711)
+.||+.+..+.
T Consensus 129 ~~~~Gs~~~~g~~ 141 (406)
T TIGR03176 129 YVFWGSKNIFGLA 141 (406)
T ss_pred cccccHHHHhCCC
Confidence 99999998544
No 8
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.50 E-value=3.2e-13 Score=150.54 Aligned_cols=128 Identities=18% Similarity=0.187 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHHhcC------CCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCcccc
Q 005157 85 SELEAMKHVKALTQLG------PHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLI 158 (711)
Q Consensus 85 s~erA~~~L~~L~~ig------pr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~ 158 (711)
+.+++++++.++.+|+ .|+..|+++.++.+||.++|+++| ++++.+
T Consensus 7 ~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G------~~~~~~---------------------- 58 (414)
T PRK12890 7 NGERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAG------LEVRRD---------------------- 58 (414)
T ss_pred CHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCC------CEEEEc----------------------
Confidence 5689999999999875 356778888899999999999998 344431
Q ss_pred ccccceEEEEEcCCCCCCCCCCeEEEeecCcccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC---
Q 005157 159 YSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE--- 235 (711)
Q Consensus 159 Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~--- 235 (711)
...|++++++|+ ..+.+.|++++|+|+||. .|+.|+++|+|++|++++.|.+.+.+++++|.|+++.+||.
T Consensus 59 --~~~nlia~~~g~---~~~~~~l~~~~H~DtVp~-~g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~ 132 (414)
T PRK12890 59 --AAGNLFGRLPGR---DPDLPPLMTGSHLDTVPN-GGRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRF 132 (414)
T ss_pred --CCCcEEEEeCCC---CCCCCEEEEeCcccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeccccccc
Confidence 235999999764 134578999999999995 57899999999999999999988778899999999999997
Q ss_pred --CCcchHHHHhc
Q 005157 236 --GLNGAHSFVTQ 246 (711)
Q Consensus 236 --gl~GS~~f~~~ 246 (711)
++.||+.+.+.
T Consensus 133 ~~~~~G~~~~~~~ 145 (414)
T PRK12890 133 GPSMIGSRALAGT 145 (414)
T ss_pred CCccccHHHHHcc
Confidence 66899888743
No 9
>PRK08262 hypothetical protein; Provisional
Probab=99.49 E-value=3.8e-13 Score=153.15 Aligned_cols=170 Identities=16% Similarity=0.206 Sum_probs=127.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcccCCCCCcccccCCCCCCHHHHHHHHHHHHhcCCCCCCCHHH-------HHHHHH
Q 005157 43 RSGLVWTVVFATLICASYGVYYYQYEHMPPPLTAEQAGRRGFSELEAMKHVKALTQLGPHAVGSDAL-------DRALQY 115 (711)
Q Consensus 43 r~~~~~l~~~ll~~~~~~~v~~~~~~~lP~~~~~~~~~~~~fs~erA~~~L~~L~~igpr~~GS~~~-------~~a~~y 115 (711)
|++++.++.+++++.+++.+++.+|++..-.+++ -.+-..+.+++.+.|++|.+|.. +.+.+++ .+..+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~L~~lv~i~S-~s~~~~~~~~~~~~~~~~~~ 78 (486)
T PRK08262 2 RRILLGLLALLLLLAAVLAVRTFRFKSRQIDVPA--VAPVAVDEDAAAERLSEAIRFRT-ISNRDRAEDDAAAFDALHAH 78 (486)
T ss_pred cchHHHHHHHHHHHHHhhhheeEEcccCCCCccc--cCCCcCCHHHHHHHHHHhcccce-eccCCCCcccHHHHHHHHHH
Confidence 5566777777777888889999988765544432 22356889999999999999743 2232211 357888
Q ss_pred HHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEEEEEcCCCCCCCCCCeEEEeecCcccCC--
Q 005157 116 VLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA-- 193 (711)
Q Consensus 116 L~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~-- 193 (711)
|.+++++++. +++... . +..|+++.++|+ .+..+.|++.+|+|+||.
T Consensus 79 L~~~~~~~g~------~~~~~~--~--------------------~~~~vv~~~~g~---~~~~~~ill~gH~DvVp~~~ 127 (486)
T PRK08262 79 LEESYPAVHA------ALEREV--V--------------------GGHSLLYTWKGS---DPSLKPIVLMAHQDVVPVAP 127 (486)
T ss_pred HHHhChhhhc------eeEEEE--E--------------------CCccEEEEEECC---CCCCCeEEEECcccccCCCC
Confidence 8888887762 233221 0 125788888764 123378999999999974
Q ss_pred ---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcchHHHHhc
Q 005157 194 ---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (711)
Q Consensus 194 ---------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~GS~~f~~~ 246 (711)
++|+.||++|++++|++++.|.+.+.+++++|.|+|..+||.|..|++.+.+.
T Consensus 128 ~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~~~ 201 (486)
T PRK08262 128 GTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGLGARAIAEL 201 (486)
T ss_pred CCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCCcCHHHHHHH
Confidence 36999999999999999999998777788999999999999998899988853
No 10
>PRK09133 hypothetical protein; Provisional
Probab=99.49 E-value=5.8e-13 Score=151.10 Aligned_cols=150 Identities=18% Similarity=0.216 Sum_probs=116.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEE-EEeeeccCCCcccccccccCcccccc
Q 005157 82 RGFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVE-VDFFHAKSGANRVGTGVFKGKTLIYS 160 (711)
Q Consensus 82 ~~fs~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~ve-vd~f~~~~g~~~~~g~~~~~~~~~Y~ 160 (711)
++.+.+++.+.|++|.+|. -..+..++.++.+||.++++++|. +++ ++.+.. ..
T Consensus 32 ~~~~~~~~~~~l~~Lv~i~-S~s~~~~e~~~~~~l~~~l~~~G~------~~~~~~~~~~------------------~~ 86 (472)
T PRK09133 32 PTADQQAARDLYKELIEIN-TTASTGSTTPAAEAMAARLKAAGF------ADADIEVTGP------------------YP 86 (472)
T ss_pred cchhHHHHHHHHHHHhccC-CCCCCcchHHHHHHHHHHHHHcCC------CceEEEeccC------------------CC
Confidence 4688999999999999984 323234556899999999999983 221 111110 01
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecCcccCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCC
Q 005157 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHE 220 (711)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~--------------------spGA~Dd~sGva~~LE~ar~L~~~~~~ 220 (711)
+..|++++++|+ .+.+.|++++|+|+||. ++|+.||++|+|++|++++.|.+.+..
T Consensus 87 ~~~nli~~~~g~----~~~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~ 162 (472)
T PRK09133 87 RKGNLVARLRGT----DPKKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFK 162 (472)
T ss_pred CceeEEEEecCC----CCCCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCC
Confidence 357999999764 23467999999999984 489999999999999999999987778
Q ss_pred CCCcEEEEEeCCCC-CCCcchHHHHhcCCCcCCceEEEEeec
Q 005157 221 FKNAVIFLFNTGEE-EGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (711)
Q Consensus 221 ~~~~I~flf~~~EE-~gl~GS~~f~~~h~~~~~v~a~inLD~ 261 (711)
++++|.|+|..+|| .|..|++.+.++++...+..++|+ |.
T Consensus 163 ~~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~~~~~~~i~-e~ 203 (472)
T PRK09133 163 PKRDIILALTGDEEGTPMNGVAWLAENHRDLIDAEFALN-EG 203 (472)
T ss_pred CCCCEEEEEECccccCccchHHHHHHHHhhccCeEEEEE-CC
Confidence 89999999999999 789999999977653334567777 74
No 11
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.48 E-value=4.2e-13 Score=149.83 Aligned_cols=129 Identities=20% Similarity=0.244 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHHHHhcC--C-----CCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCc
Q 005157 83 GFSELEAMKHVKALTQLG--P-----HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGK 155 (711)
Q Consensus 83 ~fs~erA~~~L~~L~~ig--p-----r~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~ 155 (711)
+++.+|.++++..|.+|| | |...|+++.++++||.+++++.| ++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G------~~v~~~------------------- 60 (414)
T PRK12891 6 RVDGERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAG------CTVRVD------------------- 60 (414)
T ss_pred ccCHHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCC------CEEEEC-------------------
Confidence 356679999999999985 2 67778888999999999999998 344442
Q ss_pred cccccccceEEEEEcCCCCCCCCCCeEEEeecCcccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q 005157 156 TLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE 235 (711)
Q Consensus 156 ~~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~ 235 (711)
...|++++++|. ++..+.|++++|+||||. .|..|+++|+++++++++.|++.+.+++++|.|+++.+||.
T Consensus 61 -----~~gNl~a~~~g~---~~~~~~l~~~~H~DtVp~-gg~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~ 131 (414)
T PRK12891 61 -----AMGNLFARRAGR---DPDAAPVMTGSHADSQPT-GGRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEG 131 (414)
T ss_pred -----CCCCEEEEecCC---CCCCCeEEEEecccCCCC-CccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccc
Confidence 235999999875 134588999999999995 46789999999999999999998888999999999999998
Q ss_pred C-----CcchHHHHh
Q 005157 236 G-----LNGAHSFVT 245 (711)
Q Consensus 236 g-----l~GS~~f~~ 245 (711)
+ +.||+.+..
T Consensus 132 ~~f~~~~~Gs~~~~g 146 (414)
T PRK12891 132 SRFAPSMVGSGVFFG 146 (414)
T ss_pred CcCCcccccHHHHhC
Confidence 5 579988863
No 12
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.45 E-value=8.6e-13 Score=146.66 Aligned_cols=127 Identities=20% Similarity=0.158 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccc
Q 005157 87 LEAMKHVKALTQLGP-------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIY 159 (711)
Q Consensus 87 erA~~~L~~L~~igp-------r~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y 159 (711)
+|.++++..+.+++. |..-|+++.++++||.+++++.| +++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G------~~~~~~----------------------- 51 (401)
T TIGR01879 1 QRLWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAG------LEVRFD----------------------- 51 (401)
T ss_pred ChHHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCC------CEEEEe-----------------------
Confidence 367888999988753 44458888899999999999998 344432
Q ss_pred cccceEEEEEcCCCCCCCCCCeEEEeecCcccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC----
Q 005157 160 SDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE---- 235 (711)
Q Consensus 160 ~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~---- 235 (711)
+..||+++++|. .++.+.|++++|+||||. .|..|+..|++++|++++.|++.+.+|+++|.|+++.+||.
T Consensus 52 -~~~nl~a~~~g~---~~~~~~l~~~~H~DtV~~-gg~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~ 126 (401)
T TIGR01879 52 -EVGNLIGRKEGT---EPPLEVVLSGSHIDTVVN-GGNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFP 126 (401)
T ss_pred -cCCcEEEEecCC---CCCCCEEEEecccccCCC-CCccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcc
Confidence 236999999875 134589999999999986 47889999999999999999998888999999999999997
Q ss_pred -CCcchHHHHhcC
Q 005157 236 -GLNGAHSFVTQH 247 (711)
Q Consensus 236 -gl~GS~~f~~~h 247 (711)
++.||+.++.+.
T Consensus 127 ~~~~Gs~~~~~~~ 139 (401)
T TIGR01879 127 YGMWGSRNMVGLA 139 (401)
T ss_pred cccccHHHHhccc
Confidence 789999998544
No 13
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.45 E-value=1.3e-12 Score=145.68 Aligned_cols=131 Identities=20% Similarity=0.203 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCc
Q 005157 83 GFSELEAMKHVKALTQLGP-------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGK 155 (711)
Q Consensus 83 ~fs~erA~~~L~~L~~igp-------r~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~ 155 (711)
+.+++++++++++|+++++ |+..|.++.++.+||.++|+++| ++++.+
T Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g------~~~~~~------------------- 57 (413)
T PRK09290 3 RIDAERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAG------LTVRVD------------------- 57 (413)
T ss_pred CcCHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcC------CEEEEc-------------------
Confidence 3568999999999999854 55678888899999999999987 344431
Q ss_pred cccccccceEEEEEcCCCCCCCCCCeEEEeecCcccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q 005157 156 TLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE 235 (711)
Q Consensus 156 ~~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~ 235 (711)
...|++++++|. .++.+.|++++|+|+||. .|..|++.|+|+++++++.|.+.+.+++++|.|+++.+||.
T Consensus 58 -----~~~nl~a~~~g~---~~~~~~l~l~gH~DtVp~-~g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~ 128 (413)
T PRK09290 58 -----AVGNLFGRLEGR---DPDAPAVLTGSHLDTVPN-GGRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEG 128 (413)
T ss_pred -----CCCcEEEEecCC---CCCCCEEEEecCccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCcc
Confidence 235999999763 123578999999999985 46789999999999999999988777889999999999998
Q ss_pred -----CCcchHHHHhcC
Q 005157 236 -----GLNGAHSFVTQH 247 (711)
Q Consensus 236 -----gl~GS~~f~~~h 247 (711)
|..|++.+++++
T Consensus 129 g~~g~~~~G~~~~~~~~ 145 (413)
T PRK09290 129 SRFGPAMLGSRVFTGAL 145 (413)
T ss_pred ccccCccccHHHHHccc
Confidence 568999988554
No 14
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.43 E-value=1.1e-12 Score=152.69 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHhcCC----------CCCCCHHHHHHHHHHHHHHHhhccccCCcc-eEEEEeeeccCCCccccccccc
Q 005157 85 SELEAMKHVKALTQLGP----------HAVGSDALDRALQYVLAASQKIKESKHWEA-DVEVDFFHAKSGANRVGTGVFK 153 (711)
Q Consensus 85 s~erA~~~L~~L~~igp----------r~~GS~~~~~a~~yL~~~l~~ig~~~~~~~-~vevd~f~~~~g~~~~~g~~~~ 153 (711)
-.+|.++++.+|++|+. |...|++..++++|+.++++++| + ++++|
T Consensus 179 ~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~G------l~~v~~D----------------- 235 (591)
T PRK13590 179 LGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCG------FDEVHID----------------- 235 (591)
T ss_pred HHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcC------CCeeeEC-----------------
Confidence 46899999999998743 33348899999999999999998 3 44443
Q ss_pred CccccccccceEEEEEcCCCCCCCCCCeEEEeecCcccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q 005157 154 GKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGE 233 (711)
Q Consensus 154 ~~~~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~E 233 (711)
...|++++++|+ .+..++|++++|+|||+. .|..|+..||+++||++|.|.+.+.+++++|.|++|.+|
T Consensus 236 -------~~GNl~~~~~g~---~~~~~~v~~gsHlDTV~~-gG~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~E 304 (591)
T PRK13590 236 -------AVGNVVGRYKGS---TPQAKRLLTGSHYDTVRN-GGKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEE 304 (591)
T ss_pred -------CCCCEEEEecCC---CCCCCeEEEecccccCCC-CCCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCC
Confidence 458999999885 234588999999999985 578999999999999999999988888899999999999
Q ss_pred CC-----CCcchHHHHh
Q 005157 234 EE-----GLNGAHSFVT 245 (711)
Q Consensus 234 E~-----gl~GS~~f~~ 245 (711)
|. ++.||+.+..
T Consensus 305 Eg~rF~~~~~GS~~~~G 321 (591)
T PRK13590 305 EGQRYKATFLGSGALIG 321 (591)
T ss_pred ccccCCccccchHHHhC
Confidence 97 5899999874
No 15
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.42 E-value=1.3e-12 Score=152.06 Aligned_cols=127 Identities=16% Similarity=0.183 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHhcC----------CCCCCCHHHHHHHHHHHHHHHhhccccCCcce-EEEEeeeccCCCccccccccc
Q 005157 85 SELEAMKHVKALTQLG----------PHAVGSDALDRALQYVLAASQKIKESKHWEAD-VEVDFFHAKSGANRVGTGVFK 153 (711)
Q Consensus 85 s~erA~~~L~~L~~ig----------pr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~-vevd~f~~~~g~~~~~g~~~~ 153 (711)
..+|.++++..|++|| .|...|+++.++++|+.+++++.| ++ +++|
T Consensus 179 ~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~G------l~~v~~D----------------- 235 (591)
T PRK13799 179 IGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAG------FDEVEID----------------- 235 (591)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcC------CCeEeEC-----------------
Confidence 5799999999999986 155678999999999999999998 34 6654
Q ss_pred CccccccccceEEEEEcCCCCCCCCCCeEEEeecCcccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q 005157 154 GKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGE 233 (711)
Q Consensus 154 ~~~~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~E 233 (711)
.+.||+++++|+ ++..+.|++++|+|||+. .|..|+..||+++||++|.|.+.+.+++++|.++.|.+|
T Consensus 236 -------~~gNv~~~~~g~---~~~~p~v~~gSHlDTV~~-gG~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~E 304 (591)
T PRK13799 236 -------AVGNVVGRYKAA---DDDAKTLITGSHYDTVRN-GGKYDGREGIFLAIACVKELHEQGERLPFHFEVIAFAEE 304 (591)
T ss_pred -------CCCCEEEEcCCC---CCCCCeEEEeccccccCC-CCccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCC
Confidence 458999999886 245689999999999984 789999999999999999999999999999999999999
Q ss_pred CC-----CCcchHHHHh
Q 005157 234 EE-----GLNGAHSFVT 245 (711)
Q Consensus 234 E~-----gl~GS~~f~~ 245 (711)
|. ++.||+.+..
T Consensus 305 Eg~rF~~~~~GS~~~~G 321 (591)
T PRK13799 305 EGQRFKATFLGSGALIG 321 (591)
T ss_pred CccCCCccccchHHHhC
Confidence 97 7899999984
No 16
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.41 E-value=4.5e-12 Score=141.38 Aligned_cols=145 Identities=22% Similarity=0.296 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccc
Q 005157 85 SELEAMKHVKALTQLGPHAVGSD-ALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLN 163 (711)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS~-~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~ 163 (711)
..+++.+.|++|.+| |...+.+ +++++.+||.++|+++| ++++.+.... ....
T Consensus 35 ~~~~~~~~l~~lv~i-~S~s~~~~~~~~~~~~l~~~L~~~G------~~v~~~~~~~-------------------~~~~ 88 (410)
T PRK06133 35 EQPAYLDTLKELVSI-ESGSGDAEGLKQVAALLAERLKALG------AKVERAPTPP-------------------SAGD 88 (410)
T ss_pred hHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHHHHhCC------CeEEEEccCC-------------------CCCC
Confidence 446788889999997 3333332 34589999999999998 3444321100 1236
Q ss_pred eEEEEEcCCCCCCCCCCeEEEeecCcccCC-----------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEE
Q 005157 164 HIVLRILPKYASEAGENAILVSSHIDTVSA-----------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226 (711)
Q Consensus 164 NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~-----------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~ 226 (711)
|++++++|. +.+.|++.+|+|+||. ++|+.|+++|++++|++++.|.+.+.+++.+|.
T Consensus 89 ~lia~~~g~-----~~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~ 163 (410)
T PRK06133 89 MVVATFKGT-----GKRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLT 163 (410)
T ss_pred eEEEEECCC-----CCceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEE
Confidence 999999763 2468999999999984 479999999999999999999987767788999
Q ss_pred EEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeecC
Q 005157 227 FLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (711)
Q Consensus 227 flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~~ 262 (711)
|+|..+||.|..|++.++++... +...+++.|..
T Consensus 164 ~~~~~dEE~g~~G~~~~~~~~~~--~~d~~i~~ep~ 197 (410)
T PRK06133 164 VLFNPDEETGSPGSRELIAELAA--QHDVVFSCEPG 197 (410)
T ss_pred EEEECCcccCCccHHHHHHHHhc--cCCEEEEeCCC
Confidence 99999999998999999976432 34667777743
No 17
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.41 E-value=5.4e-12 Score=141.19 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceE
Q 005157 87 LEAMKHVKALTQLGPHAVGS-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (711)
Q Consensus 87 erA~~~L~~L~~igpr~~GS-~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (711)
+++.+.+++|.+|.. +.+. .+++++.+||.++|+++| ++++.+ ... .+..||
T Consensus 13 ~~~~~~l~~Lv~i~S-~s~~~~~e~~~a~~l~~~l~~~G------~~~~~~--~~~------------------~~~~nv 65 (421)
T PRK08596 13 DELLELLKTLVRFET-PAPPARNTNEAQEFIAEFLRKLG------FSVDKW--DVY------------------PNDPNV 65 (421)
T ss_pred HHHHHHHHHHhcCCC-CCCCchhHHHHHHHHHHHHHHCC------CeEEEE--Ecc------------------CCCceE
Confidence 678899999999732 2222 245678999999999998 344432 110 134799
Q ss_pred EEEEcCCCCCCCCCCeEEEeecCcccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCc
Q 005157 166 VLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (711)
Q Consensus 166 i~~i~g~~~~~~~~~~Vll~aH~DSv~~---------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~ 224 (711)
+++++|++ ....+.|++++|+|+||. ++|+.||++|++++|++++.|.+.+.+++.+
T Consensus 66 ia~~~g~~--~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~ 143 (421)
T PRK08596 66 VGVKKGTE--SDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGD 143 (421)
T ss_pred EEEecCCC--CCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 99997641 122367999999999874 3899999999999999999999887778899
Q ss_pred EEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeecC
Q 005157 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (711)
Q Consensus 225 I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~~ 262 (711)
|.|+|..+||.|..|++.++++.. ....+++.|..
T Consensus 144 v~~~~~~dEE~g~~G~~~~~~~~~---~~d~~i~~ep~ 178 (421)
T PRK08596 144 LIFQSVIGEEVGEAGTLQCCERGY---DADFAVVVDTS 178 (421)
T ss_pred EEEEEEeccccCCcCHHHHHhcCC---CCCEEEECCCC
Confidence 999999999999999999996543 24567777753
No 18
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.40 E-value=3.7e-12 Score=141.71 Aligned_cols=130 Identities=21% Similarity=0.249 Sum_probs=107.1
Q ss_pred CCCHHHHHHHHHHHHhcCC------CCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCcc
Q 005157 83 GFSELEAMKHVKALTQLGP------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKT 156 (711)
Q Consensus 83 ~fs~erA~~~L~~L~~igp------r~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~ 156 (711)
+.+.+|+++.+++|++++. |+..++++.++++||.++|+++| ++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G------~~~~~~-------------------- 59 (412)
T PRK12892 6 RIDGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAG------LAVRID-------------------- 59 (412)
T ss_pred cccHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcC------CEEEEc--------------------
Confidence 3467899999999999864 35557777799999999999998 344431
Q ss_pred ccccccceEEEEEcCCCCCCCCCCeEEEeecCcccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC-
Q 005157 157 LIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE- 235 (711)
Q Consensus 157 ~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~- 235 (711)
+..|++++++|+ .+.+.|++++|+||||. .|-.|+..|+|++|++++.|.+.+.+++++|.|+++.+||.
T Consensus 60 ----~~~nl~a~~~g~----~~~~~l~l~gH~DtVp~-~g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~ 130 (412)
T PRK12892 60 ----GIGNVFGRLPGP----GPGPALLVGSHLDSQNL-GGRYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGS 130 (412)
T ss_pred ----CCCcEEEEecCC----CCCCeEEEEccccCCCC-CCcccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccc
Confidence 235999999875 23378999999999995 36689999999999999999998888899999999999998
Q ss_pred ----CCcchHHHHhcC
Q 005157 236 ----GLNGAHSFVTQH 247 (711)
Q Consensus 236 ----gl~GS~~f~~~h 247 (711)
++.||+.++.++
T Consensus 131 ~~~~~~~Gs~~~~~~~ 146 (412)
T PRK12892 131 RFTPGFLGSRAYAGRL 146 (412)
T ss_pred cccCccccHHHHHcCC
Confidence 468999998544
No 19
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.40 E-value=3.8e-12 Score=141.75 Aligned_cols=131 Identities=20% Similarity=0.237 Sum_probs=107.2
Q ss_pred CCHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCcc
Q 005157 84 FSELEAMKHVKALTQLGP-------HAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKT 156 (711)
Q Consensus 84 fs~erA~~~L~~L~~igp-------r~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~ 156 (711)
.+.++++++|++|.++.. |..+|.++.++.+||.++|++.| ++++++
T Consensus 7 ~~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G------~~~~~~-------------------- 60 (412)
T PRK12893 7 INGERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAG------LTVSVD-------------------- 60 (412)
T ss_pred cCHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcC------CEEEEc--------------------
Confidence 467899999999999863 33457777899999999999998 344431
Q ss_pred ccccccceEEEEEcCCCCCCCCCCeEEEeecCcccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC
Q 005157 157 LIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEG 236 (711)
Q Consensus 157 ~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~g 236 (711)
+..|++++++|. .++.+.|++++|+|+||. .|..|++.|++++|++++.|.+.+.+++++|.|+|+.+||.|
T Consensus 61 ----~~~n~~a~~~g~---~~~~~~l~l~~H~DtVp~-~g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g 132 (412)
T PRK12893 61 ----AIGNLFGRRAGT---DPDAPPVLIGSHLDTQPT-GGRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGA 132 (412)
T ss_pred ----CCCcEEEEeCCC---CCCCCEEEEEecccCCCC-CCcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEcccccc
Confidence 235999999774 124578999999999984 567899999999999999999887788999999999999986
Q ss_pred -----CcchHHHHhcCC
Q 005157 237 -----LNGAHSFVTQHP 248 (711)
Q Consensus 237 -----l~GS~~f~~~h~ 248 (711)
+.|+..+..+++
T Consensus 133 ~~~~~~~G~~~~~~~~~ 149 (412)
T PRK12893 133 RFAPAMLGSGVFTGALP 149 (412)
T ss_pred ccccccccHHHHhCcCC
Confidence 789998885433
No 20
>PRK07473 carboxypeptidase; Provisional
Probab=99.39 E-value=9.4e-12 Score=137.37 Aligned_cols=149 Identities=19% Similarity=0.211 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHH-HHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCcccccccc
Q 005157 84 FSELEAMKHVKALTQLGPHAVGSDAL-DRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDL 162 (711)
Q Consensus 84 fs~erA~~~L~~L~~igpr~~GS~~~-~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~ 162 (711)
++.+++.+.|++|.+|.. +.+.+++ .+..+|+.++|+++| ++++.. ....+ ..
