Query 005159
Match_columns 711
No_of_seqs 270 out of 1101
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 17:12:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005159.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005159hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nsza1 a.118.1.14 (A:322-450) 9.2 83 0.0061 25.8 2.8 31 306-336 4-34 (129)
2 d2e74h1 f.23.27.1 (H:3-29) Pet 8.9 1.7E+02 0.012 16.9 3.1 17 395-411 10-26 (27)
3 d1tuba2 d.79.2.1 (A:246-440) T 7.1 86 0.0062 27.6 2.0 29 271-299 143-173 (195)
4 d1q90n_ f.23.27.1 (N:) PetN su 7.0 1.8E+02 0.013 17.4 2.8 18 395-412 14-31 (31)
5 d1khba1 c.91.1.1 (A:260-622) C 5.6 2.2E+02 0.016 27.5 4.3 33 119-151 324-361 (363)
6 d1tubb2 d.79.2.1 (B:246-437) T 5.2 1.5E+02 0.011 25.5 2.6 29 271-299 135-165 (184)
7 d1nu9c1 a.8.6.1 (C:1-145) Stap 5.1 5.2E+02 0.038 21.2 5.7 31 232-262 111-141 (145)
8 d1sfka_ a.190.1.1 (A:) Flavivi 5.1 1.5E+02 0.011 21.9 2.0 36 248-283 24-65 (73)
9 d1ug3a1 a.118.1.14 (A:1235-142 4.9 2.3E+02 0.017 24.4 3.6 32 306-337 7-38 (193)
10 d3pvia_ c.52.1.6 (A:) Restrict 4.7 3.4E+02 0.025 22.1 4.2 30 534-563 8-42 (156)
No 1
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.23 E-value=83 Score=25.82 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhcCCChHhHhhhcCCcc
Q 005159 306 TKLMERVEATFVKHFANGNHRKGMHTLRPKA 336 (711)
Q Consensus 306 ~~l~~~ve~ly~~~f~~g~~~~a~~~Lr~~~ 336 (711)
+.|.++++.+...+|..||.++|...++...
T Consensus 4 ~~l~kk~~~ll~EY~~~~D~~Ea~~~l~eL~ 34 (129)
T d2nsza1 4 NHLVKEIDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4678899999999999999999888777644
No 2
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.94 E-value=1.7e+02 Score=16.92 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhcC
Q 005159 395 LHMLMYAGDIYFWKRYR 411 (711)
Q Consensus 395 l~~~l~~~n~~~w~~~~ 411 (711)
|..+-|++.+-+|-+.|
T Consensus 10 lvvftwsiamvvwgrng 26 (27)
T d2e74h1 10 LVVFTWSIAMVVWGRNG 26 (27)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHhhheeeeEEEccCC
Confidence 44566888888998876
No 3
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=7.13 E-value=86 Score=27.58 Aligned_cols=29 Identities=10% Similarity=0.371 Sum_probs=18.3
Q ss_pred HHHHHHhhhhcCCCc-chHHHHHH-cccCCC
Q 005159 271 FSKIMKKYDKITSRN-ASKAYLQM-VDNSNL 299 (711)
Q Consensus 271 F~KIlKK~DK~~~~~-~~~~y~~~-v~~~~f 299 (711)
|.+|++||||..... --+.|.+. ++..-|
T Consensus 143 f~~i~~~Fdkl~~rkAflh~Y~~egmee~eF 173 (195)
T d1tuba2 143 WARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 173 (195)
T ss_dssp HHHHHHHHHHHTTTTCCTTTGGGGSCCSSSS
T ss_pred HHHHHHHHHHHHhhchHHHHhcccCCcHHHH
Confidence 567789999987653 34566543 554434
No 4
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.97 E-value=1.8e+02 Score=17.41 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 005159 395 LHMLMYAGDIYFWKRYRV 412 (711)
Q Consensus 395 l~~~l~~~n~~~w~~~~I 412 (711)
+..+.|++.+-+|-+.|.
