Query 005159
Match_columns 711
No_of_seqs 270 out of 1101
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 19:01:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1162 Predicted small molecu 100.0 2E-128 5E-133 1075.3 49.8 587 1-711 1-617 (617)
2 PF03124 EXS: EXS family; Int 100.0 6.5E-71 1.4E-75 599.4 23.1 301 384-686 2-345 (345)
3 COG5409 EXS domain-containing 100.0 1.5E-56 3.2E-61 459.1 15.0 336 346-698 4-379 (384)
4 PF03105 SPX: SPX domain; Int 100.0 3.4E-31 7.4E-36 277.5 20.1 269 1-294 1-274 (275)
5 KOG1161 Protein involved in va 100.0 3.6E-31 7.8E-36 272.8 18.4 177 1-325 1-177 (310)
6 COG5036 SPX domain-containing 99.9 1.6E-23 3.4E-28 219.7 14.9 168 1-324 1-168 (509)
7 COG5408 SPX domain-containing 99.8 1.2E-18 2.6E-23 179.9 16.2 54 241-294 238-291 (296)
8 KOG4460 Nuclear pore complex, 41.8 4.6E+02 0.01 30.5 13.3 36 120-155 606-644 (741)
9 PF10777 YlaC: Inner membrane 39.5 2.2E+02 0.0047 27.5 8.8 12 347-358 36-47 (155)
10 PF03904 DUF334: Domain of unk 32.4 5.8E+02 0.013 26.4 16.2 31 123-153 46-76 (230)
11 PF14193 DUF4315: Domain of un 30.9 1.4E+02 0.0031 25.8 5.7 34 119-156 4-37 (83)
12 PF10112 Halogen_Hydrol: 5-bro 21.0 8.3E+02 0.018 24.3 10.3 73 245-321 112-185 (199)
13 COG3937 Uncharacterized conser 21.0 1.6E+02 0.0035 26.7 4.4 45 112-156 61-105 (108)
No 1
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-128 Score=1075.26 Aligned_cols=587 Identities=55% Similarity=0.912 Sum_probs=508.4
Q ss_pred CcchhHHhhhcchhHHHhcCChhhHHHHHHHHhhhhhcccCCCCcccccccccccccchhhhcccccccccccCCCCCCC
Q 005159 1 MKFGKEFEAQLVQEWREAYMDYNYLKTILKEILHFKQKHTASPMTATTKEGRSLKRKVSFYRAFSGLTNKYRSYSPRKYR 80 (711)
Q Consensus 1 MKFgk~L~~~~vPEWr~~YidYk~LKk~IK~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (711)
|||||+|++|++|||+++|+||+.|||+||++.+.... +
T Consensus 1 MKFgk~~~~q~~pEW~~ay~dY~~lK~~l~~i~~~~~~-----~------------------------------------ 39 (617)
T KOG1162|consen 1 MKFGKELESQLVPEWRQAYIDYKYLKKLLKEIIENKPS-----S------------------------------------ 39 (617)
T ss_pred CcchHHHHHhcCHHHHHHhhhHHHHHHHHHHHHhcCCC-----c------------------------------------
Confidence 99999999999999999999999999999999873211 0
Q ss_pred CCcchhhhhccccCCCchhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005159 81 HEEDEAILVSSTVDEGDQYQTMFLMSSDEGGQFEVVFFRRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALIALRIKI 160 (711)
Q Consensus 81 ~~e~~~~~~~~~~~dg~~~~~~~~~~~e~~~e~e~~Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~~~r~~~ 160 (711)
| ++++.+..+..++.|..||+.||.||+|||+||.+|++|+.+|.+.|.+|++.+.+.|...
T Consensus 40 --~----------------~t~~~~~~~~~~~~~~~Ff~~ld~el~Kvn~Fy~~k~~e~~~~~~~L~~ql~~~~~~r~~~ 101 (617)
T KOG1162|consen 40 --E----------------ETTFLMVSEEGGEFEEVFFRRLDEELNKVNKFYKEKVKEAREEAEELNKQLDALIALRVKS 101 (617)
T ss_pred --C----------------ccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 0 1112222234468899999999999999999999999999999999999999998876420
Q ss_pred CCcchhhchhhhhHhhhhhcccCCCCCCCcccccCCcccchhhhhhhcccCCCCCCcccccccccccccccccccHHHHH
Q 005159 161 DDPIKQQGQLHMEKIQELEMSSEGSSDGKTRADMNGFSRASLEVLDHVKLNVEPETPVSILKGVLMTSKSDRSFSRNELK 240 (711)
Q Consensus 161 ~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~~~~~~ 240 (711)
. ++...++ + +. . ....|+++ ++
T Consensus 102 ~------------------~~~~~~~-----------~------------------~~-~---------~~~~f~~~-~~ 123 (617)
T KOG1162|consen 102 R------------------SSVDISD-----------R------------------AA-R---------LRGKFTKV-LR 123 (617)
T ss_pred c------------------ccccccc-----------c------------------cc-h---------hhhhhhHH-HH
Confidence 0 0000000 0 00 0 01225666 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHhhhhcCCCcchHHHHHHcccCCCCChhHHHHHHHHHHHHHHHHh