T Consensus 8 ~~~~~~~~~l~~Lv~i~S-~s~~~~~~~~~~~~l~~~l~~~G------~~~~~~--~~~~~-----------------~~ 61 (376)
T PRK07473 8 FDSEAMLAGLRPWVECES-PTWDAAAVNRMLDLAARDMAIMG------ATIERI--PGRQG-----------------FG 61 (376)
T ss_pred cCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHcC------CeEEEe--cCCCC-----------------CC
Confidence 568999999999999843 3444433 478899999999988 344432 11000 12
Q ss_pred ceEEEEEcCCCCCCCCCCeEEEeecCcccCC-----------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcE
Q 005157 163 NHIVLRILPKYASEAGENAILVSSHIDTVSA-----------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAV 225 (711)
Q Consensus 163 ~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~-----------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I 225 (711)
.|+++++++. .+..+.|++++|+|+|+. ++|+.|+|+|++++|++++.|.+.+.+++.+|
T Consensus 62 ~~~~~~~~~~---~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v 138 (376)
T PRK07473 62 DCVRARFPHP---RQGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPI 138 (376)
T ss_pred CeEEEEeCCC---CCCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCE
Confidence 5899988653 124578999999999953 48999999999999999999988765667789
Q ss_pred EEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeecCc
Q 005157 226 IFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (711)
Q Consensus 226 ~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~~G 263 (711)
.|+|..+||.|..|++.+++++.. ...++|..|..+
T Consensus 139 ~~~~~~dEE~g~~g~~~~~~~~~~--~~d~~iv~ep~~ 174 (376)
T PRK07473 139 TVLFTPDEEVGTPSTRDLIEAEAA--RNKYVLVPEPGR 174 (376)
T ss_pred EEEEeCCcccCCccHHHHHHHhhc--cCCEEEEeCCCC
Confidence 999999999999999999965432 346777777543
No 21
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.38 E-value=6e-12 Score=138.34 Aligned_cols=145 Identities=15% Similarity=0.181 Sum_probs=105.7
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEEEEEc
Q 005157 91 KHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRIL 170 (711)
Q Consensus 91 ~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~ 170 (711)
+.|++|.++......+.++.++++||.++|+++|. +++... ...+. .....|+++.+.
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~------~~~~~~--~~~~~--------------~~~~~~~~~~~~ 59 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGF------STDVIE--ITDDR--------------LKVLGKVVVKEP 59 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCC------ceEEEe--cCchh--------------cccccceEEecc
Confidence 46778888643222345667899999999999983 343321 11000 002246777776
Q ss_pred CCCCCCCCCCeEEEeecCcccCCC---------------------CCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 005157 171 PKYASEAGENAILVSSHIDTVSAG---------------------EGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLF 229 (711)
Q Consensus 171 g~~~~~~~~~~Vll~aH~DSv~~s---------------------pGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf 229 (711)
|. .+.+.|++.+|+|+||.. +|+.||++|+|++|++++.|.+.+.+++++|.|+|
T Consensus 60 g~----~~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~ 135 (375)
T TIGR01910 60 GN----GNEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQS 135 (375)
T ss_pred CC----CCCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEE
Confidence 64 245789999999999863 68999999999999999999987767889999999
Q ss_pred eCCCCCCCcchHHHHhcCCCcCCceEEEEeecC
Q 005157 230 NTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (711)
Q Consensus 230 ~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~~ 262 (711)
+.+||.|..|++.++++ ...++...++..|..
T Consensus 136 ~~~EE~g~~G~~~~~~~-~~~~~~d~~i~~~~~ 167 (375)
T TIGR01910 136 VVDEESGEAGTLYLLQR-GYFKDADGVLIPEPS 167 (375)
T ss_pred EcCcccCchhHHHHHHc-CCCCCCCEEEECCCC
Confidence 99999999999999954 233335666666644
No 22
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.37 E-value=7.8e-12 Score=137.44 Aligned_cols=140 Identities=19% Similarity=0.267 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceE
Q 005157 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (711)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (711)
++++.+.|++|.++. -+. .++.++.+||.++|+++| ++++.+. .. .+..|+
T Consensus 1 ~~~~~~~l~~Lv~i~-s~s--~~e~~~~~~l~~~l~~~G------~~~~~~~--~~------------------~~~~~l 51 (377)
T PRK08588 1 EEEKIQILADIVKIN-SVN--DNEIEVANYLQDLFAKHG------IESKIVK--VN------------------DGRANL 51 (377)
T ss_pred ChHHHHHHHHHhcCC-CCC--CcHHHHHHHHHHHHHHCC------CceEEEe--cC------------------CCCceE
Confidence 367889999999863 333 345689999999999988 3444321 10 034699
Q ss_pred EEEEcCCCCCCCCCCeEEEeecCcccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCc
Q 005157 166 VLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (711)
Q Consensus 166 i~~i~g~~~~~~~~~~Vll~aH~DSv~~---------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~ 224 (711)
++++ |. .++.|++.+|+|+||. ++|+.|++.|++++|++++.|.+.+..++++
T Consensus 52 ~a~~-g~-----~~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~ 125 (377)
T PRK08588 52 VAEI-GS-----GSPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGT 125 (377)
T ss_pred EEEe-CC-----CCceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCc
Confidence 9988 32 1278999999999985 3789999999999999999999887778899
Q ss_pred EEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeec
Q 005157 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (711)
Q Consensus 225 I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~ 261 (711)
|.|+|..+||.|..|++.++++ ...++...++..|.
T Consensus 126 i~l~~~~dEE~g~~G~~~~~~~-~~~~~~d~~i~~ep 161 (377)
T PRK08588 126 IRLLATAGEEVGELGAKQLTEK-GYADDLDALIIGEP 161 (377)
T ss_pred EEEEEEcccccCchhHHHHHhc-CccCCCCEEEEecC
Confidence 9999999999999999999954 33334455555553
No 23
>PRK07906 hypothetical protein; Provisional
Probab=99.34 E-value=1e-11 Score=138.98 Aligned_cols=130 Identities=25% Similarity=0.351 Sum_probs=100.4
Q ss_pred HHHHHHHHhcCCCCC---CCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEE
Q 005157 90 MKHVKALTQLGPHAV---GSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (711)
Q Consensus 90 ~~~L~~L~~igpr~~---GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (711)
.+.|++|.+|..-.. ..++++++.+||.++++++|. +++.+. .. .+..|++
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~------~~~~~~--~~------------------~~~~nv~ 55 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGL------EPTYLE--SA------------------PGRANVV 55 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCC------CeEEee--cC------------------CCceEEE
Confidence 467888888743211 125567899999999999983 444321 10 1347999
Q ss_pred EEEcCCCCCCCCCCeEEEeecCcccCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEE
Q 005157 167 LRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226 (711)
Q Consensus 167 ~~i~g~~~~~~~~~~Vll~aH~DSv~~--------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~ 226 (711)
++++|+ .+..+.|++++|+|+||. ++|+.||++|++++|++++.|++.+..++++|.
T Consensus 56 ~~~~g~---~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~ 132 (426)
T PRK07906 56 ARLPGA---DPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLV 132 (426)
T ss_pred EEEeCC---CCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEE
Confidence 999764 134578999999999985 389999999999999999999988778899999
Q ss_pred EEEeCCCCCCC-cchHHHHhcCC
Q 005157 227 FLFNTGEEEGL-NGAHSFVTQHP 248 (711)
Q Consensus 227 flf~~~EE~gl-~GS~~f~~~h~ 248 (711)
|+|+.+||.|. .|++.++++++
T Consensus 133 ~~~~~dEE~g~~~g~~~l~~~~~ 155 (426)
T PRK07906 133 FAFVADEEAGGTYGAHWLVDNHP 155 (426)
T ss_pred EEEecCcccchhhhHHHHHHHHH
Confidence 99999999964 69999986543
No 24
>PRK07338 hypothetical protein; Provisional
Probab=99.32 E-value=2.8e-11 Score=134.32 Aligned_cols=157 Identities=18% Similarity=0.239 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccce
Q 005157 86 ELEAMKHVKALTQLGPHAVGS-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (711)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS-~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (711)
.++..+.|++|.++. -..+. ++.+++.+||.++|+++|. +++... .. +..... ..+....+....|
T Consensus 16 ~~~~~~~l~~lv~i~-S~s~~~~~~~~~~~~l~~~l~~~G~------~~~~~~--~~-~~~~~~---~~~~~~~~~~~~n 82 (402)
T PRK07338 16 QAPMLEQLIAWAAIN-SGSRNLDGLARMAELLADAFAALPG------EIELIP--LP-PVEVID---ADGRTLEQAHGPA 82 (402)
T ss_pred HHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHhCCC------cEEEec--CC-cccccc---ccccccccCcCCe
Confidence 577788899998873 22222 2345799999999999983 333321 10 000000 0000001123479
Q ss_pred EEEEEcCCCCCCCCCCeEEEeecCcccCC-----------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEE
Q 005157 165 IVLRILPKYASEAGENAILVSSHIDTVSA-----------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIF 227 (711)
Q Consensus 165 Vi~~i~g~~~~~~~~~~Vll~aH~DSv~~-----------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~f 227 (711)
++++++|. .++.|++++|+|+||. ++|+.|+|+|++++|++++.|.+.+.+++.+|.|
T Consensus 83 l~a~~~~~-----~~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~ 157 (402)
T PRK07338 83 LHVSVRPE-----APRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDV 157 (402)
T ss_pred EEEEECCC-----CCccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEE
Confidence 99998643 2246999999999974 3789999999999999999998876677789999
Q ss_pred EEeCCCCCCCcchHHHHhcCCCcCCceEEEEeecC
Q 005157 228 LFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (711)
Q Consensus 228 lf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~~ 262 (711)
+|..+||.|..|++.+++++.. +..+.+.+|..
T Consensus 158 ~~~~dEE~g~~g~~~~~~~~~~--~~~~~i~~ep~ 190 (402)
T PRK07338 158 LINPDEEIGSPASAPLLAELAR--GKHAALTYEPA 190 (402)
T ss_pred EEECCcccCChhhHHHHHHHhc--cCcEEEEecCC
Confidence 9999999999999999976542 34566677653
No 25
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.32 E-value=3e-11 Score=134.08 Aligned_cols=147 Identities=17% Similarity=0.237 Sum_probs=110.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCcccccccc
Q 005157 83 GFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDL 162 (711)
Q Consensus 83 ~fs~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~ 162 (711)
++-.+++.+.|++|.+|... .+..++.++.+|+.+++++++. +++. +... ...
T Consensus 5 ~~~~~~~~~~l~~lv~ipS~-~~~~~~~~~~~~l~~~l~~~G~------~~~~--~~~~------------------~g~ 57 (400)
T TIGR01880 5 KWEEDIAVTRFREYLRINTV-QPNPDYAACVDFLIKQADELGL------ARKT--IEFV------------------PGK 57 (400)
T ss_pred ccchHHHHHHHHHHhccCcc-CCCccHHHHHHHHHHHHHhCCC------ceeE--EEec------------------CCc
Confidence 56789999999999998433 2333456899999999999983 3332 1110 023
Q ss_pred ceEEEEEcCCCCCCCCCCeEEEeecCcccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCC
Q 005157 163 NHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEF 221 (711)
Q Consensus 163 ~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~---------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~ 221 (711)
.|++++++|++ +..+.|++++|+|+||. ++|+.|+++|++++|++++.|.+.+.++
T Consensus 58 ~~l~~~~~g~~---~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~ 134 (400)
T TIGR01880 58 PVVVLTWPGSN---PELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKF 134 (400)
T ss_pred eeEEEEEecCC---CCCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCC
Confidence 68999997641 23478999999999974 2789999999999999999999887778
Q ss_pred CCcEEEEEeCCCCCCC-cchHHHHhcCCCcCCceEEEEee
Q 005157 222 KNAVIFLFNTGEEEGL-NGAHSFVTQHPWSTTIRVAVDLE 260 (711)
Q Consensus 222 ~~~I~flf~~~EE~gl-~GS~~f~~~h~~~~~v~a~inLD 260 (711)
+++|.|+|..+||.|. .|++.++++.. .+.+...+.+|
T Consensus 135 ~~~v~l~~~~dEE~g~~~G~~~~~~~~~-~~~~~~~~~~d 173 (400)
T TIGR01880 135 KRTIHISFVPDEEIGGHDGMEKFAKTDE-FKALNLGFALD 173 (400)
T ss_pred CceEEEEEeCCcccCcHhHHHHHHHhhh-ccCCceEEEEc
Confidence 8999999999999875 69999985422 22344555554
No 26
>PRK07907 hypothetical protein; Provisional
Probab=99.31 E-value=4.4e-11 Score=134.99 Aligned_cols=143 Identities=18% Similarity=0.241 Sum_probs=107.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCcccccc
Q 005157 85 SELEAMKHVKALTQLGPHAVGS----DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYS 160 (711)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS----~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~ 160 (711)
..+++.+.|++|.+|.. ..+. .+.+++.+||.++|++++. .+++. ++. .
T Consensus 16 ~~~~~~~ll~~LV~ipS-~s~~~~~~~~~~~~~~~l~~~l~~~g~-----~~~~~--~~~-------------------~ 68 (449)
T PRK07907 16 LLPRVRADLEELVRIPS-VAADPFRREEVARSAEWVADLLREAGF-----DDVRV--VSA-------------------D 68 (449)
T ss_pred HHHHHHHHHHHHhcCCC-CCCCccchhhHHHHHHHHHHHHHHcCC-----ceEEE--Eec-------------------C
Confidence 45788899999999743 2221 2345899999999999872 02332 111 1
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecCcccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCC
Q 005157 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAH 219 (711)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~---------------------spGA~Dd~sGva~~LE~ar~L~~~~~ 219 (711)
+..|++++++++ ++.+.|++++|+|+||. ++|+.|+++|+|++|++++.| . .
T Consensus 69 ~~~nl~a~~~~~----~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l-~--~ 141 (449)
T PRK07907 69 GAPAVIGTRPAP----PGAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL-G--G 141 (449)
T ss_pred CCCEEEEEecCC----CCCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh-c--c
Confidence 347999999763 24578999999999985 279999999999999999999 3 4
Q ss_pred CCCCcEEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeec
Q 005157 220 EFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (711)
Q Consensus 220 ~~~~~I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~ 261 (711)
+++++|.|+++++||.|..|++.+++++....+..+++..|.
T Consensus 142 ~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~ 183 (449)
T PRK07907 142 DLPVGVTVFVEGEEEMGSPSLERLLAEHPDLLAADVIVIADS 183 (449)
T ss_pred CCCCcEEEEEEcCcccCCccHHHHHHhchHhhcCCEEEEecC
Confidence 567899999999999999999999976543233456676664
No 27
>PRK09104 hypothetical protein; Validated
Probab=99.30 E-value=4.3e-11 Score=135.61 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCcccccc
Q 005157 85 SELEAMKHVKALTQLGPHAVGS----DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYS 160 (711)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS----~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~ 160 (711)
..+++.+.|++|.+|.. ..+. .+..++.+||.++|+++| +++++. +. .
T Consensus 15 ~~~~~~~~L~~lv~i~S-vs~~~~~~~~~~~~~~~l~~~l~~~G------~~v~~~--~~-------------------~ 66 (464)
T PRK09104 15 NLDASLERLFALLRIPS-ISTDPAYAADCRKAADWLVADLASLG------FEASVR--DT-------------------P 66 (464)
T ss_pred hHHHHHHHHHHHhcCCC-CCCCccchHHHHHHHHHHHHHHHHCC------CeEEEE--ec-------------------C
Confidence 46788999999998743 2222 223578999999999988 344431 11 0
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecCcccCC--------------------------CCCCCCChhHHHHHHHHHHHH
Q 005157 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSA--------------------------GEGAGDCSSCVAVMLELARVM 214 (711)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~--------------------------spGA~Dd~sGva~~LE~ar~L 214 (711)
+..||+++++|+ ++..+.|++++|+|+||. ++|+.|||.|++++|++++.|
T Consensus 67 ~~~~l~a~~~g~---~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l 143 (464)
T PRK09104 67 GHPMVVAHHEGP---TGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAW 143 (464)
T ss_pred CCCEEEEEecCC---CCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHH
Confidence 236999999764 134688999999999863 268899999999999999999
Q ss_pred HhcCCCCCCcEEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeec
Q 005157 215 SQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (711)
Q Consensus 215 ~~~~~~~~~~I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~ 261 (711)
.+.+..++.+|.|+|.++||.|..|...++.+.....+..++|+.|.
T Consensus 144 ~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~ 190 (464)
T PRK09104 144 KAVTGSLPVRVTILFEGEEESGSPSLVPFLEANAEELKADVALVCDT 190 (464)
T ss_pred HHhcCCCCCcEEEEEECccccCCccHHHHHHhhHHhcCCCEEEEeCC
Confidence 98765677899999999999999999999865432224567777773
No 28
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.30 E-value=6.4e-11 Score=132.39 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccce
Q 005157 86 ELEAMKHVKALTQLGPHA-VGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (711)
Q Consensus 86 ~erA~~~L~~L~~igpr~-~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (711)
.+++.+.+++|.++..-. .| .++.++.+||.++|+++| ++++.+......+ . ..+.+..|
T Consensus 13 ~~~~~~~l~~Lv~i~S~~~~g-~~e~~~~~~l~~~l~~~G------~~~~~~~~~~~~~-----------~-~~~~~~~n 73 (427)
T PRK13013 13 RDDLVALTQDLIRIPTLNPPG-RAYREICEFLAARLAPRG------FEVELIRAEGAPG-----------D-SETYPRWN 73 (427)
T ss_pred HHHHHHHHHHHhcCCCcCCCC-ccHHHHHHHHHHHHHHCC------CceEEEecCCCCc-----------c-cccCCcce
Confidence 467888899999873221 12 234689999999999998 3444321100000 0 01123579
Q ss_pred EEEEEcCCCCCCCCCCeEEEeecCcccCC-------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcE
Q 005157 165 IVLRILPKYASEAGENAILVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAV 225 (711)
Q Consensus 165 Vi~~i~g~~~~~~~~~~Vll~aH~DSv~~-------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I 225 (711)
++++++|+ .+++.|++.+|+|+||. ++|+.|+++|++++|.+++.|++.+.+++++|
T Consensus 74 lia~~~g~----~~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v 149 (427)
T PRK13013 74 LVARRQGA----RDGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSI 149 (427)
T ss_pred EEEEecCC----CCCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccE
Confidence 99999764 24478999999999984 37999999999999999999998777788999
Q ss_pred EEEEeCCCCCCCc-chHHHHhcCCCcC--CceEEEEeec
Q 005157 226 IFLFNTGEEEGLN-GAHSFVTQHPWST--TIRVAVDLEA 261 (711)
Q Consensus 226 ~flf~~~EE~gl~-GS~~f~~~h~~~~--~v~a~inLD~ 261 (711)
.|+|..+||.|.. |.+.+. +....+ +..+++..|.
T Consensus 150 ~~~~~~dEE~g~~~g~~~l~-~~~~~~~~~~d~~i~~ep 187 (427)
T PRK13013 150 EISGTADEESGGFGGVAYLA-EQGRFSPDRVQHVIIPEP 187 (427)
T ss_pred EEEEEeccccCChhHHHHHH-hcCCccccCCCEEEEecC
Confidence 9999999998876 555555 333222 3456666663
No 29
>PRK06446 hypothetical protein; Provisional
Probab=99.29 E-value=4e-11 Score=134.88 Aligned_cols=128 Identities=14% Similarity=0.230 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceE
Q 005157 87 LEAMKHVKALTQLGPHAVGSD-ALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (711)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~-~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (711)
+++.+.|++|.+|.. +.+.. +.+++.+||.++|+++| ++++.+ +. .+..|+
T Consensus 2 ~~~~~~l~eLV~i~S-~s~~~~~~~~~a~~l~~~l~~~G------~~ve~~--~~-------------------~~~~~l 53 (436)
T PRK06446 2 DEELYTLIEFLKKPS-ISATGEGIEETANYLKDTMEKLG------IKANIE--RT-------------------KGHPVV 53 (436)
T ss_pred hhHHHHHHHHhCCCC-CCCCcHhHHHHHHHHHHHHHHCC------CeEEEE--ec-------------------CCCCEE
Confidence 467889999999743 22222 33689999999999987 344432 11 023699
Q ss_pred EEEEcCCCCCCCCCCeEEEeecCcccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCc
Q 005157 166 VLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (711)
Q Consensus 166 i~~i~g~~~~~~~~~~Vll~aH~DSv~~---------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~ 224 (711)
++++++ ++.+.|++++|+|+||. ++|+.|||+|++++|.+++.+.+.+ .++.+
T Consensus 54 ia~~~~-----~~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~ 127 (436)
T PRK06446 54 YGEINV-----GAKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVN 127 (436)
T ss_pred EEEecC-----CCCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCC
Confidence 999853 13578999999999874 3899999999999999999987654 56789
Q ss_pred EEEEEeCCCCCCCcchHHHHhcCC
Q 005157 225 VIFLFNTGEEEGLNGAHSFVTQHP 248 (711)
Q Consensus 225 I~flf~~~EE~gl~GS~~f~~~h~ 248 (711)
|.|+|..+||.|..|++.++++++
T Consensus 128 i~~~~~~dEE~g~~g~~~~l~~~~ 151 (436)
T PRK06446 128 VKFLYEGEEEIGSPNLEDFIEKNK 151 (436)
T ss_pred EEEEEEcccccCCHhHHHHHHHHH
Confidence 999999999999999999997764
No 30
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.29 E-value=7.3e-11 Score=122.01 Aligned_cols=167 Identities=21% Similarity=0.303 Sum_probs=116.9
Q ss_pred CeEEEeecCcccC----CCCCCCCChhHHHHHHHHHHHHHhc---CCCCCCcEEEEEeCCCCCCCcchHHHHhcC-----
Q 005157 180 NAILVSSHIDTVS----AGEGAGDCSSCVAVMLELARVMSQW---AHEFKNAVIFLFNTGEEEGLNGAHSFVTQH----- 247 (711)
Q Consensus 180 ~~Vll~aH~DSv~----~spGA~Dd~sGva~~LE~ar~L~~~---~~~~~~~I~flf~~~EE~gl~GS~~f~~~h----- 247 (711)
|.|++.|.+||.. .+|||.++.+|++++|++++.|.+. ....+++|.|+|++||..|..||+.|+.+.
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f 80 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNF 80 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcC
Confidence 5799999999964 3799999999999999999999864 246789999999999999999999998642
Q ss_pred C--------C-cCCceEEEEeecCcCCCCcccccc--CC--C---HHHHHHHHHHccCCCC--cccccccccCCCCCCCC
Q 005157 248 P--------W-STTIRVAVDLEAMGIGGRSALFQA--GP--N---LWAVENFAAVAKYPSG--QIIGQDLFASGVFETAT 309 (711)
Q Consensus 248 ~--------~-~~~v~a~inLD~~G~gG~~~lfqt--g~--~---~~l~~~~~~~a~~p~~--~~l~~~~f~~g~ips~T 309 (711)
+ . .++|..+|.++.+|..+...+|.- ++ + ..+.+...+..+.+.. ....+..=....+|..+
T Consensus 81 ~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~LPPsS 160 (234)
T PF05450_consen 81 PSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLASSNIVIKKASSSNPPLPPSS 160 (234)
T ss_pred cccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhccccccceeccccCCCCCCcch
Confidence 2 0 158999999999998775334321 11 1 2233333332222221 11121111223467766
Q ss_pred chHHHhhcCCceEEEEeeeCC---CCCCCCCCCCcCCCCH
Q 005157 310 DFQVYTEVAGLSGLDFAYTDK---SAVYHTKNDRLDLLKP 346 (711)
Q Consensus 310 D~~~F~~~~GIPgld~a~~~~---~~~YHT~~Dt~d~i~~ 346 (711)
=++..++..++||+-++-.+. ..+||+.+|+.++++.
T Consensus 161 ~~sFLr~~~~i~~vVLtd~~~~f~N~~y~S~~D~~~ni~~ 200 (234)
T PF05450_consen 161 LQSFLRKDPNIPGVVLTDHDSQFTNKYYNSILDDAENINF 200 (234)
T ss_pred HHHHHccCCCCCEEEecCCCcccccCCccCcccChhhhcC
Confidence 555555544899999886554 3479999999999876
No 31
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.28 E-value=3.3e-10 Score=123.03 Aligned_cols=226 Identities=19% Similarity=0.251 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEE
Q 005157 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (711)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (711)
++..+.|++|+++ +-+.|.+ +++++|++++|++... +++.| +..||+
T Consensus 2 ~~~~~~LkeL~~~-~gpsG~E--~eVr~~~~~el~~~~~------ev~~D------------------------~lGnli 48 (355)
T COG1363 2 EELLELLKELLEA-PGPSGYE--EEVRDVLKEELEPLGD------EVEVD------------------------RLGNLI 48 (355)
T ss_pred hHHHHHHHHHHcC-CCCCCcH--HHHHHHHHHHHHHhCC------ceEEc------------------------CCCcEE
Confidence 3567889999985 4445544 4689999999999873 34443 568999
Q ss_pred EEEcCCCCCCCCCCeEEEeecCcccCCC----------------------------------------------------
Q 005157 167 LRILPKYASEAGENAILVSSHIDTVSAG---------------------------------------------------- 194 (711)
Q Consensus 167 ~~i~g~~~~~~~~~~Vll~aH~DSv~~s---------------------------------------------------- 194 (711)
++++|+ ...+.|++.||+|.+..-
T Consensus 49 a~~~g~----~g~~~imi~AHmDEiG~mV~~I~~~G~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~ 124 (355)
T COG1363 49 AKKGGK----NGPPKVMIAAHMDEIGFMVKEIEDDGFLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKE 124 (355)
T ss_pred EEecCC----CCCccEEEEeecceeeeeEEEECCCceEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccCc
Confidence 999874 244569999999987520
Q ss_pred -------------------------------CC--------------------CCCChhHHHHHHHHHHHHHhcCCCCCC
Q 005157 195 -------------------------------EG--------------------AGDCSSCVAVMLELARVMSQWAHEFKN 223 (711)
Q Consensus 195 -------------------------------pG--------------------A~Dd~sGva~~LE~ar~L~~~~~~~~~ 223 (711)
+| |-||..||++++|++|.| + +..++.
T Consensus 125 ~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v~~~~~~~~l~~~~i~skalDdR~gva~lle~lk~l-~-~~~~~~ 202 (355)
T COG1363 125 EAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFVVFDPRFRELANGRVVSKALDDRAGVAALLELLKEL-K-GIELPA 202 (355)
T ss_pred cccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEEEEcCceEEecCCcEEeeeccchHhHHHHHHHHHHh-c-cCCCCc
Confidence 22 789999999999999999 4 578999
Q ss_pred cEEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeecCcCCCCc--------------cccc--cCC-CHHHHHHHHHH
Q 005157 224 AVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIGGRS--------------ALFQ--AGP-NLWAVENFAAV 286 (711)
Q Consensus 224 ~I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~~G~gG~~--------------~lfq--tg~-~~~l~~~~~~~ 286 (711)
+++|+|+.-||.|+.||+....+- +...+|.+|..+.+... +... +++ ++.+.+...+.
T Consensus 203 ~vy~v~tvqEEVGlrGA~~~a~~i----~pd~aiavd~~~~~d~~~~~~~~~~lg~Gp~i~~~D~~~~~~~~l~~~L~~~ 278 (355)
T COG1363 203 DVYFVASVQEEVGLRGAKTSAFRI----KPDIAIAVDVTPAGDTPGVPKGDVKLGKGPVIRVKDASGIYHPKLRKFLLEL 278 (355)
T ss_pred eEEEEEecchhhccchhhcccccc----CCCEEEEEecccccCCCCCcccccccCCCCEEEEEcCCCCCCHHHHHHHHHH
Confidence 999999999999999999887322 33577888877765431 1122 122 56666665554
Q ss_pred ccCCCCcccccccccCCCCCCCCchHHHhhc-CCceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 005157 287 AKYPSGQIIGQDLFASGVFETATDFQVYTEV-AGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTAS 365 (711)
Q Consensus 287 a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~~La~ 365 (711)
++. .+...-.++++. ..||-..+... .|+|...+... ..+-|++ .+.++.+.+.++.+.+.+++..+..
