BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005160
(711 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/335 (33%), Positives = 165/335 (49%), Gaps = 33/335 (9%)
Query: 23 TLSSVTYD--SKALIINGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWN 80
+LS T++ ++NG+ ++ + IHYPR E WE I+ K G + I YVFWN
Sbjct: 2 SLSEGTFEVGKNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWN 61
Query: 81 VHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISF 140
HEP G Y+F G+ D+ F +L Q+ G YV +R GPY+CAEW GG P WL + I
Sbjct: 62 FHEPEEGRYDFAGQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKL 121
Query: 141 RTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEFGSAG--EAY 198
R + + ++ F ++ + D ++ S+GG II Q+ENEY G+ G + Y
Sbjct: 122 REQDPYYXERVKLFLNEVGKQLADLQI--SKGGNIIXVQVENEY-------GAFGIDKPY 172
Query: 199 MKWAAEMAVELN-TEVPWVMCK-----EEDAPDPVINTCN-------GFYCHSFSPNKPS 245
+ + + T VP C E +A D ++ T N +P
Sbjct: 173 ISEIRDXVKQAGFTGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPD 232
Query: 246 KPKMWTEAWTGWFSDFGGQNYQRPVEDLAFAVARFIQKGGSFVNYYMYHGGTNFGRTAGG 305
P +E W+GWF +G ++ R E+L + + SF + Y HGGT+FG G
Sbjct: 233 TPLXCSEFWSGWFDHWGAKHETRSAEELVKGXKEXLDRNISF-SLYXTHGGTSFGHWGGA 291
Query: 306 PF-----ITTSYDYDAPIDEYGLIREPKYGHLKKL 335
F TSYDYDAPI+E G + PKY ++ L
Sbjct: 292 NFPNFSPTCTSYDYDAPINESGKVT-PKYLEVRNL 325
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 30/100 (30%)
Query: 594 EHKKQQPLTWYKAYFDAPE-GDEPLAMDMSSMNKGQVLINGQNIGRYWTAIANGACRNCN 652
E+ + QP +Y++ F+ E GD ++ + +KG V +NG IGRYW
Sbjct: 502 ENAENQP-AYYRSTFNLNELGD--TFLNXXNWSKGXVWVNGHAIGRYWEI---------- 548
Query: 653 YTGTYRPTNCGFDCGKPSQQWYHVPRSWLKPRQNLLIVFE 692
QQ +VP WLK +N +I+ +
Sbjct: 549 ----------------GPQQTLYVPGCWLKKGENEIIILD 572
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 160/341 (46%), Gaps = 30/341 (8%)
Query: 27 VTYDSKALIINGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSP 86
+ Y + + +GQ SGSIHY R W+ + K K GL+ I TYV WN HEP P
Sbjct: 11 IDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWP 70
Query: 87 GNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKP 146
G Y F +D+ F++L + GL V LR GPYICAEW GG P WL + I R+ +
Sbjct: 71 GQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPD 130
Query: 147 FKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEFGSAGEAYMKWAAE-M 205
+ A+ + VL+ K + L GGP+I Q+ENEY + + Y+++ +
Sbjct: 131 YLAAVDKWLG--VLLPKMKPLLYQNGGPVITVQVENEY----GSYFACDFDYLRFLQKRF 184
Query: 206 AVELNTEVPWVMCKEEDAPDPVIN--TCNGFYCH--------------SFSPNKPSKPKM 249
L +V V+ + A + G Y S +P P +
Sbjct: 185 RHHLGDDV--VLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLI 242
Query: 250 WTEAWTGWFSDFGGQNYQRPVEDLAFAVARFIQKGGSFVNYYMYHGGTNFG--RTAGGPF 307
+E +TGW +G + E +A ++ + +G S VN YM+ GGTNF A P+
Sbjct: 243 NSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGAS-VNLYMFIGGTNFAYWNGANSPY 301
Query: 308 IT--TSYDYDAPIDEYGLIREPKYGHLKKLHKAIKLCENAL 346
TSYDYDAP+ E G + E + + K K+ E +
Sbjct: 302 AAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPI 342
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 602 TWYKAYFDAPEGDEPLAMD----MSSMNKGQVLINGQNIGRYWTA 642