Q 005159 241 KAEALMTRAFVEFYQKLRLLKSYCFLNQLAFSKIMKKYDKITSRNASKAYLQMVDNSNLGSSDEVTKLMERVEATFVKHF 320 (711)
Q Consensus 241 ~a~~~Lk~a~~e~y~~l~~L~~y~~LN~tgF~KIlKK~DK~~~~~~~~~y~~~v~~~~f~~~~~l~~l~~~ve~ly~~~f 320 (711)
+++++||.|+.|+|+.|.+||+|+.||.|||+||+|||||.++++. ..|++.|+.++|.++|++++|+.+||++|+++|
T Consensus 124 ~~e~~lk~af~Efy~~L~llk~y~~lN~~~f~KI~KKyDK~~~~~~-~~~~~~v~~s~f~~~~~i~~l~~~Ve~~f~~~f 202 (617)
T KOG1162|consen 124 KAEEKLKLAFSEFYLKLRLLKNYQFLNVTAFRKILKKYDKITSRDA-KRYVKMVDKSYFTSSDEITRLMLEVEETFTKHF 202 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred cCCChHhHhhhcCCcccccCcchhhhHHHHHHHHHHHHHHHHHHHHhccccCCCCcchhhhhhhhHhhHHHHHHHHHHHH
Q 005159 321 ANGNHRKGMHTLRPKAKRERHTITFFLGTFFGFSLALIVAVVVAIHARNILESPGRTQYMENIFPLYSFFGYIILHMLMY 400 (711)
Q Consensus 321 ~~g~~~~a~~~Lr~~~~~~~~~~~F~~Gl~~G~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~l~ 400 (711)
++|||++||+.||++ .++.|+.+|.+|++.||++.+.++++.+++.+.+...+ +..|+..++|+|+ +++++++++++
T Consensus 203 an~nr~~~m~~lr~~-~~e~h~~~~~~~f~~g~~~~l~val~~~~~~~~~~~~~-~~~~~~~~~~l~~-~~~v~l~~fl~ 279 (617)
T KOG1162|consen 203 ANGNRRKAMKVLRPK-LKEKHRPTFSTGFFVGCGIGLSVALVALIYLRNILQSE-QRFYMETMFPLYG-FGLVVLHKFLY 279 (617)
T ss_pred hCCChhHhhhhcCCc-ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHH-HHHHHHHHHHh
Confidence 999999999999999 78899999999999999999999999988888877765 7889999999999 99999999999
Q ss_pred HHHHHHHhhcCCCceeeecccCCCCcchhhHHHHHHHHHHHHHHHHHhhhcccCCcccchhHHHHH------H--hhc--
Q 005159 401 AGDIYFWKRYRVNYSFIFGLKQGTELGYREVLLLSSGLAVLTFSCALSNLDMEMDPRTKSFRALTE------V--VPL-- 470 (711)
Q Consensus 401 ~~n~~~w~~~~INY~~IF~~~~~~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~------~--~pl-- 470 (711)
|+|||+|+++||||+||||+++++++++++++++++..++++.++++.++++.+++.+....++.. + .|.
T Consensus 280 ~~niy~W~~~rVNy~fIf~~~~~~~l~~~~~l~i~~~~~~~~~l~~l~~l~~~~~~~~~~~~Pl~ll~~~~~~L~~Pf~~ 359 (617)
T KOG1162|consen 280 NVNIYEWSRTRVNYKFIFEFDQRTELGYRDILLIHNTNGILEFLPVLKNLDMSMSGQTTELSPLILLLLFFFLLVCPFNT 359 (617)
T ss_pred cCchHHHHHhcCCceeeecCCccccccHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcccchHHHHHHHHheeeccchh
Confidence 999999999999999999999999999999999999999999999999988776665411111100 0 111
Q ss_pred -------------------cceeeecCceehhHhhhhHHHhhhchhheeeeeecCCCCcCCCCCCCcchhhHHHHHHHhh
Q 005159 471 -------------------GLLIVTLPDFFLADQLTSQVQALRSLEFYVCYYGWGDFKRRSNNCNQSEIFQKFYVVIAII 531 (711)
Q Consensus 471 -------------------~l~~V~F~dfflaD~ltSl~~~l~d~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~l 531 (711)
++..|.|+|||+|||+||++.+++|+++++|+|++|+|...+ +|..++.+..+.++++++
T Consensus 360 fY~sSRf~ll~~l~rvi~spl~~V~~~DFfl~Dql~S~v~a~~~l~~~~C~y~~~~~~~~~-~~~~~~~~~~~~~iva~l 438 (617)
T KOG1162|consen 360 FYRSSRFWLLKRLFRVLSSPLYKVLFVDFFLADQLTSLVLALRDLEFFICYYGTGDFQARR-TCYCKDDYIEFQSIVAVL 438 (617)
T ss_pred hhHhhHHHHHHHHHHHHhccceeeccccccHHHHHHHHHHHHHhHHHhheeeccccccccc-ccccccchHHHHHHHHHH
Confidence 122299999999999999999999999999999998776544 666666666778999999
Q ss_pred hhHHHHHHHHHHhhhccCcchhhhhHHHHHHHHHHHHHHhhhccCCc-hHHHHHHHHHhhhhHHHHHHHHHhhhccccCC
Q 005159 532 PYWFRFLQCLRRLFEEQDRVHGLNALKYSSTIVAVATRTIYSLRAGK-TLLIVAAASSGVATIANTYWDIAIDWGLLRRN 610 (711)
Q Consensus 532 P~~~R~~QClrry~dt~~~~hl~Na~KY~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~s~ys~~WDv~mDWgL~~~~ 610 (711)
|+|+|++||+|||+|++..+||+||+||+++++++++..+|+..++. .|+++|++++.+||+|+++||++|||||++++
T Consensus 439 P~~~RfLQClRR~~d~~~~~hL~NAlKY~~~i~~v~~~~~y~~~~~~~~~~~l~~~~s~vaS~y~~~WDvv~DWgLl~~~ 518 (617)
T KOG1162|consen 439 PYWFRFLQCLRRYRDEKAFPHLLNALKYSTTILAVMLTTLYRILPGSSLWFALWILSSKVASLYTTYWDVVMDWGLLNRK 518 (617)
T ss_pred HHHHHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHheeccccccc
Confidence 99999999999999998899999999999999999999999988875 99999999999999999999999999999999
