Query 005160
Match_columns 711
No_of_seqs 231 out of 1490
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 19:02:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 3E-185 5E-190 1583.7 64.5 700 6-710 4-730 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 1E-150 2E-155 1251.6 43.8 630 15-709 8-640 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 6.7E-88 1.5E-92 723.2 18.5 297 33-338 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 6.9E-38 1.5E-42 358.2 11.3 289 27-324 1-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 1.5E-20 3.1E-25 207.1 14.6 263 48-341 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.5 4.4E-13 9.5E-18 143.3 20.3 192 27-259 1-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.4 4.5E-11 9.8E-16 139.8 26.2 159 25-218 276-448 (604)
8 PRK10340 ebgA cryptic beta-D-g 99.3 1.5E-10 3.2E-15 142.2 24.4 260 25-340 318-603 (1021)
9 PRK09525 lacZ beta-D-galactosi 99.3 3.7E-10 8.1E-15 138.5 24.6 150 25-219 334-489 (1027)
10 PF13204 DUF4038: Protein of u 99.1 2.6E-09 5.6E-14 114.2 16.3 240 31-299 2-288 (289)
11 COG3250 LacZ Beta-galactosidas 99.1 3.4E-09 7.3E-14 126.1 18.0 120 25-186 284-409 (808)
12 PF13364 BetaGal_dom4_5: Beta- 99.0 1.7E-09 3.7E-14 99.5 7.8 68 598-691 33-104 (111)
13 PF00150 Cellulase: Cellulase 98.9 2E-08 4.4E-13 105.0 14.7 160 36-217 3-170 (281)
14 PF13364 BetaGal_dom4_5: Beta- 98.4 1.5E-06 3.3E-11 80.0 9.5 84 437-527 24-110 (111)
15 PF02837 Glyco_hydro_2_N: Glyc 98.1 1.2E-05 2.6E-10 78.4 10.3 98 444-547 64-163 (167)
16 PF03198 Glyco_hydro_72: Gluca 98.1 4.8E-05 1E-09 81.2 14.2 153 25-215 9-179 (314)
17 smart00633 Glyco_10 Glycosyl h 98.1 8.1E-06 1.8E-10 85.7 8.5 117 79-220 3-126 (254)
18 PLN02705 beta-amylase 97.7 0.00012 2.6E-09 83.3 9.5 82 54-139 266-357 (681)
19 TIGR03356 BGL beta-galactosida 97.7 8.8E-05 1.9E-09 83.7 8.5 97 56-164 54-151 (427)
20 PLN02905 beta-amylase 97.7 0.00016 3.4E-09 82.6 9.7 82 54-139 284-375 (702)
21 PLN02801 beta-amylase 97.6 0.00019 4.1E-09 80.6 9.7 82 54-139 35-126 (517)
22 PLN00197 beta-amylase; Provisi 97.6 0.00019 4.2E-09 81.1 9.7 82 54-139 125-216 (573)
23 PLN02803 beta-amylase 97.6 0.00031 6.7E-09 79.3 9.8 83 54-140 105-197 (548)
24 PLN02161 beta-amylase 97.5 0.00035 7.6E-09 78.4 9.9 84 54-140 115-207 (531)
25 PF01373 Glyco_hydro_14: Glyco 97.2 0.00045 9.8E-09 76.2 5.2 115 57-181 17-153 (402)
26 PF00331 Glyco_hydro_10: Glyco 97.1 0.00071 1.5E-08 73.6 5.8 157 43-221 11-180 (320)
27 COG3693 XynA Beta-1,4-xylanase 97.0 0.0033 7.1E-08 67.3 9.9 133 65-220 55-194 (345)
28 PF14488 DUF4434: Domain of un 97.0 0.013 2.7E-07 58.0 13.0 136 51-216 15-158 (166)
29 PF00232 Glyco_hydro_1: Glycos 96.9 0.0011 2.5E-08 75.4 5.5 97 56-164 58-156 (455)
30 PF07745 Glyco_hydro_53: Glyco 96.8 0.0042 9.2E-08 67.8 8.8 137 59-220 27-178 (332)
31 PRK10150 beta-D-glucuronidase; 96.6 0.01 2.2E-07 70.0 10.8 99 445-549 62-178 (604)
32 PF02837 Glyco_hydro_2_N: Glyc 96.6 0.0041 9E-08 60.5 6.1 67 598-691 66-136 (167)
33 PRK15014 6-phospho-beta-glucos 96.4 0.0079 1.7E-07 69.0 8.0 96 57-164 70-168 (477)
34 PRK09852 cryptic 6-phospho-bet 96.4 0.0083 1.8E-07 68.7 7.9 96 56-163 71-169 (474)
35 PRK13511 6-phospho-beta-galact 96.2 0.014 3E-07 66.9 8.2 96 56-163 54-150 (469)
36 PRK10340 ebgA cryptic beta-D-g 96.1 0.019 4.1E-07 71.7 9.7 94 448-550 109-206 (1021)
37 PLN02998 beta-glucosidase 96.1 0.0061 1.3E-07 70.2 5.0 100 56-163 82-183 (497)
38 TIGR01233 lacG 6-phospho-beta- 96.0 0.019 4.1E-07 65.7 8.5 96 56-163 53-149 (467)
39 PLN02814 beta-glucosidase 96.0 0.0073 1.6E-07 69.7 5.0 96 56-163 77-174 (504)
40 COG2730 BglC Endoglucanase [Ca 95.9 0.021 4.4E-07 64.3 8.0 115 54-186 66-193 (407)
41 PF14871 GHL6: Hypothetical gl 95.9 0.052 1.1E-06 51.7 9.5 98 60-162 4-123 (132)
42 PRK09593 arb 6-phospho-beta-gl 95.9 0.012 2.7E-07 67.5 6.0 100 56-163 73-175 (478)
43 PRK09589 celA 6-phospho-beta-g 95.8 0.012 2.7E-07 67.4 5.5 100 56-163 67-169 (476)
44 KOG2230 Predicted beta-mannosi 95.7 0.15 3.2E-06 58.2 13.3 149 32-220 328-494 (867)
45 COG3867 Arabinogalactan endo-1 95.7 0.047 1E-06 57.9 8.9 111 57-185 64-182 (403)
46 PRK09525 lacZ beta-D-galactosi 95.7 0.038 8.2E-07 69.0 9.7 93 448-549 120-217 (1027)
47 PLN02849 beta-glucosidase 95.7 0.012 2.6E-07 67.8 5.1 100 56-163 79-180 (503)
48 COG2723 BglB Beta-glucosidase/ 94.1 0.062 1.3E-06 60.7 5.1 96 56-163 59-157 (460)
49 PRK09936 hypothetical protein; 93.1 0.8 1.7E-05 49.0 11.0 58 51-114 33-91 (296)
50 PF02638 DUF187: Glycosyl hydr 92.4 0.61 1.3E-05 50.7 9.3 117 54-181 17-161 (311)
51 TIGR01515 branching_enzym alph 92.4 1.9 4.1E-05 51.3 14.1 57 59-115 159-226 (613)
52 PLN02447 1,4-alpha-glucan-bran 92.1 3.2 7E-05 50.3 15.6 60 55-117 250-322 (758)
53 PRK14706 glycogen branching en 91.6 3.2 7E-05 49.6 14.8 51 62-115 174-237 (639)
54 smart00642 Aamy Alpha-amylase 91.5 0.55 1.2E-05 46.4 7.0 68 55-122 18-97 (166)
55 smart00812 Alpha_L_fucos Alpha 91.5 28 0.00061 39.1 22.5 247 48-346 76-337 (384)
56 PRK05402 glycogen branching en 91.4 2.3 5E-05 51.6 13.5 53 60-115 269-335 (726)
57 PF05913 DUF871: Bacterial pro 89.1 0.77 1.7E-05 50.9 6.4 70 44-119 2-71 (357)
58 PRK12568 glycogen branching en 88.0 11 0.00024 45.7 15.4 56 59-117 273-341 (730)
59 TIGR00542 hxl6Piso_put hexulos 87.4 7.7 0.00017 41.0 12.5 131 55-213 15-149 (279)
60 PRK01060 endonuclease IV; Prov 87.2 9.5 0.0002 40.2 13.1 95 58-180 14-110 (281)
61 PF14307 Glyco_tran_WbsX: Glyc 87.0 7.2 0.00016 43.0 12.4 135 54-217 56-195 (345)
62 COG3934 Endo-beta-mannanase [C 86.9 0.58 1.3E-05 52.9 3.6 156 33-207 3-168 (587)
63 PRK14705 glycogen branching en 86.0 14 0.0003 47.4 15.3 53 60-115 770-835 (1224)
64 cd00019 AP2Ec AP endonuclease 85.9 7.2 0.00016 41.2 11.3 98 56-182 10-108 (279)
65 PRK13210 putative L-xylulose 5 85.8 7.9 0.00017 40.7 11.5 132 56-213 16-149 (284)
66 PRK09441 cytoplasmic alpha-amy 85.7 1.2 2.6E-05 51.2 5.6 61 55-115 18-101 (479)
67 COG1649 Uncharacterized protei 85.2 4.1 9E-05 45.9 9.3 122 54-185 62-210 (418)
68 PRK12313 glycogen branching en 84.1 1.9 4.1E-05 51.5 6.5 51 62-115 177-240 (633)
69 PF01261 AP_endonuc_2: Xylose 83.7 2.5 5.5E-05 41.7 6.3 125 62-213 1-128 (213)
70 PF01229 Glyco_hydro_39: Glyco 83.4 4.1 8.8E-05 47.1 8.6 65 46-116 29-105 (486)
71 KOG0496 Beta-galactosidase [Ca 83.4 1.1 2.5E-05 52.4 4.1 28 308-335 325-352 (649)
72 TIGR02402 trehalose_TreZ malto 82.9 2.1 4.6E-05 50.1 6.1 54 59-115 114-180 (542)
73 TIGR02631 xylA_Arthro xylose i 82.2 23 0.00049 39.8 13.6 90 55-163 31-125 (382)
74 PF00128 Alpha-amylase: Alpha 82.0 1.5 3.3E-05 45.9 4.2 57 59-115 7-72 (316)
75 PRK13209 L-xylulose 5-phosphat 80.7 15 0.00032 38.8 11.1 129 57-213 22-154 (283)
76 PF02679 ComA: (2R)-phospho-3- 79.6 2.7 5.9E-05 44.1 4.9 52 55-116 83-134 (244)
77 PLN02960 alpha-amylase 79.4 3.6 7.7E-05 50.4 6.4 54 59-115 420-486 (897)
78 COG0296 GlgB 1,4-alpha-glucan 78.1 3.7 8E-05 48.6 5.9 58 54-114 163-233 (628)
79 PF03659 Glyco_hydro_71: Glyco 78.0 9.1 0.0002 43.0 8.8 54 53-115 14-67 (386)
80 PRK09856 fructoselysine 3-epim 77.4 42 0.00091 35.1 13.3 129 57-213 14-145 (275)
81 PF13200 DUF4015: Putative gly 77.2 11 0.00023 41.3 8.8 112 54-166 11-137 (316)
82 TIGR02403 trehalose_treC alpha 77.1 3.6 7.9E-05 48.2 5.6 62 54-115 25-95 (543)
83 COG3589 Uncharacterized conser 75.9 6.7 0.00014 42.9 6.6 72 44-122 4-76 (360)
84 smart00518 AP2Ec AP endonuclea 75.9 46 0.00099 34.8 13.1 101 46-179 3-104 (273)
85 PF02065 Melibiase: Melibiase; 75.9 42 0.00092 37.9 13.3 89 49-137 51-148 (394)
86 TIGR02104 pulA_typeI pullulana 75.9 4.3 9.2E-05 48.3 5.8 55 60-115 168-249 (605)
87 TIGR03234 OH-pyruv-isom hydrox 75.1 59 0.0013 33.7 13.5 43 57-113 15-57 (254)
88 cd06593 GH31_xylosidase_YicI Y 75.1 7.4 0.00016 42.0 6.9 68 53-120 21-91 (308)
89 PRK10785 maltodextrin glucosid 73.4 6.9 0.00015 46.5 6.6 58 58-115 181-246 (598)
90 TIGR03849 arch_ComA phosphosul 73.1 7.5 0.00016 40.7 6.0 53 54-116 69-121 (237)
91 PF14587 Glyco_hydr_30_2: O-Gl 72.9 28 0.0006 39.1 10.7 139 66-219 57-226 (384)
92 TIGR01531 glyc_debranch glycog 72.9 11 0.00024 48.3 8.5 92 54-151 130-236 (1464)