T Consensus 279 A~~-~~Ip~Q~~v~~~----ggTDA~a~~~~g~gvpta~Igip--~ry~Hs~---~e~~~~~D~~~~~~Ll~~~i~~~~~ 348 (355)
T COG1363 279 AEK-NNIPYQVDVSPG----GGTDAGAAHLTGGGVPTALIGIP--TRYIHSP---VEVAHLDDLEATVKLLVAYLESLDR 348 (355)
T ss_pred HHH-cCCCeEEEecCC----CCccHHHHHHcCCCCceEEEecc--cccccCc---ceeecHHHHHHHHHHHHHHHHhcch
Confidence 422 121111223321 47888877652 57999887642 2245775 4678889999988888888877654
No 32
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.28 E-value=7.4e-11 Score=130.31 Aligned_cols=149 Identities=19% Similarity=0.218 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHhhccccCCcce-EEEEeeeccCCCcccccccccCcccccccc
Q 005157 87 LEAMKHVKALTQLGPHAVGS---DALDRALQYVLAASQKIKESKHWEAD-VEVDFFHAKSGANRVGTGVFKGKTLIYSDL 162 (711)
Q Consensus 87 erA~~~L~~L~~igpr~~GS---~~~~~a~~yL~~~l~~ig~~~~~~~~-vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~ 162 (711)
+++.+.|++|.++..- .+. .++.++.+||.++|+++|. + ++.. ...+.. ......
T Consensus 5 ~~~~~~l~~lv~i~s~-s~~~~~~~e~~~~~~l~~~l~~~G~------~~~~~~--~~~~~~------------~~~~~~ 63 (400)
T PRK13983 5 DEMIELLSELIAIPAV-NPDFGGEGEKEKAEYLESLLKEYGF------DEVERY--DAPDPR------------VIEGVR 63 (400)
T ss_pred HHHHHHHHHHhCcCCC-CCCCCCccHHHHHHHHHHHHHHcCC------ceEEEE--ecCCcc------------cccCCC
Confidence 5788999999987432 111 2356899999999999983 3 3321 110000 000114
Q ss_pred ceEEEEEcCCCCCCCCCCeEEEeecCcccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCC
Q 005157 163 NHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEF 221 (711)
Q Consensus 163 ~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~---------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~ 221 (711)
.|++++++|. .+.+.|++++|+|+||. ++|+.||+.|++++|++++.|.+.+.++
T Consensus 64 ~nl~~~~~g~----~~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~ 139 (400)
T PRK13983 64 PNIVAKIPGG----DGKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRP 139 (400)
T ss_pred ccEEEEecCC----CCCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCC
Confidence 8999999764 23468999999999985 3789999999999999999999877788
Q ss_pred CCcEEEEEeCCCCCCCc-chHHHHhcCCC-cCCceEEEEee
Q 005157 222 KNAVIFLFNTGEEEGLN-GAHSFVTQHPW-STTIRVAVDLE 260 (711)
Q Consensus 222 ~~~I~flf~~~EE~gl~-GS~~f~~~h~~-~~~v~a~inLD 260 (711)
+++|.|+|..+||.|.. |++.+.++++. .....+++..|
T Consensus 140 ~~~v~~~~~~dEE~g~~~g~~~~~~~~~~~~~~~d~~i~~~ 180 (400)
T PRK13983 140 KYNLGLAFVSDEETGSKYGIQYLLKKHPELFKKDDLILVPD 180 (400)
T ss_pred CCcEEEEEEeccccCCcccHHHHHhhcccccCCCCEEEEec
Confidence 99999999999998884 89999865432 12234444433
No 33
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.28 E-value=1.5e-10 Score=124.56 Aligned_cols=240 Identities=20% Similarity=0.222 Sum_probs=131.7
Q ss_pred CCCHHHHHHHHHHHHh----cCCCCCCCHHH-H--HHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCc
Q 005157 83 GFSELEAMKHVKALTQ----LGPHAVGSDAL-D--RALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGK 155 (711)
Q Consensus 83 ~fs~erA~~~L~~L~~----igpr~~GS~~~-~--~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~ 155 (711)
..+-++..+||..+-+ |+.|+.--..+ . .+. ++++++.+ .+++|.+|.... +|
T Consensus 56 ~lsl~eL~~Hl~tlp~~PdaIPY~TsYY~~~WGFCl~~----~~~~~L~d---g~Y~V~IdS~l~-~G------------ 115 (386)
T PF09940_consen 56 TLSLEELKKHLHTLPDQPDAIPYRTSYYKRRWGFCLSH----NQLDALPD---GEYEVVIDSTLE-DG------------ 115 (386)
T ss_dssp EEEHHHHGGGEE--TTSTT--B--B-SSS----EE--H----HHHHT--S---SEEEEEEEEEEE-S-------------
T ss_pred EEeHHHHHhhhccCCCCCCccceeeecccCCcccccCH----HHHhhCCC---CceEEEEeeeec-CC------------
Confidence 4678888888888765 33343321111 1 111 23333332 346777664321 11
Q ss_pred cccccccceEEEEEcCCCCCCCCCCeEEEeecCcccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCC
Q 005157 156 TLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEE 235 (711)
Q Consensus 156 ~~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~ 235 (711)
.+.|.+ ..++|+ +++.|++++|.+|.. -|+||.||++++.+++|.|++. +.+.+.+|+|-.
T Consensus 116 ~L~ygE-----~~ipG~-----s~~EillsthiCHPs---mANdnLSG~~v~~~La~~L~~~--~~rytYRflf~P---- 176 (386)
T PF09940_consen 116 SLTYGE-----FVIPGE-----SDEEILLSTHICHPS---MANDNLSGPAVLTFLAKWLKQL--PNRYTYRFLFVP---- 176 (386)
T ss_dssp EEEEEE-----EEE--S-----SS-EEEEEEE----S----TTTTHHHHHHHHHHHHHHTTS----SSEEEEEEE-----
T ss_pred ceeEEE-----EEecCC-----CCCeEEEEEeccCcc---cccccccHHHHHHHHHHHHhcC--CcCceEEEEEcc----
Confidence 223333 345664 667899999999975 6999999999999999999985 445899999886
Q ss_pred CCcchHHHHhcCCC--cCCceEEEEeecCcCCCCccccccCC-CHHHHHHHHHHccCCCCcccccccccCCCCCCCCchH
Q 005157 236 GLNGAHSFVTQHPW--STTIRVAVDLEAMGIGGRSALFQAGP-NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQ 312 (711)
Q Consensus 236 gl~GS~~f~~~h~~--~~~v~a~inLD~~G~gG~~~lfqtg~-~~~l~~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~ 312 (711)
+..||-.|..+|.. .+++++.++|+++|..|.-...++-. +...-++.....++-.... ..+ ...|.++|.|
T Consensus 177 eTIGsI~yLskn~~~l~~~v~~G~vLtcvGD~~~~syk~Sr~g~~~iDr~~~~vl~~~~~~~---~~~--~F~~~GsDER 251 (386)
T PF09940_consen 177 ETIGSITYLSKNLDELKKNVKAGLVLTCVGDDGAYSYKRSRRGNTLIDRAAAHVLKHSGPNF---KIY--DFLPRGSDER 251 (386)
T ss_dssp TTHHHHHHHHH-GGGGGG-EEEEEE--S--SSS-EEEE--TTSSSHHHHHHHHHHHHSSS-E---EEE-----S-SSTHH
T ss_pred ccHHHHHHHHHCHHHHhhheeeeEEEEEecCCCCcceecCCCCCcHHHHHHHHHHHhcCCCc---eEe--cccccCCCcc
Confidence 57999999998864 34599999999999887544333211 2323333333322211110 111 2356789999
Q ss_pred HHhhcC-CceEEEEeeeCC--CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 005157 313 VYTEVA-GLSGLDFAYTDK--SAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 366 (711)
Q Consensus 313 ~F~~~~-GIPgld~a~~~~--~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~~La~~ 366 (711)
+|..-+ ++|...+.-... -+.|||+.|+++.|+++.|+..-+.+..++..|-+.
T Consensus 252 QfcSPG~dLPv~~~~Rs~yg~ypEYHTS~Dnl~fi~p~~L~~s~~~~~~~i~~lE~n 308 (386)
T PF09940_consen 252 QFCSPGFDLPVGSLMRSKYGEYPEYHTSLDNLDFISPEGLEGSFEVLLEAIEILENN 308 (386)
T ss_dssp HHTSTTT---EEEEESS-TT--TTTTBTTSSGGG--HHHHHHHHHHHHHHHHHHHH-
T ss_pred eeecCCcCCceeeeecccccCCcccccCCCccccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 999821 356555543322 247999999999999999999999999988887664
No 34
>PRK08201 hypothetical protein; Provisional
Probab=99.27 E-value=6.6e-11 Score=133.73 Aligned_cols=148 Identities=17% Similarity=0.190 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccc
Q 005157 85 SELEAMKHVKALTQLGPHAVG---SDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSD 161 (711)
Q Consensus 85 s~erA~~~L~~L~~igpr~~G---S~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~ 161 (711)
..+++.+.|++|.+|..-..+ ..++.++.+||.++|++++.+ .++++. . .+
T Consensus 12 ~~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~-----~~~~~~--~-------------------~~ 65 (456)
T PRK08201 12 RREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLE-----HVEIME--T-------------------AG 65 (456)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCC-----eEEEEe--c-------------------CC
Confidence 347788999999987432211 123457899999999998721 133321 1 02
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecCcccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCC
Q 005157 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHE 220 (711)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~---------------------spGA~Dd~sGva~~LE~ar~L~~~~~~ 220 (711)
..||++++.|. ++.+.|++++|+|+||. ++|+.|+|.|+|+++++++.|.+.+..
T Consensus 66 ~~~l~a~~~~~----~~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~ 141 (456)
T PRK08201 66 HPIVYADWLHA----PGKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGT 141 (456)
T ss_pred CCEEEEEecCC----CCCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCC
Confidence 35899988653 24578999999999874 389999999999999999999876556
Q ss_pred CCCcEEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeecC
Q 005157 221 FKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (711)
Q Consensus 221 ~~~~I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~~ 262 (711)
++++|.|++..+||.|..|+..++++++..-+..++|+.|..
T Consensus 142 ~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~ii~e~~ 183 (456)
T PRK08201 142 LPVNVKFCIEGEEEIGSPNLDSFVEEEKDKLAADVVLISDTT 183 (456)
T ss_pred CCCCEEEEEEcccccCCccHHHHHHhhHHhccCCEEEEeCCC
Confidence 778999999999999999999998765321123456666643
No 35
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.27 E-value=4.9e-11 Score=135.71 Aligned_cols=136 Identities=17% Similarity=0.311 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceE
Q 005157 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (711)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (711)
.+|+++.|++|.++ |++ |.+++++++|+.+++++.| ++++.+ ...|+
T Consensus 3 ~~~~~~~l~~l~~i-~s~--s~~e~~~~~~l~~~l~~~G------~~~~~~------------------------~~~n~ 49 (477)
T TIGR01893 3 PSRVFKYFEEISKI-PRP--SKNEKEVSNFIVNWAKKLG------LEVKQD------------------------EVGNV 49 (477)
T ss_pred HHHHHHHHHHHHcC-CCC--CccHHHHHHHHHHHHHHcC------CeEEEe------------------------CCCeE
Confidence 47899999999998 455 5556789999999999998 344432 23699
Q ss_pred EEEEcCCCCCCCCCCeEEEeecCcccCCC------------------------CCCC---CChhHHHHHHHHHHHHHhcC
Q 005157 166 VLRILPKYASEAGENAILVSSHIDTVSAG------------------------EGAG---DCSSCVAVMLELARVMSQWA 218 (711)
Q Consensus 166 i~~i~g~~~~~~~~~~Vll~aH~DSv~~s------------------------pGA~---Dd~sGva~~LE~ar~L~~~~ 218 (711)
+++++|... .++.+.|++++|+||||.. +|+. |++.|++++|++++. .
T Consensus 50 ~~~~~~~~g-~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~- 124 (477)
T TIGR01893 50 LIRKPATPG-YENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---N- 124 (477)
T ss_pred EEEEcCCCC-CCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---C-
Confidence 999986421 1345789999999999842 5653 999999999999875 2
Q ss_pred CCCCCcEEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeecC
Q 005157 219 HEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (711)
Q Consensus 219 ~~~~~~I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~~ 262 (711)
..++++|.++|+.+||.|+.||+.+..+. ......+|.|..
T Consensus 125 ~~~~~~i~~~~~~dEE~g~~Gs~~l~~~~---~~~~~~~~~d~~ 165 (477)
T TIGR01893 125 NLKHPPLELLFTVDEETGMDGALGLDENW---LSGKILINIDSE 165 (477)
T ss_pred CCCCCCEEEEEEeccccCchhhhhcChhh---cCCcEEEEecCC
Confidence 23567999999999999999999997422 233678888854
No 36
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.26 E-value=7.1e-11 Score=128.83 Aligned_cols=133 Identities=22% Similarity=0.232 Sum_probs=102.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccce
Q 005157 85 SELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (711)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (711)
-++++.+.|++|.++.. + |.++.++.+|+.++++++| ++++.+ +..|
T Consensus 4 ~~~~~~~~l~~Lv~i~s-~--s~~e~~~~~~l~~~l~~~G------~~~~~~------------------------~~~n 50 (348)
T PRK04443 4 SALEARELLKGLVEIPS-P--SGEEAAAAEFLVEFMESHG------REAWVD------------------------EAGN 50 (348)
T ss_pred chHHHHHHHHHHHcCCC-C--CCChHHHHHHHHHHHHHcC------CEEEEc------------------------CCCc
Confidence 45789999999999732 2 3345689999999999998 334331 2358
Q ss_pred EEEEEcCCCCCCCCCCeEEEeecCcccCC------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCC
Q 005157 165 IVLRILPKYASEAGENAILVSSHIDTVSA------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTG 232 (711)
Q Consensus 165 Vi~~i~g~~~~~~~~~~Vll~aH~DSv~~------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~ 232 (711)
+++++.+ ..+.|++++|+|+||. ++|+.|+|+|+|+++++++.| + .+++++|.|++..+
T Consensus 51 ~i~~~~~------~~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~--~~~~~~i~~~~~~d 121 (348)
T PRK04443 51 ARGPAGD------GPPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E--ALVRARVSFVGAVE 121 (348)
T ss_pred EEEEcCC------CCCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c--ccCCCCEEEEEEcc
Confidence 8998732 2378999999999974 489999999999999999999 3 46788999999999
Q ss_pred CCCCCcchHHHHhcCCCcCCceEEEEeecC
Q 005157 233 EEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (711)
Q Consensus 233 EE~gl~GS~~f~~~h~~~~~v~a~inLD~~ 262 (711)
||.|..|...+..+.. ...++|+.|..
T Consensus 122 EE~g~~~~~~~l~~~~---~~d~~iv~Ept 148 (348)
T PRK04443 122 EEAPSSGGARLVADRE---RPDAVIIGEPS 148 (348)
T ss_pred cccCChhHHHHHHhcc---CCCEEEEeCCC
Confidence 9999887776664432 34567777743
No 37
>PRK07079 hypothetical protein; Provisional
Probab=99.24 E-value=1.1e-10 Score=132.62 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHH----HHHhhccccCCcceEEEEeeeccCCCcccccccccCcccc
Q 005157 84 FSELEAMKHVKALTQLGPHAVGSD-ALDRALQYVLA----ASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLI 158 (711)
Q Consensus 84 fs~erA~~~L~~L~~igpr~~GS~-~~~~a~~yL~~----~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~ 158 (711)
++++++.+.|++|.+|.. ..+.+ ++....+|+.+ +|+++| ++++. +....
T Consensus 14 ~~~~~~~~~L~~LV~ipS-vs~~~~~~~~~~~~l~~~~~~~l~~~G------~~~~~--~~~~~---------------- 68 (469)
T PRK07079 14 FDSGAFFADLARRVAYRT-ESQNPDRAPALRAYLTDEIAPALAALG------FTCRI--VDNPV---------------- 68 (469)
T ss_pred hccHHHHHHHHHHhccCC-CCCCcccHHHHHHHHHHHHHHHHHHCC------CeEEE--EecCC----------------
Confidence 455688999999999843 23322 23356666654 677665 33332 21110
Q ss_pred ccccceEEEEEcCCCCCCCCCCeEEEeecCcccCC----------------------CCCCCCChhHHHHHHHHHHHHHh
Q 005157 159 YSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA----------------------GEGAGDCSSCVAVMLELARVMSQ 216 (711)
Q Consensus 159 Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~----------------------spGA~Dd~sGva~~LE~ar~L~~ 216 (711)
..+..||++++.+. ++.+.|++++|+|+||. ++|+.|||+|++++|++++.|.+
T Consensus 69 ~~~~~~vva~~~~~----~~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~ 144 (469)
T PRK07079 69 AGGGPFLIAERIED----DALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLA 144 (469)
T ss_pred CCCCCEEEEEeCCC----CCCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHH
Confidence 01347999988543 24578999999999973 38999999999999999999875
Q ss_pred c-CCCCCCcEEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEee
Q 005157 217 W-AHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLE 260 (711)
Q Consensus 217 ~-~~~~~~~I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD 260 (711)
. +.+++++|.|++..+||.|..|++.++++++...+..++|+.|
T Consensus 145 ~~~~~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~d~~iv~e 189 (469)
T PRK07079 145 ARGGRLGFNVKLLIEMGEEIGSPGLAEVCRQHREALAADVLIASD 189 (469)
T ss_pred hcCCCCCCCEEEEEECccccCCccHHHHHHHhHHhcCCCEEEEeC
Confidence 3 3678899999999999999999999998764222234555555
No 38
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.22 E-value=1.5e-10 Score=125.50 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEEEEEcCCCCCCCCCCeEEEeecCcc
Q 005157 111 RALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPKYASEAGENAILVSSHIDT 190 (711)
Q Consensus 111 ~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DS 190 (711)
..++|+..+.+.++... ..++. .+ ...+++.+++|. ++..+.||+++|.|+
T Consensus 49 a~~~Fl~~~a~~l~l~~---~~i~~-----~p------------------~~~~~l~T~~GS---~P~L~silL~SH~DV 99 (420)
T KOG2275|consen 49 ACADFLKKYAKSLGLTV---QKIES-----EP------------------GKYVLLYTWLGS---DPELPSILLNSHTDV 99 (420)
T ss_pred HHHHHHHHHHHhcCCce---eEEEe-----cC------------------ceeEEEEEeeCC---CCCccceeeeccccc
Confidence 78999999999987421 11221 11 246889999986 467899999999999
Q ss_pred cCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCC-CcchHHHHhcCC
Q 005157 191 VSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEG-LNGAHSFVTQHP 248 (711)
Q Consensus 191 v~~---------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~g-l~GS~~f~~~h~ 248 (711)
||+ ++|+.|+++-++++||++|.|..+|.+|+|+|.+.|..+||.| ..|++.|++ +.
T Consensus 100 VP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~-~~ 178 (420)
T KOG2275|consen 100 VPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAK-TE 178 (420)
T ss_pred cCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhh-hh
Confidence 986 4899999999999999999999999999999999999999987 799999995 43
Q ss_pred CcCCceEEEEee
Q 005157 249 WSTTIRVAVDLE 260 (711)
Q Consensus 249 ~~~~v~a~inLD 260 (711)
..++....+.+|
T Consensus 179 ~~~~l~~~filD 190 (420)
T KOG2275|consen 179 EFKKLNLGFILD 190 (420)
T ss_pred hhcccceeEEec
Confidence 333344444444
No 39
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.21 E-value=1.3e-10 Score=126.84 Aligned_cols=128 Identities=27% Similarity=0.313 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEEE
Q 005157 88 EAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVL 167 (711)
Q Consensus 88 rA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~ 167 (711)
|.++.+++|.++.. .|.++.++.+||.++|+++| ++++.+. .... +.+..|+++
T Consensus 1 ~~~~~~~~l~~i~s---~s~~e~~~~~~l~~~l~~~g------~~~~~~~--~~~~---------------~~~~~~~~~ 54 (361)
T TIGR01883 1 RLKKYFLELIQIDS---ESGKEKAILTYLKKQITKLG------IPVSLDE--VPAE---------------VSNDNNLIA 54 (361)
T ss_pred ChHHHHHHHeecCC---CCCcHHHHHHHHHHHHHHcC------CEEEEec--cccc---------------cCCCceEEE
Confidence 46788999998732 23456689999999999998 3343321 1000 113579999
Q ss_pred EEcCCCCCCCCCCeEEEeecCcccCC--------------CCCC----CCChhHHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 005157 168 RILPKYASEAGENAILVSSHIDTVSA--------------GEGA----GDCSSCVAVMLELARVMSQWAHEFKNAVIFLF 229 (711)
Q Consensus 168 ~i~g~~~~~~~~~~Vll~aH~DSv~~--------------spGA----~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf 229 (711)
+++|+ .+.+.|++++|+|+||. ++|+ .|+++|+|++|++++.|.+.+ .++++|.|+|
T Consensus 55 ~~~g~----~~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~ 129 (361)
T TIGR01883 55 RLPGT----VKFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIF 129 (361)
T ss_pred EEeCC----CCCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEE
Confidence 99765 23478999999999984 3677 899999999999999998765 5678999999
Q ss_pred eCCCCCCCcchHHHHhc
Q 005157 230 NTGEEEGLNGAHSFVTQ 246 (711)
Q Consensus 230 ~~~EE~gl~GS~~f~~~ 246 (711)
+.+||.|..|++.+.++
T Consensus 130 ~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 130 TVKEELGLIGMRLFDES 146 (361)
T ss_pred EcccccCchhHhHhChh
Confidence 99999999999998753
No 40
>PRK05469 peptidase T; Provisional
Probab=99.21 E-value=1.6e-10 Score=128.83 Aligned_cols=127 Identities=14% Similarity=0.192 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhcCCCCCC------C-HHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccc
Q 005157 87 LEAMKHVKALTQLGPHAVG------S-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIY 159 (711)
Q Consensus 87 erA~~~L~~L~~igpr~~G------S-~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y 159 (711)
+.+.+.|+++.+|..-... | .+++++.+||+++|+++|.+ .++++
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~-----~~~~~----------------------- 53 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQ-----DVTLD----------------------- 53 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC-----eEEEC-----------------------
Confidence 3567889999887432211 1 44578999999999999831 12221
Q ss_pred cccceEEEEEcCCCCCCCCCCeEEEeecCcccCCC---------------------------------------------
Q 005157 160 SDLNHIVLRILPKYASEAGENAILVSSHIDTVSAG--------------------------------------------- 194 (711)
Q Consensus 160 ~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~s--------------------------------------------- 194 (711)
...||+++++|.. .++.+.|++.+|+|+||..
T Consensus 54 -~~~~v~~~~~g~~--~~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 130 (408)
T PRK05469 54 -ENGYVMATLPANV--DKDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLIT 130 (408)
T ss_pred -CCeEEEEEecCCC--CCCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEE
Confidence 2358999997641 1346899999999999642
Q ss_pred -CCC----CCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcchHHHHh
Q 005157 195 -EGA----GDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVT 245 (711)
Q Consensus 195 -pGA----~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~GS~~f~~ 245 (711)
+|+ .|||+|+|+|+.+++.|++.+..++.+|+|+|..+||.| .|++.++.
T Consensus 131 ~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~~~~g~v~~~f~~dEE~g-~Ga~~~~~ 185 (408)
T PRK05469 131 TDGTTLLGADDKAGIAEIMTALEYLIAHPEIKHGDIRVAFTPDEEIG-RGADKFDV 185 (408)
T ss_pred cCCCEeecccchHHHHHHHHHHHHHHhCCCCCCCCEEEEEecccccC-CCHHHhhh
Confidence 365 999999999999999998866567789999999999998 89998863
No 41
>PRK06915 acetylornithine deacetylase; Validated
Probab=99.21 E-value=2.5e-10 Score=127.61 Aligned_cols=145 Identities=23% Similarity=0.269 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceE
Q 005157 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (711)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (711)
.+++.+.+++|.++ |-+ |.++.++.+||.++|+++| +++++. ....... .....+......+....||
T Consensus 16 ~~~~~~~l~~lv~i-ps~--s~~e~~~~~~l~~~l~~~G------~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~nl 83 (422)
T PRK06915 16 EEEAVKLLKRLIQE-KSV--SGDESGAQAIVIEKLRELG------LDLDIW--EPSFKKL-KDHPYFVSPRTSFSDSPNI 83 (422)
T ss_pred HHHHHHHHHHHHhC-CCC--CcchHHHHHHHHHHHHhcC------CeeEEe--ecchhhh-hcccccCCcccccCCCceE
Confidence 46788999999986 332 4455788999999999998 333322 1110000 0000000000011245899
Q ss_pred EEEEcCCCCCCCCCCeEEEeecCcccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCc
Q 005157 166 VLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (711)
Q Consensus 166 i~~i~g~~~~~~~~~~Vll~aH~DSv~~---------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~ 224 (711)
+++++|. .+.+.|++++|+|+||. ++|+.|+++|++++|.+++.|++.+.+++.+
T Consensus 84 ia~~~g~----~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~ 159 (422)
T PRK06915 84 VATLKGS----GGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGD 159 (422)
T ss_pred EEEEcCC----CCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCc
Confidence 9999764 23478999999999985 3899999999999999999999877778889
Q ss_pred EEEEEeCCCCCCCcchHHHHhc
Q 005157 225 VIFLFNTGEEEGLNGAHSFVTQ 246 (711)
Q Consensus 225 I~flf~~~EE~gl~GS~~f~~~ 246 (711)
|.|+|..+||.|..|+...+.+
T Consensus 160 v~~~~~~dEE~g~~G~~~~~~~ 181 (422)
T PRK06915 160 VIFQSVIEEESGGAGTLAAILR 181 (422)
T ss_pred EEEEEecccccCCcchHHHHhc
Confidence 9999999999988898887743
No 42
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.21 E-value=2.2e-10 Score=124.60 Aligned_cols=132 Identities=28% Similarity=0.316 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhh-ccccCCcceEEEEeeeccCCCcccccccccCccccccccceE
Q 005157 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKI-KESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (711)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~i-g~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (711)
+++.+.+++|.++ |.+ |.++.++.+||.++++++ + .+++. ...|+
T Consensus 7 ~~~~~~l~~li~i-ps~--s~~e~~~~~~l~~~l~~~~~------~~~~~-------------------------~~~~~ 52 (352)
T PRK13007 7 ADLAELTAALVDI-PSV--SGDEKALADAVEAALRALPH------LEVIR-------------------------HGNSV 52 (352)
T ss_pred HHHHHHHHHHhcC-CCC--CchHHHHHHHHHHHHHhCcC------ceEEe-------------------------cCCeE
Confidence 6788999999986 343 344568899999999986 4 22221 12589
Q ss_pred EEEEcCCCCCCCCCCeEEEeecCcccCC--------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeC
Q 005157 166 VLRILPKYASEAGENAILVSSHIDTVSA--------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNT 231 (711)
Q Consensus 166 i~~i~g~~~~~~~~~~Vll~aH~DSv~~--------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~ 231 (711)
++++.+. +.+.|++++|+|+||. ++|+.|+++|+|++|.+++.|. +++++|.|+|.+
T Consensus 53 ~~~~~~~-----~~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~~ 123 (352)
T PRK13007 53 VARTDLG-----RPSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFYD 123 (352)
T ss_pred EEEccCC-----CCCeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEEe
Confidence 9998432 2246999999999985 4899999999999999999993 367899999999
Q ss_pred CCCCCC--cchHHHHhcCCCcCCceEEEEeec
Q 005157 232 GEEEGL--NGAHSFVTQHPWSTTIRVAVDLEA 261 (711)
Q Consensus 232 ~EE~gl--~GS~~f~~~h~~~~~v~a~inLD~ 261 (711)
+||.|. .|+..++.+++...+...+++.|.