T Consensus 14 ~atfsfslslvvwgrsgl 31 (31)
T d1q90n_ 14 CVMFSFSLSLVVWGRSGL 31 (31)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHhheeeEEEEEEeccCC
Confidence 445678888889988763
No 5
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.59 E-value=2.2e+02 Score=27.45 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q 005159 119 RRLDDEFNKVVSFYKKKVE-----EAVAEADELSKQMN 151 (711)
Q Consensus 119 ~~Ld~EL~KV~~Fy~~k~~-----E~~~r~~~L~~ql~ 151 (711)
+...+|++.+.++|.++.. |+.++++.|+++|+
T Consensus 324 ~~w~~E~~~i~~~f~~~~g~~LP~el~~eL~~Lk~RL~ 361 (363)
T d1khba1 324 EFWDKEVEDIEKYLVDQVNADLPCEIEREILALKQRIS 361 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 4567899999999976653 66666666666554
No 6
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}
Probab=5.23 E-value=1.5e+02 Score=25.51 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=19.4
Q ss_pred HHHHHHhhhhcCCCc-chHHHHHH-cccCCC
Q 005159 271 FSKIMKKYDKITSRN-ASKAYLQM-VDNSNL 299 (711)
Q Consensus 271 F~KIlKK~DK~~~~~-~~~~y~~~-v~~~~f 299 (711)
|.+|++||||....+ --+.|.+. ++..-|
T Consensus 135 f~~~~~~fd~l~~kkAflh~Y~~egmee~eF 165 (184)
T d1tubb2 135 FKRISEQFTAMFRRKAFLHWYTGEGMDEMEF 165 (184)
T ss_dssp HHTHHHHHHHTCCCCCCCHHHHTSSCCSTTT
T ss_pred HHHHHHHHHHHHhcChhHHhhccCCCcHHhH
Confidence 567889999998754 46678753 544333
No 7
>d1nu9c1 a.8.6.1 (C:1-145) Staphylocoagulase {Staphylococcus aureus [TaxId: 1280]}
Probab=5.13 E-value=5.2e+02 Score=21.17 Aligned_cols=31 Identities=10% Similarity=0.298 Sum_probs=25.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005159 232 RSFSRNELKKAEALMTRAFVEFYQKLRLLKS 262 (711)
Q Consensus 232 ~~f~~~~~~~a~~~Lk~a~~e~y~~l~~L~~ 262 (711)
..++.+++......|+.|+-+|..+...+++
T Consensus 111 ~~LTm~EyN~I~~sLk~Ave~F~kEVk~Iq~ 141 (145)
T d1nu9c1 111 EDLTMREYNELTESLKSAVKDFEKDVEIIEN 141 (145)
T ss_dssp CCCBHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888889999999999999988775
No 8
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=5.08 E-value=1.5e+02 Score=21.89 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=29.0
Q ss_pred HHHHHHHHH------HHHHHhHHHhhHHHHHHHHHhhhhcCC
Q 005159 248 RAFVEFYQK------LRLLKSYCFLNQLAFSKIMKKYDKITS 283 (711)
Q Consensus 248 ~a~~e~y~~------l~~L~~y~~LN~tgF~KIlKK~DK~~~ 283 (711)
-|+..|++- ..+|+.+..+|...-.|+||.|.|-.|
T Consensus 24 LA~laFfRFtAi~Pt~~ll~RW~~v~K~~A~k~L~~FKKeig 65 (73)
T d1sfka_ 24 LALLAFFRFTAIAPTRAVLDRWRSVNKQTAMKHLLSFKKELG 65 (73)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 455555554 478999999999999999999998665
No 9
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.89 E-value=2.3e+02 Score=24.45 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhcCCChHhHhhhcCCccc
Q 005159 306 TKLMERVEATFVKHFANGNHRKGMHTLRPKAK 337 (711)
Q Consensus 306 ~~l~~~ve~ly~~~f~~g~~~~a~~~Lr~~~~ 337 (711)
+++.++++.+...+|..||.++|...++....
T Consensus 7 ee~~kk~~~il~Ey~~~~D~~Ea~~~l~el~~ 38 (193)
T d1ug3a1 7 EELEKKSKAIIEEYLHLNDMKEAVQCVQELAS 38 (193)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 45667888999999999999999998887543
No 10
>d3pvia_ c.52.1.6 (A:) Restriction endonuclease PvuII {Proteus vulgaris [TaxId: 585]}
Probab=4.75 E-value=3.4e+02 Score=22.08 Aligned_cols=30 Identities=7% Similarity=0.009 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhhccC-----cchhhhhHHHHHHH
Q 005159 534 WFRFLQCLRRLFEEQD-----RVHGLNALKYSSTI 563 (711)
Q Consensus 534 ~~R~~QClrry~dt~~-----~~hl~Na~KY~~~~ 563 (711)
+.|++-|+|+|.+--. -.--.|.|||+--+
T Consensus 8 ~~~l~p~i~eyq~la~k~~INDiFQdNGGKlLQvl 42 (156)
T d3pvia_ 8 LLELWPHIQEYQDLALKHGINDIFQGNGGKLLQVL 42 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCTTSTTHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHcCchhhhhcCChhhhHHH
Confidence 3588889999987421 13457999997654
Done!