+Y F P G L D KGQV ING N+GRYW A
Sbjct: 527 AFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPA 571
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 182/404 (45%), Gaps = 48/404 (11%)
Query: 27 VTYDSKALIINGQRRILFSGSIH-YPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPS 85
VT+D ++ +NG+R ++FSG +H Y ++ + +K K G + + YV W + E +
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 86 PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNK 145
PG+Y+ EG +DL F ++AG+Y+ R GPYI AE + GGFP WL+ V GI RT ++
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGI-LRTSDE 124
Query: 146 PFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEF-GSAGEAYMKWAAE 204
+ A N+ I + ++ + GGPIIL Q ENEY + G +YM++ +
Sbjct: 125 AYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIED 182
Query: 205 MAVELNTEVPWVM----CKEEDAPDPVINTCN---------GFYCH-------------- 237
A + VP++ +AP + GF C
Sbjct: 183 HARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYF 242
Query: 238 --SFSPNKPSKPKMWTEAWTGWFSDFGGQNYQRPVEDLAFAVARFIQK-----GGSFVNY 290
S PS P E G F +GG + + L R K G +F+N
Sbjct: 243 HTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNL 302
Query: 291 YMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLIREPKYGHLKKLHKAIKLCENALLT-- 348
YM GGTN+G G P TSYDY + I E I KY LK L K+ L+
Sbjct: 303 YMIFGGTNWGNL-GHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYLVANP 361
Query: 349 ---ANSTVTSLGNYEEAHVFSSESGQCAAFL---SNYHTESAAR 386
+ ST T+ + + S S + F+ S+Y ++++
Sbjct: 362 GDLSTSTYTNTADLTVTPLLGSNSSASSFFVIRHSDYSSQASVE 405
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 153/315 (48%), Gaps = 41/315 (13%)
Query: 36 INGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRY 95
++G+ + SG+IHY R E W + K G + ++TYV WN+HEP G ++FEG
Sbjct: 12 LDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDL 71
Query: 96 DLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFT 155
DL +F+++ Q GLY +R P+ICAEW FGG P WL + + R+ + + A+ +
Sbjct: 72 DLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWL-LTKNMRIRSSDPAYIEAVGRYY 130
Query: 156 QKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEFGSAGE--AYMKWAAEMAVE----- 208
+++ + GG I++ Q+ENEY GS GE AY++ ++ E
Sbjct: 131 DQLLPRLVPRL--LDNGGNILMMQVENEY-------GSYGEDKAYLRAIRQLMEECGVTC 181
Query: 209 --LNTEVPW-VMCKEEDAPDPVINTCNGFYCHS----------FSPNKPSKPKMWTEAWT 255
++ PW K + + F + F + P M E W
Sbjct: 182 PLFTSDGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFWD 241
Query: 256 GWFSDFGGQNYQRPVEDLAFAVARFIQKGGSFVNYYMYHGGTNFGRTAGG--------PF 307
GWF+ + R ++LA AV +++G +N YM+HGGTNFG G P
Sbjct: 242 GWFNRWKEPIITRDPKELADAVREVLEQGS--INLYMFHGGTNFGFMNGCSARGTLDLPQ 299
Query: 308 ITTSYDYDAPIDEYG 322
+ TSYDYDA +DE G
Sbjct: 300 V-TSYDYDALLDEEG 313
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 26/88 (29%)
Query: 619 MDMSSMNKGQVLINGQNIGRYWTAIANGACRNCNYTGTYRPTNCGFDCGKPSQQWYHVPR 678
+D+S KG +NGQN+GR+W N G P+ Y +P
Sbjct: 523 LDLSEFGKGVAFVNGQNLGRFW--------------------NVG-----PTLSLY-IPH 556
Query: 679 SWLKPRQNLLIVFEEISGDASKISLVKR 706
S+LK N +I+FE +I L ++
Sbjct: 557 SYLKEGANRIIIFETEGQYKEEIHLTRK 584