93 PF14683 CBM-like: Polysacchar 72.8 3.7 7.9E-05 40.7 3.5 63 623-695 91-153 (167)
94 PRK10933 trehalose-6-phosphate 72.7 7.2 0.00016 45.8 6.5 57 56-115 33-101 (551)
95 TIGR02456 treS_nterm trehalose 71.7 5.6 0.00012 46.6 5.3 59 54-114 26-95 (539)
96 PRK09505 malS alpha-amylase; R 71.6 7.6 0.00017 46.8 6.5 58 58-115 232-312 (683)
97 PRK09997 hydroxypyruvate isome 71.5 69 0.0015 33.4 13.0 49 48-113 10-58 (258)
98 cd06595 GH31_xylosidase_XylS-l 70.2 55 0.0012 35.2 12.1 65 54-118 23-97 (292)
99 TIGR02100 glgX_debranch glycog 70.1 23 0.0005 42.9 10.1 55 61-115 189-265 (688)
100 PF13199 Glyco_hydro_66: Glyco 69.9 1.1E+02 0.0023 36.3 15.1 80 55-134 117-211 (559)
101 PF11324 DUF3126: Protein of u 69.7 11 0.00024 31.4 5.0 32 477-508 25-58 (63)
102 PRK09989 hypothetical protein; 69.3 53 0.0011 34.2 11.6 42 58-113 17-58 (258)
103 cd06592 GH31_glucosidase_KIAA1 67.5 18 0.00038 39.2 7.7 68 51-121 25-96 (303)
104 PRK13398 3-deoxy-7-phosphohept 67.1 27 0.00059 37.2 8.9 77 33-115 20-98 (266)
105 COG3623 SgaU Putative L-xylulo 65.8 51 0.0011 34.6 10.0 96 56-180 18-115 (287)
106 cd06589 GH31 The enzymes of gl 63.8 1.4E+02 0.003 31.6 13.5 65 54-119 22-90 (265)
107 PRK14510 putative bifunctional 61.6 12 0.00026 48.1 5.8 56 60-115 191-267 (1221)
108 TIGR02401 trehalose_TreY malto 60.9 19 0.00042 44.1 7.0 64 54-117 14-87 (825)
109 PF01791 DeoC: DeoC/LacD famil 60.9 3.2 6.9E-05 43.1 0.4 54 59-115 79-132 (236)
110 PLN02361 alpha-amylase 60.6 19 0.00041 40.7 6.5 57 59-115 32-96 (401)
111 PRK12677 xylose isomerase; Pro 60.3 57 0.0012 36.7 10.2 89 57-163 32-124 (384)
112 PF08531 Bac_rhamnosid_N: Alph 60.0 9.3 0.0002 37.8 3.6 53 618-691 7-62 (172)
113 cd04908 ACT_Bt0572_1 N-termina 59.9 28 0.00061 28.3 5.9 55 55-113 12-66 (66)
114 PF06832 BiPBP_C: Penicillin-B 59.8 17 0.00036 31.7 4.8 49 472-528 35-84 (89)
115 PF08308 PEGA: PEGA domain; I 59.2 9 0.00019 31.8 2.8 22 472-493 3-24 (71)
116 PF12876 Cellulase-like: Sugar 59.0 16 0.00035 31.9 4.6 47 171-217 7-62 (88)
117 KOG2024 Beta-Glucuronidase GUS 58.3 15 0.00033 38.9 4.8 57 435-492 72-131 (297)
118 PF08531 Bac_rhamnosid_N: Alph 58.2 36 0.00077 33.7 7.3 56 471-527 6-68 (172)
119 PRK03705 glycogen debranching 57.3 17 0.00036 43.8 5.7 55 61-115 184-262 (658)
120 cd06565 GH20_GcnA-like Glycosy 56.4 68 0.0015 34.7 9.7 105 54-162 15-130 (301)
121 cd06591 GH31_xylosidase_XylS X 56.3 26 0.00056 38.2 6.5 65 54-119 22-90 (319)
122 PRK08673 3-deoxy-7-phosphohept 56.2 40 0.00086 37.3 7.9 76 33-115 86-164 (335)
123 PRK14511 maltooligosyl trehalo 55.9 27 0.00058 43.2 7.1 61 53-117 17-91 (879)
124 KOG0626 Beta-glucosidase, lact 55.5 23 0.00049 41.2 6.0 113 57-179 92-208 (524)
125 PRK14507 putative bifunctional 55.3 25 0.00055 46.4 7.1 61 54-117 756-829 (1693)
126 cd06598 GH31_transferase_CtsZ 55.0 30 0.00065 37.6 6.8 67 54-120 22-95 (317)
127 PF01261 AP_endonuc_2: Xylose 54.7 88 0.0019 30.5 9.6 104 56-187 27-137 (213)
128 smart00481 POLIIIAc DNA polyme 54.2 37 0.00079 27.7 5.7 44 58-114 17-60 (67)
129 cd06602 GH31_MGAM_SI_GAA This 54.0 30 0.00065 38.1 6.6 73 48-121 13-92 (339)
130 COG5309 Exo-beta-1,3-glucanase 53.8 1.7E+02 0.0036 31.5 11.5 119 54-220 61-179 (305)
131 PF01120 Alpha_L_fucos: Alpha- 53.3 3.5E+02 0.0076 29.8 19.3 240 53-344 91-342 (346)
132 cd06603 GH31_GANC_GANAB_alpha 51.9 33 0.00072 37.6 6.6 68 54-122 22-91 (339)
133 cd00544 CobU Adenosylcobinamid 51.0 1.7E+02 0.0036 28.9 10.8 50 151-208 101-150 (169)
134 TIGR02102 pullulan_Gpos pullul 51.0 28 0.00062 44.2 6.4 21 95-115 555-575 (1111)
135 TIGR00677 fadh2_euk methylenet 51.0 62 0.0013 34.8 8.2 109 42-164 130-251 (281)
136 PF10566 Glyco_hydro_97: Glyco 50.8 53 0.0011 35.3 7.6 115 53-175 29-159 (273)
137 PF02055 Glyco_hydro_30: O-Gly 50.3 61 0.0013 37.8 8.6 271 43-340 78-424 (496)
138 PLN00196 alpha-amylase; Provis 48.5 41 0.00088 38.4 6.7 57 59-115 47-112 (428)
139 cd06600 GH31_MGAM-like This fa 48.0 42 0.00091 36.5 6.5 72 48-120 13-89 (317)
140 cd06599 GH31_glycosidase_Aec37 47.6 58 0.0013 35.4 7.5 66 55-120 28-98 (317)
141 PRK14582 pgaB outer membrane N 47.6 1.1E+02 0.0023 37.1 10.2 98 56-164 334-455 (671)
142 PRK00042 tpiA triosephosphate 47.6 32 0.00069 36.4 5.3 48 62-116 79-127 (250)
143 TIGR00419 tim triosephosphate 47.5 38 0.00082 34.8 5.7 44 62-115 74-117 (205)
144 PRK08645 bifunctional homocyst 46.7 68 0.0015 38.3 8.5 111 37-163 459-578 (612)
145 cd02742 GH20_hexosaminidase Be 46.2 71 0.0015 34.5 7.9 60 53-115 13-92 (303)
146 cd06604 GH31_glucosidase_II_Ma 45.6 50 0.0011 36.2 6.7 72 48-120 13-89 (339)
147 PTZ00372 endonuclease 4-like p 45.3 3.1E+02 0.0067 31.3 12.9 89 60-180 145-239 (413)
148 PF01055 Glyco_hydro_31: Glyco 44.8 39 0.00085 38.3 5.9 70 53-123 40-111 (441)
149 TIGR00587 nfo apurinic endonuc 44.4 3.5E+02 0.0076 28.6 12.8 79 59-163 14-98 (274)
150 COG1306 Uncharacterized conser 43.8 53 0.0011 35.6 6.1 59 54-115 75-144 (400)
151 COG0366 AmyA Glycosidases [Car 43.7 30 0.00066 39.3 4.9 53 60-115 33-97 (505)
152 smart00854 PGA_cap Bacterial c 41.8 2.3E+02 0.0049 29.3 10.6 49 51-112 59-107 (239)
153 cd00311 TIM Triosephosphate is 41.1 55 0.0012 34.4 5.9 48 63-116 78-125 (242)
154 PRK09856 fructoselysine 3-epim 40.7 43 0.00094 35.0 5.1 59 56-118 90-153 (275)
155 TIGR02455 TreS_stutzeri trehal 40.4 71 0.0015 38.3 7.1 76 54-133 76-176 (688)
156 cd06601 GH31_lyase_GLase GLase 40.3 76 0.0016 35.0 7.1 72 48-120 13-89 (332)
157 KOG0259 Tyrosine aminotransfer 40.2 32 0.00068 38.5 4.0 87 24-114 150-238 (447)
158 COG2100 Predicted Fe-S oxidore 39.6 2.2E+02 0.0048 31.5 10.0 115 60-212 205-331 (414)
159 PF00728 Glyco_hydro_20: Glyco 38.8 56 0.0012 35.5 5.8 62 53-114 15-92 (351)
160 PLN02877 alpha-amylase/limit d 37.9 64 0.0014 40.5 6.5 21 95-115 466-486 (970)
161 PRK09875 putative hydrolase; P 37.2 1.9E+02 0.0042 31.3 9.4 88 26-133 7-94 (292)
162 cd06547 GH85_ENGase Endo-beta- 36.7 68 0.0015 35.5 6.0 109 72-211 32-140 (339)
163 cd06418 GH25_BacA-like BacA is 36.5 1.5E+02 0.0032 30.6 8.0 91 53-165 49-140 (212)
164 PRK09432 metF 5,10-methylenete 36.4 1.1E+02 0.0024 33.1 7.5 88 61-164 168-266 (296)
165 PRK14565 triosephosphate isome 36.3 62 0.0013 34.0 5.3 48 62-116 78-126 (237)
166 cd06545 GH18_3CO4_chitinase Th 36.3 1.4E+02 0.0031 31.1 8.1 96 85-209 35-131 (253)
167 TIGR02103 pullul_strch alpha-1 36.3 57 0.0012 40.7 5.8 21 95-115 404-424 (898)
168 PRK13209 L-xylulose 5-phosphat 35.5 2.3E+02 0.005 29.7 9.7 103 52-184 53-160 (283)
169 PRK09997 hydroxypyruvate isome 34.7 66 0.0014 33.5 5.3 60 56-115 85-144 (258)
170 cd06416 GH25_Lys1-like Lys-1 i 34.2 97 0.0021 31.0 6.3 87 46-135 56-157 (196)
171 COG0149 TpiA Triosephosphate i 34.2 80 0.0017 33.5 5.7 71 38-116 58-129 (251)
172 KOG3833 Uncharacterized conser 34.1 42 0.00091 36.5 3.6 53 57-115 444-499 (505)
173 PRK09267 flavodoxin FldA; Vali 33.9 3E+02 0.0065 26.6 9.5 74 36-112 44-117 (169)
174 KOG4039 Serine/threonine kinas 33.5 67 0.0015 32.5 4.7 67 50-121 103-172 (238)
175 cd06597 GH31_transferase_CtsY 33.3 1.1E+02 0.0024 33.8 6.9 73 48-120 13-110 (340)
176 PRK13210 putative L-xylulose 5 33.3 73 0.0016 33.4 5.4 59 56-115 94-153 (284)
177 COG2884 FtsE Predicted ATPase 33.1 37 0.0008 34.8 2.9 16 625-640 55-70 (223)
178 PF14307 Glyco_tran_WbsX: Glyc 33.1 82 0.0018 34.7 6.0 43 30-75 150-194 (345)
179 cd01299 Met_dep_hydrolase_A Me 32.4 1.2E+02 0.0025 32.8 7.0 61 54-115 118-180 (342)
180 PLN02429 triosephosphate isome 32.1 76 0.0016 34.8 5.3 44 63-116 141-188 (315)
181 PRK14566 triosephosphate isome 32.1 92 0.002 33.2 5.8 74 36-116 62-136 (260)
182 cd06563 GH20_chitobiase-like T 31.9 1.9E+02 0.004 32.1 8.5 60 53-115 15-106 (357)
183 TIGR00433 bioB biotin syntheta 31.7 73 0.0016 33.8 5.2 52 59-113 123-176 (296)
184 cd07381 MPP_CapA CapA and rela 31.6 4.4E+02 0.0096 27.0 10.8 122 59-213 67-210 (239)
185 TIGR03234 OH-pyruv-isom hydrox 31.5 72 0.0016 33.0 5.0 58 56-115 84-143 (254)
186 TIGR00676 fadh2 5,10-methylene 31.5 1.7E+02 0.0037 31.1 7.9 106 41-163 125-246 (272)