T Consensus 124 ~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~ep 155 (352)
T PRK13007 124 CEEVEAEANGLGRLAREHPEWLAGDFAILLEP 155 (352)
T ss_pred cccccCCcccHHHHHHhcccccCCCEEEEecC
Confidence 999864 588888866654445677888775
No 43
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.20 E-value=2e-10 Score=126.50 Aligned_cols=141 Identities=17% Similarity=0.225 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEE
Q 005157 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (711)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (711)
.++.+.|++|.+|. .+.+. ++.++.+||.++|+++| ++++.. .... ....||+
T Consensus 4 ~~~~~~l~~lv~i~-S~s~~-~~~~~~~~l~~~l~~~G------~~~~~~--~~~~-----------------~~~~nv~ 56 (385)
T PRK07522 4 MSSLDILERLVAFD-TVSRD-SNLALIEWVRDYLAAHG------VESELI--PDPE-----------------GDKANLF 56 (385)
T ss_pred hhHHHHHHHHhCCC-CcCCC-ccHHHHHHHHHHHHHcC------CeEEEE--ecCC-----------------CCcccEE
Confidence 45788999999973 33332 22488999999999998 333331 1100 1347999
Q ss_pred EEEcCCCCCCCCCCeEEEeecCcccCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEE
Q 005157 167 LRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226 (711)
Q Consensus 167 ~~i~g~~~~~~~~~~Vll~aH~DSv~~--------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~ 226 (711)
++++++ ..+.|++.+|+|+||. ++|+.|+++|+|++|++++.|.+. +++++|.
T Consensus 57 a~~~~~-----~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~ 129 (385)
T PRK07522 57 ATIGPA-----DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PLRRPLH 129 (385)
T ss_pred EEeCCC-----CCCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CCCCCEE
Confidence 998542 2468999999999974 389999999999999999999875 4678999
Q ss_pred EEEeCCCCCCCcchHHHHhcCCC-cCCceEEEEeec
Q 005157 227 FLFNTGEEEGLNGAHSFVTQHPW-STTIRVAVDLEA 261 (711)
Q Consensus 227 flf~~~EE~gl~GS~~f~~~h~~-~~~v~a~inLD~ 261 (711)
|+|..+||.|..|++.++++... ..+...++..|.
T Consensus 130 ~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~i~~ep 165 (385)
T PRK07522 130 LAFSYDEEVGCLGVPSMIARLPERGVKPAGCIVGEP 165 (385)
T ss_pred EEEEeccccCCccHHHHHHHhhhcCCCCCEEEEccC
Confidence 99999999988999999865322 112344555443
No 44
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.20 E-value=1.8e-10 Score=130.65 Aligned_cols=128 Identities=15% Similarity=0.217 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCC---------CHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCc
Q 005157 85 SELEAMKHVKALTQLGPHAVG---------SDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGK 155 (711)
Q Consensus 85 s~erA~~~L~~L~~igpr~~G---------S~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~ 155 (711)
..+++.+.|++|.+|..-..+ -+++.++.+|+.+++++.| ++++.
T Consensus 12 ~~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G------~~~~~-------------------- 65 (466)
T PRK07318 12 RKDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDG------FKTKN-------------------- 65 (466)
T ss_pred hHHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCC------CEEEE--------------------
Confidence 346788899999988542211 1235689999999999987 23321
Q ss_pred cccccccceEEEEEcCCCCCCCCCCeEEEeecCcccCC-------------------CCCCCCChhHHHHHHHHHHHHHh
Q 005157 156 TLIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQ 216 (711)
Q Consensus 156 ~~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~-------------------spGA~Dd~sGva~~LE~ar~L~~ 216 (711)
..|++++++.. +..+.|++++|+|+||. ++|+.||+.|+++++.+++.|++
T Consensus 66 ------~~n~~~~~~~~----~~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~ 135 (466)
T PRK07318 66 ------VDNYAGHIEYG----EGEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKE 135 (466)
T ss_pred ------ecCccceEEEC----CCCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHH
Confidence 12555555432 13467999999999985 38999999999999999999998
Q ss_pred cCCCCCCcEEEEEeCCCCCCCcchHHHHhcCC
Q 005157 217 WAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHP 248 (711)
Q Consensus 217 ~~~~~~~~I~flf~~~EE~gl~GS~~f~~~h~ 248 (711)
.+.+++++|.|+|+.+||.|..|++.++++++
T Consensus 136 ~g~~~~~~i~l~~~~DEE~g~~G~~~l~~~~~ 167 (466)
T PRK07318 136 LGLPLSKKVRFIVGTDEESGWKCMDYYFEHEE 167 (466)
T ss_pred cCCCCCccEEEEEEcccccCchhHHHHHHhCC
Confidence 87778889999999999999999999997654
No 45
>PRK13381 peptidase T; Provisional
Probab=99.20 E-value=2.3e-10 Score=127.26 Aligned_cols=125 Identities=17% Similarity=0.280 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcCCCC-------CCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccc
Q 005157 89 AMKHVKALTQLGPHA-------VGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSD 161 (711)
Q Consensus 89 A~~~L~~L~~igpr~-------~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~ 161 (711)
+.+.+.++.+|.... ..+++++++++||.++|+++|.+ .+++| +
T Consensus 3 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~-----~~~~~------------------------~ 53 (404)
T PRK13381 3 LTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLE-----DIVID------------------------E 53 (404)
T ss_pred HHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCC-----cEEEc------------------------C
Confidence 566777887763322 12455678999999999999831 11211 2
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecCcccCCC----------------------------------------------C
Q 005157 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSAG----------------------------------------------E 195 (711)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~s----------------------------------------------p 195 (711)
..||+++++|++ +..+.|++++|+|+||.. +
T Consensus 54 ~~nvi~~~~g~~---~~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gr 130 (404)
T PRK13381 54 HAIVTAKLPGNT---PGAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSD 130 (404)
T ss_pred CeEEEEEEecCC---CCCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCC
Confidence 359999997641 233889999999999743 3
Q ss_pred CC----CCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcchHHHHhc
Q 005157 196 GA----GDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (711)
Q Consensus 196 GA----~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~GS~~f~~~ 246 (711)
|+ .|+++|+|++|.+++.|.+.+ .++.+|.|+|..+||.|..|++.++.+
T Consensus 131 G~~~~g~DmKgg~aa~l~a~~~l~~~~-~~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 131 GTSVLGADNKAAIAVVMTLLENLTENE-VEHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred CccccccccHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccccccHHHHHHh
Confidence 67 999999999999999998764 457799999999999999999999744
No 46
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=99.20 E-value=1.4e-09 Score=118.76 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=91.3
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeecCcC--------CCCc
Q 005157 197 AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGI--------GGRS 268 (711)
Q Consensus 197 A~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~~G~--------gG~~ 268 (711)
+.||++||+++++++|.|.+.+.+++.+++|+|+..||.| .|+.. ....+...+|.+|.... .|+.
T Consensus 181 ~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG-~gaa~-----~i~pd~a~~i~vd~~~~~p~~~~lg~Gp~ 254 (343)
T TIGR03106 181 HLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVG-SGASH-----ALPPDVAELVSVDNGTVAPGQNSSEHGVT 254 (343)
T ss_pred ecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccC-ccchh-----cccHhhhccEEEEecccCCCCCcCCCCce
Confidence 5999999999999999999876678899999999999999 56321 11123334466664322 1222
Q ss_pred cccc-cC-C-CHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHHhh-cCCceEEEEeeeCCCCCCCCCCCCcCCC
Q 005157 269 ALFQ-AG-P-NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTE-VAGLSGLDFAYTDKSAVYHTKNDRLDLL 344 (711)
Q Consensus 269 ~lfq-tg-~-~~~l~~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~d~i 344 (711)
+-.. .+ + ++.+.+...+.++. .+...-.+++.. .+||-..+.. ..|+|...++. +..+-|| .|.+
T Consensus 255 i~~~d~~~~~~~~l~~~l~~~A~~-~~Ip~Q~~~~~~----~gtDa~~~~~~~~Gi~t~~i~i--P~Ry~Hs----~e~~ 323 (343)
T TIGR03106 255 IAMADSSGPFDYHLTRKLIRLCQD-HGIPHRRDVFRY----YRSDAASAVEAGHDIRTALVTF--GLDASHG----YERT 323 (343)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHH-cCCCcEEEecCC----CCChHHHHHHcCCCCCEEEeec--cccchhh----hhhc
Confidence 2112 12 2 67777766665432 222112233321 2455554433 26999988753 2223577 6888
Q ss_pred CHHHHHHHHHHHHHHH
Q 005157 345 KPGSLQHLGENMLDFL 360 (711)
Q Consensus 345 ~~~sLq~~g~~vl~ll 360 (711)
+.+.++++.+.+.+++
T Consensus 324 ~~~D~~~~~~Ll~~~~ 339 (343)
T TIGR03106 324 HIDALEALANLLVAYA 339 (343)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999998887766655
No 47
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.19 E-value=3.2e-10 Score=127.22 Aligned_cols=146 Identities=18% Similarity=0.139 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccce
Q 005157 85 SELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (711)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (711)
+.+++.+.|++|.+|.. -|.++.++.+||.++|+++|. +++....... ......+ .......+.+..|
T Consensus 18 ~~~~~~~~l~~li~ipS---~s~~e~~~~~~l~~~l~~~G~------~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~n 85 (427)
T PRK06837 18 GFDAQVAFTQDLVRFPS---TRGAEAPCQDFLARAFRERGY------EVDRWSIDPD-DLKSHPG--AGPVEIDYSGAPN 85 (427)
T ss_pred hhHHHHHHHHHHhccCC---CCCcHHHHHHHHHHHHHHCCC------ceEEecCCHH-Hhhhccc--ccccccccCCCce
Confidence 34677788889988732 244556899999999999983 3332110000 0000000 0000112235689
Q ss_pred EEEEEcCCCCCCCCCCeEEEeecCcccCCC---------------------CCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 005157 165 IVLRILPKYASEAGENAILVSSHIDTVSAG---------------------EGAGDCSSCVAVMLELARVMSQWAHEFKN 223 (711)
Q Consensus 165 Vi~~i~g~~~~~~~~~~Vll~aH~DSv~~s---------------------pGA~Dd~sGva~~LE~ar~L~~~~~~~~~ 223 (711)
|+++++|. .++.+.|++.+|+|+||.+ +|+.|+++|++++|.+++.|++.+.++++
T Consensus 86 l~a~~~g~---~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~ 162 (427)
T PRK06837 86 VVGTYRPA---GKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAA 162 (427)
T ss_pred EEEEecCC---CCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999874 2345789999999999863 59999999999999999999988777899
Q ss_pred cEEEEEeCCCCCCCcchHHHHh
Q 005157 224 AVIFLFNTGEEEGLNGAHSFVT 245 (711)
Q Consensus 224 ~I~flf~~~EE~gl~GS~~f~~ 245 (711)
+|.|+|+.+||.+..|+...+.
T Consensus 163 ~i~~~~~~dEE~~g~g~~~~~~ 184 (427)
T PRK06837 163 RVHFQSVIEEESTGNGALSTLQ 184 (427)
T ss_pred cEEEEEEeccccCCHhHHHHHh
Confidence 9999999999988888877663
No 48
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.19 E-value=3.4e-10 Score=129.06 Aligned_cols=138 Identities=16% Similarity=0.269 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccc
Q 005157 84 FSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLN 163 (711)
Q Consensus 84 fs~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~ 163 (711)
...++.++.+++|++| |++.+ .++++.+||.++++++| ++++.| ...
T Consensus 7 ~~~~~~~~~l~~Lv~i-ps~S~--~e~~~~~~l~~~~~~~G------~~~~~d------------------------~~g 53 (485)
T PRK15026 7 LSPQPLWDIFAKICSI-PHPSY--HEEQLAEYIVGWAKEKG------FHVERD------------------------QVG 53 (485)
T ss_pred cCHHHHHHHHHHHhCC-CCCCC--CHHHHHHHHHHHHHhCC------CEEEEE------------------------ecC
Confidence 4578899999999997 56544 44589999999999988 344443 236
Q ss_pred eEEEEEcCCCCCCCCCCeEEEeecCcccCC------------------------CCCC---CCChhHHHHHHHHHHHHHh
Q 005157 164 HIVLRILPKYASEAGENAILVSSHIDTVSA------------------------GEGA---GDCSSCVAVMLELARVMSQ 216 (711)
Q Consensus 164 NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~------------------------spGA---~Dd~sGva~~LE~ar~L~~ 216 (711)
|+++++++.. +.+..+.|++.+|+|+|+. ++|+ .||++|+|++|++++ +
T Consensus 54 nvi~~~~~~~-g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l~---~ 129 (485)
T PRK15026 54 NILIRKPATA-GMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLA---D 129 (485)
T ss_pred eEEEEEcCCC-CCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHHH---h
Confidence 8999886531 1134578999999999974 1677 499999999988763 3
Q ss_pred cCCCCCCcEEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeecC
Q 005157 217 WAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (711)
Q Consensus 217 ~~~~~~~~I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~~ 262 (711)
.+. ++.+|.++|+.+||.|+.|++.+.. . ..+.++++|+|..
T Consensus 130 ~~~-~~~~i~~l~t~dEE~G~~ga~~l~~--~-~~~~~~~i~~e~~ 171 (485)
T PRK15026 130 ENV-VHGPLEVLLTMTEEAGMDGAFGLQS--N-WLQADILINTDSE 171 (485)
T ss_pred CCC-CCCCEEEEEEcccccCcHhHHHhhh--c-cCCcCEEEEeCCC
Confidence 333 4778999999999999999999863 2 2457899999875
No 49
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.19 E-value=2.3e-10 Score=124.85 Aligned_cols=124 Identities=21% Similarity=0.279 Sum_probs=94.2
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEEEEEcC
Q 005157 92 HVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILP 171 (711)
Q Consensus 92 ~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g 171 (711)
.|++|.+|.. +.+. ++.++.+||.++|+++| ++++.+. ...+ .+..|+++++.+
T Consensus 2 ~l~~lv~i~S-~s~~-~~~~~~~~l~~~l~~~G------~~~~~~~--~~~~----------------~~~~nl~~~~~~ 55 (364)
T TIGR01892 2 ILTKLVAFDS-TSFR-PNVDLIDWAQAYLEALG------FSVEVQP--FPDG----------------AEKSNLVAVIGP 55 (364)
T ss_pred hHHHhhCcCC-cCCc-cHHHHHHHHHHHHHHcC------CeEEEEe--CCCC----------------CccccEEEEecC
Confidence 4677887632 2232 23578999999999998 3444432 1100 135799999854
Q ss_pred CCCCCCCCCeEEEeecCcccCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeC
Q 005157 172 KYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNT 231 (711)
Q Consensus 172 ~~~~~~~~~~Vll~aH~DSv~~--------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~ 231 (711)
+ +.+.|++.+|+|+||. ++|+.|+++|++++|.+++.|.+. +++++|.|+|..
T Consensus 56 ~-----~~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~ 128 (364)
T TIGR01892 56 S-----GAGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QLKKPLHLALTA 128 (364)
T ss_pred C-----CCCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--CcCCCEEEEEEe
Confidence 2 3467999999999974 389999999999999999999874 467899999999
Q ss_pred CCCCCCcchHHHHhcCC
Q 005157 232 GEEEGLNGAHSFVTQHP 248 (711)
Q Consensus 232 ~EE~gl~GS~~f~~~h~ 248 (711)
+||.|..|++.++++..
T Consensus 129 ~EE~g~~G~~~~~~~~~ 145 (364)
T TIGR01892 129 DEEVGCTGAPKMIEAGA 145 (364)
T ss_pred ccccCCcCHHHHHHhcC
Confidence 99999999999996554
No 50
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.18 E-value=2.9e-10 Score=123.87 Aligned_cols=128 Identities=21% Similarity=0.214 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEE
Q 005157 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (711)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (711)
+++.+.|++|.+|.. .|.+++++.+||.++++++| ++++.+ ...|.+
T Consensus 10 ~~~~~~l~~lv~i~s---~s~~e~~~~~~l~~~l~~~g------~~~~~~------------------------~~~~~~ 56 (346)
T PRK00466 10 QKAKELLLDLLSIYT---PSGNETNATKFFEKISNELN------LKLEIL------------------------PDSNSF 56 (346)
T ss_pred HHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHHcC------CeEEEe------------------------cCCCcE
Confidence 688999999999843 24455789999999999998 334432 112443
Q ss_pred EEEcCCCCCCCCCCeEEEeecCcccCC------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q 005157 167 LRILPKYASEAGENAILVSSHIDTVSA------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEE 234 (711)
Q Consensus 167 ~~i~g~~~~~~~~~~Vll~aH~DSv~~------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE 234 (711)
+ .|+ +.|++++|+||||. ++|+.||+.|+|+++++++.|.+.+ .++.|+|+.+||
T Consensus 57 ~--~g~-------~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dEE 123 (346)
T PRK00466 57 I--LGE-------GDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADEE 123 (346)
T ss_pred e--cCC-------CeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCcc
Confidence 2 221 35999999999985 3999999999999999999998754 358999999999
Q ss_pred CCCcchHHHHhcCCCcCCceEEEEeecCc
Q 005157 235 EGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (711)
Q Consensus 235 ~gl~GS~~f~~~h~~~~~v~a~inLD~~G 263 (711)
.|..|++.+++++. +...++..|..+
T Consensus 124 ~g~~G~~~l~~~~~---~~d~~i~~ep~~ 149 (346)
T PRK00466 124 STSIGAKELVSKGF---NFKHIIVGEPSN 149 (346)
T ss_pred cCCccHHHHHhcCC---CCCEEEEcCCCC
Confidence 99899999996542 245666666443
No 51
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.17 E-value=3.2e-10 Score=120.08 Aligned_cols=170 Identities=18% Similarity=0.158 Sum_probs=121.4
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecCcccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC----
Q 005157 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGL---- 237 (711)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl---- 237 (711)
..|+|+.=. ..++.++++||.|||. -|+.||-.|+++..|+++.|...+ ..+-++.|++||.|+
T Consensus 178 ~y~~Ia~~~------~en~vv~i~AH~DHW~--~G~tDN~lg~~~AV~~~~~lr~~~----~~~~lv~FtAEE~g~p~~~ 245 (486)
T COG4882 178 DYNVIAVDG------GENGVVLIGAHLDHWY--TGFTDNILGVAQAVETAGRLRGRG----LAAGLVVFTAEEHGMPGMA 245 (486)
T ss_pred EEEEEEecC------CCCCceEEeechhhhh--hcccchhhhHHHHHHHHHHHhhcC----cceeEEEEeccccCCCCCc
Confidence 456666321 2457899999999998 599999999999999999998753 456678889999876
Q ss_pred -----cchHHHHhcCCCcCCceEEEEeecCcCCCCccccccCCCHHHHHHHHHHccCCCCcccccccccCCCCCCCCchH
Q 005157 238 -----NGAHSFVTQHPWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQ 312 (711)
Q Consensus 238 -----~GS~~f~~~h~~~~~v~a~inLD~~G~gG~~~lfqtg~~~~l~~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~ 312 (711)
.||+.|.++.+..+++.+.+|+|.+|.+-.. + ..-|.+++.-.+.-+.... ..+. -+|-.
T Consensus 246 sfyWa~GSr~~lk~~k~~~~v~~~VN~Dv~g~~~lv-~---~~~P~L~e~~~~~g~~~ve---spe~--------y~Ds~ 310 (486)
T COG4882 246 SFYWAAGSRGLLKESKAAEEVEAYVNFDVAGYRCLV-A---SGAPQLVEHALEAGAVEVE---SPEP--------YCDSI 310 (486)
T ss_pred ceeecccchHHHhhcCCchhhhheeccccccccchh-h---hcChHHHHHHHHhCCceec---CCCc--------ccchh
Confidence 3899999888888899999999999975422 1 2246777766664221111 1222 25666
Q ss_pred HHhhcCCceEEEEeeeCC---CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 005157 313 VYTEVAGLSGLDFAYTDK---SAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTAS 365 (711)
Q Consensus 313 ~F~~~~GIPgld~a~~~~---~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~~La~ 365 (711)
.+.. .|||.+.+....+ +..|||+.||+. ..+. .-+++..+..+.+
T Consensus 311 ~y~~-aGiPS~Ti~SL~~~~~~e~yh~p~Dtpa--~~~n----~~t~~d~a~r~v~ 359 (486)
T COG4882 311 MYAW-AGIPSLTIHSLWCPGVQEAYHTPRDTPA--SWDN----AWTAVDAAVRTVT 359 (486)
T ss_pred hhhh-cCCCeeEeeeccCCCccceecCCCCCch--hHHH----HHHHHHHHHHHHh
Confidence 6776 8999999987664 357999999993 2233 3345555566654
No 52
>PRK07205 hypothetical protein; Provisional
Probab=99.17 E-value=4e-10 Score=126.99 Aligned_cols=127 Identities=18% Similarity=0.231 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCC--------HHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCcc
Q 005157 85 SELEAMKHVKALTQLGPHAVGS--------DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKT 156 (711)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS--------~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~ 156 (711)
+.+++.+.|++|.+|..- .+. ++-.++.+|+.++++++| ++++++ .
T Consensus 9 ~~~~~~~~l~~lv~i~S~-s~~~~~~~~~~~~~~~~~~~~~~~l~~~g------~~~~~~----~--------------- 62 (444)
T PRK07205 9 VQDACVAAIKTLVSYPSV-LNEGENGTPFGQAIQDVLEATLDLCQGLG------FKTYLD----P--------------- 62 (444)
T ss_pred hHHHHHHHHHHHcccccc-cCCCcCCCCCchhHHHHHHHHHHHHHhCC------CEEEEc----C---------------
Confidence 567888999999987431 221 223578899999999987 334332 0
Q ss_pred ccccccceEEEEEcCCCCCCCCCCeEEEeecCcccCC---------------------CCCCCCChhHHHHHHHHHHHHH
Q 005157 157 LIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMS 215 (711)
Q Consensus 157 ~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~---------------------spGA~Dd~sGva~~LE~ar~L~ 215 (711)
...|+++++ |. .++.|++++|+|+||. ++|+.|+|.|+|++|++++.|.
T Consensus 63 ----~~~~~~~~~-g~-----~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~ 132 (444)
T PRK07205 63 ----KGYYGYAEI-GQ-----GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALL 132 (444)
T ss_pred ----CCeEEEEEe-cC-----CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHH
Confidence 112455554 32 3367999999999985 3899999999999999999999
Q ss_pred hcCCCCCCcEEEEEeCCCCCCCcchHHHHhcC
Q 005157 216 QWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQH 247 (711)
Q Consensus 216 ~~~~~~~~~I~flf~~~EE~gl~GS~~f~~~h 247 (711)
+.+.+++++|.|+|.++||.|..|++.|.++.
T Consensus 133 ~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~ 164 (444)
T PRK07205 133 DAGVQFNKRIRFIFGTDEETLWRCMNRYNEVE 164 (444)
T ss_pred HcCCCCCCcEEEEEECCcccCcccHHHHHhCC
Confidence 88878889999999999999999999998643
No 53
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.17 E-value=3.3e-10 Score=122.78 Aligned_cols=130 Identities=25% Similarity=0.283 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEE
Q 005157 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (711)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (711)
|++.+.+++|.++. -+ |.++.++.+||.++|+++| ++++.+. . .+..|++
T Consensus 2 ~~~~~~~~~lv~ip-s~--s~~e~~~~~~l~~~l~~~G------~~v~~~~--~-------------------~~~~~~~ 51 (347)
T PRK08652 2 ERAKELLKQLVKIP-SP--SGQEDEIALHIMEFLESLG------YDVHIES--D-------------------GEVINIV 51 (347)
T ss_pred hhHHHHHHHHhcCC-CC--CCchHHHHHHHHHHHHHcC------CEEEEEe--c-------------------CceeEEE
Confidence 67889999999973 33 3345689999999999998 3444321 0 0235666
Q ss_pred EEEcCCCCCCCCCCeEEEeecCcccCC------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q 005157 167 LRILPKYASEAGENAILVSSHIDTVSA------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEE 234 (711)
Q Consensus 167 ~~i~g~~~~~~~~~~Vll~aH~DSv~~------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE 234 (711)
+ + +.+.|++.+|+|+||. ++|+.|+++|+|++|++++.|.+. .++++|.|+|..+||
T Consensus 52 ~---~------~~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~dEE 120 (347)
T PRK08652 52 V---N------SKAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE--FEDLNVGIAFVSDEE 120 (347)
T ss_pred c---C------CCCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc--ccCCCEEEEEecCcc
Confidence 5 2 1367999999999985 489999999999999999999864 346799999999999
Q ss_pred CCCcchHHHHhcCCCcCCceEEEEeec
Q 005157 235 EGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (711)
Q Consensus 235 ~gl~GS~~f~~~h~~~~~v~a~inLD~ 261 (711)
.|..|++.++++++. ..++..|.
T Consensus 121 ~g~~G~~~~~~~~~~----d~~i~~ep 143 (347)
T PRK08652 121 EGGRGSALFAERYRP----KMAIVLEP 143 (347)
T ss_pred cCChhHHHHHHhcCC----CEEEEecC
Confidence 988999999965431 45666664
No 54
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.16 E-value=1.5e-10 Score=114.04 Aligned_cols=165 Identities=23% Similarity=0.298 Sum_probs=115.7
Q ss_pred EEeecCcccCC-------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCc-chHH
Q 005157 183 LVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLN-GAHS 242 (711)
Q Consensus 183 ll~aH~DSv~~-------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~-GS~~ 242 (711)
++.+|+|+||. ++|+.|++.|+++++.+++.|++.+.+++++|.|+|..+||.|.. |++.