Q ss_pred CCCcCCcccccccCcchhhHHHHHhHHHHHHHHHHhhcccCCccchhhHHHHHHHHHHHHhhhhhhheehhhhhhhccCC
Q 005159 611 SRNPWLRDKLIVPIRSVYFIAMVLNILLRLAWMQTVLGFTEAPFLHRTALIAVVASLEIIRRGIWNFFRLENEHLNNVGK 690 (711)
Q Consensus 611 ~~~~~LR~~l~~~~~~~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~~~~~~~~~~~~lEi~RR~iWn~fRvEnEhi~N~~~ 690 (711)
++ |+||++++||++|+||+||+.|++|||+|++.++........ .+..+++++.+||+||++||||||||||+||||+
T Consensus 519 ~~-~~lRd~l~~p~k~vYy~aiv~N~vLR~aW~~~~i~~~~~~~~-~~~~~~i~a~LEIiRRfiWnfFRLEnEhlnN~g~ 596 (617)
T KOG1162|consen 519 SK-PWLRDNLLYPQKWVYYSAIVLNFVLRFAWFFKTILVFHEEFL-SDSMVFIMALLEIIRRFIWNFFRLENEHLNNVGK 596 (617)
T ss_pred Cc-hhhHHHhcccchheehhHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 98 999999999999999999999999999998766532211112 6778899999999999999999999999999999
Q ss_pred ceeccccCCCCCCCCcccCCC
Q 005159 691 YRAFKSVPLPFNYDDDENKGS 711 (711)
Q Consensus 691 ~ra~~~iplp~~~~~~~~~~~ 711 (711)
|||+++||+|++..+++|+.+
T Consensus 597 fRa~~~v~l~~~~~~~~d~~~ 617 (617)
T KOG1162|consen 597 FRAFRDVPLPFSYMDESDKVS 617 (617)
T ss_pred ccccccCCchhhhcccccCCC
Confidence 999999999999999988753
No 2
>PF03124 EXS: EXS family; InterPro: IPR004342 The EXS domain is named after ERD1/XPR1/SYG1 and proteins containing this motif include the C-terminal of the SYG1 G-protein associated signal transduction protein from Saccharomyces cerevisiae, and sequences that are thought to be Murine leukemia virus (MLV) receptors (XPR1. The N-terminal of these proteins often have an SPX domain (IPR004331 from INTERPRO) []. While the N-terminal is thought to be involved in signal transduction, the role of the C-terminal is not known. This region of similarity contains several predicted transmembrane helices. This family also includes the ERD1 (ERD: ER retention defective) S. cerevisiae proteins. ERD1 proteins are involved in the localization of endogenous endoplasmic reticulum (ER) proteins. Erd1 null mutants secrete such proteins even though they possess the C-terminal HDEL ER lumen localization label sequence. In addition, null mutants also exhibit defects in the Golgi-dependent processing of several glycoproteins, which led to the suggestion that the sorting of luminal ER proteins actually occurs in the Golgi, with subsequent return of these proteins to the ER via `salvage' vesicles [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=6.5e-71 Score=599.41 Aligned_cols=301 Identities=39% Similarity=0.680 Sum_probs=253.4
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHhhcCCCceeeecccCCCCcchhhHHHHHHHHHHHHHHHHHhhhcccC---C-cccc
Q 005159 384 FPLYSFFGYIILHMLMYAGDIYFWKRYRVNYSFIFGLKQGTELGYREVLLLSSGLAVLTFSCALSNLDMEM---D-PRTK 459 (711)
Q Consensus 384 ~pl~~~~~l~~l~~~l~~~n~~~w~~~~INY~~IF~~~~~~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~---~-~~~~ 459 (711)
+|+||+++++++++|+||+|+++|+++||||++|||+|+++++++++++.++++++++++++++.++.... . +...
T Consensus 2 ~~~~R~~~L~~l~~~l~~~nl~v~~~~~Iny~~If~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~l~~~~~~~~~~~~~ 81 (345)
T PF03124_consen 2 PPPFRGLLLLILGLWLWGINLYVWSRYRINYVFIFELDPRNSLSYRQLFELASFLTIIWLLCFLIYLASVSPSIISFANW 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHhcCCcccCCcHHHHHhhhHHHHHHHHHHHHHHHHHHcCCcccccch
Confidence 67899999999999999999999999999999999999999999999999988888777766665542211 1 1110
Q ss_pred ----hhHHH-------HHHhhc---------------------cceeeecCceehhHhhhhHHHhhhchhheeeeeecCC
Q 005159 460 ----SFRAL-------TEVVPL---------------------GLLIVTLPDFFLADQLTSQVQALRSLEFYVCYYGWGD 507 (711)
Q Consensus 460 ----~~~~~-------~~~~pl---------------------~l~~V~F~dfflaD~ltSl~~~l~d~~~~~c~~~~~~ 507 (711)
.++.+ ..+.|. ++..|+|+|||+||||||++++++|+++++|+|..+.