187 PF08306 Glyco_hydro_98M: Glyc 31.3 57 0.0012 35.6 4.1 60 42-112 104-170 (324)
188 cd06562 GH20_HexA_HexB-like Be 31.3 2.2E+02 0.0047 31.5 8.9 63 53-115 15-90 (348)
189 PTZ00333 triosephosphate isome 31.3 98 0.0021 32.9 5.9 47 63-116 83-130 (255)
190 PF02228 Gag_p19: Major core p 31.2 22 0.00048 30.7 0.8 37 54-107 20-56 (92)
191 PLN02784 alpha-amylase 31.1 73 0.0016 39.4 5.4 57 59-115 524-588 (894)
192 PF07691 PA14: PA14 domain; I 31.0 2.3E+02 0.0049 26.2 7.9 70 449-526 47-122 (145)
193 COG1523 PulA Type II secretory 30.4 73 0.0016 38.6 5.2 54 62-115 206-285 (697)
194 KOG3625 Alpha amylase [Carbohy 30.3 52 0.0011 40.6 3.9 75 54-137 140-234 (1521)
195 PRK12331 oxaloacetate decarbox 29.7 1.2E+02 0.0026 34.9 6.7 56 48-115 88-143 (448)
196 PF14701 hDGE_amylase: glucano 29.5 1.9E+02 0.0041 33.0 8.0 90 54-149 20-126 (423)
197 PF08924 DUF1906: Domain of un 29.4 1.6E+02 0.0034 28.1 6.4 91 54-164 36-127 (136)
198 COG1891 Uncharacterized protei 29.2 18 0.0004 36.1 0.0 64 43-114 118-186 (235)
199 COG0167 PyrD Dihydroorotate de 28.3 7.3E+02 0.016 27.2 12.0 128 54-221 107-250 (310)
200 COG2876 AroA 3-deoxy-D-arabino 27.7 4.6E+02 0.01 28.2 9.9 76 34-115 39-116 (286)
201 cd06564 GH20_DspB_LnbB-like Gl 27.7 2.4E+02 0.0052 30.8 8.4 60 53-115 14-102 (326)
202 PRK15492 triosephosphate isome 27.3 1.2E+02 0.0027 32.2 5.8 48 63-116 88-135 (260)
203 cd06568 GH20_SpHex_like A subg 26.6 1.6E+02 0.0034 32.4 6.7 63 53-115 15-95 (329)
204 PRK06703 flavodoxin; Provision 26.6 3.1E+02 0.0067 26.0 8.0 100 36-163 46-148 (151)
205 PRK05265 pyridoxine 5'-phospha 26.4 1.2E+02 0.0027 31.9 5.4 50 54-121 111-161 (239)
206 PF00282 Pyridoxal_deC: Pyrido 26.4 1.1E+02 0.0025 34.0 5.7 71 37-114 139-230 (373)
207 COG1099 Predicted metal-depend 26.4 2.2E+02 0.0047 29.9 7.0 55 59-116 14-71 (254)
208 PRK14567 triosephosphate isome 26.4 1.3E+02 0.0029 31.9 5.8 47 63-116 79-126 (253)
209 PLN02561 triosephosphate isome 26.2 1.3E+02 0.0029 31.9 5.8 48 62-116 81-129 (253)
210 PF03644 Glyco_hydro_85: Glyco 25.8 50 0.0011 36.0 2.6 114 71-217 27-143 (311)
211 PTZ00372 endonuclease 4-like p 25.6 4.5E+02 0.0097 30.0 10.1 83 32-116 149-240 (413)
212 PLN02389 biotin synthase 25.5 92 0.002 35.0 4.7 51 59-112 178-230 (379)
213 PF13380 CoA_binding_2: CoA bi 25.3 1.7E+02 0.0038 26.9 5.8 89 7-112 12-106 (116)
214 cd02940 DHPD_FMN Dihydropyrimi 25.2 5.7E+02 0.012 27.5 10.6 22 54-75 111-132 (299)
215 cd04882 ACT_Bt0572_2 C-termina 25.2 1.3E+02 0.0028 23.7 4.4 54 56-111 11-64 (65)
216 TIGR01698 PUNP purine nucleoti 25.0 1.2E+02 0.0025 32.0 5.0 55 35-89 47-104 (237)
217 PF00120 Gln-synt_C: Glutamine 24.8 1.4E+02 0.0031 31.3 5.8 61 54-119 67-139 (259)
218 PRK10658 putative alpha-glucos 24.8 2.5E+02 0.0054 34.0 8.5 66 54-120 281-350 (665)
219 TIGR01361 DAHP_synth_Bsub phos 24.8 1.8E+02 0.0038 30.9 6.5 76 33-115 18-96 (260)
220 PF05763 DUF835: Protein of un 24.8 4.9E+02 0.011 24.9 8.8 103 87-210 1-111 (136)
221 PLN03059 beta-galactosidase; P 24.7 3.5E+02 0.0075 33.7 9.5 72 598-695 468-548 (840)
222 TIGR00542 hxl6Piso_put hexulos 24.7 1.3E+02 0.0028 31.7 5.5 55 57-115 95-153 (279)
223 cd06594 GH31_glucosidase_YihQ 24.5 2.6E+02 0.0057 30.4 7.9 67 54-120 21-96 (317)
224 cd06570 GH20_chitobiase-like_1 24.1 3.2E+02 0.007 29.8 8.5 63 53-115 15-88 (311)
225 cd00537 MTHFR Methylenetetrahy 24.1 2.5E+02 0.0055 29.6 7.6 104 47-164 138-250 (274)
226 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.0 1.9E+02 0.0042 30.7 6.6 50 53-114 88-137 (275)
227 COG2179 Predicted hydrolase of 23.4 1.5E+02 0.0033 29.6 5.2 45 61-114 19-68 (175)
228 PF00121 TIM: Triosephosphate 23.3 70 0.0015 33.7 3.1 48 62-116 77-125 (244)
229 KOG1412 Aspartate aminotransfe 23.1 1.6E+02 0.0036 32.3 5.7 48 54-110 131-178 (410)
230 KOG1065 Maltase glucoamylase a 23.0 1.7E+02 0.0036 36.0 6.4 62 54-120 309-376 (805)
231 PF09587 PGA_cap: Bacterial ca 22.8 5.4E+02 0.012 26.7 9.7 80 32-119 122-227 (250)
232 PLN03036 glutamine synthetase; 22.8 2.6E+02 0.0056 32.1 7.6 66 56-127 230-307 (432)
233 PLN02763 hydrolase, hydrolyzin 22.7 2.4E+02 0.0053 35.7 7.9 74 48-122 190-268 (978)
234 PRK04302 triosephosphate isome 22.7 1.5E+02 0.0033 30.4 5.4 59 48-116 62-122 (223)
235 PRK10966 exonuclease subunit S 22.7 7.3E+02 0.016 28.1 11.3 85 40-137 41-135 (407)
236 PF02811 PHP: PHP domain; Int 22.5 1.7E+02 0.0037 27.7 5.4 46 57-115 17-62 (175)
237 PF07905 PucR: Purine cataboli 22.3 3.4E+02 0.0073 25.1 7.2 67 36-115 40-106 (123)
238 PRK07534 methionine synthase I 22.2 7.9E+02 0.017 27.1 11.1 74 98-209 221-296 (336)
239 PRK09485 mmuM homocysteine met 21.9 8.8E+02 0.019 26.2 11.3 75 96-207 227-303 (304)
240 PRK12858 tagatose 1,6-diphosph 21.9 89 0.0019 34.6 3.6 62 52-115 102-163 (340)
241 PRK14040 oxaloacetate decarbox 21.8 1.7E+02 0.0036 35.0 6.1 54 48-113 89-142 (593)
242 KOG0683 Glutamine synthetase [ 21.8 1.1E+02 0.0024 34.0 4.2 44 83-127 203-258 (380)
243 KOG0432 Valyl-tRNA synthetase 21.7 2.5E+02 0.0053 35.0 7.3 154 53-210 330-504 (995)
244 PRK10076 pyruvate formate lyas 21.6 3.4E+02 0.0075 27.9 7.7 132 55-213 53-209 (213)
245 COG5520 O-Glycosyl hydrolase [ 21.5 1.4E+02 0.0031 33.3 4.9 63 104-186 111-180 (433)
246 cd02810 DHOD_DHPD_FMN Dihydroo 21.4 2.2E+02 0.0047 30.2 6.4 60 54-117 109-171 (289)
247 cd00019 AP2Ec AP endonuclease 21.4 1E+02 0.0022 32.5 3.9 57 56-116 85-144 (279)
248 PLN02231 alanine transaminase 21.3 3.3E+02 0.0072 32.0 8.4 60 51-114 251-310 (534)
249 cd04740 DHOD_1B_like Dihydroor 21.2 2.7E+02 0.0059 29.6 7.2 59 54-116 100-162 (296)
250 PF12733 Cadherin-like: Cadher 21.2 2E+02 0.0043 24.6 5.1 56 452-524 16-72 (88)
251 PRK13396 3-deoxy-7-phosphohept 21.1 6E+02 0.013 28.4 9.9 76 33-115 93-172 (352)
252 COG1809 (2R)-phospho-3-sulfola 20.5 1.7E+02 0.0037 30.6 5.0 62 45-116 79-140 (258)
253 COG3684 LacD Tagatose-1,6-bisp 20.4 81 0.0018 33.6 2.7 61 52-115 107-167 (306)
254 COG2087 CobU Adenosyl cobinami 20.4 4.4E+02 0.0096 26.5 7.7 117 52-208 35-154 (175)
255 COG1735 Php Predicted metal-de 20.2 3.9E+02 0.0085 29.3 7.8 59 59-134 51-109 (316)
256 PF07071 DUF1341: Protein of u 20.0 2.3E+02 0.0049 29.2 5.7 43 58-115 137-182 (218)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=2.5e-185 Score=1583.72 Aligned_cols=700 Identities=67% Similarity=1.174 Sum_probs=638.0
Q ss_pred CcchHHHHHHHHHHhhcc-----ceeEEEcCCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCC
Q 005160 6 GSKSIFMSIVLSLCLHLT-----LSSVTYDSKALIINGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWN 80 (711)
Q Consensus 6 ~~~~~~~~~~~~l~~~~~-----~~~v~~d~~~f~~dGkp~~~~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn 80 (711)
+|-+.|++|.+.++++++ ..+|++|+++|+|||||++|+||+|||||+||++|+|||+||||+|+|||+||||||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn 83 (840)
T PLN03059 4 GSLVVFLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWN 83 (840)
T ss_pred cceehhhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 344455544444445543 479999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHH
Q 005160 81 VHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVL 160 (711)
Q Consensus 81 ~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~ 160 (711)
+|||+||+|||+|++||++||++|+|+||+|||||||||||||++||+|.||+++|+|++|++|++|+++|++|+++|++
T Consensus 84 ~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~ 163 (840)
T PLN03059 84 GHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVD 163 (840)
T ss_pred ccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccccCCCceEEeccccCccCcccccCchhHHHHHHHHHHHHHcCCCcceeecCCCCCCcccccCCCCcccccCC
Q 005160 161 MMKDEKLFKSQGGPIILSQIENEYEPEREEFGSAGEAYMKWAAEMAVELNTEVPWVMCKEEDAPDPVINTCNGFYCHSFS 240 (711)
Q Consensus 161 ~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (711)
+++++++++++||||||+|||||||++.+.++.+|++||+||+++++++|++|||+||++.+++++++++||+.+|+.|.
T Consensus 164 ~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~ 243 (840)
T PLN03059 164 MMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFK 243 (840)
T ss_pred HHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcc