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~ 80 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKH 80 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhh
Confidence 68999999992 589999999999999999999987889999999999999999998 9999
Q ss_pred HHhcC-CCcCCceEEEEeecCcCCCCccccccCCCHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHHhh--cCC
Q 005157 243 FVTQH-PWSTTIRVAVDLEAMGIGGRSALFQAGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTE--VAG 319 (711)
Q Consensus 243 f~~~h-~~~~~v~a~inLD~~G~gG~~~lfqtg~~~~l~~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~--~~G 319 (711)
++++. ....+....+..|..+.+.-. +..++.+.+...++.+...+... .....+..||...|.+ ..+
T Consensus 81 l~~~~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~g~tD~~~~~~~~~~~ 151 (189)
T PF01546_consen 81 LLEEGAFFGLHPDYVIIGEPTGKGGVG----SDNDPPLVQALQAAAQEVGGEPP-----EPVASGGGTDAGFLAEVKGLG 151 (189)
T ss_dssp HHHHCEEEEEEESEEEECECETTSEEE----HCTCHHHHHHHHHHHHHTTSSEE-----EEEEESSSSTHHHHHCHHHTT
T ss_pred hhhhccccccccccccccccccccccc----ccccHHHHHHHHHHHHHHhhccc-----cccceeccccchhhhhhhccc
Confidence 99753 112235566666654432210 22356566666655433332111 1113467899999995 368
Q ss_pred ceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Q 005157 320 LSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLL 361 (711)
Q Consensus 320 IPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~ 361 (711)
+|.+.+.... ...|++. |+++.+.+....+.+..+++
T Consensus 152 ~~~i~~G~~~--~~~H~~~---E~i~~~~l~~~~~~~~~~l~ 188 (189)
T PF01546_consen 152 IPAIGFGPGG--SNAHTPD---EYIDIEDLVKGAKIYAALLE 188 (189)
T ss_dssp EEEEEEESCE--ESTTSTT----EEEHHHHHHHHHHHHHHHH
T ss_pred cceeeeCCCC--CCCCCCC---cEecHHHHHHHHHHHHHHHh
Confidence 8888765433 5678855 56778888888887777664
No 55
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.16 E-value=3.5e-10 Score=126.33 Aligned_cols=128 Identities=16% Similarity=0.191 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhcCCCCC-------CCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccc
Q 005157 87 LEAMKHVKALTQLGPHAV-------GSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIY 159 (711)
Q Consensus 87 erA~~~L~~L~~igpr~~-------GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y 159 (711)
+|+.+.+-++++|..... .+..+++.+++|.++|+++|.+ ++++|
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~-----~v~~d----------------------- 54 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQ-----DAHYD----------------------- 54 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCc-----eEEEc-----------------------
Confidence 678888888888743211 1224457999999999999931 25543
Q ss_pred cccceEEEEEcCCCCCCCCCCeEEEeecCcccCC----------------------------------------------
Q 005157 160 SDLNHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------------------------------- 193 (711)
Q Consensus 160 ~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~---------------------------------------------- 193 (711)
.+..||+++++|.. ....+.|++.||+|||+.
T Consensus 55 ~~~gnv~~~~~~~~--~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 132 (410)
T TIGR01882 55 EKNGYVIATIPSNT--DKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLIT 132 (410)
T ss_pred CCceEEEEEecCCC--CCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEE
Confidence 13689999997742 112489999999999973
Q ss_pred CCC----CCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcchHHHHh
Q 005157 194 GEG----AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVT 245 (711)
Q Consensus 194 spG----A~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~GS~~f~~ 245 (711)
+.| +.||++|+|+||++++.|++.+..++.+|.|+|+.+||.| .|++.+..
T Consensus 133 ~~g~~l~G~D~KgglAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 133 TDGTTLLGADDKAGIAEIMTAADYLINHPEIKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred cCCCEeecccCHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECcccCC-cCcchhhh
Confidence 112 3799999999999999998854345789999999999987 59988863
No 56
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.15 E-value=6.9e-10 Score=122.24 Aligned_cols=128 Identities=21% Similarity=0.311 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCH-----HHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccc
Q 005157 87 LEAMKHVKALTQLGPHAVGSD-----ALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSD 161 (711)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~-----~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~ 161 (711)
++..+.+++|.++.. ..+.+ ++.++.+||.++|++++ ++++.+. .. + ..+
T Consensus 5 ~~~i~~l~~lv~i~s-~s~~e~~~~~~~~~~~~~l~~~l~~~g------~~~~~~~--~~-~---------------~~~ 59 (383)
T PRK05111 5 PSFIEMYRALIATPS-ISATDPALDQSNRAVIDLLAGWFEDLG------FNVEIQP--VP-G---------------TRG 59 (383)
T ss_pred hHHHHHHHHHhCcCC-cCCCCcccccchHHHHHHHHHHHHHCC------CeEEEEe--cC-C---------------CCC
Confidence 578899999998743 22221 23579999999999998 3444321 10 0 013
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecCcccCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCC
Q 005157 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHEF 221 (711)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~--------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~ 221 (711)
..|+++++ |+ ..+.|++.+|+|+||. ++|+.|++++++++|++++.|.+. .+
T Consensus 60 ~~nvia~~-g~-----~~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~ 131 (383)
T PRK05111 60 KFNLLASL-GS-----GEGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--KL 131 (383)
T ss_pred CceEEEEe-CC-----CCCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--CC
Confidence 46999998 43 1246999999999973 489999999999999999999864 45
Q ss_pred CCcEEEEEeCCCCCCCcchHHHHhcC
Q 005157 222 KNAVIFLFNTGEEEGLNGAHSFVTQH 247 (711)
Q Consensus 222 ~~~I~flf~~~EE~gl~GS~~f~~~h 247 (711)
+++|.|+|.++||.|..|++.++++.
T Consensus 132 ~~~i~~~~~~~EE~g~~G~~~~~~~~ 157 (383)
T PRK05111 132 KKPLYILATADEETSMAGARAFAEAT 157 (383)
T ss_pred CCCeEEEEEeccccCcccHHHHHhcC
Confidence 68899999999999999999999654
No 57
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.14 E-value=7.4e-10 Score=122.45 Aligned_cols=149 Identities=15% Similarity=0.192 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccc
Q 005157 85 SELEAMKHVKALTQLGPHAVGS-DALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLN 163 (711)
Q Consensus 85 s~erA~~~L~~L~~igpr~~GS-~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~ 163 (711)
..+++.+.|++|.+|..- ..+ .++.++.+||.++|+++| ++++.+. ...+. . .. ......
T Consensus 4 ~~~~~~~~l~~lv~i~S~-s~~~~~~~~~a~~l~~~l~~~G------~~~~~~~--~~~~~-------~-~~--~~~~~~ 64 (394)
T PRK08651 4 MMFDIVEFLKDLIKIPTV-NPPGENYEEIAEFLRDTLEELG------FSTEIIE--VPNEY-------V-KK--HDGPRP 64 (394)
T ss_pred hHHHHHHHHHHHhcCCcc-CCCCcCHHHHHHHHHHHHHHcC------CeEEEEe--cCccc-------c-cc--ccCCcc
Confidence 457889999999998432 112 344689999999999998 3444332 11110 0 00 001146
Q ss_pred eEEEEEcCCCCCCCCCCeEEEeecCcccCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 005157 164 HIVLRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKN 223 (711)
Q Consensus 164 NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~--------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~ 223 (711)
|++++. +. .++.|++.+|+|+||. ++|+.||+.|++++|++++.|.+.+ ++
T Consensus 65 ~~~~~~-~~-----~~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~ 135 (394)
T PRK08651 65 NLIARR-GS-----GNPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---DG 135 (394)
T ss_pred eEEEEe-CC-----CCceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---CC
Confidence 788864 22 2378999999999975 2788999999999999999998754 78
Q ss_pred cEEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeecCc
Q 005157 224 AVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG 263 (711)
Q Consensus 224 ~I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~~G 263 (711)
+|.|+|..+||.|..|++.++++... +...++..|..|
T Consensus 136 ~v~~~~~~~EE~g~~G~~~~~~~~~~--~~d~~i~~~~~~ 173 (394)
T PRK08651 136 NIELAIVPDEETGGTGTGYLVEEGKV--TPDYVIVGEPSG 173 (394)
T ss_pred CEEEEEecCccccchhHHHHHhccCC--CCCEEEEecCCC
Confidence 99999999999988999999965532 134555555444
No 58
>PRK06156 hypothetical protein; Provisional
Probab=99.14 E-value=1.3e-09 Score=125.34 Aligned_cols=138 Identities=14% Similarity=0.191 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHhcCCC-CCC-----CHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCcccc
Q 005157 85 SELEAMKHVKALTQLGPH-AVG-----SDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLI 158 (711)
Q Consensus 85 s~erA~~~L~~L~~igpr-~~G-----S~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~ 158 (711)
..+++.+.|++|.+|..- +.+ .++.....+||.+++++.|. +++.
T Consensus 44 ~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~------~~~~----------------------- 94 (520)
T PRK06156 44 YGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGL------DYRN----------------------- 94 (520)
T ss_pred hHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCC------eEEe-----------------------
Confidence 456788899999987431 111 12224567999999998872 2221
Q ss_pred ccccceEE-EEEcCCCCCCCCCCeEEEeecCcccCC-------------------------CCCCCCChhHHHHHHHHHH
Q 005157 159 YSDLNHIV-LRILPKYASEAGENAILVSSHIDTVSA-------------------------GEGAGDCSSCVAVMLELAR 212 (711)
Q Consensus 159 Y~~~~NVi-~~i~g~~~~~~~~~~Vll~aH~DSv~~-------------------------spGA~Dd~sGva~~LE~ar 212 (711)
..+|++ ++++|+ ..+.|++++|+|+||. ++|+.|++.|+++++++++
T Consensus 95 --~~~~v~~~~~~g~-----~~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~ 167 (520)
T PRK06156 95 --VDNRVLEIGLGGS-----GSDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMK 167 (520)
T ss_pred --cCCeEEEEEecCC-----CCCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHH
Confidence 012444 666653 2368999999999973 2789999999999999999
Q ss_pred HHHhcCCCCCCcEEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeec
Q 005157 213 VMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEA 261 (711)
Q Consensus 213 ~L~~~~~~~~~~I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~ 261 (711)
.|.+.+.+++++|.|+|+.+||.|..|++.+..++. ....++|+|+
T Consensus 168 ~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~~~~~D~ 213 (520)
T PRK06156 168 AIKDSGLPLARRIELLVYTTEETDGDPLKYYLERYT---PPDYNITLDA 213 (520)
T ss_pred HHHHcCCCCCceEEEEEecccccCchhHHHHHHhcC---CCCeEEeeCC
Confidence 998877778899999999999999999999996543 2356677775
No 59
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=99.12 E-value=4.3e-09 Score=115.16 Aligned_cols=149 Identities=21% Similarity=0.183 Sum_probs=100.4
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeecCcCC-----------
Q 005157 197 AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGIG----------- 265 (711)
Q Consensus 197 A~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~~G~g----------- 265 (711)
|-||..||++++|++|.+++. +++.+++++|+.-||.|+.||+.-+.+.+ ...+|.+|..-.+
T Consensus 176 alDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~i~----pD~aI~vDv~~~~d~~~~~~~~lg 249 (350)
T TIGR03107 176 AWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTKFN----PDIFFAVDCSPAGDIYGDQGGKLG 249 (350)
T ss_pred ccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhhCC----CCEEEEEecCCcCCCCCCCccccC
Confidence 789999999999999999863 57889999999999999999997663322 2367777755332
Q ss_pred -CCccccc-cCC--CHHHHHHHHHHccCCCCcccccccccCCCCCCCCchH--HHhhcCCceEEEEeeeCCCCCCCCCCC
Q 005157 266 -GRSALFQ-AGP--NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQ--VYTEVAGLSGLDFAYTDKSAVYHTKND 339 (711)
Q Consensus 266 -G~~~lfq-tg~--~~~l~~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~--~F~~~~GIPgld~a~~~~~~~YHT~~D 339 (711)
|+.+.+. .++ ++.+.+...+.++. .+.. .|.... ..+||-. .+.. .|+|.+.++- +..+-||+.
T Consensus 250 ~Gp~i~~~D~~~i~~~~l~~~l~~~A~~-~~I~-~Q~~~~----~gGtDa~~~~~~~-~Gvpt~~i~i--p~Ry~Hs~~- 319 (350)
T TIGR03107 250 EGTLLRFFDPGHIMLPRMKDFLLTTAEE-AGIK-YQYYVA----KGGTDAGAAHLKN-SGVPSTTIGV--CARYIHSHQ- 319 (350)
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHH-cCCC-cEEecC----CCCchHHHHHHhC-CCCcEEEEcc--CcccccChh-
Confidence 3333122 233 67777776665432 1111 121111 1245555 6665 7999998853 222468865
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHH
Q 005157 340 RLDLLKPGSLQHLGENMLDFLLQT 363 (711)
Q Consensus 340 t~d~i~~~sLq~~g~~vl~ll~~L 363 (711)
+.++.+.++++.+.+.+++..+
T Consensus 320 --e~i~~~D~~~~~~Ll~~~i~~l 341 (350)
T TIGR03107 320 --TLYSIDDFLAAQAFLQAIVKKL 341 (350)
T ss_pred --heeeHHHHHHHHHHHHHHHHhc
Confidence 6678899999999888888765
No 60
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.12 E-value=6.3e-10 Score=122.10 Aligned_cols=122 Identities=16% Similarity=0.207 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEEE
Q 005157 88 EAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVL 167 (711)
Q Consensus 88 rA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~ 167 (711)
++.+.+++|.++. .-|..++++.+||.++|+++| ++++.. .. .+..|+++
T Consensus 3 ~~~~~l~~Lv~ip---s~s~~e~~~~~~l~~~l~~~G------~~~~~~--~~-------------------~~~~n~~~ 52 (375)
T PRK13009 3 DVLELAQDLIRRP---SVTPDDAGCQDLLAERLEALG------FTCERM--DF-------------------GDVKNLWA 52 (375)
T ss_pred hHHHHHHHHhCCC---CCCCchhhHHHHHHHHHHHcC------CeEEEe--cc-------------------CCCcEEEE
Confidence 4567888888852 234455788999999999987 333321 11 13469999
Q ss_pred EEcCCCCCCCCCCeEEEeecCcccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEE
Q 005157 168 RILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVI 226 (711)
Q Consensus 168 ~i~g~~~~~~~~~~Vll~aH~DSv~~---------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~ 226 (711)
++ |. +.+.|++++|+|+||. ++|+.||++|+++++++++.+.+.+.+++++|+
T Consensus 53 ~~-g~-----~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~ 126 (375)
T PRK13009 53 RR-GT-----EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIA 126 (375)
T ss_pred Ee-cC-----CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 87 42 3478999999999985 268999999999999999999887777889999
Q ss_pred EEEeCCCCCCC-cchHHHHh
Q 005157 227 FLFNTGEEEGL-NGAHSFVT 245 (711)
Q Consensus 227 flf~~~EE~gl-~GS~~f~~ 245 (711)
|+|..+||.+. .|++.+++
T Consensus 127 ~~~~~~EE~~~~~G~~~~~~ 146 (375)
T PRK13009 127 FLITSDEEGPAINGTVKVLE 146 (375)
T ss_pred EEEEeecccccccCHHHHHH
Confidence 99999999854 69998874
No 61
>PRK09961 exoaminopeptidase; Provisional
Probab=99.11 E-value=4.4e-09 Score=114.98 Aligned_cols=219 Identities=16% Similarity=0.204 Sum_probs=146.7
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEEEEEc
Q 005157 91 KHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRIL 170 (711)
Q Consensus 91 ~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~ 170 (711)
+.|++|+++ +-+.| .++++++++.+++++++. ++++| +..|+++++.
T Consensus 4 ~~L~~L~~~-~s~sG--~E~~v~~~i~~~l~~~~~------~v~~D------------------------~~Gnvi~~~~ 50 (344)
T PRK09961 4 SLLKALSEA-DAIAS--SEQEVRQILLEEADRLQK------EVRFD------------------------GLGSVLIRLN 50 (344)
T ss_pred HHHHHHHhC-CCCCC--ChHHHHHHHHHHHHhhCC------EEEEC------------------------CCCCEEEEEc
Confidence 458888885 44444 446899999999999872 34432 4578999876
Q ss_pred CCCCCCCCCCeEEEeecCcccCCC--------------------------------------------------------
Q 005157 171 PKYASEAGENAILVSSHIDTVSAG-------------------------------------------------------- 194 (711)
Q Consensus 171 g~~~~~~~~~~Vll~aH~DSv~~s-------------------------------------------------------- 194 (711)
|+ +.+.|++.||+|+++.-
T Consensus 51 g~-----~~~~v~l~aHmDevg~~V~~I~~~G~l~~~~vGG~~~~~~~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~i 125 (344)
T PRK09961 51 ES-----TGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLNGDRQGNDVSAMRV 125 (344)
T ss_pred CC-----CCCEEEEEeccceeceEEEEECCCceEEEEeCCCccccccCCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEE
Confidence 53 23479999999987620
Q ss_pred ------------------------------------CCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCc
Q 005157 195 ------------------------------------EGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLN 238 (711)
Q Consensus 195 ------------------------------------pGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~ 238 (711)
..+-||..||++++|++|.+++. +++.+++|+|+..||.|+.
T Consensus 126 DiG~~s~ee~~~~GI~~Gd~v~~~~~~~~~~~~~i~gkalDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~r 203 (344)
T PRK09961 126 DIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLR 203 (344)
T ss_pred EcCCCCHHHHHhcCCCCCCEEEEcceeEEecCCEEEEeechhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchH
Confidence 23799999999999999999753 5789999999999999999
Q ss_pred chHHHHhcCCCcCCceEEEEeecCcCC---------------CCccccc-cCC--CHHHHHHHHHHccCCCCcccccccc
Q 005157 239 GAHSFVTQHPWSTTIRVAVDLEAMGIG---------------GRSALFQ-AGP--NLWAVENFAAVAKYPSGQIIGQDLF 300 (711)
Q Consensus 239 GS~~f~~~h~~~~~v~a~inLD~~G~g---------------G~~~lfq-tg~--~~~l~~~~~~~a~~p~~~~l~~~~f 300 (711)
||+..+.+. +...+|.+|..-.. |+.+-+. .++ ++.+.+...+.++. .+...-.+.+
T Consensus 204 Ga~~aa~~i----~pd~~I~vDv~~~~d~~~~~~~~~~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~-~~Ip~Q~~~~ 278 (344)
T PRK09961 204 GGQTATRAV----SPDVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAE-IGIPLQADMF 278 (344)
T ss_pred HHHHHHhcc----CCCEEEEEeccCCCCCCCCCCCcccccCCCceEEEccCCcCCCHHHHHHHHHHHHH-cCCCcEEEec
Confidence 999887432 23457777765332 2221111 122 56677666665432 1111111112
Q ss_pred cCCCCCCCCchHHHhhc-CCceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 005157 301 ASGVFETATDFQVYTEV-AGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQT 363 (711)
Q Consensus 301 ~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~~L 363 (711)
. ..+||-..|... .|+|.+.+..- .. +-||+. |.++.+.+.++.+.+.+++..+
T Consensus 279 ~----ggGTDa~~~~~~~~Giptv~ig~p-~r-y~Hs~~---E~v~~~D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 279 S----NGGTDGGAVHLTGTGVPTVVMGPA-TR-HGHCAA---SIADCRDILQMIQLLSALIQRL 333 (344)
T ss_pred C----CCcchHHHHHHhCCCCCEEEechh-hh-cccChh---heEEHHHHHHHHHHHHHHHHHc
Confidence 1 235888866542 68999988643 22 458854 6788888999888888877554
No 62
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.10 E-value=1.1e-09 Score=121.79 Aligned_cols=145 Identities=20% Similarity=0.251 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEE
Q 005157 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (711)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (711)
+++.+.|+++.++.... ..++.++++|+.++|++++. .++.+..... .+..|++
T Consensus 13 ~~~~~~l~~lv~~~s~s--~~~~~~~~~~l~~~l~~~g~------~~~~~~~~~~------------------~~~~n~~ 66 (409)
T COG0624 13 DDILELLKELVRIPSVS--AGEEAEAAELLAEWLEELGF------EVEEDEVGPG------------------PGRPNLV 66 (409)
T ss_pred HHHHHHHHHHhcCCCCC--cccchHHHHHHHHHHHHcCC------ceEEeecCCC------------------CCceEEE
Confidence 45567888888863322 36667999999999999883 3444321100 0346999
Q ss_pred EEEcCCCCCCCCCCeEEEeecCcccCCC---------------------CCCCCChhHHHHHHHHHHHHHhcCCCCCCcE
Q 005157 167 LRILPKYASEAGENAILVSSHIDTVSAG---------------------EGAGDCSSCVAVMLELARVMSQWAHEFKNAV 225 (711)
Q Consensus 167 ~~i~g~~~~~~~~~~Vll~aH~DSv~~s---------------------pGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I 225 (711)
+++.+. +.++.|++++|+|+||.+ +|+.||+.++++++.+++.+.+.+..++.+|
T Consensus 67 ~~~~~~----~~~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v 142 (409)
T COG0624 67 ARLGGG----DGGPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDV 142 (409)
T ss_pred EEecCC----CCCCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEE
Confidence 999875 233899999999999863 8999999999999999999999777889999
Q ss_pred EEEEeCCCCCCCcchHHHHhcCCC--cCCceEEEEeec
Q 005157 226 IFLFNTGEEEGLNGAHSFVTQHPW--STTIRVAVDLEA 261 (711)
Q Consensus 226 ~flf~~~EE~gl~GS~~f~~~h~~--~~~v~a~inLD~ 261 (711)
.+++..+||.|..|...+..++.. ..+..+.+..|.
T Consensus 143 ~~~~~~dEE~g~~~~~~~~~~~~~~~~~~~d~~i~~E~ 180 (409)
T COG0624 143 RLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEP 180 (409)
T ss_pred EEEEEeccccCCcchHHHHHhcchhhccCCCEEEeCCC
Confidence 999999999999999999976642 345667777776
No 63
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=99.10 E-value=8.4e-10 Score=125.36 Aligned_cols=127 Identities=14% Similarity=0.155 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhcCCCCC---------CCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCcc
Q 005157 86 ELEAMKHVKALTQLGPHAV---------GSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKT 156 (711)
Q Consensus 86 ~erA~~~L~~L~~igpr~~---------GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~ 156 (711)
.+++.+.|++|.++..-.. ...+..++.+|+.+.++++| ++++..
T Consensus 12 ~~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G------~~~~~~-------------------- 65 (466)
T TIGR01886 12 KDALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDG------FTTKNF-------------------- 65 (466)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCC------CeEEEe--------------------
Confidence 3567888899988743211 12345678999999999998 333321
Q ss_pred ccccccceEEEEEcCCCCCCCCCCeEEEeecCcccCC-------------------CCCCCCChhHHHHHHHHHHHHHhc
Q 005157 157 LIYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQW 217 (711)
Q Consensus 157 ~~Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~-------------------spGA~Dd~sGva~~LE~ar~L~~~ 217 (711)
.|+++++.+. ++++.|++.+|+|+||. ++|+.||+.|+++++.+++.|++.
T Consensus 66 ------~~~~~~~~~~----~~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~ 135 (466)
T TIGR01886 66 ------DNYAGHVEYG----AGDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKEL 135 (466)
T ss_pred ------cCCceeEEec----CCCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHh
Confidence 1222222221 23578999999999975 489999999999999999999988
Q ss_pred CCCCCCcEEEEEeCCCCCCCcchHHHHhcCC
Q 005157 218 AHEFKNAVIFLFNTGEEEGLNGAHSFVTQHP 248 (711)
Q Consensus 218 ~~~~~~~I~flf~~~EE~gl~GS~~f~~~h~ 248 (711)
+.+++++|.|+|..+||.|..|++.++++++
T Consensus 136 ~~~~~~~i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 136 GLPPSKKIRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred CCCCCCCEEEEEECccccCcccHHHHHhcCc
Confidence 8888999999999999999999999997654
No 64
>PRK08554 peptidase; Reviewed
Probab=99.09 E-value=1.7e-09 Score=121.90 Aligned_cols=141 Identities=16% Similarity=0.222 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccce
Q 005157 88 EAMKHVKALTQLGPHAVG---SDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (711)
Q Consensus 88 rA~~~L~~L~~igpr~~G---S~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (711)
++.+.|++|.++.....+ ..+..++.+|+.+++++.| ++++.. .. .+..|
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G------~~~~~~--~~-------------------~~~~~ 54 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWG------IESELI--EK-------------------DGYYA 54 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCC------CeEEEE--ec-------------------CCceE
Confidence 356788889887442211 2234689999999999988 333321 11 02368
Q ss_pred EEEEEcCCCCCCCCCCeEEEeecCcccCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCc
Q 005157 165 IVLRILPKYASEAGENAILVSSHIDTVSA--------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (711)
Q Consensus 165 Vi~~i~g~~~~~~~~~~Vll~aH~DSv~~--------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~ 224 (711)
+++++. + .++.|++.+|+|+||. ++|+.|+++|++++|.+++.|.+. .++++
T Consensus 55 l~~~~~-~-----~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~~~~~ 126 (438)
T PRK08554 55 VYGEIG-E-----GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--PLNGK 126 (438)
T ss_pred EEEEeC-C-----CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc--CCCCC
Confidence 888863 2 2367999999999975 399999999999999999999874 36788
Q ss_pred EEEEEeCCCCCCCcchHHHHhcCC-CcCCceEEEEeecCc
Q 005157 225 VIFLFNTGEEEGLNGAHSFVTQHP-WSTTIRVAVDLEAMG 263 (711)
Q Consensus 225 I~flf~~~EE~gl~GS~~f~~~h~-~~~~v~a~inLD~~G 263 (711)
|.|+|+.+||.|..++..++++.. ......++|+.|..+
T Consensus 127 i~l~~~~dEE~g~~~~~~~~~~~~~~~~~~~~~iv~Ept~ 166 (438)
T PRK08554 127 VIFAFTGDEEIGGAMAMHIAEKLREEGKLPKYMINADGIG 166 (438)
T ss_pred EEEEEEcccccCccccHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 999999999998877777664332 224567889999754
No 65
>PRK13004 peptidase; Reviewed
Probab=99.07 E-value=2.4e-09 Score=119.06 Aligned_cols=122 Identities=19% Similarity=0.264 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceE-EEEeeeccCCCcccccccccCccccccccce
Q 005157 86 ELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADV-EVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (711)
Q Consensus 86 ~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v-evd~f~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (711)
.+++.+.+++|.++ |-+ |.++.++.+||.++|+++|. ++ +++ ...|
T Consensus 14 ~~~~~~~l~~lv~i-ps~--s~~e~~~a~~l~~~l~~~G~------~~~~~~------------------------~~~n 60 (399)
T PRK13004 14 KADMTRFLRDLIRI-PSE--SGDEKRVVKRIKEEMEKVGF------DKVEID------------------------PMGN 60 (399)
T ss_pred HHHHHHHHHHHhcC-CCC--CCchHHHHHHHHHHHHHcCC------cEEEEc------------------------CCCe
Confidence 36788899999986 332 34456789999999999983 21 111 2258
Q ss_pred EEEEEcCCCCCCCCCCeEEEeecCcccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 005157 165 IVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKN 223 (711)
Q Consensus 165 Vi~~i~g~~~~~~~~~~Vll~aH~DSv~~---------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~ 223 (711)
+++++.+. .+.|++.+|+|+||. ++|+.||++|++++|.+++.|.+.+..+++
T Consensus 61 ~~a~~~~~------~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~ 134 (399)
T PRK13004 61 VLGYIGHG------KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEY 134 (399)
T ss_pred EEEEECCC------CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCC
Confidence 89988542 278999999999985 268999999999999999999988777889
Q ss_pred cEEEEEeCCCCC-CCcchHHHHhc
Q 005157 224 AVIFLFNTGEEE-GLNGAHSFVTQ 246 (711)
Q Consensus 224 ~I~flf~~~EE~-gl~GS~~f~~~ 246 (711)
+|.|+|..+||. +..|++.++++
T Consensus 135 ~i~~~~~~~EE~~~g~~~~~~~~~ 158 (399)
T PRK13004 135 TLYVTGTVQEEDCDGLCWRYIIEE 158 (399)
T ss_pred eEEEEEEcccccCcchhHHHHHHh
Confidence 999999999996 45678888754
No 66
>PRK09864 putative peptidase; Provisional
Probab=99.06 E-value=1.2e-08 Score=111.61 Aligned_cols=149 Identities=20% Similarity=0.176 Sum_probs=97.9
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeecCcC------------
Q 005157 197 AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMGI------------ 264 (711)
Q Consensus 197 A~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~~G~------------ 264 (711)
|-||..||++++|++|.+++ ++.+++|+|+.-||.|+.||+.-+.+.+ . ..+|.+|..-+
T Consensus 173 alDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~i~--P--DiaIavDvt~~~d~p~~~~~~~~ 244 (356)
T PRK09864 173 ALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEHIK--P--DVVIVLDTAVAGDVPGIDNIKYP 244 (356)
T ss_pred eCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhcCC--C--CEEEEEecccCCCCCCCcccccc
Confidence 78999999999999999954 7799999999999999999998774332 2 34677775422
Q ss_pred ----CCCcc-ccccCC--CHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHHhh-cCCceEEEEeeeCCCCCCCC
Q 005157 265 ----GGRSA-LFQAGP--NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTE-VAGLSGLDFAYTDKSAVYHT 336 (711)
Q Consensus 265 ----gG~~~-lfqtg~--~~~l~~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~-~~GIPgld~a~~~~~~~YHT 336 (711)
+|+.+ .+..++ ++.+.+...+.|+. .+...-.+.... .+||-..+.. ..|+|...++. . .-+-||
T Consensus 245 ~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~-~~Ip~Q~~~~~~----ggTDa~~i~~~~~Gvpt~~isi-P-~RY~Hs 317 (356)
T PRK09864 245 LKLGQGPGLMLFDKRYFPNQKLVAALKSCAAH-NDLPLQFSTMKT----GATDGGRYNVMGGGRPVVALCL-P-TRYLHA 317 (356)
T ss_pred cccCCCCeEEEccCCccCCHHHHHHHHHHHHH-cCCCceEEEcCC----CCchHHHHHHhCCCCcEEEEee-c-cCcCCC
Confidence 22222 222233 67777776665432 111111122221 3566555533 26999988763 2 224688
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 005157 337 KNDRLDLLKPGSLQHLGENMLDFLLQT 363 (711)
Q Consensus 337 ~~Dt~d~i~~~sLq~~g~~vl~ll~~L 363 (711)
+. +-++.+.++++.+.+.+++..+
T Consensus 318 ~~---e~~~~~D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 318 NS---GMISKADYDALLTLIRDFLTTL 341 (356)
T ss_pred cc---eEeEHHHHHHHHHHHHHHHHhc
Confidence 65 5677888888888888887765
No 67
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=99.05 E-value=6e-09 Score=112.66 Aligned_cols=196 Identities=16% Similarity=0.223 Sum_probs=133.0
Q ss_pred ccceEEEEEc-CCC--CCCCCCCeEEEeecCcccCC----CCCCCCChhHHHHHHHHHHHHHhc----CCCCCCcEEEEE
Q 005157 161 DLNHIVLRIL-PKY--ASEAGENAILVSSHIDTVSA----GEGAGDCSSCVAVMLELARVMSQW----AHEFKNAVIFLF 229 (711)
Q Consensus 161 ~~~NVi~~i~-g~~--~~~~~~~~Vll~aH~DSv~~----spGA~Dd~sGva~~LE~ar~L~~~----~~~~~~~I~flf 229 (711)
.+.||.+++. |-+ .+++..|.|++.||||+.+. ++||+-||+|++++||++|.+++- ....++++.|+.