T Consensus 82 ~~~~~~Pll~~~~~~~~l~~P~~~~~~~~R~~~~~~l~ril~~~~~~v~f~d~~laD~LtS~~~~l~D~~~~~c~~~~~~ 161 (345)
T PF03124_consen 82 YFVEYIPLLLLLILLLLLFFPFNIFYRSSRRWFLRTLKRILLAPFYPVRFRDFFLADQLTSLSKVLGDLEFTICYYFSGS 161 (345)
T ss_pred hhHHHhhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc
Confidence 01111 112232 1122999999999999999999999999999999866
Q ss_pred CCcCCCCCCCcchhhHHHHHHHhhhhHHHHHHHHHHhhhccCc-chhhhhHHHHHHHHHHHHHHhhhccCCch----HHH
Q 005159 508 FKRRSNNCNQSEIFQKFYVVIAIIPYWFRFLQCLRRLFEEQDR-VHGLNALKYSSTIVAVATRTIYSLRAGKT----LLI 582 (711)
Q Consensus 508 ~~~~~~~c~~~~~~~~~~~~~~~lP~~~R~~QClrry~dt~~~-~hl~Na~KY~~~~~~~~~~~~~~~~~~~~----~~~ 582 (711)
....+++|.+.+.+ ..++++++|++||++||+|||+||++. +||+||+||++++++++++..++..++.. +..
T Consensus 162 ~~~~~~~c~~~~~~--~~~~~~~lP~~iR~~QClrry~~~~~~~~hL~Na~KY~~~~~v~~~~~~~~~~~~~~~~~~~~~ 239 (345)
T PF03124_consen 162 FTSPSNQCGSSSWY--IDPIVASLPYWIRFLQCLRRYRDTGDRFPHLFNALKYSSSIPVIILSALYRFYPSSDSSIWLFI 239 (345)
T ss_pred ccCCCCcCccccHh--HHhHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccchhhHHH
Confidence 55567899987654 248999999999999999999999998 99999999999999888887776655433 678
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhccccCC--CCCcCCcccccccCcchhhHHHHHhHHHHHHHHHHhhcccCCccchhhHH
Q 005159 583 VAAASSGVATIANTYWDIAIDWGLLRRN--SRNPWLRDKLIVPIRSVYFIAMVLNILLRLAWMQTVLGFTEAPFLHRTAL 660 (711)
Q Consensus 583 ~~~~~~~i~s~ys~~WDv~mDWgL~~~~--~~~~~LR~~l~~~~~~~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~~~~~~ 660 (711)
+|++++++||+||++|||+|||||++++ +++++||++++|++|++||+||+.|+++||+|++++++.......+.+.+
T Consensus 240 ~w~~~~~i~s~Ys~~WDv~~DWgL~~~~~~~~~~~LR~~l~~~~~~~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~~~~~~ 319 (345)
T PF03124_consen 240 LWIIFALINSLYSFYWDVKMDWGLFQPKKKSKNWLLRRRLLYPRKWFYYFAIILNFILRFAWILTLSPPHFSHIDNSEIF 319 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCccccCCCCCccccccCCcchhhhHHHHHHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 8999999999999999999999999987 78999999999999999999999999999999999986431113357888
Q ss_pred HHHHHHHHHHhhhhhhheehhhhhhh
Q 005159 661 IAVVASLEIIRRGIWNFFRLENEHLN 686 (711)
Q Consensus 661 ~~~~~~lEi~RR~iWn~fRvEnEhi~ 686 (711)
.++++++||+||++||||||||||+|
T Consensus 320 ~~~~~~lEi~RR~iWnffRlE~Ehin 345 (345)
T PF03124_consen 320 IFILAILEIFRRFIWNFFRLENEHIN 345 (345)
T ss_pred HHHHHHHHHHHHHhhheeeeeHhhcC
Confidence 89999999999999999999999996
No 3
>COG5409 EXS domain-containing protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-56 Score=459.08 Aligned_cols=336 Identities=28% Similarity=0.420 Sum_probs=242.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccccCCCCcchh-hhhhhhHhhHHHHHHHHHHHHHHHHHHHhhcCCCceeeecccCCC
Q 005159 346 FLGTFFGFSLALIVAVVVAIHARNILESPGRTQY-MENIFPLYSFFGYIILHMLMYAGDIYFWKRYRVNYSFIFGLKQGT 424 (711)
Q Consensus 346 ~~Gl~~G~~l~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~pl~~~~~l~~l~~~l~~~n~~~w~~~~INY~~IF~~~~~~ 424 (711)
.+|+-.|.++++...+..+ ++.+++..+ ...++++|.++.+..+...++.+++|+|+|.+|||++||+++...