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 117/407 (28%), Positives = 172/407 (42%), Gaps = 53/407 (13%)
Query: 27 VTYDSKALIINGQRRILFSGSIHYPR-SSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPS 85
VT+D +L ++G+R ++FSG +H R ++ + K K G + + YV W + E
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 86 PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNK 145
PG + +G + L F + KAG+Y+ R GPYI AE + GGFP WL+ V+G RTD
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG-KLRTDAP 144
Query: 146 PFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEFGSAGEAYMKWAAEM 205
+ HA N+ I ++ ++ + GGP+IL Q ENEY E + YM++ +
Sbjct: 145 DYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQ 202
Query: 206 AVELNTEVPWVM-------------------------------CKEEDA-PDPVINTCNG 233
A VP + C A PD + T
Sbjct: 203 ARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTT-- 260
Query: 234 FYCHSFSPNKPSKPKMWTEAWTGWFSDFGGQNYQRPVEDLAFAVARFIQK-----GGSFV 288
+ PS P E G F FGG +++ + R K G +
Sbjct: 261 -WRQDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIF 319
Query: 289 NYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLIREPKYGHLKKLHKAIKLCENALLT 348
N YM GGTN+G G P TSYDY A I E I KY LK + +K+ +T
Sbjct: 320 NIYMTFGGTNWGNL-GHPGGYTSYDYGASIREDRRIDREKYSELKLQGQFLKVSP-GYIT 377
Query: 349 ANSTVTSLGNYEEAH------VFSSESGQCAAFL-SNYHTESAARVT 388
A + G Y ++ + + ESG +NY + A T
Sbjct: 378 ATPENATQGVYSDSQNIVITPLLAKESGDFFVVRHANYSSTDTASYT 424
>pdb|2CKR|A Chain A, X-Ray Crystal Structure Of The Catalytic Domain Of
Thermobifida Fusca Endoglucanase Cel5a (E5) E355q In
Complex With Cellotetraose
pdb|2CKR|B Chain B, X-Ray Crystal Structure Of The Catalytic Domain Of
Thermobifida Fusca Endoglucanase Cel5a (E5) E355q In
Complex With Cellotetraose
Length = 306
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 23 TLSSVTYDSKALIINGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVH 82
+L ++ YD KA II I G PR + LI A GL VI V W++
Sbjct: 47 SLDALAYDWKADIIRLSMYIQEDGYETNPRGFTDRMHQLIDMATARGLYVI---VDWHIL 103
Query: 83 EPSPGNYNFE 92
P +YN +
Sbjct: 104 TPGDPHYNLD 113
>pdb|2CKS|A Chain A, X-Ray Crystal Structure Of The Catalytic Domain Of
Thermobifida Fusca Endoglucanase Cel5a (E5)
pdb|2CKS|B Chain B, X-Ray Crystal Structure Of The Catalytic Domain Of
Thermobifida Fusca Endoglucanase Cel5a (E5)
Length = 306
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 23 TLSSVTYDSKALIINGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVH 82
+L ++ YD KA II I G PR + LI A GL VI V W++
Sbjct: 47 SLDALAYDWKADIIRLSMYIQEDGYETNPRGFTDRMHQLIDMATARGLYVI---VDWHIL 103
Query: 83 EPSPGNYNFE 92
P +YN +
Sbjct: 104 TPGDPHYNLD 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,433,221
Number of Sequences: 62578
Number of extensions: 1077313
Number of successful extensions: 2527
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2497
Number of HSP's gapped (non-prelim): 23
length of query: 711
length of database: 14,973,337
effective HSP length: 106
effective length of query: 605
effective length of database: 8,340,069
effective search space: 5045741745
effective search space used: 5045741745
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)