T Consensus 192 ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~l 271 (555)
T KOG2526|consen 192 KILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFIL 271 (555)
T ss_pred ccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEE
Confidence 6899999998 321 12346799999999999754 589999999999999999999872 245689999999
Q ss_pred eCCCCCCCcchHHHHhcCC--CcCCceEEEEeecCcCCCCccc-cccCC--CHHHHHH----HHHHccCCCCcccccccc
Q 005157 230 NTGEEEGLNGAHSFVTQHP--WSTTIRVAVDLEAMGIGGRSAL-FQAGP--NLWAVEN----FAAVAKYPSGQIIGQDLF 300 (711)
Q Consensus 230 ~~~EE~gl~GS~~f~~~h~--~~~~v~a~inLD~~G~gG~~~l-fqtg~--~~~l~~~----~~~~a~~p~~~~l~~~~f 300 (711)
++|--...+|++.|.+-.. .++++..+|++|++|.+..+.. ..+-| +...+.. +...+++-.-... -
T Consensus 272 t~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP~dnt~i~qffr~l~svAek~~~~v~----~ 347 (555)
T KOG2526|consen 272 TAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPPSDNTVIAQFFRRLNSVAEKKNIEVV----T 347 (555)
T ss_pred ccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCCCcchHHHHHHHHhhhhchhcceEEE----E
Confidence 9999999999999996322 3579999999999999854443 23222 3233333 3333333221100 0
Q ss_pred cCCCCCCC-----CchHHHhhcCCceEEEEeeeCCC--CCCCCCC-CCcCCCCHHHHHHHHHHHHHHHH
Q 005157 301 ASGVFETA-----TDFQVYTEVAGLSGLDFAYTDKS--AVYHTKN-DRLDLLKPGSLQHLGENMLDFLL 361 (711)
Q Consensus 301 ~~g~ips~-----TD~~~F~~~~GIPgld~a~~~~~--~~YHT~~-Dt~d~i~~~sLq~~g~~vl~ll~ 361 (711)
+...|.-. =.|..|.- ..+|+..+...... +.-.+-. |+...+|.++|-+..+.+.+.+.
T Consensus 348 khkkInla~s~lAWEHErFsi-kR~pAfTLS~l~Sprdp~rnsi~~d~rsrldedtLi~ntRlIaEAla 415 (555)
T KOG2526|consen 348 KHKKINLASSRLAWEHERFSI-KRMPAFTLSTLPSPRDPARNSILLDLRSRLDEDTLIDNTRLIAEALA 415 (555)
T ss_pred EeeeEeeccchhhhhhhhhhh-hcccceeeccCCCCcchhhccccccchhhhhhhhhhhhhhHHHHHHH
Confidence 00112211 24667765 78999999876432 2344444 99999999998866655554433
No 68
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=99.04 E-value=2.4e-09 Score=117.45 Aligned_cols=119 Identities=19% Similarity=0.245 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEEEEEc
Q 005157 91 KHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRIL 170 (711)
Q Consensus 91 ~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~ 170 (711)
+.|++|.++. ..|.++.++++||.++|+++| ++++... . .+..|++++.
T Consensus 3 ~~l~~lv~ip---s~s~~e~~~~~~i~~~l~~~G------~~~~~~~--~-------------------~~~~~~~~~~- 51 (370)
T TIGR01246 3 ELAKELISRP---SVTPNDAGCQDIIAERLEKLG------FEIEWMH--F-------------------GDTKNLWATR- 51 (370)
T ss_pred HHHHHHhcCC---CCCcchHHHHHHHHHHHHHCC------CEEEEEe--c-------------------CCCceEEEEe-
Confidence 5677888752 234455789999999999998 3444321 1 0235889875
Q ss_pred CCCCCCCCCCeEEEeecCcccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEE
Q 005157 171 PKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLF 229 (711)
Q Consensus 171 g~~~~~~~~~~Vll~aH~DSv~~---------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf 229 (711)
|. ..+.|++.+|+|+||. ++|+.|++.|+++++++++.+.+.+.+++++|.|+|
T Consensus 52 g~-----~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~ 126 (370)
T TIGR01246 52 GT-----GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLI 126 (370)
T ss_pred cC-----CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 32 3478999999999975 278899999999999999999887767788999999
Q ss_pred eCCCCCCC-cchHHHHh
Q 005157 230 NTGEEEGL-NGAHSFVT 245 (711)
Q Consensus 230 ~~~EE~gl-~GS~~f~~ 245 (711)
..+||.+. .|++.+.+
T Consensus 127 ~~dEE~~~~~G~~~~~~ 143 (370)
T TIGR01246 127 TSDEEGTAIDGTKKVVE 143 (370)
T ss_pred EeccccCCCcCHHHHHH
Confidence 99999864 69998874
No 69
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.03 E-value=2.2e-09 Score=116.38 Aligned_cols=125 Identities=22% Similarity=0.277 Sum_probs=94.0
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEEEEEcC
Q 005157 92 HVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILP 171 (711)
Q Consensus 92 ~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g 171 (711)
.+++|.++ |-+.| .++++.+||.++|++++. +++.+ ...|++++. +
T Consensus 2 ~l~~lv~i-~s~s~--~e~~~~~~l~~~l~~~g~------~~~~~------------------------~~~~~~~~~-~ 47 (336)
T TIGR01902 2 LLKDLLEI-YSPSG--KEANAAKFLEEISKDLGL------KLIID------------------------DAGNFILGK-G 47 (336)
T ss_pred hHHHHhcC-CCCCc--chHHHHHHHHHHHHHcCC------EEEEC------------------------CCCcEEEEe-C
Confidence 46778876 33333 356899999999999982 33211 124777754 2
Q ss_pred CCCCCCCCCeEEEeecCcccCC------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcc
Q 005157 172 KYASEAGENAILVSSHIDTVSA------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNG 239 (711)
Q Consensus 172 ~~~~~~~~~~Vll~aH~DSv~~------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~G 239 (711)
. +.+.|++++|+|+||. ++|+.|+++|+|+++++++.|.+. ..+|.|+++.+||.|..|
T Consensus 48 ~-----~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~~G 118 (336)
T TIGR01902 48 D-----GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSSKG 118 (336)
T ss_pred C-----CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCCcc
Confidence 1 3478999999999974 489999999999999999999764 358999999999999999
Q ss_pred hHHHHhcCCCcCCceEEEEeecCc
Q 005157 240 AHSFVTQHPWSTTIRVAVDLEAMG 263 (711)
Q Consensus 240 S~~f~~~h~~~~~v~a~inLD~~G 263 (711)
++.+++++.. .+++..|..+
T Consensus 119 ~~~~~~~~~~----~~~ii~ept~ 138 (336)
T TIGR01902 119 AREVIDKNYP----FYVIVGEPSG 138 (336)
T ss_pred HHHHHhhcCC----CEEEEecCCC
Confidence 9999966432 2667777544
No 70
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=98.99 E-value=5.3e-09 Score=115.42 Aligned_cols=134 Identities=24% Similarity=0.215 Sum_probs=96.3
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEEEEEcCC
Q 005157 93 VKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILPK 172 (711)
Q Consensus 93 L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g~ 172 (711)
|++|.+|. -+ |.++.++.+||.++|++++.+ .++++. ...||++++.+.
T Consensus 2 l~~Lv~ip-S~--s~~e~~~~~~i~~~l~~~g~~-----~~~~~~-----------------------~~~nvva~~~~~ 50 (373)
T TIGR01900 2 LQQIMDIF-SP--SDHEGPIADEIEAALNNLELE-----GLEVFR-----------------------FGDNVLARTDFG 50 (373)
T ss_pred hHHHhCCC-CC--CchHHHHHHHHHHHHhhcccc-----CceEEE-----------------------ECCEEEEecCCC
Confidence 56777763 22 344567899999999987621 122221 013899987432
Q ss_pred CCCCCCCCeEEEeecCcccCC-------------------------------CCCCCCChhHHHHHHHHHHHHHh--cCC
Q 005157 173 YASEAGENAILVSSHIDTVSA-------------------------------GEGAGDCSSCVAVMLELARVMSQ--WAH 219 (711)
Q Consensus 173 ~~~~~~~~~Vll~aH~DSv~~-------------------------------spGA~Dd~sGva~~LE~ar~L~~--~~~ 219 (711)
+.+.|++++|+|+||. ++|+.|+++|+|++|++++.|.+ .+.
T Consensus 51 -----~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~ 125 (373)
T TIGR01900 51 -----KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPET 125 (373)
T ss_pred -----CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhcccc
Confidence 2467999999999952 27899999999999999999954 344
Q ss_pred CCCCcEEEEEeCCCCCCC--cchHHHHhcCCCcCCceEEEEeecC
Q 005157 220 EFKNAVIFLFNTGEEEGL--NGAHSFVTQHPWSTTIRVAVDLEAM 262 (711)
Q Consensus 220 ~~~~~I~flf~~~EE~gl--~GS~~f~~~h~~~~~v~a~inLD~~ 262 (711)
.++.+|.|+|..+||.+. .|+..++++++...+..++|..|..
T Consensus 126 ~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~~d~~iv~Ept 170 (373)
T TIGR01900 126 ELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLAADFAIIGEPT 170 (373)
T ss_pred CCCCCEEEEEEecccccCCCCCHHHHHHhCcccccCCEEEEECCC
Confidence 678899999999999863 6999998765432345667776643
No 71
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=98.99 E-value=4.4e-09 Score=118.97 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhcCCCC----CC-----CHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccc
Q 005157 87 LEAMKHVKALTQLGPHA----VG-----SDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTL 157 (711)
Q Consensus 87 erA~~~L~~L~~igpr~----~G-----S~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~ 157 (711)
+...+.|++|.++..-. .+ .++..++.+|+.++++++| ++++.
T Consensus 2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g------~~~~~---------------------- 53 (447)
T TIGR01887 2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDG------FTTEN---------------------- 53 (447)
T ss_pred hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcC------ceEEE----------------------
Confidence 35677888888874311 11 2334689999999999987 23331
Q ss_pred cccccceEEEEEcCCCCCCCCCCeEEEeecCcccCC-------------------CCCCCCChhHHHHHHHHHHHHHhcC
Q 005157 158 IYSDLNHIVLRILPKYASEAGENAILVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQWA 218 (711)
Q Consensus 158 ~Y~~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~-------------------spGA~Dd~sGva~~LE~ar~L~~~~ 218 (711)
..|++++.+.. +..+.|++++|+|+||. ++|+.|++.|+++++++++.|.+.+
T Consensus 54 ----~~~~~~~~~~~----~~~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~ 125 (447)
T TIGR01887 54 ----VDNYAGYAEYG----QGEEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELG 125 (447)
T ss_pred ----ecCceEEEEeC----CCCCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcC
Confidence 11333322211 12367999999999974 3899999999999999999999887
Q ss_pred CCCCCcEEEEEeCCCCCCCcchHHHHhc
Q 005157 219 HEFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (711)
Q Consensus 219 ~~~~~~I~flf~~~EE~gl~GS~~f~~~ 246 (711)
.+++++|.|+|+.+||.|..|++.++++
T Consensus 126 ~~~~~~i~~~~~~dEE~g~~g~~~~l~~ 153 (447)
T TIGR01887 126 LKLKKKIRFIFGTDEETGWACIDYYFEH 153 (447)
T ss_pred CCCCCcEEEEEECCcccCcHhHHHHHHh
Confidence 7789999999999999999999999854
No 72
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=98.96 E-value=1e-08 Score=112.40 Aligned_cols=132 Identities=15% Similarity=0.205 Sum_probs=97.6
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEEEEEc
Q 005157 91 KHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRIL 170 (711)
Q Consensus 91 ~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~ 170 (711)
+.+++|.++ |.+.| .+.++.+||.++|++++. +++.+ . ....|++++++
T Consensus 3 ~~~~~L~~i-ps~s~--~E~~~a~~l~~~l~~~g~------~~~~~---~-------------------~~~~~vva~~~ 51 (363)
T TIGR01891 3 DIRRHLHEH-PELSF--EEFKTSSLIAEALESLGI------EVRRG---V-------------------GGATGVVATIG 51 (363)
T ss_pred HHHHHHhcC-CCCCC--chHHHHHHHHHHHHHcCC------ceEec---C-------------------CCCcEEEEEEe
Confidence 567888887 55544 446899999999999983 33321 0 02378999986
Q ss_pred CCCCCCCCCCeEEEeecCcccCCC-----------------CCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCC
Q 005157 171 PKYASEAGENAILVSSHIDTVSAG-----------------EGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGE 233 (711)
Q Consensus 171 g~~~~~~~~~~Vll~aH~DSv~~s-----------------pGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~E 233 (711)
++ .+.+.|++++|+|+||.. +|+ .+++|+++.+++.|++.+.+++++|.|+|+.+|
T Consensus 52 ~~----~~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dE 124 (363)
T TIGR01891 52 GG----KPGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGH---DLHTAILLGTAKLLKKLADLLEGTVRLIFQPAE 124 (363)
T ss_pred CC----CCCCEEEEEeccCCCCcccccCCCcccCCCCceecCcC---HHHHHHHHHHHHHHHhchhhCCceEEEEEeecC
Confidence 53 234789999999999842 233 367899999999998866667889999999999
Q ss_pred CCCCcchHHHHhcCCCcCCceEEEEeecC
Q 005157 234 EEGLNGAHSFVTQHPWSTTIRVAVDLEAM 262 (711)
Q Consensus 234 E~gl~GS~~f~~~h~~~~~v~a~inLD~~ 262 (711)
|.+ .|++.++++. +.+++..+++.|..
T Consensus 125 E~~-~G~~~~~~~~-~~~~~d~~i~~e~~ 151 (363)
T TIGR01891 125 EGG-GGATKMIEDG-VLDDVDAILGLHPD 151 (363)
T ss_pred cCc-chHHHHHHCC-CCCCcCEEEEECCC
Confidence 986 7999998553 33456677887754
No 73
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=98.91 E-value=1.8e-08 Score=111.89 Aligned_cols=122 Identities=19% Similarity=0.269 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEE
Q 005157 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIV 166 (711)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi 166 (711)
+++.+.+++|.++ |-+. ..+.++.+||.++++++|.+ .++.+ ...|++
T Consensus 13 ~~~~~~~~~lv~i-~s~s--~~e~~~~~~l~~~l~~~G~~-----~~~~~------------------------~~~n~~ 60 (395)
T TIGR03320 13 GDMIRFLRDLVAI-PSES--GDEKRVAERIKEEMEKLGFD-----KVEID------------------------PMGNVL 60 (395)
T ss_pred HHHHHHHHHHHcC-CCCC--CchHHHHHHHHHHHHHhCCc-----EEEEC------------------------CCCCEE
Confidence 6788889999986 3333 33468899999999999831 11111 125788
Q ss_pred EEEcCCCCCCCCCCeEEEeecCcccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcE
Q 005157 167 LRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAV 225 (711)
Q Consensus 167 ~~i~g~~~~~~~~~~Vll~aH~DSv~~---------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I 225 (711)
+++ |. +.+.|++.+|+|+||. ++|+.|++.|+|++|.+++.|.+.+..++.++
T Consensus 61 ~~~-g~-----~~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i 134 (395)
T TIGR03320 61 GYI-GH-----GPKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTL 134 (395)
T ss_pred EEe-CC-----CCcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceE
Confidence 887 32 2367999999999974 38999999999999999999998776678899
Q ss_pred EEEEeCCCCCC-CcchHHHHhc
Q 005157 226 IFLFNTGEEEG-LNGAHSFVTQ 246 (711)
Q Consensus 226 ~flf~~~EE~g-l~GS~~f~~~ 246 (711)
.|.+..+||.+ ..|++.++.+
T Consensus 135 ~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03320 135 LVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred EEEecccccccCchHHHHHHHh
Confidence 99999999964 2344555543
No 74
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=98.89 E-value=2.5e-08 Score=110.69 Aligned_cols=121 Identities=19% Similarity=0.263 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceE-EEEeeeccCCCcccccccccCccccccccceE
Q 005157 87 LEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADV-EVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (711)
Q Consensus 87 erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~v-evd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (711)
+++.+.+++|.++ |-+. ..+.++.+||.+++++++. +. +.+ ...|+
T Consensus 13 ~~~~~~l~~Lv~i-ps~s--~~e~~~~~~l~~~l~~~g~------~~~~~~------------------------~~~~v 59 (395)
T TIGR03526 13 GDMIRFLRDLVAI-PSES--GDEGRVALRIKQEMEKLGF------DKVEID------------------------PMGNV 59 (395)
T ss_pred HHHHHHHHHHhcC-CCCC--CchHHHHHHHHHHHHHcCC------ceEEEc------------------------CCCcE
Confidence 5778889999986 3333 3345789999999999872 21 211 12588
Q ss_pred EEEEcCCCCCCCCCCeEEEeecCcccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCc
Q 005157 166 VLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNA 224 (711)
Q Consensus 166 i~~i~g~~~~~~~~~~Vll~aH~DSv~~---------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~ 224 (711)
++++ |. ..+.|++.+|+|+||. ++|+.|++.|++++|.+++.|.+.+..++.+
T Consensus 60 ~~~~-g~-----~~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~ 133 (395)
T TIGR03526 60 LGYI-GH-----GPKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYT 133 (395)
T ss_pred EEEe-CC-----CCCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCce
Confidence 8887 32 2367999999999984 3899999999999999999999877667789
Q ss_pred EEEEEeCCCCC-CCcchHHHHhc
Q 005157 225 VIFLFNTGEEE-GLNGAHSFVTQ 246 (711)
Q Consensus 225 I~flf~~~EE~-gl~GS~~f~~~ 246 (711)
+.|++..+||. +..|++.++++
T Consensus 134 v~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03526 134 LLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred EEEEEecccccCCcHhHHHHHhc
Confidence 99999999994 44567776643
No 75
>PRK08737 acetylornithine deacetylase; Provisional
Probab=98.89 E-value=1.7e-08 Score=111.20 Aligned_cols=119 Identities=22% Similarity=0.253 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccce
Q 005157 86 ELEAMKHVKALTQLGPHA-VGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNH 164 (711)
Q Consensus 86 ~erA~~~L~~L~~igpr~-~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~N 164 (711)
.+++.+.|++|.+|.... .++.++.++.+|+.++++ + ++++++. . + .+..|
T Consensus 5 ~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g------~~~~~~~--~--~----------------~~~~n 56 (364)
T PRK08737 5 LESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--G------FQVEVID--H--G----------------AGAVS 56 (364)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--C------CEEEEec--C--C----------------CCceE
Confidence 457889999999985432 222234688999999996 3 3444331 1 0 13468
Q ss_pred EEEEEcCCCCCCCCCCeEEEeecCcccCC-------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCcE
Q 005157 165 IVLRILPKYASEAGENAILVSSHIDTVSA-------------------GEGAGDCSSCVAVMLELARVMSQWAHEFKNAV 225 (711)
Q Consensus 165 Vi~~i~g~~~~~~~~~~Vll~aH~DSv~~-------------------spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I 225 (711)
++++ .|+ +.|++++|+||||. ++|+.|+|+|+|+|+.+++. ++.+|
T Consensus 57 li~~-~g~-------~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v 121 (364)
T PRK08737 57 LYAV-RGT-------PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDGDA 121 (364)
T ss_pred EEEE-cCC-------CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCCCE
Confidence 8885 221 46999999999984 27999999999999999873 35689
Q ss_pred EEEEeCCCCCCC-cchHHHHhcC
Q 005157 226 IFLFNTGEEEGL-NGAHSFVTQH 247 (711)
Q Consensus 226 ~flf~~~EE~gl-~GS~~f~~~h 247 (711)
.|+|+.+||.|. .|++.++++.
T Consensus 122 ~~~~~~dEE~g~~~g~~~~~~~~ 144 (364)
T PRK08737 122 AFLFSSDEEANDPRCVAAFLARG 144 (364)
T ss_pred EEEEEcccccCchhhHHHHHHhC
Confidence 999999999987 6989998654
No 76
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=98.75 E-value=6.6e-08 Score=101.11 Aligned_cols=171 Identities=18% Similarity=0.262 Sum_probs=127.9
Q ss_pred CCCeEEEeecCcccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcchHHHHhcCCC-cCCceEE
Q 005157 178 GENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-STTIRVA 256 (711)
Q Consensus 178 ~~~~Vll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~GS~~f~~~h~~-~~~v~a~ 256 (711)
++..|++++|..+.. -|+||-||+|.+.-+++.|+.. +.+.+-+|+|-. +..||-.|..+|.. .++++..
T Consensus 177 ~~~eiLlst~lCHPS---maNdn~SG~all~~lak~l~~~--ktrysYRfvf~P----~TiGsi~wLsrnee~lkhvk~G 247 (435)
T COG4310 177 SKDEILLSTYLCHPS---MANDNLSGLALLTFLAKALKSL--KTRYSYRFVFAP----ETIGSIVWLSRNEECLKHVKHG 247 (435)
T ss_pred ccceeeeeecccChh---hccCccchHHHHHHHHHHHHhc--cceeeEEEEecc----cccchhhhHhcchhHHhhhhcc
Confidence 567799999999975 6999999999999999999875 467788888875 46899999988864 5799999
Q ss_pred EEeecCcCCCCccccccCCCHHHHHHHHH-HccCCCCcccccccccCCCCCCCCchHHHhhcCCceEEEEe-------ee
Q 005157 257 VDLEAMGIGGRSALFQAGPNLWAVENFAA-VAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFA-------YT 328 (711)
Q Consensus 257 inLD~~G~gG~~~lfqtg~~~~l~~~~~~-~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~~GIPgld~a-------~~ 328 (711)
+.+.+.|.+|....-++-....+++..+. .-.|-....-. ...+|-++|-|+|.. ||+++. -+
T Consensus 248 lVlsClGD~g~~nykrtrrgna~iDki~~~tl~~~~s~~~~-----~dF~p~G~DERQf~s----Pg~NLpvg~~~Rs~y 318 (435)
T COG4310 248 LVLSCLGDGGGPNYKRTRRGNALIDKIALHTLKHCGSNFKA-----ADFLPYGSDERQFCS----PGFNLPVGGLQRSRY 318 (435)
T ss_pred eEEEEecCCCCccceeccccchHHHHHHHHHHhcCCcCcee-----eecccCCCchhhccC----CCcCCchhhhhHhhc
Confidence 99999999886666554333334444433 22332211111 225678899999987 555443 23
Q ss_pred CCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 005157 329 DKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 366 (711)
Q Consensus 329 ~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~~La~~ 366 (711)
+.-+.|||+.|+++.|+++.|...-+.++.++..+-+.
