Query 005159
Match_columns 711
No_of_seqs 270 out of 1101
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:11:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2akf_A Coronin-1A; coiled coil 47.9 45 0.0015 21.9 5.0 28 120-151 3-30 (32)
2 3pp5_A BRK1, protein brick1; t 40.3 1.1E+02 0.0036 24.8 7.3 43 113-155 17-59 (73)
3 3p8c_E Probable protein brick1 38.7 1.1E+02 0.0039 24.8 7.3 43 113-155 17-59 (75)
4 3t98_B Nucleoporin NUP58/NUP45 30.2 2.5E+02 0.0085 23.7 10.8 28 129-156 7-34 (93)
5 2l2r_A Antimicrobial peptide e 28.4 16 0.00056 24.9 0.6 10 538-547 9-18 (37)
6 4ev6_A Magnesium transport pro 26.2 5.4E+02 0.019 26.3 13.9 31 250-280 199-229 (339)
7 2iub_A CORA, divalent cation t 22.3 5.5E+02 0.019 26.6 11.6 28 249-276 222-249 (363)
8 2l5g_B Putative uncharacterize 22.2 1.5E+02 0.0051 21.3 4.6 27 117-147 10-36 (42)
9 2pnv_A Small conductance calci 17.7 1.5E+02 0.0052 21.4 4.0 23 133-155 15-37 (43)
10 2p2u_A HOST-nuclease inhibitor 14.6 3E+02 0.01 25.7 6.5 43 114-156 32-74 (171)
No 1
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=47.89 E-value=45 Score=21.91 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005159 120 RLDDEFNKVVSFYKKKVEEAVAEADELSKQMN 151 (711)
Q Consensus 120 ~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~ 151 (711)
.|++|+.|++.-.+ ++++|++.|++.++
T Consensus 3 rlee~~r~l~~ivq----~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQ----KLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 57788888876654 56677777777664
No 2
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=40.28 E-value=1.1e+02 Score=24.84 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005159 113 FEVVFFRRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALIA 155 (711)
Q Consensus 113 ~e~~Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~~ 155 (711)
...+|.+.+...+.|+.+|-+.=..-+..|+..+..+++.+..
T Consensus 17 ~nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~ 59 (73)
T 3pp5_A 17 EQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDR 59 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3668999999999999999887777777777777766666543
No 3
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=38.72 E-value=1.1e+02 Score=24.78 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005159 113 FEVVFFRRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALIA 155 (711)
Q Consensus 113 ~e~~Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~~ 155 (711)
...+|.+.+..-+.++.+|-..=..-+..|+..|+.++..+..
T Consensus 17 ~nRe~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr 59 (75)
T 3p8c_E 17 ANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALER 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999877777777777777766666643
No 4
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=30.21 E-value=2.5e+02 Score=23.67 Aligned_cols=28 Identities=11% Similarity=0.264 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005159 129 VSFYKKKVEEAVAEADELSKQMNALIAL 156 (711)
Q Consensus 129 ~~Fy~~k~~E~~~r~~~L~~ql~~l~~~ 156 (711)
..||.+...++.+|+..++.+++.+..+
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~ 34 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENH 34 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577778888888888888888877554
No 5
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=28.38 E-value=16 Score=24.87 Aligned_cols=10 Identities=50% Similarity=0.826 Sum_probs=8.6
Q ss_pred HHHHHHhhhc
Q 005159 538 LQCLRRLFEE 547 (711)
Q Consensus 538 ~QClrry~dt 547 (711)
.||+|||.|.
T Consensus 9 rqC~Rr~ede 18 (37)
T 2l2r_A 9 SQCMRRHEDE 18 (37)
T ss_dssp HHHHHHTSSC
T ss_pred HHHHHhccCC
Confidence 5999999885
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=26.19 E-value=5.4e+02 Score=26.31 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHHhhhh
Q 005159 250 FVEFYQKLRLLKSYCFLNQLAFSKIMKKYDK 280 (711)
Q Consensus 250 ~~e~y~~l~~L~~y~~LN~tgF~KIlKK~DK 280 (711)
+.++-+++..|++...-|...+.++.+....
T Consensus 199 l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~ 229 (339)
T 4ev6_A 199 ILGLRKTLVYFHKSLIANRDVLVLLKRKYLP 229 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCBT
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhcccc
Confidence 4455556666677766777777777665433
No 7
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=22.26 E-value=5.5e+02 Score=26.59 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHH
Q 005159 249 AFVEFYQKLRLLKSYCFLNQLAFSKIMK 276 (711)
Q Consensus 249 a~~e~y~~l~~L~~y~~LN~tgF~KIlK 276 (711)
.+.++-+++..|++...-+...+.++.+
T Consensus 222 ~l~~lrr~l~~lrr~l~p~~~vl~~L~~ 249 (363)
T 2iub_A 222 RTHQLKRNLVELRKTIWPLREVLSSLYR 249 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777888888888888888875
No 8
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.18 E-value=1.5e+02 Score=21.28 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005159 117 FFRRLDDEFNKVVSFYKKKVEEAVAEADELS 147 (711)
Q Consensus 117 Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~ 147 (711)
=...+|+|++|+.. +.++++.|...|+
T Consensus 10 kI~kVdrEI~Kte~----kI~~lqkKlkeLe 36 (42)
T 2l5g_B 10 NMDRVDREITMVEQ----QISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 34577788887753 4455555544444
No 9
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=17.71 E-value=1.5e+02 Score=21.40 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005159 133 KKKVEEAVAEADELSKQMNALIA 155 (711)
Q Consensus 133 ~~k~~E~~~r~~~L~~ql~~l~~ 155 (711)
.+...++.+|+..|+.+++.+..
T Consensus 15 ~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 15 NERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 34666777778888877777654
No 10
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=14.55 E-value=3e+02 Score=25.70 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005159 114 EVVFFRRLDDEFNKVVSFYKKKVEEAVAEADELSKQMNALIAL 156 (711)
Q Consensus 114 e~~Ff~~Ld~EL~KV~~Fy~~k~~E~~~r~~~L~~ql~~l~~~ 156 (711)
..+--..++.|+++|...|....+.+..+++.|+..+..+...
T Consensus 32 ~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~ 74 (171)
T 2p2u_A 32 VGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFATL 74 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445568899999999999999999999999999999998775
Done!