Confidence 99988999999999999999999999866666789999999999999999999999999988888999999999999898
Q ss_pred CCCCCCCceeeecccccccCcCCCCCcCCHHHHHHHHHHHHHhCCeeeeeeEEeccCCCCCCCCCCcccCCCCCCCCCCc
Q 005160 241 PNKPSKPKMWTEAWTGWFSDFGGQNYQRPVEDLAFAVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFITTSYDYDAPIDE 320 (711)
Q Consensus 241 ~~~p~~P~~~tE~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDy~Apl~E 320 (711)
+.++.+|+|+||||+|||++||++++.|+++|++.+++++|++|+|++||||||||||||||||+++++|||||||||+|
T Consensus 244 ~~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E 323 (840)
T PLN03059 244 PNKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDE 323 (840)
T ss_pred cCCCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCcccc
Confidence 88888999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHHHHHHHhhhhccccCCCccccCCCccceeeeccCccceeeeecccccccceEEEecCccccCCCCc
Q 005160 321 YGLIREPKYGHLKKLHKAIKLCENALLTANSTVTSLGNYEEAHVFSSESGQCAAFLSNYHTESAARVTFNNKQYNLPPWS 400 (711)
Q Consensus 321 ~G~~~~pky~~lr~l~~~~~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~~~~~s 400 (711)
+|++|+|||.+||++|.+++.++++|+..+|....+|+.+++++|...+ .|++|+.|++.+..++|+|+|.+|.+|+||
T Consensus 324 ~G~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~S 402 (840)
T PLN03059 324 YGLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWS 402 (840)
T ss_pred ccCcchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccc
Confidence 9999768999999999999999888887778777899999999999766 799999999988899999999999999999
Q ss_pred eeecCCCcccccccccc------c-cccc-------------cccCCCCcccccccccccCCCCCCccEEEEEEEecCCC
Q 005160 401 ISILPDCKNIIFNTANT------F-NEDV-------------FSLEDDSTITTVGLLEQLNVTRDTSDYLWCSTSVNISS 460 (711)
Q Consensus 401 ~~i~~~~~~~~~~t~~~------~-~~~~-------------~~~~~~~p~~~~~~mEql~~t~d~~gy~~Y~t~i~~~~ 460 (711)
|||||||+.++|||++. . .+++ .+..++.|+++..++||++.|+|.+||+||+|+|....
T Consensus 403 vsilpd~~~~lfnta~v~~q~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~ 482 (840)
T PLN03059 403 VSILPDCKTAVFNTARLGAQSSQMKMNPVGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDP 482 (840)
T ss_pred eeecccccceeeeccccccccceeecccccccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecC
Confidence 99999999999999984 2 1222 11112347777888999999999999999999998876
Q ss_pred CCcccCCCCCCeeeeCCcceEEEEEECCEEEEEEeCcccceeeEEEeeeeccCCccEEEEEEecCCccccccCCCccccc
Q 005160 461 SDSFLHGGERPTLSVQSRGHALHVFVNGQLTGSASGTRTYKRFTFRGNVNLHAGVNTISLLSIAVGLPNNGPHFESYKTG 540 (711)
Q Consensus 461 ~~~~~~~g~~~~L~i~~~~D~~~vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~~~~~~kG 540 (711)
++..++.+.+++|+|.+++|++||||||+++|++++......+.++.++.++.|.|+|+||||||||+|||++|+++.||
T Consensus 483 ~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kG 562 (840)
T PLN03059 483 DEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAG 562 (840)
T ss_pred CccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCccccccccc
Confidence 65445667789999999999999999999999999876666788887788889999999999999999999999999999
Q ss_pred eeccEEEccccCCcccCCcCCceEEecCcchhhccccCCCCCCcccccccCCcccccCCCceEEEEEEeCCCCCCceEEe
Q 005160 541 VLGPVVLHGIDEGKRDLSWHKWSYKIGLQGEAMVTGLGSQSSNLVVSWVPSSLEHKKQQPLTWYKAYFDAPEGDEPLAMD 620 (711)
Q Consensus 541 I~G~V~l~g~~~~~~~L~~~~W~~~~~l~ge~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~yk~~F~~p~~~d~t~Ld 620 (711)
|+|+|+|+|++.++.+|+++.|.|+++|+||.+. ++.+++..+++|.+.+..+. .+||+|||++|++|++.||||||
T Consensus 563 I~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~--i~~~~~~~~~~W~~~~~~~~-~~p~twYK~~Fd~p~g~Dpv~LD 639 (840)
T PLN03059 563 VLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALS--LHTITGSSSVEWVEGSLLAQ-KQPLTWYKTTFDAPGGNDPLALD 639 (840)
T ss_pred ccccEEEecccCCceecccCccccccCccceecc--ccccCCCCCccccccccccC-CCCceEEEEEEeCCCCCCCEEEe
Confidence 9999999998888889999999999999999987 77655556788976544333 56799999999999999999999
Q ss_pred eCCCceEEEEECCeeeeeeecccc--cCCccCCccCCCCCCCCCCCCCCCCeeeeeecCccccCCCCcEEEEEEeecCCC
Q 005160 621 MSSMNKGQVLINGQNIGRYWTAIA--NGACRNCNYTGTYRPTNCGFDCGKPSQQWYHVPRSWLKPRQNLLIVFEEISGDA 698 (711)
Q Consensus 621 ~~g~gKG~v~VNG~nlGRYW~~~~--~G~~~~~~~~G~y~~~~~~~~~~~PQqtlYhvP~~~Lk~g~N~IvvfE~~~~~p 698 (711)
|++||||+|||||+||||||+..+ .| |+.|+|+|.|++.+|+||||+|||||||||++|||+|+|+||||||++++|
T Consensus 640 m~gmGKG~aWVNG~nIGRYW~~~a~~~g-C~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p 718 (840)
T PLN03059 640 MSSMGKGQIWINGQSIGRHWPAYTAHGS-CNGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNP 718 (840)
T ss_pred cccCCCeeEEECCcccccccccccccCC-CccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCC
Confidence 999999999999999999997622 35 488999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeccc
Q 005160 699 SKISLVKRLVTR 710 (711)
Q Consensus 699 ~~i~~~~~~~~~ 710 (711)
..|+|+++.+++
T Consensus 719 ~~I~~~~~~~~~ 730 (840)
T PLN03059 719 AGISLVKRTTDS 730 (840)
T ss_pred CceEEEEeecCc
Confidence 999999998764
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.6e-151 Score=1251.61 Aligned_cols=630 Identities=58% Similarity=1.044 Sum_probs=573.2
Q ss_pred HHHHHhhccceeEEEcCCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccc
Q 005160 15 VLSLCLHLTLSSVTYDSKALIINGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGR 94 (711)
Q Consensus 15 ~~~l~~~~~~~~v~~d~~~f~~dGkp~~~~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~ 94 (711)
+..|.++.....|++|++.|.+||+|++++||++||+|++|++|+++|+|+|++|+|+|+||||||.|||+||+|||+|+
T Consensus 8 l~~~~~~~~~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~ 87 (649)
T KOG0496|consen 8 LGLLSLSGSSFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGR 87 (649)
T ss_pred hhhhccccceeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccch
Confidence 34444444478899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCc
Q 005160 95 YDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGP 174 (711)
Q Consensus 95 ~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGp 174 (711)
.||++||++|++.||+|+||+||||||||++||+|.||..+|++.+|++|++|+++|++|+++|+++++ +|+++||||
T Consensus 88 ~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGP 165 (649)
T KOG0496|consen 88 YDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGP 165 (649)
T ss_pred hHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred eEEeccccCccCcccccCchhHHHHHHHHHHHHHcCCCcceeecCCCCCCcccccCCCCccc-ccCC-CCCCCCCceeee
Q 005160 175 IILSQIENEYEPEREEFGSAGEAYMKWAAEMAVELNTEVPWVMCKEEDAPDPVINTCNGFYC-HSFS-PNKPSKPKMWTE 252 (711)
Q Consensus 175 II~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~p~~P~~~tE 252 (711)
|||+|||||||.+...+++.++.|++|.+.++...+.++||++|.+.++|+.++++||+.+| +.|. +++|++|+||||
T Consensus 166 IIl~QIENEYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE 245 (649)
T KOG0496|consen 166 IILVQIENEYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTE 245 (649)
T ss_pred EEEEEeechhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecc
Confidence 99999999999877777788999999999999999999999999999999999999999999 8887 899999999999
Q ss_pred cccccccCcCCCCCcCCHHHHHHHHHHHHHhCCeeeeeeEEeccCCCCCCCCCCcccCCCCCCCCCCcCCCCCchhhHHH
Q 005160 253 AWTGWFSDFGGQNYQRPVEDLAFAVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLIREPKYGHL 332 (711)
Q Consensus 253 ~~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDy~Apl~E~G~~~~pky~~l 332 (711)
+|+|||++||++++.|++++++..+++++++|+|++||||||||||||++|| ++.+|||||||||| |..++|||.++
T Consensus 246 ~wtgwf~~wGg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghl 322 (649)
T KOG0496|consen 246 NWTGWFTHWGGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHL 322 (649)
T ss_pred cccchhhhhCCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCcccc
Confidence 9999999999999999999999999999999999999999999999999998 99999999999999 99999999999
Q ss_pred HHHHHHHHhhhhccccCCCccccCCCccceeeeccCccceeeeecccccccceEEEecCccccCCCCceeecCCCccccc
Q 005160 333 KKLHKAIKLCENALLTANSTVTSLGNYEEAHVFSSESGQCAAFLSNYHTESAARVTFNNKQYNLPPWSISILPDCKNIIF 412 (711)