T Consensus 319 G~f~~YHtSaDnL~fi~~e~L~~s~~~~memI~~lE~N 356 (435)
T COG4310 319 GDFDGYHTSADNLDFISPEGLAGSFQMMMEMILNLEIN 356 (435)
T ss_pred CCCccccCccccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 34457999999999999999999888899988877653
No 77
>PLN02693 IAA-amino acid hydrolase
Probab=98.73 E-value=1.9e-07 Score=105.43 Aligned_cols=120 Identities=16% Similarity=0.249 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEEEE
Q 005157 89 AMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLR 168 (711)
Q Consensus 89 A~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~ 168 (711)
+.+..++|-+ +|.-|-++.++.+||.++|+++| ++++.. . ...|++++
T Consensus 49 ~~~~r~~lh~---~PE~s~~E~~ta~~i~~~L~~~G------~~~~~~---~--------------------~~~~via~ 96 (437)
T PLN02693 49 MVRIRRKIHE---NPELGYEEFETSKLIRSELDLIG------IKYRYP---V--------------------AITGIIGY 96 (437)
T ss_pred HHHHHHHHHh---CCCCCCchHHHHHHHHHHHHHCC------CeeEec---C--------------------CCcEEEEE
Confidence 4444445554 44556666789999999999998 333321 0 23799998
Q ss_pred EcCCCCCCCCCCeEEEeecCcccCCC-----------CC---CCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q 005157 169 ILPKYASEAGENAILVSSHIDTVSAG-----------EG---AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEE 234 (711)
Q Consensus 169 i~g~~~~~~~~~~Vll~aH~DSv~~s-----------pG---A~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE 234 (711)
+.++ +.+.|++.+|+|+||.. +| +.|.++++|+++.+++.|++.+.+++.+|.|+|..+||
T Consensus 97 ~g~~-----~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE 171 (437)
T PLN02693 97 IGTG-----EPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEE 171 (437)
T ss_pred ECCC-----CCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEccc
Confidence 8321 34789999999999852 12 77889999999999999988665677899999999999
Q ss_pred CCCcchHHHHhc
Q 005157 235 EGLNGAHSFVTQ 246 (711)
Q Consensus 235 ~gl~GS~~f~~~ 246 (711)
+..|++.++++
T Consensus 172 -~~~Ga~~~i~~ 182 (437)
T PLN02693 172 -GLSGAKKMREE 182 (437)
T ss_pred -chhhHHHHHHC
Confidence 55799999854
No 78
>PLN02280 IAA-amino acid hydrolase
Probab=98.68 E-value=4.1e-07 Score=103.79 Aligned_cols=125 Identities=20% Similarity=0.288 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceE
Q 005157 87 LEAMKHVKALTQ-LGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHI 165 (711)
Q Consensus 87 erA~~~L~~L~~-igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NV 165 (711)
+...+.|++|.+ +-.+|.-+.++.++.+||.++|+++| ++++.. ....|+
T Consensus 93 ~~~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G------~~~~~~-----------------------~~~~~v 143 (478)
T PLN02280 93 PDTVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMG------IMYRYP-----------------------LAKTGI 143 (478)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCC------CeEEec-----------------------CCCCEE
Confidence 334455555554 21233345566789999999999988 333321 023699
Q ss_pred EEEEcCCCCCCCCCCeEEEeecCcccCCCC-----------C---CCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeC
Q 005157 166 VLRILPKYASEAGENAILVSSHIDTVSAGE-----------G---AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNT 231 (711)
Q Consensus 166 i~~i~g~~~~~~~~~~Vll~aH~DSv~~sp-----------G---A~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~ 231 (711)
++++ |+ .+++.|++.+|+|+||... | +.|...++|+++.+++.|.+.+.+++.+|.|+|..
T Consensus 144 va~~-g~----~~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~~~~~~g~V~~if~p 218 (478)
T PLN02280 144 RAWI-GT----GGPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVAMLLGAAKILKSREHLLKGTVVLLFQP 218 (478)
T ss_pred EEEE-CC----CCCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhccccCCceEEEEecc
Confidence 9998 43 1237899999999998521 1 33455699999999999987666778899999999
Q ss_pred CCCCCCcchHHHHhc
Q 005157 232 GEEEGLNGAHSFVTQ 246 (711)
Q Consensus 232 ~EE~gl~GS~~f~~~ 246 (711)
+||.| .|++.++++
T Consensus 219 dEE~g-~Ga~~li~~ 232 (478)
T PLN02280 219 AEEAG-NGAKRMIGD 232 (478)
T ss_pred ccccc-chHHHHHHC
Confidence 99997 499999854
No 79
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=98.64 E-value=1.5e-07 Score=102.69 Aligned_cols=158 Identities=18% Similarity=0.219 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhhcc-ccCCcceEEEEeeeccCCCcccccccccCccccccc
Q 005157 83 GFSELEAMKHVKALTQLGPHAVGSDALDRALQYVLAASQKIKE-SKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSD 161 (711)
Q Consensus 83 ~fs~erA~~~L~~L~~igpr~~GS~~~~~a~~yL~~~l~~ig~-~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~ 161 (711)
..+.||+++....|++. |-..|++++..-.++|+..|.++-. +.|++ |.+.+. +. ...| .
T Consensus 4 ~is~e~v~~lt~~LV~~-~SvtgT~GE~a~ad~l~~vL~~~pYFqehpe-----d~~~~p-----i~-------nDpy-g 64 (553)
T COG4187 4 RISSERVRALTLSLVSW-PSVTGTPGEGAFADRLLGVLGELPYFQEHPE-----DLWLQP-----IH-------NDPY-G 64 (553)
T ss_pred hhhHHHHHHHHHHHeec-cccCCCcccccHHHHHHHHHhcCchhhhChH-----hhcccC-----CC-------CCcc-c
Confidence 45689999999999985 7788999988889999999988742 22221 111111 00 1123 4
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecCcccCC------------------------------------------CCCCCC
Q 005157 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSA------------------------------------------GEGAGD 199 (711)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~------------------------------------------spGA~D 199 (711)
..||.+-++|+ ++++.|++.+|+|+|.. ++|+.|
T Consensus 65 R~nv~AlVrg~----~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~D 140 (553)
T COG4187 65 RRNVFALVRGG----TSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALD 140 (553)
T ss_pred cceeEEEEecC----CCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchh
Confidence 58999999984 57789999999999974 389999
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcchHHHHhcCCC-----cCCceEEEEeecCcC
Q 005157 200 CSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-----STTIRVAVDLEAMGI 264 (711)
Q Consensus 200 d~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~GS~~f~~~h~~-----~~~v~a~inLD~~G~ 264 (711)
+++|.|+-|..++.+.+. ...+.++.|+.+.+||....|.+.-+...+. .-...++||+|.++.
T Consensus 141 MKsGlav~la~L~~fa~~-~~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~ 209 (553)
T COG4187 141 MKSGLAVHLACLEEFAAR-TDRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSD 209 (553)
T ss_pred hhhhhHHHHHHHHHHhhC-CCCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccC
Confidence 999999999999999986 5778999999999999988888877654331 236789999998865
No 80
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=98.23 E-value=2.2e-06 Score=91.84 Aligned_cols=140 Identities=21% Similarity=0.269 Sum_probs=86.4
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEeecCc------CC-----
Q 005157 197 AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLEAMG------IG----- 265 (711)
Q Consensus 197 A~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD~~G------~g----- 265 (711)
+-||.+||++++|++|.+++. +.+.+++|+|+..||.|+.|++..+.+. +...+|.+|..- ..
T Consensus 132 alDdR~g~~~lle~l~~l~~~--~~~~~v~~v~tvqEEvG~rGA~~aa~~i----~PD~ai~vD~~~a~d~~~~~~~~~~ 205 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEK--ELDVDVYFVFTVQEEVGLRGAKTAAFRI----KPDIAIAVDVTPAGDTPGSDEKEQG 205 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTS--S-SSEEEEEEESSCTTTSHHHHHHHHHH-----CSEEEEEEEEEESSSTTSTTTTSC
T ss_pred eCCchhHHHHHHHHHHHHhhc--CCCceEEEEEEeeeeecCcceeeccccc----CCCEEEEEeeeccCCCCCCchhhcc
Confidence 679999999999999999874 4569999999999999999999887542 223455555432 21
Q ss_pred ---CCccc-cccC--CCHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHHhh-cCCceEEEEeeeCCCCCCCCCC
Q 005157 266 ---GRSAL-FQAG--PNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTE-VAGLSGLDFAYTDKSAVYHTKN 338 (711)
Q Consensus 266 ---G~~~l-fqtg--~~~~l~~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~-~~GIPgld~a~~~~~~~YHT~~ 338 (711)
|+.+. +..+ +++.+.+...+.++. .+...-.+.+. ...||-..+.. ..|+|...++.- -.+.||+.
T Consensus 206 lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~-~~Ip~Q~~~~~----~ggTDa~~~~~~~~Gi~t~~i~iP--~ry~Hs~~ 278 (292)
T PF05343_consen 206 LGKGPVIRVGDSSMIPNPKLVDKLREIAEE-NGIPYQREVFS----GGGTDAGAIQLSGGGIPTAVISIP--CRYMHSPV 278 (292)
T ss_dssp TTS-EEEEEEETTEESHHHHHHHHHHHHHH-TT--EEEEEES----SSSSTHHHHHTSTTSSEEEEEEEE--EBSTTSTT
T ss_pred CCCCcEEEEccCCCCCCHHHHHHHHHHHHH-cCCCeEEEecC----CcccHHHHHHHcCCCCCEEEEecc--cccCCCcc
Confidence 11121 1111 256677666665432 12111122332 34788888765 259999888642 23578876
Q ss_pred CCcCCCCHHHHHHH
Q 005157 339 DRLDLLKPGSLQHL 352 (711)
Q Consensus 339 Dt~d~i~~~sLq~~ 352 (711)
-+ ++.+.++++
T Consensus 279 e~---~~~~Di~~~ 289 (292)
T PF05343_consen 279 EV---IDLDDIEAT 289 (292)
T ss_dssp EE---EEHHHHHHH
T ss_pred eE---EEHHHHHHH
Confidence 54 444444443
No 81
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=98.15 E-value=1.6e-05 Score=86.38 Aligned_cols=142 Identities=18% Similarity=0.286 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccc
Q 005157 85 SELEAMKHVKALTQLGPH---AVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSD 161 (711)
Q Consensus 85 s~erA~~~L~~L~~igpr---~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~ 161 (711)
..++..+.|++..+|..- +.-..+-.+..+|+.++++++|. .++. ++.... +..+| . +..
T Consensus 14 ~~de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~------~~~l--~dlg~q-~~~~g-----~---~v~ 76 (473)
T KOG2276|consen 14 NKDEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGA------PLEL--VDLGYQ-SLPDG-----Q---IVP 76 (473)
T ss_pred cHHHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCC------ceee--eecccC-CCCCC-----c---ccc
Confidence 568888899999887541 12223345899999999999993 2222 111000 00011 0 111
Q ss_pred cceEEEEEcCCCCCCCCCCeEEEeecCcccCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCC
Q 005157 162 LNHIVLRILPKYASEAGENAILVSSHIDTVSA---------------------GEGAGDCSSCVAVMLELARVMSQWAHE 220 (711)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~---------------------spGA~Dd~sGva~~LE~ar~L~~~~~~ 220 (711)
..-++--..|+ .++++.+++..|||..|. ++|++||+.-|+.-.++++++.+.+..
T Consensus 77 lPpvvl~~~Gs---dp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~ 153 (473)
T KOG2276|consen 77 LPPVVLGVLGS---DPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGID 153 (473)
T ss_pred cChhhhhcccC---CCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCcc
Confidence 12222222243 367899999999999885 499999999999999999999999999
Q ss_pred CCCcEEEEEeCCCCCCCcchHHHHhc
Q 005157 221 FKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (711)
Q Consensus 221 ~~~~I~flf~~~EE~gl~GS~~f~~~ 246 (711)
++.+|+|+|-+-||.|..|-...+++
T Consensus 154 lpvnv~f~~EgmEEsgS~~L~~l~~~ 179 (473)
T KOG2276|consen 154 LPVNVVFVFEGMEESGSEGLDELIEK 179 (473)
T ss_pred ccceEEEEEEechhccCccHHHHHHH
Confidence 99999999999999998888776653
No 82
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00032 Score=78.34 Aligned_cols=189 Identities=14% Similarity=0.165 Sum_probs=124.7
Q ss_pred ccceEEEEEcCCCCC---CCCCCeEEEeecCcccC----CCCCCCCChhHHHHHHHHHHHHHhcC--CCCCCcEEEEEeC
Q 005157 161 DLNHIVLRILPKYAS---EAGENAILVSSHIDTVS----AGEGAGDCSSCVAVMLELARVMSQWA--HEFKNAVIFLFNT 231 (711)
Q Consensus 161 ~~~NVi~~i~g~~~~---~~~~~~Vll~aH~DSv~----~spGA~Dd~sGva~~LE~ar~L~~~~--~~~~~~I~flf~~ 231 (711)
+.+||..-++|-... +.-.+.++..+-+|+-. .++||..--++....|.++|.|++.+ ...++++.|+|+.
T Consensus 156 ~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~f~ 235 (596)
T KOG2657|consen 156 HSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAFFN 235 (596)
T ss_pred CCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCcccccccceeEEEEee
Confidence 457777766553211 12268899999999953 46888888999999999999998743 4678999999999
Q ss_pred CCCCCCcchHHHHhcCC-----Cc-CC---ceEEEEeecCcCC--CCccccccCC----C-HHH---HHHHHHHc-cCCC
Q 005157 232 GEEEGLNGAHSFVTQHP-----WS-TT---IRVAVDLEAMGIG--GRSALFQAGP----N-LWA---VENFAAVA-KYPS 291 (711)
Q Consensus 232 ~EE~gl~GS~~f~~~h~-----~~-~~---v~a~inLD~~G~g--G~~~lfqtg~----~-~~l---~~~~~~~a-~~p~ 291 (711)
+|-.+.+||.+++-+.. .+ ++ +..++.+-.+|-+ ++-.++..+. . ... ++.+++.. .+++
T Consensus 236 get~~ylgS~r~~yeme~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlrs~~f 315 (596)
T KOG2657|consen 236 GETLDYLGSGRAAYEMENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLRSHAF 315 (596)
T ss_pred cceeeeccchhhhhHhhcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhcccccCe
Confidence 99999999998875431 11 23 7777777777753 2222333211 1 122 23333321 1222
Q ss_pred CcccccccccCCCCCCCCchHHHhhcCCceEEEEeeeCC---CCCCCCCCCCcCCCCHHHHHH
Q 005157 292 GQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDK---SAVYHTKNDRLDLLKPGSLQH 351 (711)
Q Consensus 292 ~~~l~~~~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~---~~~YHT~~Dt~d~i~~~sLq~ 351 (711)
. .+.++- ++..+|..+=++..+...++.++-++-.+. ..+||+.+|+.|+++...-..
T Consensus 316 ~-ll~~s~-~s~~lPPsSlqsFlR~dpn~saVvLad~~~~f~NKyYhSilDdaeNin~sy~~a 376 (596)
T KOG2657|consen 316 D-LLKPSG-SSDRLPPSSLQSFLRADPNVSAVVLADYGKEFENKYYHSILDDAENINDSYEKA 376 (596)
T ss_pred e-eecCCC-CCCCCChHHHHHHHhhCCCcceEEeccCCchhhhhhhhhhhcchhhccchhhhh
Confidence 2 112222 233577777777777558999999986653 347999999999999876644
No 83
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0024 Score=71.61 Aligned_cols=61 Identities=18% Similarity=0.105 Sum_probs=48.7
Q ss_pred CCCChhHHHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCCCCcchHHHHhcCCCcCCceEEEEee
Q 005157 197 AGDCSSCVAVMLELARVMSQWA-HEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAVDLE 260 (711)
Q Consensus 197 A~Dd~sGva~~LE~ar~L~~~~-~~~~~~I~flf~~~EE~gl~GS~~f~~~h~~~~~v~a~inLD 260 (711)
..||++|.+.++++++.+.+.. .-+..+|.+.|+++||.|+.|++.+.-. .-.+...-++|
T Consensus 142 gaD~kAGia~i~~al~~~~~~~~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a---~f~a~~ay~iD 203 (414)
T COG2195 142 GADDKAGIAEIMTALSVLREKHPEIPHGGIRGGFSPDEEIGGRGAANKDVA---RFLADFAYTLD 203 (414)
T ss_pred CCcchhHHHHHHHHHHHHhhcCccccccCeEEEecchHHhhhhhhhhccHH---hhhcceeEecC
Confidence 3588999999999999999643 4577899999999999999999988632 22345666667
No 84
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=96.40 E-value=0.16 Score=58.67 Aligned_cols=185 Identities=17% Similarity=0.202 Sum_probs=113.0
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecCcccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcch
Q 005157 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGA 240 (711)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~GS 240 (711)
++.|+++.++... .++.+.+++.+-+++.. | .-|..|++.+|.++|.+++.. --.++|+|++.++| ..|.
T Consensus 2 ~G~nvy~i~rapR--~d~tEaivl~~~~~~~~---~-~~n~~~v~l~lal~~~~~~~~-~wsKDii~l~~~~~---~~g~ 71 (504)
T PF04114_consen 2 SGTNVYGILRAPR--GDGTEAIVLVVPWRDSD---G-EYNAGGVALALALARYFRRQS-YWSKDIIFLFTDDE---LAGM 71 (504)
T ss_pred CceEEEEEEecCC--CCCceeEEEEEecCCCC---c-ccchhhHHHHHHHHHHhhhch-hhhccEEEEecCCc---chHH
Confidence 4689999887543 35678999999988654 3 445899999999999999864 34799999999865 4688
Q ss_pred HHHHhcCC--------------CcCCceEEEEeecCcCCCCccc-cccC-----CCHHHHHHHHHHccCC---CCccc--
Q 005157 241 HSFVTQHP--------------WSTTIRVAVDLEAMGIGGRSAL-FQAG-----PNLWAVENFAAVAKYP---SGQII-- 295 (711)
Q Consensus 241 ~~f~~~h~--------------~~~~v~a~inLD~~G~gG~~~l-fqtg-----~~~~l~~~~~~~a~~p---~~~~l-- 295 (711)
++|++++- .+..+++.+|+|-.+......- .-.| ||--+++...+.+.+. .+...
T Consensus 72 ~awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~~~~v~i~~eG~NGqLPNLDL~N~~~~i~~~~gi~~~~~~~~ 151 (504)
T PF04114_consen 72 QAWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDSFSSVEIKYEGLNGQLPNLDLVNTVVRIAEKEGIPMGVSLHL 151 (504)
T ss_pred HHHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCCccEEEEEEecCCCCCCCchHHHHHHHHHHhcCCCccccccc
Confidence 89987531 1236889999998876544321 1123 2333444433322111 10000
Q ss_pred ------ccc------------cccCCCCCCCCchHHHhhcCCceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHH
Q 005157 296 ------GQD------------LFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENML 357 (711)
Q Consensus 296 ------~~~------------~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl 357 (711)
..+ ..+.+.-....+|..|.+ -+|.++.+.-.+. ..+ . .....+.|+.+-
T Consensus 152 ~~~~~~~~~~~~~~l~~l~~~~~~~a~g~p~g~H~~f~~-y~I~aiTl~~~~~------~~~--~---~~~~~~~gr~~E 219 (504)
T PF04114_consen 152 QPSDWHSNSDYESRLKTLLRGMLNQALGGPTGPHGAFLR-YRIDAITLRGVKS------TGP--G---PHDFTAFGRILE 219 (504)
T ss_pred cccccccccchHHHHHHHHHHHHHhccCCCCCCchhhhh-cCccEEEEecccC------CCC--C---CcCHHHHHHHHH
Confidence 000 011111123567889998 6899998832111 111 1 122456778888
Q ss_pred HHHHHHhcCC
Q 005157 358 DFLLQTASST 367 (711)
Q Consensus 358 ~ll~~La~~~ 367 (711)
..+|.+-|-.
T Consensus 220 ~~~RslNNLl 229 (504)
T PF04114_consen 220 GIFRSLNNLL 229 (504)
T ss_pred HHHHHHHHHH
Confidence 8888877643
No 85
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=96.38 E-value=0.085 Score=59.09 Aligned_cols=134 Identities=16% Similarity=0.233 Sum_probs=92.2
Q ss_pred HHHHHh-cCCCCCCCHHHHHHHHHHHHHHHhhccccCCcceEEEEeeeccCCCcccccccccCccccccccceEEEEEcC
Q 005157 93 VKALTQ-LGPHAVGSDALDRALQYVLAASQKIKESKHWEADVEVDFFHAKSGANRVGTGVFKGKTLIYSDLNHIVLRILP 171 (711)
Q Consensus 93 L~~L~~-igpr~~GS~~~~~a~~yL~~~l~~ig~~~~~~~~vevd~f~~~~g~~~~~g~~~~~~~~~Y~~~~NVi~~i~g 171 (711)
+.++.+ +--+|.-+-++.++.+|+.+.|++.+. ++ ++ . . + ..+-+++.+++
T Consensus 14 l~~~rr~lH~~PEL~f~E~~Ta~~i~~~L~~~g~------~~-~~---~-~------~-----------~~TGvva~~~~ 65 (392)
T COG1473 14 LIEWRRDLHEHPELGFEEYRTAAYIAEKLEELGF------EV-VE---V-G------G-----------GKTGVVATLKG 65 (392)
T ss_pred HHHHHHHHhhCCccchhHHHHHHHHHHHHHHcCC------ee-Ee---c-c------C-----------CceEEEEEEcC
Confidence 334433 334566677778999999999999982 21 11 0 0 0 13568899986
Q ss_pred CCCCCCCCCeEEEeecCcccCC-----------CCC---CCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCC
Q 005157 172 KYASEAGENAILVSSHIDTVSA-----------GEG---AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGL 237 (711)
Q Consensus 172 ~~~~~~~~~~Vll~aH~DSv~~-----------spG---A~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl 237 (711)
+ .+.+.|.+-|-||-.|. .+| |.-=-.-.+++|-+++.|++....++.+|+|+|-.+||.+-
T Consensus 66 g----~~g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~ 141 (392)
T COG1473 66 G----KPGPTIALRADMDALPIQEETGLPFASKNPGVMHACGHDGHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGG 141 (392)
T ss_pred C----CCCCEEEEEeecccCccccccCCCcccCCCCCcccCCchHHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccc
Confidence 5 24459999999999884 244 11111337889999999998766899999999999999887
Q ss_pred cchHHHHhcCCCcCC-ceEEEEee
Q 005157 238 NGAHSFVTQHPWSTT-IRVAVDLE 260 (711)
Q Consensus 238 ~GS~~f~~~h~~~~~-v~a~inLD 260 (711)
|++.++++-. .++ +.+++-+-
T Consensus 142 -Ga~~mi~~G~-~~~~vD~v~g~H 163 (392)
T COG1473 142 -GAKAMIEDGV-FDDFVDAVFGLH 163 (392)
T ss_pred -cHHHHHhcCC-ccccccEEEEec
Confidence 8999985432 233 55555544
No 86
>PRK02256 putative aminopeptidase 1; Provisional
Probab=92.17 E-value=1.2 Score=51.04 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=38.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcchHHHH
Q 005157 195 EGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFV 244 (711)
Q Consensus 195 pGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~GS~~f~ 244 (711)
.++-||..||.+++|+++.+. .++..+++++++-||.|+.|++.-.
T Consensus 256 s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs~ga~gA~ 301 (462)
T PRK02256 256 AYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGSEGNTGAQ 301 (462)
T ss_pred ccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCCcchhhhc
Confidence 578999999999999998653 3567899999999999987776554
No 87
>PRK02813 putative aminopeptidase 2; Provisional
Probab=91.61 E-value=0.65 Score=52.73 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=83.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCc---chHH-----------HHhcCC-----CcCCceE
Q 005157 195 EGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLN---GAHS-----------FVTQHP-----WSTTIRV 255 (711)
Q Consensus 195 pGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~---GS~~-----------f~~~h~-----~~~~v~a 255 (711)
.++-||-.||.+++|+++.+.. +..+++++++-||.|.. ||+. -..... ..-.-..
T Consensus 230 s~~lDnr~~~~~~l~al~~~~~-----~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i~~s~ 304 (428)
T PRK02813 230 SGRLDNLSSCHAGLEALLAAAS-----DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRALARSF 304 (428)
T ss_pred EecchhHHHHHHHHHHHHhcCC-----CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhhCCCe
Confidence 4688999999999999987532 67999999999999998 7774 110000 1123356
Q ss_pred EEEeecCcCC------------------CCccccc--cC--CCHHHHHHHHHHc---cCCCCcccccccccCCCCCCCCc
Q 005157 256 AVDLEAMGIG------------------GRSALFQ--AG--PNLWAVENFAAVA---KYPSGQIIGQDLFASGVFETATD 310 (711)
Q Consensus 256 ~inLD~~G~g------------------G~~~lfq--tg--~~~~l~~~~~~~a---~~p~~~~l~~~~f~~g~ips~TD 310 (711)
+|.+|+.-+. |+.+-+. .. +++.....+.+.+ .-|. |.....+-.|++||
T Consensus 305 ~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~-----Q~~v~~~d~~gGst 379 (428)
T PRK02813 305 LISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPY-----QEFVNRSDMPCGST 379 (428)
T ss_pred EEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCE-----EEEEecCCCCCccH
Confidence 7777765332 1111111 01 2444444443332 2221 22222234567888
Q ss_pred hHHHhh-cCCceEEEEeeeCCCCCCCCCCCCcCCCCHH
Q 005157 311 FQVYTE-VAGLSGLDFAYTDKSAVYHTKNDRLDLLKPG 347 (711)
Q Consensus 311 ~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~ 347 (711)
-.++.. ..|+|.+|+.- +.-.-||+..+...-|.+
T Consensus 380 ig~i~~s~~Gi~tvdiGi--P~l~MHS~~E~~~~~D~~ 415 (428)
T PRK02813 380 IGPITAARLGIRTVDVGA--PMLAMHSARELAGVKDHA 415 (428)
T ss_pred HHHHHHhCCCCcEEEeCh--hhcccccHHHHccHHHHH
Confidence 888765 47999999853 222469987765554444
No 88
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=91.21 E-value=1.6 Score=50.10 Aligned_cols=160 Identities=12% Similarity=0.048 Sum_probs=89.8
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcC-CCCCCcEEEEEeCCCCCCCcchHHHHhcC-CC-------cCCce-----------
Q 005157 195 EGAGDCSSCVAVMLELARVMSQWA-HEFKNAVIFLFNTGEEEGLNGAHSFVTQH-PW-------STTIR----------- 254 (711)
Q Consensus 195 pGA~Dd~sGva~~LE~ar~L~~~~-~~~~~~I~flf~~~EE~gl~GS~~f~~~h-~~-------~~~v~----------- 254 (711)
.++-||-.||.+++|+++.+.... ..+....++++++-||.|..|++.-.... +. +.+..
T Consensus 247 s~rlDnr~~~~~~l~al~~~~~~~~~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~~~~~ 326 (465)
T PTZ00371 247 SPRLDNLGSSFCAFKALTEAVESLGENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDSFAKL 326 (465)
T ss_pred EecchhHHHHHHHHHHHHhccccccCCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhHHHHH
Confidence 468899999999999998764310 11334444555999999998887755322 11 01111
Q ss_pred ----EEEEeecCcC------------------CCCccccc----cCCCHHHHHHHHHHccCCCCcccccccccCCCCCCC
Q 005157 255 ----VAVDLEAMGI------------------GGRSALFQ----AGPNLWAVENFAAVAKYPSGQIIGQDLFASGVFETA 308 (711)
Q Consensus 255 ----a~inLD~~G~------------------gG~~~lfq----tg~~~~l~~~~~~~a~~p~~~~l~~~~f~~g~ips~ 308 (711)
.+|..|++-+ +|..+-+. ..+++.....+.+.++. .+ .-.|.....+-.|++
T Consensus 327 ~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~-~~-Ip~Q~~~~~~d~~~G 404 (465)
T PTZ00371 327 MARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKK-AN-IPIQEFVVKNDSPCG 404 (465)
T ss_pred HhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHH-cC-CCEEEEEecCCCCCc
Confidence 7788887533 12211111 11255555555544321 11 112222222345678
Q ss_pred CchHHHhh-cCCceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Q 005157 309 TDFQVYTE-VAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLL 361 (711)
Q Consensus 309 TD~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~ 361 (711)
||-.++.. ..|+|.+|+.- +.-.-||+..+...-|.. ++.+.+.++..