T Consensus 4 vv~~~~g~~l~l~~~i~~l------~~~~~~~~~~~~ill~lw~~~~l~~~~~~lf~v~~~i~~r~~inyr~i~~~e~~~ 77 (384)
T COG5409 4 VVGLEKGVSLSLGLYIQNL------LNVGEPQSFIVLILLALWGGWILVFFLAFLFDVSCYILTRTPINYRFIFLFEQLS 77 (384)
T ss_pred eeeeeccccccHHHHHHHh------eeCCchHHHHHHHHHHHHhHHHHHHHHHHHhcCceeeEEeccccchhhhhHhHhh
Confidence 3566667666655444333 233333333 456788999988888888999999999999999999999886643
Q ss_pred C----cchhhHH-------HHHHHHHHHHHHHHH-hhhcc-c--------------CCcc------cchhH--HHHHHhh
Q 005159 425 E----LGYREVL-------LLSSGLAVLTFSCAL-SNLDM-E--------------MDPR------TKSFR--ALTEVVP 469 (711)
Q Consensus 425 ~----l~~~~~~-------~~~~~~~~l~l~~~~-~~~~~-~--------------~~~~------~~~~~--~~~~~~p 469 (711)
. ...+... ...+++..++.++-+ .++.. . +.|. .+.|- .+.+++-
T Consensus 78 ~~a~~~~~dfh~~~i~~~~~~~slfiFl~~v~g~~~~l~~~~~~P~l~v~~vf~~ll~Pf~ii~y~sRr~Li~sliRv~l 157 (384)
T COG5409 78 STARNFNLDFHRIIIPFHFFTTSLFIFLNAVEGLKFILLFVYFLPLLQVGTVFWFLLKPFQIIYYWSRRYLIESLIRVFL 157 (384)
T ss_pred hhhcccchhhHHHhhhHHHHHHHHHHHHHHhhccccceehhhhccHHHHHHHHHHhhcccceeeecchhhHHHHHHHHHH
Confidence 2 2222111 111111111111100 00000 0 0010 01110 1122222
Q ss_pred ccceeeecCceehhHhhhhHHHhhhchhheeeeeecCCCCcCCCCCCCcchhhHHHHHHHhhhhHHHHHHHHHHhhhccC
Q 005159 470 LGLLIVTLPDFFLADQLTSQVQALRSLEFYVCYYGWGDFKRRSNNCNQSEIFQKFYVVIAIIPYWFRFLQCLRRLFEEQD 549 (711)
Q Consensus 470 l~l~~V~F~dfflaD~ltSl~~~l~d~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~~~~~lP~~~R~~QClrry~dt~~ 549 (711)
.+...|+|+||++||++||++++++|+..++|+|..... .+ -|.+++.. +.++++++|.++|++||+|||+|+++
T Consensus 158 ~~~~~v~f~dF~f~di~~SlTya~gdi~~FfCv~~~~~~--~p-Lc~sshs~--~~g~~~~lP~ivR~lQCLRry~ds~~ 232 (384)
T COG5409 158 FGYSLVRFTDFFFGDILISLTYALGDIYIFFCVYSLLFR--EP-LCKSSHSD--LSGLAALLPVIVRFLQCLRRYRDSLH 232 (384)
T ss_pred hccceeeeeeeehhhHHHHHHHhhhhhhhHHHHHhhhcc--cc-ccccCCcc--hHhHHHhhHHHHHHHHHHHHHHhhhh
Confidence 333449999999999999999999999999999974221 12 58877653 46789999999999999999999987
Q ss_pred -cchhhhhHHHHHHHHHHHHHHhhhccCC-chHHHHHHHHHhhhhHHHHHHHHHhhhccccCCCCC-cCCcccccccCcc
Q 005159 550 -RVHGLNALKYSSTIVAVATRTIYSLRAG-KTLLIVAAASSGVATIANTYWDIAIDWGLLRRNSRN-PWLRDKLIVPIRS 626 (711)
Q Consensus 550 -~~hl~Na~KY~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~s~ys~~WDv~mDWgL~~~~~~~-~~LR~~l~~~~~~ 626 (711)
.|||.||+||++++++.....+|+..++ ...+.++++++.+||+||+.|||.|||++..+.++. +-.|+..+++
T Consensus 233 ~fphLlNALKYs~~i~v~~~~~~~r~~~~~~~l~~l~~~~a~lnS~yT~~WDV~mDW~l~~~~~~~~~~kr~~~~l~--- 309 (384)
T COG5409 233 EFPHLLNALKYSLNIPVLFCLWLYRVYEGEERLFHLQIWFALLNSIYTSFWDVFMDWSLDSLTSLRSWSKRAVTLLK--- 309 (384)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHhccCcceeehHHHHHHHHHHHHHHhHHhheeeeecccccchhccccchhHHH---
Confidence 5999999999999988888888888773 456678888999999999999999999998776544 5677776654
Q ss_pred hhhHHHHHhHHHHHHHHHHhhcccCCccchhh-HHHHHHHHHHHHhhhhhhheehhhhhhhccCCceeccccC
Q 005159 627 VYFIAMVLNILLRLAWMQTVLGFTEAPFLHRT-ALIAVVASLEIIRRGIWNFFRLENEHLNNVGKYRAFKSVP 698 (711)
Q Consensus 627 ~Yy~ai~~n~ilRf~W~~~~~~~~~~~~~~~~-~~~~~~~~lEi~RR~iWn~fRvEnEhi~N~~~~ra~~~ip 698 (711)
||+||++|+++|++|+++..+.. +..|.. ...++++++||+|||+|++||||+||.+|+..+|+.++.+
T Consensus 310 -y~~a~~inFllR~~Wi~~~~~~~--~~~~~~~~~~F~m~~lEi~RR~vW~~FrveaE~~~n~~~~~~~~~~~ 379 (384)
T COG5409 310 -YHIAMIINFLLRFSWIVYYLPPN--HIQHSADIFIFIMQLLEILRRFVWVFFRVEAEHSINFASFRAAGELK 379 (384)
T ss_pred -HHHHHHHHHHHHHHHHHhhcchh--hhhhhhhhHHHHHHHHHHHHhheeeEEEeehHHHhhHHHhhhcccCC
Confidence 99999999999999999887543 334433 3338899999999999999999999999999999999998
No 4
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=99.97 E-value=3.4e-31 Score=277.50 Aligned_cols=269 Identities=29% Similarity=0.376 Sum_probs=142.1
Q ss_pred CcchhHHhhhcchhHHHhcCChhhHHHHHHHHhhhhhcccCCCCcccccccccccccchhhhcccccccccccCCCCCCC
Q 005159 1 MKFGKEFEAQLVQEWREAYMDYNYLKTILKEILHFKQKHTASPMTATTKEGRSLKRKVSFYRAFSGLTNKYRSYSPRKYR 80 (711)
Q Consensus 1 MKFgk~L~~~~vPEWr~~YidYk~LKk~IK~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (711)
|||||+|+.++||||+++|||||.|||+||+++.............. ......+ ...+... + ......