Q Consensus 333 r~l~~~~~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~~~~~s~~i~~~~~~~~~ 412 (711)
|.+|..+..+++.+...++..+.+|+. .+.|+.|+.|++......+.|++.++.+|.++++|+|||++++|
T Consensus 323 k~~hts~d~~ep~lv~gd~~~~kyg~~---------~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~ 393 (649)
T KOG0496|consen 323 KPLHTSYDYCEPALVAGDITTAKYGNL---------REACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVY 393 (649)
T ss_pred ccchhhhhhcCccccccCcccccccch---------hhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhh
Confidence 999999999999888777665444433 34599999999998999999999999999999999999999999
Q ss_pred cccccccccccccCCCCcccccccccccCCCCCCccEEEEEEEecCCCCCcccCCCCCCeeeeC-CcceEEEEEECCEEE
Q 005160 413 NTANTFNEDVFSLEDDSTITTVGLLEQLNVTRDTSDYLWCSTSVNISSSDSFLHGGERPTLSVQ-SRGHALHVFVNGQLT 491 (711)
Q Consensus 413 ~t~~~~~~~~~~~~~~~p~~~~~~mEql~~t~d~~gy~~Y~t~i~~~~~~~~~~~g~~~~L~i~-~~~D~~~vfvng~~v 491 (711)
+|++....... ... |.++|..++ .+||++|+|.++.+.++. ..|+|. +++|++||||||+++
T Consensus 394 nta~~~~~~~~---~~e----~~~~~~~~~---~~~~ll~~~~~t~d~sd~-------t~~~i~ls~g~~~hVfvNg~~~ 456 (649)
T KOG0496|consen 394 NTAKVMAQWIS---FTE----PIPSEAVGQ---SFGGLLEQTNLTKDKSDT-------TSLKIPLSLGHALHVFVNGEFA 456 (649)
T ss_pred hcccccccccc---ccC----CCccccccC---cceEEEEEEeeccccCCC-------ceEeecccccceEEEEECCEEe
Confidence 99974332111 122 344788866 789999999998665441 357888 999999999999999
Q ss_pred EEEeCcccceeeEEEeeeeccCCccEEEEEEecCCccccccCCCccccceeccEEEccccCCcccCCcCCceEEecCcch
Q 005160 492 GSASGTRTYKRFTFRGNVNLHAGVNTISLLSIAVGLPNNGPHFESYKTGVLGPVVLHGIDEGKRDLSWHKWSYKIGLQGE 571 (711)
Q Consensus 492 G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~~~~~~kGI~G~V~l~g~~~~~~~L~~~~W~~~~~l~ge 571 (711)
|+++++.....+.+..++.|..|.|+|+|||||+||+||| +++++.|||+|+|+|+|+ ++++++.|.|+++|.+|
T Consensus 457 G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~~w~~~~gl~ge 531 (649)
T KOG0496|consen 457 GSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTWTKWPYKVGLKGE 531 (649)
T ss_pred eeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----eccceeecceecccccc
Confidence 9999987667778888888999999999999999999999 889999999999999997 47887889999999999
Q ss_pred hhccccCCCCCCcccccccCCcccccCCCceEEEEEEeCCCCCCceEEeeCCCceEEEEECCeeeeeeecccccCCccCC
Q 005160 572 AMVTGLGSQSSNLVVSWVPSSLEHKKQQPLTWYKAYFDAPEGDEPLAMDMSSMNKGQVLINGQNIGRYWTAIANGACRNC 651 (711)
Q Consensus 572 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~yk~~F~~p~~~d~t~Ld~~g~gKG~v~VNG~nlGRYW~~~~~G~~~~~ 651 (711)
.+. ++.+++.++++|......+. .+|.+||+ +|++|++.+||||||.|||||+|||||+|||||||+
T Consensus 532 ~~~--~~~~~~~~~v~w~~~~~~~~-k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~~--------- 598 (649)
T KOG0496|consen 532 KLG--LHTEEGSSKVKWKKLSNTAT-KQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWPS--------- 598 (649)
T ss_pred hhh--ccccccccccceeeccCccc-CCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccCC---------
Confidence 988 88777778899987655444 37889999 999999999999999999999999999999999986
Q ss_pred ccCCCCCCCCCCCCCCCCeeeeeecCccccCCCCcEEEEEEeecCCCCceEEEEEecc
Q 005160 652 NYTGTYRPTNCGFDCGKPSQQWYHVPRSWLKPRQNLLIVFEEISGDASKISLVKRLVT 709 (711)
Q Consensus 652 ~~~G~y~~~~~~~~~~~PQqtlYhvP~~~Lk~g~N~IvvfE~~~~~p~~i~~~~~~~~ 709 (711)
+| ||++|| ||++|||++.|.||||||++++|..|+|+++++.
T Consensus 599 --~G-------------~Q~~yh-vPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~~ 640 (649)
T KOG0496|consen 599 --FG-------------PQRTYH-VPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPVL 640 (649)
T ss_pred --CC-------------CceEEE-CcHHHhCcCCceEEEEEeccCCCccceEEEeEee
Confidence 34 877765 9999999999999999999999999999998764
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=6.7e-88 Score=723.22 Aligned_cols=297 Identities=43% Similarity=0.830 Sum_probs=229.4
Q ss_pred cEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEE
Q 005160 33 ALIINGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVH 112 (711)
Q Consensus 33 ~f~~dGkp~~~~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi 112 (711)
+|+|||||++|+|||+||+|+|+++|+|+|+||||+|||||+|||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccCcccccC
Q 005160 113 LRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEFG 192 (711)
Q Consensus 113 lr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 192 (711)
|||||||||||++||+|.||.+++++++|++|+.|+++|++|+++|+++++ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 7889999999999999999953
Q ss_pred chhHHHHHHHHHHHHHcCCC-cceeecCCC--------CCCcccccCCCCccccc--------CCCCCCCCCceeeeccc
Q 005160 193 SAGEAYMKWAAEMAVELNTE-VPWVMCKEE--------DAPDPVINTCNGFYCHS--------FSPNKPSKPKMWTEAWT 255 (711)
Q Consensus 193 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~--------~~~~~~~~~~~~~~~~~--------~~~~~p~~P~~~tE~~~ 255 (711)
.++++||+.|++++++.+++ ++.++++.. +++...+.++..+.|.. ..+.+|++|+|++|+|+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 37899999999999999988 556777642 12322233333334421 12456889999999999
Q ss_pred ccccCcCCCCCcCCHHHHHHHHHHHHHhCCeeeeeeEEeccCCCCCCCCCCcc----cCCCCCCCCCCcCCCCCchhhHH
Q 005160 256 GWFSDFGGQNYQRPVEDLAFAVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFI----TTSYDYDAPIDEYGLIREPKYGH 331 (711)
Q Consensus 256 Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~----~TSYDy~Apl~E~G~~~~pky~~ 331 (711)
|||++||++++.+++++++..+.+++.+|.+ +||||||||||||+++|++.. +|||||+|||+|+|++ +|||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999965 799999999999999887654 5999999999999999 599999
Q ss_pred HHHHHHH
Q 005160 332 LKKLHKA 338 (711)
Q Consensus 332 lr~l~~~ 338 (711)
+|+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999875
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.9e-38 Score=358.20 Aligned_cols=289 Identities=23% Similarity=0.332 Sum_probs=212.5
Q ss_pred EEEcCCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEE-cccCCcCCCCCCceeecccchHHHHHHHHH
Q 005160 27 VTYDSKALIINGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDT-YVFWNVHEPSPGNYNFEGRYDLVRFIKLVQ 105 (711)
Q Consensus 27 v~~d~~~f~~dGkp~~~~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~-yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~ 105 (711)
|.+++..+++||+|++++||++||+|+|++.|.+||+|||++|+|+|++ |+.||.|||++|+|||+ .+|++ ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3567889999999999999999999999999999999999999999999 99999999999999999 88888 999999
Q ss_pred HcCCEEEEecCc-ccccccCCCCCCcEeeecCCeee---------ccCChhHHHHHHHHHHHHHHHhhhccccccCCCce
Q 005160 106 KAGLYVHLRIGP-YICAEWNFGGFPVWLKFVQGISF---------RTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPI 175 (711)
Q Consensus 106 ~~GL~vilr~GP-yicaEw~~GG~P~WL~~~p~~~~---------R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpI 175 (711)
+.||+||||||| ..|.+|..+++|.||..++.-.. ..+++.|++++++.++.|.+++ +++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 99999999999999987665222 2456778888887554444442 5789999
Q ss_pred EEeccccCccCcccccCchhHHHHHHHHHHHHHc-CCCcceeecC-CCCCCc-ccccCCC-Ccc----c--ccCCCCCCC
Q 005160 176 ILSQIENEYEPEREEFGSAGEAYMKWAAEMAVEL-NTEVPWVMCK-EEDAPD-PVINTCN-GFY----C--HSFSPNKPS 245 (711)
Q Consensus 176 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~-~~~~~~-~~~~~~~-~~~----~--~~~~~~~p~ 245 (711)
|+||++||||++.|.++.|.+.+..||++.+-.+ ..+.+|=+.- ..+..+ ..|.+.+ ... . -+|......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999976666778888999999877322 1222331111 000000 0111111 000 0 012222222
Q ss_pred C----Cceeeecccccc-cCcCCCCCcCC-HHHHHHHHHHHHHhCCeeeeeeEEeccCCCC------CCCCCC---c---
Q 005160 246 K----PKMWTEAWTGWF-SDFGGQNYQRP-VEDLAFAVARFIQKGGSFVNYYMYHGGTNFG------RTAGGP---F--- 307 (711)
Q Consensus 246 ~----P~~~tE~~~Gwf-~~wG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~Ga~---~--- 307 (711)
+ +....|.+-+|| +.|..+.-... .+.-.+.+.+.|..... -||||+|+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 2 444566677888 66766443333 22334556666666666 6999999999999 777664 2
Q ss_pred ----ccCCCCCCCCCCcCCCC
Q 005160 308 ----ITTSYDYDAPIDEYGLI 324 (711)
Q Consensus 308 ----~~TSYDy~Apl~E~G~~ 324 (711)
..|++++.+.+.+.|..