T Consensus 405 sTig~i~~s~~Gi~tvDiGi--P~l~MHS~rE~~~~~D~~---~~~~l~~af~~ 453 (465)
T PTZ00371 405 STIGPILSSNLGIRTVDIGI--PQLAMHSIREMCGVVDIY---YLVKLIKAFFT 453 (465)
T ss_pred chHHHHHHhCCCCcEEEech--hhcccccHHHHccHHHHH---HHHHHHHHHHH
Confidence 88888765 47999999852 222469988776655554 44444444443
No 89
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=79.86 E-value=11 Score=43.79 Aligned_cols=93 Identities=22% Similarity=0.340 Sum_probs=67.8
Q ss_pred ccceEEEEEcCCCCCCCCCCeEEEeecCcccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcch
Q 005157 161 DLNHIVLRILPKYASEAGENAILVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGA 240 (711)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~Vll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~GS 240 (711)
++.||++.+++.. .++.+.+++..-||.-. |. |-.|++.++..++.++++. --.++|+|+++++ ...|-
T Consensus 119 ~G~NvyGilRAPR--gdgtEsivl~vP~~~~~---~~--~~~~v~l~lsla~~f~r~~-yWsKDII~v~~d~---~~~g~ 187 (617)
T KOG3566|consen 119 SGENVYGILRAPR--GDGTESIVLVVPYGRSS---GS--NSASVALLLSLADYFSRWV-YWSKDIIFVFTDG---PALGL 187 (617)
T ss_pred CCceEEEEEecCC--CCCcceEEEEEecccCC---Cc--chhHHHHHHHHHHHhcCCe-eecccEEEEEeCC---ccccH
Confidence 3789999997643 34668899988888654 33 3788999999999998753 3579999999988 45677
Q ss_pred HHHHhcC-C-C---------------cCCceEEEEeecCcC
Q 005157 241 HSFVTQH-P-W---------------STTIRVAVDLEAMGI 264 (711)
Q Consensus 241 ~~f~~~h-~-~---------------~~~v~a~inLD~~G~ 264 (711)
++|.+++ . . +....+.+++|....
T Consensus 188 ~AwLeaYhd~~s~~~~~~ep~~i~~ragal~aal~l~~se~ 228 (617)
T KOG3566|consen 188 DAWLEAYHDILSLTGISVEPDEIQARAGALAAALVLEVSEK 228 (617)
T ss_pred HHHHHHhhccccccccccccccccccccceeeEEEEEeccc
Confidence 8888753 2 1 123467888887743
No 90
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=58.36 E-value=21 Score=31.76 Aligned_cols=30 Identities=13% Similarity=-0.013 Sum_probs=19.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhhccc
Q 005157 40 SAKRSGLVWTVVFATLICASYGVYYYQYEH 69 (711)
Q Consensus 40 ~~~r~~~~~l~~~ll~~~~~~~v~~~~~~~ 69 (711)
+.-++.+.-+.+.++++-.+|+++.|....
T Consensus 27 ~~sp~W~~p~m~~lmllGL~WiVvyYi~~~ 56 (87)
T PF06781_consen 27 KPSPRWYAPLMLGLMLLGLLWIVVYYISGG 56 (87)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhhhhcccC
Confidence 455666666666666666667777766544
No 91
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=49.23 E-value=1.8e+02 Score=26.84 Aligned_cols=49 Identities=10% Similarity=-0.019 Sum_probs=36.2
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 005157 421 ASLVMGGYPAAVSLALTCLSAILMLVLSISFSVVIAFILPQISSSPVPYV 470 (711)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~~~~~~msw~ 470 (711)
..+.+.+.....++.....+.+.....+...+.++|.+..+. +.+|+++
T Consensus 32 ~~lRkhk~~~f~pi~~l~mg~l~p~~~G~itSa~IA~vY~a~-~~~M~~~ 80 (105)
T PF10190_consen 32 FTLRKHKFGRFIPIVILLMGVLGPLTGGSITSAAIAGVYRAA-GFRMSTW 80 (105)
T ss_pred HHHhhccchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCcccHH
Confidence 334444445567777777777888888999999999998754 7888875
No 92
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=48.33 E-value=2.8e+02 Score=31.79 Aligned_cols=40 Identities=15% Similarity=0.371 Sum_probs=23.3
Q ss_pred hhccCCCCCcccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005157 458 ILPQISSSPVPYVASPWLTVGLFAAPAFLGALTGQHLGYIVLKA 501 (711)
Q Consensus 458 ~~~~~~~~~msw~s~~~l~~gly~~p~~~g~~~~~~~~~~~~~~ 501 (711)
+++...|.+++|. .|+..++ +|.++...+...+.+++++.
T Consensus 203 ~l~~~~g~~isf~--~w~~~~~--p~~ii~~~~~~~~~~~l~~~ 242 (471)
T PF00939_consen 203 FLESATGISISFL--DWFIYAL--PPGIIMLVLMWLILYKLFKP 242 (471)
T ss_pred HHHhhcCCcccHH--HHHHHHH--HHHHHHHHHHHHHHHHHhcc
Confidence 4444567899998 7866544 45565555444444444443
No 93
>PRK08126 hypothetical protein; Provisional
Probab=43.15 E-value=5.7e+02 Score=29.37 Aligned_cols=54 Identities=7% Similarity=0.055 Sum_probs=33.3
Q ss_pred CeEEEeecCcccCCCCCC--CCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q 005157 180 NAILVSSHIDTVSAGEGA--GDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEE 234 (711)
Q Consensus 180 ~~Vll~aH~DSv~~spGA--~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE 234 (711)
..|.+.+|.|..|...|. ....-+.+=.-.+.++|.+.|.+ ...|.....++.+
T Consensus 354 ~~I~V~GHTD~~p~~s~~~~~N~~LS~~RA~aV~~~L~~~Gv~-~~ri~~~G~G~~~ 409 (432)
T PRK08126 354 GKVTVTGHTDNQPIRSAQFASNLVLSEKRAAQVAQMLQSAGVP-ASRLEAVGKGDAQ 409 (432)
T ss_pred CeEEEEEecCCCCccCCccchHHHHHHHHHHHHHHHHHHcCCC-HHHeEEEEecCcC
Confidence 369999999999864443 23344555556677777766543 3446555555444
No 94
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=42.60 E-value=54 Score=36.20 Aligned_cols=56 Identities=11% Similarity=0.199 Sum_probs=43.9
Q ss_pred CCCCchHHHhhcCCceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 005157 306 ETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 366 (711)
Q Consensus 306 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~~La~~ 366 (711)
+..||...|.+ .|+|.+.+... +...-|++. |+++.+.+....+....++.+|++.
T Consensus 338 ~g~tD~~~~~~-~gip~v~~Gpg-~~~~~H~~~---E~i~~~~l~~~~~i~~~~i~~l~~~ 393 (394)
T PRK08651 338 LGGTDARFFGA-KGIPTVVYGPG-ELELAHAPD---EYVEVKDVEKAAKVYEEVLKRLAKG 393 (394)
T ss_pred cCcccHHHHhh-CCCcEEEECCC-ChHhcCCCC---ceeEHHHHHHHHHHHHHHHHHhhcC
Confidence 46799999987 89999765321 222467755 8999999999999999999998764
No 95
>PRK07522 acetylornithine deacetylase; Provisional
Probab=41.54 E-value=74 Score=34.95 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHHhhcCCceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHH
Q 005157 275 PNLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGE 354 (711)
Q Consensus 275 ~~~~l~~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~ 354 (711)
++..+++.++++...+... ..+..||-..|.. .|+|.+.+.... ....||+. |+++.+.+.+..+
T Consensus 310 ~~~~~v~~~~~~~~~~~~~----------~~~~~td~~~~~~-~gip~v~~Gpg~-~~~~H~~~---E~i~i~~l~~~~~ 374 (385)
T PRK07522 310 EDAAAARLVRALTGDNDLR----------KVAYGTEAGLFQR-AGIPTVVCGPGS-IEQAHKPD---EFVELAQLAACEA 374 (385)
T ss_pred CCcHHHHHHHHHhCCCCcc----------eEeeecchHHhcc-CCCCEEEECCCC-hhhCCCCC---ccccHHHHHHHHH
Confidence 3455777777654332210 1234689999986 899997654322 23678855 8899999999999
Q ss_pred HHHHHHHHHh
Q 005157 355 NMLDFLLQTA 364 (711)
Q Consensus 355 ~vl~ll~~La 364 (711)
.+..++..+|
T Consensus 375 ~~~~~~~~~~ 384 (385)
T PRK07522 375 FLRRLLASLA 384 (385)
T ss_pred HHHHHHHHHh
Confidence 9999988876
No 96
>PRK08596 acetylornithine deacetylase; Validated
Probab=40.08 E-value=60 Score=36.53 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=45.7
Q ss_pred CCCCchHHHhhcCCceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 005157 306 ETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASST 367 (711)
Q Consensus 306 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~~La~~~ 367 (711)
+..||...|.+ .|+|++.+.... ....|++. |+++.+.+.+..+.+..++..+...+
T Consensus 363 ~g~tD~~~~~~-~gip~v~~Gpg~-~~~~H~~~---E~v~i~~~~~~~~~~~~~l~~~~~~~ 419 (421)
T PRK08596 363 TTVTDGGWFAE-FGIPAVIYGPGT-LEEAHSVN---EKVEIEQLIEYTKVITAFIYEWCHTK 419 (421)
T ss_pred eeecchhhhhh-cCCCEEEECCCc-ccccCCCC---ceEEHHHHHHHHHHHHHHHHHHhCCC
Confidence 45789999988 899998765432 34578855 89999999999999999999887653
No 97
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=38.56 E-value=5.5e+02 Score=27.86 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=41.1
Q ss_pred EEeecCcccCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCCCCCcchHHHHhcCCCc
Q 005157 183 LVSSHIDTVSAGEGAGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEEEGLNGAHSFVTQHPWS 250 (711)
Q Consensus 183 ll~aH~DSv~~spGA~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE~gl~GS~~f~~~h~~~ 250 (711)
++.++-+... |..+| ...+=|+++.|......--..+.++++..||...+-...+..++|..
T Consensus 225 lva~~g~~~l--p~~~~----~~~l~~aL~~l~~~~~~~l~a~evlWtP~~~gd~Ls~~ell~~yP~L 286 (289)
T PF07466_consen 225 LVAAEGKLKL--PTINS----AEDLREALRKLGSISSDRLLAVEVLWTPQAEGDTLSEDELLADYPDL 286 (289)
T ss_pred EEEecCCcCC--CCCCC----HHHHHHHHHHHhCCChhheeeEEEEECCCCCCCccCHHHHHHhCccc
Confidence 3445555522 44333 35566777777653223345689999999999999999888888764
No 98
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=36.03 E-value=12 Score=39.96 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred hHHHHH
Q 005157 430 AAVSLA 435 (711)
Q Consensus 430 ~~~~~~ 435 (711)
.++.+.
T Consensus 76 LLCPLG 81 (381)
T PF05297_consen 76 LLCPLG 81 (381)
T ss_dssp ------
T ss_pred hcCcch
Confidence 344443
No 99
>PRK07338 hypothetical protein; Provisional
Probab=35.21 E-value=62 Score=35.96 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=44.2
Q ss_pred CCCCCchHHHhhcCCceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 005157 305 FETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 366 (711)
Q Consensus 305 ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~~La~~ 366 (711)
.+..||-..|.. .|+|.+++ +...+...|++. |+++.+++....+.+..++..++..
T Consensus 344 ~~g~tDa~~~~~-~giP~v~~-~Gpg~~~~H~~~---E~v~i~~l~~~~~~~~~~l~~~~~~ 400 (402)
T PRK07338 344 SGGVCDGNNLAA-AGLPVVDT-LGVRGGNIHSED---EFVILDSLVERAQLSALILMRLAQG 400 (402)
T ss_pred CCccchHHHHhh-cCCCeEec-cCCCCCCCCCcc---ceEehhhHHHHHHHHHHHHHHHhcC
Confidence 356799999987 79999962 222233468865 8999999999999999999988654
No 100
>PRK07033 hypothetical protein; Provisional
Probab=33.54 E-value=7.8e+02 Score=28.18 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=34.3
Q ss_pred CeEEEeecCcccCCCCC--CCCChhHHHHHHHHHHHHHhcCCCCCCcEEEEEeCCCC
Q 005157 180 NAILVSSHIDTVSAGEG--AGDCSSCVAVMLELARVMSQWAHEFKNAVIFLFNTGEE 234 (711)
Q Consensus 180 ~~Vll~aH~DSv~~spG--A~Dd~sGva~~LE~ar~L~~~~~~~~~~I~flf~~~EE 234 (711)
..|.+.+|.|+.+...+ ..+...+.+=.-.+.++|.+.+..++ .|.....++++
T Consensus 345 ~~I~V~GHTD~~~~~~~~~~~N~~LS~~RA~aV~~~L~~~Gi~~~-ri~~~G~G~~~ 400 (427)
T PRK07033 345 GNVLVTGYSDNVPIRTARFPSNWELSQARAQAVRALLAARLGQPE-RVTAEGRGDSD 400 (427)
T ss_pred CeEEEEEEeCCCCccccccchHHHHHHHHHHHHHHHHHHcCCCcc-eEEEEEECCCC
Confidence 46999999999975333 23445555666677777877665443 46655555444
No 101
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=31.98 E-value=60 Score=36.38 Aligned_cols=58 Identities=9% Similarity=0.042 Sum_probs=45.9
Q ss_pred CCCCCchHHHhhcCCceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcC
Q 005157 305 FETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASS 366 (711)
Q Consensus 305 ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~~La~~ 366 (711)
.++.||...|.. .|+|.+-+.+...+..-|++. |+++.+.+....+.+..++.+|+++
T Consensus 352 ~~g~tDa~~~~~-~gip~v~~g~G~~~~~aH~~n---E~i~i~~~~~~~~~~~~~~~~~~~~ 409 (410)
T PRK06133 352 TGGGTDAAFAAG-SGKAAVLEGFGLVGFGAHSND---EYIELNSIVPRLYLLTRMIMELSRD 409 (410)
T ss_pred CCCCchHHHHHh-cCCCceEecccCCCCCCCCCC---cEEEcccHHHHHHHHHHHHHHhhcC
Confidence 356799999988 799888655444344578876 8999999999999999999988764
No 102
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=31.33 E-value=52 Score=25.98 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=23.5
Q ss_pred HHHHhCCchhHHHHHHHHHHHHHHHHhcCCCCCCC
Q 005157 651 YVHLSGAKGPIAFASFILVGLSIIMVSSGIIPPFS 685 (711)
Q Consensus 651 ~~~~~~~~~~~~~~l~~~~~~s~~l~~~~~~fPy~ 685 (711)
...+++|.+.-..++.++.++.++.+..+...||.
T Consensus 8 ~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~~ 42 (56)
T PF12911_consen 8 AWRRFRRNKLAVIGLIILLILVLLAIFAPFISPYD 42 (56)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34667777777777766665556656667778884
No 103
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=28.45 E-value=96 Score=27.60 Aligned_cols=27 Identities=19% Similarity=0.022 Sum_probs=15.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 005157 41 AKRSGLVWTVVFATLICASYGVYYYQY 67 (711)
Q Consensus 41 ~~r~~~~~l~~~ll~~~~~~~v~~~~~ 67 (711)
.-+..+.-+.+.++++-..|+++.|..
T Consensus 28 ~sp~W~~~~m~glm~~GllWlvvyYl~ 54 (87)
T PRK00159 28 PSSVWYVVLMLGLMLIGLAWLVVNYLA 54 (87)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555555555555555566665544
No 104
>PRK13381 peptidase T; Provisional
Probab=27.21 E-value=90 Score=34.81 Aligned_cols=77 Identities=18% Similarity=0.091 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHccCCCCcccccccccCCCCCCCCchHHHhhcCCceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHHH
Q 005157 276 NLWAVENFAAVAKYPSGQIIGQDLFASGVFETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGEN 355 (711)
Q Consensus 276 ~~~l~~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~ 355 (711)
++.+++...++... .+... .. ...+..||...|.+ .|+|.+.+... +. .-|++. |+++.+.+.+..+.
T Consensus 327 ~~~lv~~l~~a~~~-~g~~~---~~--~~~~g~tDa~~~~~-~giP~v~~GpG-~~-~aH~~d---E~v~i~~l~~~~~v 394 (404)
T PRK13381 327 DRRAVDLAFDAMKE-LGIEP---KV--IPMRGGTDGAALSA-KGLPTPNLFTG-AH-NFHSRF---EFLPVSSFVKSYEV 394 (404)
T ss_pred CHHHHHHHHHHHHH-cCCCe---ee--ccCCccchHHHHhc-CCCCeEEECcc-cc-CCcCcc---eeEEHHHHHHHHHH
Confidence 55666666665432 22110 01 12456899999987 79999986433 22 357743 78999999999999
Q ss_pred HHHHHHHHh
Q 005157 356 MLDFLLQTA 364 (711)
Q Consensus 356 vl~ll~~La 364 (711)
+..++.+++
T Consensus 395 ~~~~~~~~~ 403 (404)
T PRK13381 395 TITICLLAA 403 (404)
T ss_pred HHHHHHHhc
Confidence 999998876
No 105
>PRK07079 hypothetical protein; Provisional
Probab=26.74 E-value=1.8e+02 Score=33.30 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=42.7
Q ss_pred CCCchHHHhhcCCceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCC
Q 005157 307 TATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTASST 367 (711)
Q Consensus 307 s~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~~La~~~ 367 (711)
..+|-..|.+..|+|.+.+.....+...|++. |+++.+.+....+.+..++..+++..
T Consensus 401 g~~d~~~~~~~~giP~v~~g~~~~~~~~H~~d---E~v~l~~l~~~~~~~~~~~~~~~~~~ 458 (469)
T PRK07079 401 GSLPNDVFADILGLPTLWVPHSYPACSQHAPN---EHLLASVAREGLQIMAGLFWDLGEQG 458 (469)
T ss_pred cchhHHHHHHHhCCCEEEecCCCCCccCcCCC---CCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 34577778764799998542212222358854 78999999999999999999998753
No 106
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=25.89 E-value=1.2e+02 Score=33.55 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=43.3
Q ss_pred CCCCchHHHhhcCCceEEEEeeeCC-CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 005157 306 ETATDFQVYTEVAGLSGLDFAYTDK-SAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTAS 365 (711)
Q Consensus 306 ps~TD~~~F~~~~GIPgld~a~~~~-~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~~La~ 365 (711)
++.||...|++ .|+|.+.+.-... ....|++. |+++.+.+.+..+....++.++++
T Consensus 343 ~g~tDa~~~~~-~gip~v~fgp~~~~~~~aH~~d---E~i~i~~l~~~~~~~~~~l~~~~~ 399 (400)
T TIGR01880 343 PGSTDSRYIRA-AGVPALGFSPMNNTPVLLHDHN---EFLNEAVFLRGIEIYQTLISALAS 399 (400)
T ss_pred cCcchHHHHHh-CCCCeEEECCccCCcccccCCC---CceEHHHHHHHHHHHHHHHHHhhc
Confidence 46799999987 8999976543222 22578865 479999999999999999998864
No 107
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=24.49 E-value=2.9e+02 Score=23.01 Aligned_cols=31 Identities=19% Similarity=-0.002 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Q 005157 637 IAVVSCLTLVYLLSYVHLSGAKGPIAFASFI 667 (711)
Q Consensus 637 ~a~~~~l~~~~l~p~~~~~~~~~~~~~~l~~ 667 (711)
++.+..+....+-|+..+.|+|..-+...+.
T Consensus 13 is~~lG~~~~~~~pl~~llk~p~tai~~i~~ 43 (61)
T PF05421_consen 13 ISVMLGLFLIIFEPLKPLLKNPVTAIALIGI 43 (61)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 3334455567889999999998766555433
No 108
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=24.47 E-value=1.4e+02 Score=32.70 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=42.0
Q ss_pred CCCCchHHHhhcCCceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q 005157 306 ETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTA 364 (711)
Q Consensus 306 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~~La 364 (711)
+..||.+.|.+ .|+|.+.+.-. ....|++. |+++.+.+....+....++.+|.
T Consensus 322 ~g~tda~~~~~-~g~p~v~~Gp~--~~~~H~~~---E~i~~~~l~~~~~~~~~~~~~~~ 374 (375)
T PRK13009 322 GGTSDARFIAD-YGAQVVEFGPV--NATIHKVN---ECVSVADLEKLTRIYERILERLL 374 (375)
T ss_pred CCCccHHHHHH-cCCCeEEeccC--cccCCCCC---CcEEHHHHHHHHHHHHHHHHHHh
Confidence 45689998988 89999876533 23478876 89999999999999988887764
No 109
>PRK08652 acetylornithine deacetylase; Provisional
Probab=23.53 E-value=1.4e+02 Score=32.24 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=43.0
Q ss_pred CCCCCchHHHhhcCCceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhc
Q 005157 305 FETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTAS 365 (711)
Q Consensus 305 ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~~La~ 365 (711)
.++.||-+.|.. .|+|.+.+... +....|++. |+++.+.+.+..+.+..++..+..
T Consensus 291 ~~g~tDa~~~~~-~gip~v~~Gpg-~~~~~H~~n---E~i~i~~l~~~~~~l~~~~~~~~~ 346 (347)
T PRK08652 291 MRSWTDAINFRY-NGTKTVVWGPG-ELDLCHTKF---ERIDVREVEKAKEFLKALNEILLE 346 (347)
T ss_pred CCccchhHHHHH-CCCCEEEECCC-chhhcCCCC---ceeeHHHHHHHHHHHHHHHHHHhc
Confidence 456799999987 89999865432 123568864 789999999999999999887653
No 110
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=22.53 E-value=3.5e+02 Score=31.23 Aligned_cols=62 Identities=19% Similarity=0.465 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhccccccCCCCCCCCccchh---HHHHHHHHHHHHHHHHHHHHHHHH-----hCCchhHHHHHHHHHHH
Q 005157 600 AGNIIRLANVLVATLVRFDRNPGGTPEWLGN---VIFAVVIAVVSCLTLVYLLSYVHL-----SGAKGPIAFASFILVGL 671 (711)
Q Consensus 600 ~~~~~~~~~~~~p~~gR~~~~~~~~Pd~~~d---~~ia~~~a~~~~l~~~~l~p~~~~-----~~~~~~~~~~l~~~~~~ 671 (711)
..++.++++++|++. | |+ | ++.+.+.++++ .--++|++.. .||+-.|+....++.++
T Consensus 547 ~~Lia~~L~L~iGli----------P-Wi-DN~aHlfG~i~GLl~---s~~~~PYi~Fg~~d~yrKr~~ilIs~ivf~~L 611 (652)
T KOG2290|consen 547 FHLIATLLVLCIGLI----------P-WI-DNWAHLFGTIFGLLT---SIIFLPYIDFGDFDLYRKRFYILISQIVFSGL 611 (652)
T ss_pred HHHHHHHHHHHhccc----------c-ch-hhHHHHHHHHHHHHH---HHHhhccccccchhhhhhHHHHHHHHHHHHHH
Confidence 345556667777553 2 32 3 44444444333 3345787754 44444555544444433
Q ss_pred HHHHH
Q 005157 672 SIIMV 676 (711)
Q Consensus 672 s~~l~ 676 (711)
-.+++
T Consensus 612 la~Lv 616 (652)
T KOG2290|consen 612 LAILV 616 (652)
T ss_pred HHHHH
Confidence 33333
No 111
>PRK08554 peptidase; Reviewed
Probab=22.30 E-value=1.3e+02 Score=34.24 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=42.8
Q ss_pred CCCCCchHHHhhcCCceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHh
Q 005157 305 FETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLLQTA 364 (711)
Q Consensus 305 ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~~La 364 (711)
.++.||-+.|.. .|+|.+++.-. +..-|+. =|+++.+++....+....++.+|.
T Consensus 384 ~~GgtDa~~~~~-~Gip~v~~Gp~--~~~~H~~---~E~v~i~~l~~~~~i~~~~i~~l~ 437 (438)
T PRK08554 384 GPGASDSRYFTP-YGVKAIDFGPK--GGNIHGP---NEYVEIDSLKKMPEVYKRIALRLL 437 (438)
T ss_pred cCCchHHHHHHh-cCCCceEECCC--CCCCCCC---cceEEHHHHHHHHHHHHHHHHHHh
Confidence 467899999987 89999986432 2346773 388999999999999999888764
No 112
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=21.90 E-value=2.1e+02 Score=31.46 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=38.3
Q ss_pred CCCCchHHHhhcCCceEEEEeeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Q 005157 306 ETATDFQVYTEVAGLSGLDFAYTDKSAVYHTKNDRLDLLKPGSLQHLGENMLDFLL 361 (711)
Q Consensus 306 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i~~~sLq~~g~~vl~ll~ 361 (711)
++.||...|.. .|+|++.+.. .....|++. |+++.+.+.+..+....++.
T Consensus 349 ~g~td~~~~~~-~gip~v~~Gp--~~~~~H~~n---E~v~i~~l~~~~~~~~~~~~ 398 (400)
T PRK13983 349 GGGTVAAFLRK-KGYPAVVWST--LDETAHQPN---EYAKISNLIEDAKVFALLLL 398 (400)
T ss_pred cCcHHHHHHHH-cCCCEEEeCC--ccccCCCCC---ceeeHHHHHHHHHHHHHHHh
Confidence 56789888877 7999987732 233578865 89999999998888777664
No 113
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=21.35 E-value=3.3e+02 Score=24.88 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHHHHH
Q 005157 82 RGFSELEAMKHVKALT 97 (711)
Q Consensus 82 ~~fs~erA~~~L~~L~ 97 (711)
.+...++|...|++.-
T Consensus 87 ~~WA~rEA~~rl~~rE 102 (105)
T PF10183_consen 87 QTWARREAYRRLERRE 102 (105)
T ss_pred HHHHHHHHHHHHhHHh
Confidence 4566777777776543
No 114
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.02 E-value=6.9e+02 Score=29.73 Aligned_cols=11 Identities=27% Similarity=1.344 Sum_probs=8.5
Q ss_pred cCceeeEEecc
Q 005157 699 CGCKWKVWWKT 709 (711)
Q Consensus 699 ~~~~~~~~~~~ 709 (711)
|...|+-|||.
T Consensus 547 C~Edy~WwWRs 557 (628)
T KOG1278|consen 547 CAEDYNWWWRS 557 (628)
T ss_pred Hhcccceeeee
Confidence 56669999984
Done!