T Consensus 1 MKFgk~L~~~~vpEW~~~YidYk~LKk~ik~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~-~----~~~~~~ 68 (275)
T PF03105_consen 1 MKFGKQLQENAVPEWRDKYIDYKQLKKLIKRIQNEKESLGLSAETLS-----SISISSS--SSSSSRS-S----SNSFES 68 (275)
T ss_pred CCchHHHHHhcCHHHHHHhCCHHHHHHHHHHHHhhhhcccccccccc-----hhhhhhh--hhccccc-c----cccccc
Confidence 99999999999999999999999999999999886554321111000 0000000 0000000 0 000000
Q ss_pred CCcchhhhhccccCCCchhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005159 81 HEEDEAILVSSTVDEGDQYQTMFLMSSDEGGQFEVVFFRRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALIALRIKI 160 (711)
Q Consensus 81 ~~e~~~~~~~~~~~dg~~~~~~~~~~~e~~~e~e~~Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~~~r~~~ 160 (711)
........ ........ ........+.+|+..|+.||+||+.||.++++|+.++++.|+.|+..+...+...
T Consensus 69 ~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~~~~~~~ 139 (275)
T PF03105_consen 69 TSPSSSNT----SPSSSNSE-----QNEDNEESEEEFFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELREQRSKS 139 (275)
T ss_pred cccccccc----cccccccc-----hhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 00000000 00000000 0011134789999999999999999999999999999999999999997764321
Q ss_pred CCcchhhchhhhhHhhhhhcccCCCCCCCcccc-c-CCcccch--hhhhhhcccCCCCCCcccc-ccccccccccccccc
Q 005159 161 DDPIKQQGQLHMEKIQELEMSSEGSSDGKTRAD-M-NGFSRAS--LEVLDHVKLNVEPETPVSI-LKGVLMTSKSDRSFS 235 (711)
Q Consensus 161 ~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~~~-~-~~~~~~~--~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~f~ 235 (711)
........ ....... ... ..++++.....+ . ....... .........+.....+... ............ ..
T Consensus 140 ~~~~~~~~-~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 215 (275)
T PF03105_consen 140 SDKYNWNQ-SSQLSSS-SNI-FSSSSSASAGSSNSSSASRRSQRFSSESSKQSSNSESDAESDNNRGDRSSDKPFLS-SS 215 (275)
T ss_pred cccccccc-chhhccc-ccc-ccCccccccCCccccccccccccchhhhhhccCCCCcccccccccccccccccccc-cc
Confidence 10000000 0000000 000 000000000000 0 0000000 0000000000000000000 000000000111 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHhhhhcCCCcchHHHHHHc
Q 005159 236 RNELKKAEALMTRAFVEFYQKLRLLKSYCFLNQLAFSKIMKKYDKITSRNASKAYLQMV 294 (711)
Q Consensus 236 ~~~~~~a~~~Lk~a~~e~y~~l~~L~~y~~LN~tgF~KIlKK~DK~~~~~~~~~y~~~v 294 (711)
...+.+++..|++++.|+|++|.+|++|++||+|||+||||||||++++++++.||+.|
T Consensus 216 ~~~~~~~~~~l~~~~~e~y~~l~~Lk~f~~LN~taf~KIlKK~DK~~~~~~~~~y~~~v 274 (275)
T PF03105_consen 216 QKSLKKARKQLKKAFIELYRELELLKSFVELNRTAFRKILKKYDKVTGTSLSDDYMEEV 274 (275)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhhcc
Confidence 45677788999999999999999999999999999999999999999999999999864
No 5
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.6e-31 Score=272.77 Aligned_cols=177 Identities=27% Similarity=0.407 Sum_probs=149.8
Q ss_pred CcchhHHhhhcchhHHHhcCChhhHHHHHHHHhhhhhcccCCCCcccccccccccccchhhhcccccccccccCCCCCCC
Q 005159 1 MKFGKEFEAQLVQEWREAYMDYNYLKTILKEILHFKQKHTASPMTATTKEGRSLKRKVSFYRAFSGLTNKYRSYSPRKYR 80 (711)
Q Consensus 1 MKFgk~L~~~~vPEWr~~YidYk~LKk~IK~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (711)
|||||+|++...|||+++|||||.|||.||+....... +.
T Consensus 1 MkFGk~L~~~~l~ew~~~yinYk~LKK~lK~~~~~~~~---------------------------------------~~- 40 (310)
T KOG1161|consen 1 MKFGKYLKEELLPEWKDKYINYKELKKLLKQYSIQTAD---------------------------------------SS- 40 (310)
T ss_pred CchhHHHHHhhhhhHhhhhcCHHHHHHHHHHhcccccc---------------------------------------CC-
Confidence 99999999999999999999999999999987431100 00
Q ss_pred CCcchhhhhccccCCCchhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005159 81 HEEDEAILVSSTVDEGDQYQTMFLMSSDEGGQFEVVFFRRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALIALRIKI 160 (711)
Q Consensus 81 ~~e~~~~~~~~~~~dg~~~~~~~~~~~e~~~e~e~~Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~~~r~~~ 160 (711)
. ....|..|++.||+||+||+.|+.+|++|+.+|+++|++|.++ ..
T Consensus 41 ~----------------------------~~~~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~--~~---- 86 (310)
T KOG1161|consen 41 P----------------------------DSRDESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDA--LS---- 86 (310)
T ss_pred c----------------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cc----
Confidence 0 0125889999999999999999999999999999999998865 10
Q ss_pred CCcchhhchhhhhHhhhhhcccCCCCCCCcccccCCcccchhhhhhhcccCCCCCCcccccccccccccccccccHHHHH
Q 005159 161 DDPIKQQGQLHMEKIQELEMSSEGSSDGKTRADMNGFSRASLEVLDHVKLNVEPETPVSILKGVLMTSKSDRSFSRNELK 240 (711)
Q Consensus 161 ~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~~~~~~ 240 (711)
.++ | . ..+.