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred cCCcchhhhhhccCCCCCccc
Confidence 48999999999999994
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.84 E-value=1.5e-20 Score=207.07 Aligned_cols=263 Identities=22% Similarity=0.316 Sum_probs=159.8
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEE-cccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCC
Q 005160 48 IHYPRSSHEMWEGLIQKAKDGGLDVIDT-YVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFG 126 (711)
Q Consensus 48 ~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~-yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~G 126 (711)
+++..+|++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|||+.. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4567789999999999999999999996 57799999999999999 899999999999999999974 56
Q ss_pred CCCcEeee-cCCeee----------------ccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccCccc
Q 005160 127 GFPVWLKF-VQGISF----------------RTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPERE 189 (711)
Q Consensus 127 G~P~WL~~-~p~~~~----------------R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~ 189 (711)
..|.||.+ .|++.. ..++|.|++++++++++++++++++ +.||+|||+||++...+
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~-------p~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDH-------PAVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTT-------TTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcccc-------ceEEEEEeccccCcCcC
Confidence 68999975 566422 2457889999999999999988854 47999999999987433
Q ss_pred ccCchhHHHHHHHHHHHHHc-------CC-------------CcceeecCCC------C---------------------
Q 005160 190 EFGSAGEAYMKWAAEMAVEL-------NT-------------EVPWVMCKEE------D--------------------- 222 (711)
Q Consensus 190 ~~~~~~~~y~~~l~~~~~~~-------g~-------------~vp~~~~~~~------~--------------------- 222 (711)
.+..+.++|.+||++++... |. ..|..+.... |
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446677888888877421 11 0121111000 0
Q ss_pred --CCcccccCCC--Cc------------ccc-----cC----------------------CCCCCCCCceeeeccccccc
Q 005160 223 --APDPVINTCN--GF------------YCH-----SF----------------------SPNKPSKPKMWTEAWTGWFS 259 (711)
Q Consensus 223 --~~~~~~~~~~--~~------------~~~-----~~----------------------~~~~p~~P~~~tE~~~Gwf~ 259 (711)
.|+-.+ +.| +. .+| .+ +...+++|.+++|..+| -.
T Consensus 224 ~~~p~~~v-t~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~ 301 (374)
T PF02449_consen 224 EYDPDHPV-TTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PV 301 (374)
T ss_dssp HHSTT-EE-E-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---
T ss_pred HhCCCceE-EeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CC
Confidence 000000 000 00 000 00 01247899999999998 55
Q ss_pred CcCCCCCcCCHHHHHHHHHHHHHhCCeeeeeeEEeccCCCCCCCCCCcccCCCCCCCCCCcCC-CCCchhhHHHHHHHHH
Q 005160 260 DFGGQNYQRPVEDLAFAVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYG-LIREPKYGHLKKLHKA 338 (711)
Q Consensus 260 ~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDy~Apl~E~G-~~~~pky~~lr~l~~~ 338 (711)
.|+.......+..+...+.+.++.|+..+.|+-+ ....+|.-. | ..+-|+-+| .+ +++|.+++++.+.
T Consensus 302 ~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~--------~-~~g~~~~dg~~~-~~~~~e~~~~~~~ 370 (374)
T PF02449_consen 302 NWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQ--------F-HGGLVDHDGREP-TRRYREVAQLGRE 370 (374)
T ss_dssp SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTT--------T-S--SB-TTS--B--HHHHHHHHHHHH
T ss_pred CCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchh--------h-hcccCCccCCCC-CcHHHHHHHHHHH
Confidence 5765544555677888888889999998777655 222333221 0 236678888 55 7899999999887
Q ss_pred HHh
Q 005160 339 IKL 341 (711)
Q Consensus 339 ~~~ 341 (711)
|+.
T Consensus 371 l~~ 373 (374)
T PF02449_consen 371 LKK 373 (374)
T ss_dssp HHT
T ss_pred Hhc
Confidence 753
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.53 E-value=4.4e-13 Score=143.31 Aligned_cols=192 Identities=21% Similarity=0.311 Sum_probs=125.1
Q ss_pred EEEcCCcEEECCEEeEEEEEEecCCC------CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHH
Q 005160 27 VTYDSKALIINGQRRILFSGSIHYPR------SSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRF 100 (711)
Q Consensus 27 v~~d~~~f~~dGkp~~~~sg~~Hy~r------~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~f 100 (711)
|.+.++.|+|||||+++.+...|... ++++.|+++|++||++|+|+|++ .++.+.| +|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~----~h~p~~~------------~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT----HHYPPSP------------RF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE----TTS--SH------------HH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc----ccccCcH------------HH
Confidence 67899999999999999999999732 58999999999999999999999 3333334 89
Q ss_pred HHHHHHcCCEEEEecCcccccccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEecc
Q 005160 101 IKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQI 180 (711)
Q Consensus 101 l~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Qi 180 (711)
+++|.++||.|+..+.=.-++.|..-|.. .....|+.+.+.+.+-+++++.+.+ |++.||||-+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~-------NHPSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGNC---------NYDADDPEFRENAEQELREMVRRDR-------NHPSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSCT---------SCTTTSGGHHHHHHHHHHHHHHHHT-------T-TTEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCcc---------ccCCCCHHHHHHHHHHHHHHHHcCc-------CcCchheeec
Confidence 99999999999987621112233221111 2456788898888888888877776 4569999999
Q ss_pred ccCccCcccccCchhHHHHHHHHHHHHHcCCCcceeecCCC--CCCcccc-cCCCCccc-----ccCC----C--CCCCC
Q 005160 181 ENEYEPEREEFGSAGEAYMKWAAEMAVELNTEVPWVMCKEE--DAPDPVI-NTCNGFYC-----HSFS----P--NKPSK 246 (711)
Q Consensus 181 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~--~~~~~~~-~~~~~~~~-----~~~~----~--~~p~~ 246 (711)
.||-. ...+++.|.+++++.+.+.|+...... ...+... +...+.+. +.+. . ..+++
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 99982 356889999999999999986543331 0111111 11111110 0111 1 35789
Q ss_pred Cceeeeccccccc
Q 005160 247 PKMWTEAWTGWFS 259 (711)
Q Consensus 247 P~~~tE~~~Gwf~ 259 (711)
|++.+||....+.
T Consensus 200 P~i~sEyg~~~~~ 212 (298)
T PF02836_consen 200 PIIISEYGADAYN 212 (298)
T ss_dssp -EEEEEESEBBSS
T ss_pred CeEehhccccccc
Confidence 9999999765544
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.40 E-value=4.5e-11 Score=139.84 Aligned_cols=159 Identities=16% Similarity=0.090 Sum_probs=112.5
Q ss_pred eeEEEcCCcEEECCEEeEEEEEEecCC------CCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHH
Q 005160 25 SSVTYDSKALIINGQRRILFSGSIHYP------RSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLV 98 (711)
Q Consensus 25 ~~v~~d~~~f~~dGkp~~~~sg~~Hy~------r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~ 98 (711)
.+|+++++.|+|||||+++.+...|.. .++++.|+.+|+.||++|+|+|++ .+..+.|
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~----sh~p~~~------------ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT----SHYPYSE------------ 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe----ccCCCCH------------
Confidence 678899999999999999999999863 257889999999999999999999 3333233
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCCCCcEee-------e-cCCeeeccCChhHHHHHHHHHHHHHHHhhhcccccc
Q 005160 99 RFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLK-------F-VQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKS 170 (711)
Q Consensus 99 ~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~-------~-~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~ 170 (711)
+|+++|.++||+|+.... . -|+..|.. . .+....-..+|.+.++..+-+++++.+. .