T Consensus 87 -----------------~~~------------------------------------~------------~-----~~~~- 95 (310)
T KOG1161|consen 87 -----------------LEP------------------------------------P------------S-----AEEM- 95 (310)
T ss_pred -----------------cCC------------------------------------c------------c-----hhHH-
Confidence 000 0 0 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHhhhhcCCCcchHHHHHHcccCCCCChhHHHHHHHHHHHHHHHHh
Q 005159 241 KAEALMTRAFVEFYQKLRLLKSYCFLNQLAFSKIMKKYDKITSRNASKAYLQMVDNSNLGSSDEVTKLMERVEATFVKHF 320 (711)
Q Consensus 241 ~a~~~Lk~a~~e~y~~l~~L~~y~~LN~tgF~KIlKK~DK~~~~~~~~~y~~~v~~~~f~~~~~l~~l~~~ve~ly~~~f 320 (711)
..|++++.++..++.+|.+|++||+|||+||||||||.+|..+.+.|..+|..+||++.+.+++|+.+++.+|+..+
T Consensus 96 ---~~lr~~l~~~~~em~~L~~fs~LN~tGf~KILKK~DKrtg~~l~~~f~~~l~~~Pf~~~e~~~~Lv~e~~~l~~~l~ 172 (310)
T KOG1161|consen 96 ---KELREELVDFHGEMVLLENFSRLNYTGFAKILKKHDKRTGYRLRPYFQVRLLHQPFFTTEQLFRLVYEISILLDLLR 172 (310)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccccccccHHHHHHHhCCCchhhhHHHHHHHHHHHHHHhc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCh
Q 005159 321 ANGNH 325 (711)
Q Consensus 321 ~~g~~ 325 (711)
+.++.
T Consensus 173 ~~~~~ 177 (310)
T KOG1161|consen 173 PSNRN 177 (310)
T ss_pred ccccc
Confidence 87754
No 6
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.6e-23 Score=219.65 Aligned_cols=168 Identities=24% Similarity=0.343 Sum_probs=139.3
Q ss_pred CcchhHHhhhcchhHHHhcCChhhHHHHHHHHhhhhhcccCCCCcccccccccccccchhhhcccccccccccCCCCCCC
Q 005159 1 MKFGKEFEAQLVQEWREAYMDYNYLKTILKEILHFKQKHTASPMTATTKEGRSLKRKVSFYRAFSGLTNKYRSYSPRKYR 80 (711)
Q Consensus 1 MKFgk~L~~~~vPEWr~~YidYk~LKk~IK~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (711)
|+||+.|+++.+|+|++.||||..|||.+|+-.. .++|
T Consensus 1 M~Fg~~L~~~ly~p~k~~YinYe~LK~~lK~~~~------------------------------------------~~~w 38 (509)
T COG5036 1 MRFGKKLKNNLYPPYKYSYINYENLKKLLKESEE------------------------------------------EGSW 38 (509)
T ss_pred CchhHHHHhccCcccccccCCHHHHHHHHhhccc------------------------------------------cCCC
Confidence 9999999999999999999999999999998211 0113
Q ss_pred CCcchhhhhccccCCCchhhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005159 81 HEEDEAILVSSTVDEGDQYQTMFLMSSDEGGQFEVVFFRRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALIALRIKI 160 (711)
Q Consensus 81 ~~e~~~~~~~~~~~dg~~~~~~~~~~~e~~~e~e~~Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~~~r~~~ 160 (711)
+ .++|+.|++.||.||+||..|+..|.+|+.+|++.|++|..+....
T Consensus 39 ~-----------------------------e~dEsdFVe~Ld~eLeKVY~F~~~k~~ev~erl~~leeq~~~~i~~---- 85 (509)
T COG5036 39 S-----------------------------ESDESDFVEELDKELEKVYGFQLSKYSEVMERLRTLEEQTDEAIQE---- 85 (509)
T ss_pred c-----------------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhc----
Confidence 3 1468999999999999999999999999999999999998733221
Q ss_pred CCcchhhchhhhhHhhhhhcccCCCCCCCcccccCCcccchhhhhhhcccCCCCCCcccccccccccccccccccHHHHH
Q 005159 161 DDPIKQQGQLHMEKIQELEMSSEGSSDGKTRADMNGFSRASLEVLDHVKLNVEPETPVSILKGVLMTSKSDRSFSRNELK 240 (711)
Q Consensus 161 ~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~~~~~~ 240 (711)
.++ + .+
T Consensus 86 -----------------~ds-----~----------------------------------------------~~------ 91 (509)
T COG5036 86 -----------------LDS-----D----------------------------------------------NF------ 91 (509)
T ss_pred -----------------ccC-----C----------------------------------------------cc------
Confidence 000 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHhhhhcCCCcchHHHHHHcccCCCCChhHHHHHHHHHHHHHHHHh
Q 005159 241 KAEALMTRAFVEFYQKLRLLKSYCFLNQLAFSKIMKKYDKITSRNASKAYLQMVDNSNLGSSDEVTKLMERVEATFVKHF 320 (711)
Q Consensus 241 ~a~~~Lk~a~~e~y~~l~~L~~y~~LN~tgF~KIlKK~DK~~~~~~~~~y~~~v~~~~f~~~~~l~~l~~~ve~ly~~~f 320 (711)
.+.+.|...+.+.|.+|..||+|||.||+|||||.+|+.+.+.|-.++...|| .++.++.|+.++..||....