T Consensus 340 ~~~~~cD~~GllV~~E~p-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~-------~ 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-A-------VGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARD-------K 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc-c-------ccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhc-------c
Confidence 899999999999998752 1 11111211 0 1111111234555555554455544443 4
Q ss_pred CCCceEEeccccCccCcccccCchhHHHHHHHHHHHHHcCCCcceeec
Q 005160 171 QGGPIILSQIENEYEPEREEFGSAGEAYMKWAAEMAVELNTEVPWVMC 218 (711)
Q Consensus 171 ~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 218 (711)
|++.||||.+.||.... ......+++.|.+.+|+++.+.|+..+
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 67799999999997541 123467889999999999999886543
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.32 E-value=1.5e-10 Score=142.22 Aligned_cols=260 Identities=18% Similarity=0.199 Sum_probs=155.0
Q ss_pred eeEEEcCCcEEECCEEeEEEEEEecCC------CCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHH
Q 005160 25 SSVTYDSKALIINGQRRILFSGSIHYP------RSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLV 98 (711)
Q Consensus 25 ~~v~~d~~~f~~dGkp~~~~sg~~Hy~------r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~ 98 (711)
.+|+++++.|+|||||+++.+...|.. .++++.|+++|+.||++|+|+|++ .+..+.|
T Consensus 318 R~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~----sHyP~~~------------ 381 (1021)
T PRK10340 318 RDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT----AHYPNDP------------ 381 (1021)
T ss_pred EEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------
Confidence 567888999999999999999998842 258899999999999999999999 4444455
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEe
Q 005160 99 RFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILS 178 (711)
Q Consensus 99 ~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~ 178 (711)
+|+++|.++||+|+-.. |..|..|...+ +...-+++|.+.++.. +++.+++++ .+|++.||||
T Consensus 382 ~fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~~~---~~~~~mV~R----drNHPSIi~W 444 (1021)
T PRK10340 382 RFYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKVYV---DRIVRHIHA----QKNHPSIIIW 444 (1021)
T ss_pred HHHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHHHH---HHHHHHHHh----CCCCCEEEEE
Confidence 89999999999999875 33332222111 0011235666654433 334444442 3577899999
Q ss_pred ccccCccCcccccCchhHHHHHHHHHHHHHcCCCcceeecCCCCCCcccccCCCCccc-----ccCCCCCCCCCceeeec
Q 005160 179 QIENEYEPEREEFGSAGEAYMKWAAEMAVELNTEVPWVMCKEEDAPDPVINTCNGFYC-----HSFSPNKPSKPKMWTEA 253 (711)
Q Consensus 179 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~~P~~~tE~ 253 (711)
.+.||-+. + . .++.+.+.+|+++.+.|+. +.+.... ...+...-.|. ..+....+++|++.+|+
T Consensus 445 slGNE~~~-----g---~-~~~~~~~~~k~~DptR~v~-~~~~~~~-~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey 513 (1021)
T PRK10340 445 SLGNESGY-----G---C-NIRAMYHAAKALDDTRLVH-YEEDRDA-EVVDVISTMYTRVELMNEFGEYPHPKPRILCEY 513 (1021)
T ss_pred ECccCccc-----c---H-HHHHHHHHHHHhCCCceEE-eCCCcCc-cccceeccccCCHHHHHHHHhCCCCCcEEEEch
Confidence 99999764 2 1 2467888899999988763 3322111 11121111121 22233446799999998
Q ss_pred ccccccCcCCCCCcCCHHHHHHHH-----------HHHHHhCCe----eeeeeEEeccCCCCCCCCCCcccCCCCCCCCC
Q 005160 254 WTGWFSDFGGQNYQRPVEDLAFAV-----------ARFIQKGGS----FVNYYMYHGGTNFGRTAGGPFITTSYDYDAPI 318 (711)
Q Consensus 254 ~~Gwf~~wG~~~~~~~~~~~~~~~-----------~~~l~~g~s----~~n~YM~hGGTNfG~~~Ga~~~~TSYDy~Apl 318 (711)
-.+. |... ...++.-..+ +.++..|.. ...-|+.+||- ||-+. -..++--+.-+
T Consensus 514 ~ham----gn~~--g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd-~g~~p----~~~~f~~~Glv 582 (1021)
T PRK10340 514 AHAM----GNGP--GGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGD-YGDYP----NNYNFCIDGLI 582 (1021)
T ss_pred Hhcc----CCCC--CCHHHHHHHHHhCCceeEEeeeecCcccccccCCCCCEEEEECCC-CCCCC----CCcCcccceeE
Confidence 5322 2100 0112221111 111111100 00134556653 54321 01223334678
Q ss_pred CcCCCCCchhhHHHHHHHHHHH
Q 005160 319 DEYGLIREPKYGHLKKLHKAIK 340 (711)
Q Consensus 319 ~E~G~~~~pky~~lr~l~~~~~ 340 (711)
+.++.+ .|.+.+.|.+.+-++
T Consensus 583 ~~dr~p-~p~~~e~k~~~~pv~ 603 (1021)
T PRK10340 583 YPDQTP-GPGLKEYKQVIAPVK 603 (1021)
T ss_pred CCCCCC-ChhHHHHHHhcceEE
Confidence 888988 699999998866443
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.28 E-value=3.7e-10 Score=138.51 Aligned_cols=150 Identities=17% Similarity=0.149 Sum_probs=109.5
Q ss_pred eeEEEcCCcEEECCEEeEEEEEEecCC------CCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHH
Q 005160 25 SSVTYDSKALIINGQRRILFSGSIHYP------RSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLV 98 (711)
Q Consensus 25 ~~v~~d~~~f~~dGkp~~~~sg~~Hy~------r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~ 98 (711)
.+|+++++.|+|||||+++.+...|.. +++++.++++|+.||++|+|+|++ .++.+.|
T Consensus 334 R~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~----sHyP~~p------------ 397 (1027)
T PRK09525 334 RKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC----SHYPNHP------------ 397 (1027)
T ss_pred EEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------
Confidence 567888899999999999999999842 468999999999999999999999 4555455
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEe
Q 005160 99 RFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILS 178 (711)
Q Consensus 99 ~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~ 178 (711)
+|+++|.++||+|+-...=..|+-+ |.. .-.+||.|.+++. +++.+++++ .+|++.||||
T Consensus 398 ~fydlcDe~GilV~dE~~~e~hg~~-----~~~--------~~~~dp~~~~~~~---~~~~~mV~R----drNHPSIi~W 457 (1027)
T PRK09525 398 LWYELCDRYGLYVVDEANIETHGMV-----PMN--------RLSDDPRWLPAMS---ERVTRMVQR----DRNHPSIIIW 457 (1027)
T ss_pred HHHHHHHHcCCEEEEecCccccCCc-----ccc--------CCCCCHHHHHHHH---HHHHHHHHh----CCCCCEEEEE
Confidence 8999999999999988531111111 110 0135677766554 444444442 2577899999
Q ss_pred ccccCccCcccccCchhHHHHHHHHHHHHHcCCCcceeecC
Q 005160 179 QIENEYEPEREEFGSAGEAYMKWAAEMAVELNTEVPWVMCK 219 (711)
Q Consensus 179 QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 219 (711)
.+.||-+. + ...+.+.+.+|+++.+.|+....
T Consensus 458 SlgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~~ 489 (1027)
T PRK09525 458 SLGNESGH-----G----ANHDALYRWIKSNDPSRPVQYEG 489 (1027)
T ss_pred eCccCCCc-----C----hhHHHHHHHHHhhCCCCcEEECC
Confidence 99999764 1 12466778888899998875543
No 10
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=99.08 E-value=2.6e-09 Score=114.17 Aligned_cols=240 Identities=21% Similarity=0.283 Sum_probs=132.2
Q ss_pred CCcEE-ECCEEeEEEEEEecC--CCCCHhHHHHHHHHHHHCCCCEEEEccc--CCcC-C-------C----CCCceeecc
Q 005160 31 SKALI-INGQRRILFSGSIHY--PRSSHEMWEGLIQKAKDGGLDVIDTYVF--WNVH-E-------P----SPGNYNFEG 93 (711)
Q Consensus 31 ~~~f~-~dGkp~~~~sg~~Hy--~r~~~~~W~~~l~k~Ka~G~NtV~~yv~--Wn~h-E-------p----~~G~ydF~g 93 (711)
++.|. -||+||++++-.++- .|...++|+..|+..|+.|||+|++-|+ |.-+ . | .++.+||+.
T Consensus 2 ~r~f~~~dG~Pff~lgdT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~ 81 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLGDTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTR 81 (289)
T ss_dssp SSSEEETTS-B--EEEEE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT
T ss_pred CceEecCCCCEEeehhHHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCC
Confidence 46677 799999999988774 5688999999999999999999999876 4321 1 1 122378876
Q ss_pred cc-----hHHHHHHHHHHcCCEEEEec---CcccccccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhc
Q 005160 94 RY-----DLVRFIKLVQKAGLYVHLRI---GPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDE 165 (711)
Q Consensus 94 ~~-----dl~~fl~la~~~GL~vilr~---GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~ 165 (711)
.+ .|++.|+.|.++||.+.|-| +||.-+-|..| + +..=.+..++|.+.|+++++..
T Consensus 82 ~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~---------~-------~~m~~e~~~~Y~~yv~~Ry~~~ 145 (289)
T PF13204_consen 82 PNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG---------P-------NIMPPENAERYGRYVVARYGAY 145 (289)
T ss_dssp ----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH----------------T-------TSS-HHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc---------c-------cCCCHHHHHHHHHHHHHHHhcC
Confidence 53 89999999999999986654 23322233222 1 1122478899999999999954
Q ss_pred cccccCCCceEEeccccCccCcccccCchhHHHHHHHHHHHHHcCCCcc-eeecCCC-CCCc-----ccccC---CCCcc
Q 005160 166 KLFKSQGGPIILSQIENEYEPEREEFGSAGEAYMKWAAEMAVELNTEVP-WVMCKEE-DAPD-----PVINT---CNGFY 235 (711)
Q Consensus 166 ~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp-~~~~~~~-~~~~-----~~~~~---~~~~~ 235 (711)
+ +|| |-+.||+ . ......++.+.+.+.+++.+..-+ .+|..+. ..++ +-++. ..|-.
T Consensus 146 ~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh~ 212 (289)
T PF13204_consen 146 P-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGHN 212 (289)
T ss_dssp S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S-
T ss_pred C-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCCC
Confidence 3 344 7799999 1 123667888899999998776444 3444432 1111 00111 11110
Q ss_pred c------c----cCC-CCCCCCCceeeec-ccccccCcCCCCCcCCHHHHHHHHHHHHHhCCeeeeeeEEeccCCC
Q 005160 236 C------H----SFS-PNKPSKPKMWTEA-WTGWFSDFGGQNYQRPVEDLAFAVARFIQKGGSFVNYYMYHGGTNF 299 (711)
Q Consensus 236 ~------~----~~~-~~~p~~P~~~tE~-~~Gwf~~wG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNf 299 (711)
. . ... +..|.||.++.|. |.|-...+.......++++++..+.+.+.+|+.+.=.|-.||-.+|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa~aG~tYG~~~iW~~ 288 (289)
T PF13204_consen 213 RYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGAYAGHTYGAHGIWQW 288 (289)
T ss_dssp -TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT--SEEEE-BHHHHTT
T ss_pred cccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCCCccccCCCCCcccC
Confidence 0 0 111 5578999999997 6665444332333458899999999999999955567888887665
No 11
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=3.4e-09 Score=126.12 Aligned_cols=120 Identities=20% Similarity=0.281 Sum_probs=96.5
Q ss_pred eeEEEcCCcEEECCEEeEEEEEEecCCC-----C-CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHH
Q 005160 25 SSVTYDSKALIINGQRRILFSGSIHYPR-----S-SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLV 98 (711)
Q Consensus 25 ~~v~~d~~~f~~dGkp~~~~sg~~Hy~r-----~-~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~ 98 (711)
.+|+++...|.|||||+++-+..-|.+- . ..+.-+++|++||++|+|+|+| . |=|+. .