T Consensus 92 ------~~~LeE~L~~v~~l~kF~RLN~tGF~KIvKKHDK~~~y~lkpvfqvrLk~~p~-~se~yd~Ll~kis~LY~~lR 164 (509)
T COG5036 92 ------PKILEEELDTVHDLAKFSRLNFTGFKKIVKKHDKHTGYSLKPVFQVRLKAKPF-FSEQYDPLLYKISSLYNILR 164 (509)
T ss_pred ------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCCCCceechhHHHHhccCCc-chhhhcHHHHHHHHHHHHHH
Confidence 01234444588999999999999999999999999999999999888999998 46899999999999999998
Q ss_pred cCCC
Q 005159 321 ANGN 324 (711)
Q Consensus 321 ~~g~ 324 (711)
++++
T Consensus 165 ~~~~ 168 (509)
T COG5036 165 SSLS 168 (509)
T ss_pred hcCC
Confidence 8876
No 7
>COG5408 SPX domain-containing protein [Signal transduction mechanisms]
Probab=99.79 E-value=1.2e-18 Score=179.89 Aligned_cols=54 Identities=37% Similarity=0.586 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHhhhhcCCCcchHHHHHHc
Q 005159 241 KAEALMTRAFVEFYQKLRLLKSYCFLNQLAFSKIMKKYDKITSRNASKAYLQMV 294 (711)
Q Consensus 241 ~a~~~Lk~a~~e~y~~l~~L~~y~~LN~tgF~KIlKK~DK~~~~~~~~~y~~~v 294 (711)
..+..|+++++++|..|+.|++|++||+|||+||+|||||.+++++...||+..
T Consensus 238 q~R~~lkk~ii~~y~~l~~lksf~eLN~tGf~Ki~KK~DK~l~~~~~~~~~s~~ 291 (296)
T COG5408 238 QKRSLLKKRIIELYIQLHQLKSFIELNYTGFSKITKKYDKTLHQNLRHEYMSRS 291 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999999999863
No 8
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.82 E-value=4.6e+02 Score=30.54 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=25.4
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005159 120 RLDDEFNKV---VSFYKKKVEEAVAEADELSKQMNALIA 155 (711)
Q Consensus 120 ~Ld~EL~KV---~~Fy~~k~~E~~~r~~~L~~ql~~l~~ 155 (711)
.+++|.++| ..|-.++.+|+.++-+.|+..+++|..
T Consensus 606 ~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~ 644 (741)
T KOG4460|consen 606 YCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLH 644 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 444555554 457777888888888888888887754
No 9
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=39.52 E-value=2.2e+02 Score=27.48 Aligned_cols=12 Identities=8% Similarity=-0.059 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 005159 347 LGTFFGFSLALI 358 (711)
Q Consensus 347 ~Gl~~G~~l~l~ 358 (711)
-|+++||.++-+
T Consensus 36 P~L~~~M~~~y~ 47 (155)
T PF10777_consen 36 PYLCLAMYAAYL 47 (155)
T ss_pred cHHHHHHHHHHH
Confidence 377777665443
No 10
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=32.42 E-value=5.8e+02 Score=26.37 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005159 123 DEFNKVVSFYKKKVEEAVAEADELSKQMNAL 153 (711)
Q Consensus 123 ~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l 153 (711)
.||++=++|-.....|+.++.+..+++.+.+
T Consensus 46 ~eLk~qnkli~K~l~ei~~~qd~reK~~~~I 76 (230)
T PF03904_consen 46 QELKRQNKLIIKYLSEIEEKQDIREKNLKEI 76 (230)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777766666655
No 11
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=30.89 E-value=1.4e+02 Score=25.84 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005159 119 RRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALIAL 156 (711)
Q Consensus 119 ~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~~~ 156 (711)
+.+++|++|+. .|.+|++.|+..|+.|...+.+.
T Consensus 4 eKi~~eieK~k----~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 4 EKIRAEIEKTK----EKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999986 79999999999999998877654
No 12
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=21.04 E-value=8.3e+02 Score=24.28 Aligned_cols=73 Identities=11% Similarity=0.203 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHhhhhcCCCcchHHHHH-HcccCCCCChhHHHHHHHHHHHHHHHHhc
Q 005159 245 LMTRAFVEFYQKLRLLKSYCFLNQLAFSKIMKKYDKITSRNASKAYLQ-MVDNSNLGSSDEVTKLMERVEATFVKHFA 321 (711)
Q Consensus 245 ~Lk~a~~e~y~~l~~L~~y~~LN~tgF~KIlKK~DK~~~~~~~~~y~~-~v~~~~f~~~~~l~~l~~~ve~ly~~~f~ 321 (711)
.+-+.+.+-=+.+...++|..-=.-+-.|++.||......+....=.. ...+ ..+.++.+....++.|.+.+.
T Consensus 112 ~I~~~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~~~~~~~~~~~~l~e----~~~~L~~l~~~f~~~~~~l~~ 185 (199)
T PF10112_consen 112 RIFKYVEKDPERLTQARKFLYYYLPTAVKLLEKYAELESQPVKSEEIKQSLEE----IEETLDTLNQAFEKDLDKLLE 185 (199)
T ss_pred HHHHHHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566677777777777788899999977654432221111 0100 124566666666666666654
No 13
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=20.98 E-value=1.6e+02 Score=26.68 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005159 112 QFEVVFFRRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALIAL 156 (711)
Q Consensus 112 e~e~~Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~~~ 156 (711)
+-+..--+.+..=+++.+.|-+...+++.+|++.|+.|+..|.+.
T Consensus 61 e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 61 ELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred hHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566667777778888889999999999999999998764
Done!