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt----s-HyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT----S-HYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe----c-CCCCC-----------H
Confidence 6789999999999999999999999743 3 5555999999999999999999 3 55543 3
Q ss_pred HHHHHHHHcCCEEEEecCcccccccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEe
Q 005160 99 RFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILS 178 (711)
Q Consensus 99 ~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~ 178 (711)
+|+++|.++||+||-.+ ..||-. .| +|+.+++.+..=+++++++.+ |++.||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~k-------nHPSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDR-------NHPSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhcc-------CCCcEEEE
Confidence 99999999999999886 223322 11 778888888777777777666 45699999
Q ss_pred ccccCccC
Q 005160 179 QIENEYEP 186 (711)
Q Consensus 179 QiENEyg~ 186 (711)
.+.||-|.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999875
No 12
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.95 E-value=1.7e-09 Score=99.46 Aligned_cols=68 Identities=29% Similarity=0.663 Sum_probs=50.1
Q ss_pred CCCceEEEEEEeCCCCCC-ceE-Ee--eCCCceEEEEECCeeeeeeecccccCCccCCccCCCCCCCCCCCCCCCCeeee
Q 005160 598 QQPLTWYKAYFDAPEGDE-PLA-MD--MSSMNKGQVLINGQNIGRYWTAIANGACRNCNYTGTYRPTNCGFDCGKPSQQW 673 (711)
Q Consensus 598 ~~~~~~yk~~F~~p~~~d-~t~-Ld--~~g~gKG~v~VNG~nlGRYW~~~~~G~~~~~~~~G~y~~~~~~~~~~~PQqtl 673 (711)
..+..|||++|+.- +.+ .+. |+ .....+++|||||++|||||+. +| ||+++
T Consensus 33 ~~g~~~Yrg~F~~~-~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~-----------~g-------------~q~tf 87 (111)
T PF13364_consen 33 HAGYLWYRGTFTGT-GQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG-----------IG-------------PQTTF 87 (111)
T ss_dssp SSCEEEEEEEEETT-TEEEEEE-EEECSSTTEEEEEEETTEEEEEEETT-----------TE-------------CCEEE
T ss_pred CCCCEEEEEEEeCC-CcceeEEEEeccCCCceEEEEEECCEEeeeecCC-----------CC-------------ccEEE
Confidence 45789999999642 122 123 33 3567899999999999999954 45 99999
Q ss_pred eecCccccCCCCcEEEEE
Q 005160 674 YHVPRSWLKPRQNLLIVF 691 (711)
Q Consensus 674 YhvP~~~Lk~g~N~Ivvf 691 (711)
+ ||+.+|+.++|.|+|+
T Consensus 88 ~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 88 S-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp E-E-BTTBTTCEEEEEEE
T ss_pred E-eCceeecCCCEEEEEE
Confidence 8 9999999876665555
No 13
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.90 E-value=2e-08 Score=105.02 Aligned_cols=160 Identities=19% Similarity=0.268 Sum_probs=110.1
Q ss_pred ECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCC-CCCCc-eeecccchHHHHHHHHHHcCCEEEE
Q 005160 36 INGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHE-PSPGN-YNFEGRYDLVRFIKLVQKAGLYVHL 113 (711)
Q Consensus 36 ~dGkp~~~~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hE-p~~G~-ydF~g~~dl~~fl~la~~~GL~vil 113 (711)
.+|+++.+.+-+.|.... ..-++.+++||++|+|+||+.|.|.... +.|+. ++=+....|+++|+.|+++||+|||
T Consensus 3 ~~G~~v~~~G~n~~w~~~--~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYNP--SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp TTSEBEEEEEEEETTSGG--GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCeEEeeeeecccCCC--CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 379999999999994221 2678899999999999999999995444 67664 6656667999999999999999998
Q ss_pred ecCcccccccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccCcccc--c
Q 005160 114 RIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREE--F 191 (711)
Q Consensus 114 r~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~--~ 191 (711)
.+ ++. |.|...... -...+...+...++++.|++++++ ..+|++++|=||....... .
T Consensus 81 d~----h~~------~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w 140 (281)
T PF00150_consen 81 DL----HNA------PGWANGGDG---YGNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANW 140 (281)
T ss_dssp EE----EES------TTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTT
T ss_pred Ee----ccC------ccccccccc---cccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCcccc
Confidence 75 211 566322111 112233444555566667776653 3479999999999763210 0
Q ss_pred ----CchhHHHHHHHHHHHHHcCCCcceee
Q 005160 192 ----GSAGEAYMKWAAEMAVELNTEVPWVM 217 (711)
Q Consensus 192 ----~~~~~~y~~~l~~~~~~~g~~vp~~~ 217 (711)
...=.++++.+.+.+|+.+.+.+++.
T Consensus 141 ~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~ 170 (281)
T PF00150_consen 141 NAQNPADWQDWYQRAIDAIRAADPNHLIIV 170 (281)
T ss_dssp SHHHTHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred ccccchhhhhHHHHHHHHHHhcCCcceeec
Confidence 01114577778888888888876654
No 14
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.40 E-value=1.5e-06 Score=80.00 Aligned_cols=84 Identities=24% Similarity=0.246 Sum_probs=56.1
Q ss_pred ccccCCCCCCccEEEEEEEecCCCCCcccCCCCCCe-eeeC-CcceEEEEEECCEEEEEEeCcccceeeEEEeee-eccC
Q 005160 437 LEQLNVTRDTSDYLWCSTSVNISSSDSFLHGGERPT-LSVQ-SRGHALHVFVNGQLTGSASGTRTYKRFTFRGNV-NLHA 513 (711)
Q Consensus 437 mEql~~t~d~~gy~~Y~t~i~~~~~~~~~~~g~~~~-L~i~-~~~D~~~vfvng~~vG~~~~~~~~~~~~~~~~~-~l~~ 513 (711)
.+..+..++..|++|||+++.....+. ... |.+. +.+++++|||||+++|+.....+ ...+|+++. .|+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g-~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGIG-PQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTTE-CCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCCC-ccEEEEeCceeecC
Confidence 345555567899999999996533221 123 4443 78999999999999999873222 223444443 2555
Q ss_pred CccEEEEEEecCCc
Q 005160 514 GVNTISLLSIAVGL 527 (711)
Q Consensus 514 g~~~L~ILven~Gr 527 (711)
+.++|.+|+.+||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67789999999996
No 15
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.15 E-value=1.2e-05 Score=78.37 Aligned_cols=98 Identities=29% Similarity=0.365 Sum_probs=69.1
Q ss_pred CCCccEEEEEEEecCCCCCcccCCCCCCeeeeCCcceEEEEEECCEEEEEEeCcccceeeEEEeeeeccCCc-cEEEEEE
Q 005160 444 RDTSDYLWCSTSVNISSSDSFLHGGERPTLSVQSRGHALHVFVNGQLTGSASGTRTYKRFTFRGNVNLHAGV-NTISLLS 522 (711)
Q Consensus 444 ~d~~gy~~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~~~vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILv 522 (711)
....|++|||++|.++... .+.+..|.+.++.+.+.|||||++||...... ..+.+.++-.|+.|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEE
Confidence 4478999999999876432 24456789999999999999999999976543 345555555677887 9999999
Q ss_pred ecCCccccccCC-CccccceeccEEE
Q 005160 523 IAVGLPNNGPHF-ESYKTGVLGPVVL 547 (711)
Q Consensus 523 en~Gr~NyG~~~-~~~~kGI~G~V~l 547 (711)
.+...-.+-+.+ .-...||.++|.|
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L 163 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWL 163 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEE
Confidence 865543321111 1246899999987
No 16
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.10 E-value=4.8e-05 Score=81.19 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=86.3
Q ss_pred eeEEEcCCcEE--ECCEEeEEEEEEecCCC-----------CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceee
Q 005160 25 SSVTYDSKALI--INGQRRILFSGSIHYPR-----------SSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNF 91 (711)
Q Consensus 25 ~~v~~d~~~f~--~dGkp~~~~sg~~Hy~r-----------~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF 91 (711)
..|++.++.|. .+|++|+|.+-.+.+.- ..++.|++++..||++|+|||++|- ..|.
T Consensus 9 ~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~----vdp~------ 78 (314)
T PF03198_consen 9 PPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS----VDPS------ 78 (314)
T ss_dssp --EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TT------
T ss_pred CCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE----eCCC------
Confidence 56888899999 79999999998877622 2568999999999999999999973 2233
Q ss_pred cccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeeecCCeeeccCCh--hHHHHHHHHHHHHHHHhhhccccc
Q 005160 92 EGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNK--PFKHAMQNFTQKIVLMMKDEKLFK 169 (711)
Q Consensus 92 ~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~--~y~~~~~~~~~~l~~~~~~~~~~~ 169 (711)
.|=++++++.++.|+|||+-.+ .|...+...+| .|-...-.-+.++++.++.+
T Consensus 79 ---~nHd~CM~~~~~aGIYvi~Dl~------------------~p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y---- 133 (314)
T PF03198_consen 79 ---KNHDECMSAFADAGIYVILDLN------------------TPNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY---- 133 (314)
T ss_dssp ---S--HHHHHHHHHTT-EEEEES-------------------BTTBS--TTS------HHHHHHHHHHHHHHTT-----
T ss_pred ---CCHHHHHHHHHhCCCEEEEecC------------------CCCccccCCCCcCCCCHHHHHHHHHHHHHhccC----
Confidence 2677999999999999999864 12333444555 45433333344556667743
Q ss_pred cCCCceEEeccccCccCcccc--cCchhHHHHHHHHHHHHHcCC-Ccce
Q 005160 170 SQGGPIILSQIENEYEPEREE--FGSAGEAYMKWAAEMAVELNT-EVPW 215 (711)
Q Consensus 170 ~~gGpII~~QiENEyg~~~~~--~~~~~~~y~~~l~~~~~~~g~-~vp~ 215 (711)
.+++++-+.||--.-... -.+.-++..+-+|+-+++.+. .+|+
T Consensus 134 ---~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 ---DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp ---TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred ---CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 489999999998542110 012334555555555666554 4554
No 17
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.10 E-value=8.1e-06 Score=85.68 Aligned_cols=117 Identities=22% Similarity=0.384 Sum_probs=87.9
Q ss_pred CCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHH
Q 005160 79 WNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKI 158 (711)
Q Consensus 79 Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l 158 (711)
|...||++|+|||+ .++++++.|+++||.| |..+-+ |.. ..|.|+...+ .+..++++.+|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 88999999999999 8999999999999998 332222 433 6899986432 345678888899998
Q ss_pred HHHhhhccccccCCCceEEeccccCccCcc-------cccCchhHHHHHHHHHHHHHcCCCcceeecCC
Q 005160 159 VLMMKDEKLFKSQGGPIILSQIENEYEPER-------EEFGSAGEAYMKWAAEMAVELNTEVPWVMCKE 220 (711)
Q Consensus 159 ~~~~~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 220 (711)
+.+++ |.|..|+|=||--... ..+...+.+|+...-+.+++.++++.++.++-
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 88876 5688999999954311 00112345799999999999999988887653
No 18
>PLN02705 beta-amylase
Probab=97.71 E-value=0.00012 Score=83.29 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=64.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC-CCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCC-----C
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEP-SPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFG-----G 127 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~G-----G 127 (711)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++.++++++||++.+-.-=.-|+- +-| -
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGG-NVGD~~~IP 341 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGG-NASGNVMIS 341 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCC-CCCCccccc
Confidence 5677889999999999999999999999998 699999995 55779999999999654332244544 222 2
Q ss_pred CCcEeee----cCCee
Q 005160 128 FPVWLKF----VQGIS 139 (711)
Q Consensus 128 ~P~WL~~----~p~~~ 139 (711)
||.|+.. +|+|.
T Consensus 342 LP~WV~e~g~~nPDif 357 (681)
T PLN02705 342 LPQWVLEIGKDNQDIF 357 (681)
T ss_pred CCHHHHHhcccCCCce
Confidence 8999985 46764
No 19
>TIGR03356 BGL beta-galactosidase.
Probab=97.71 E-value=8.8e-05 Score=83.72 Aligned_cols=97 Identities=18% Similarity=0.180 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeee
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPS-PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKF 134 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~ 134 (711)
..|+++|++||++|+|++++-|.|...+|. +|++|.+|....+++|+.|.++||.+|+-.= .=.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 468999999999999999999999999999 7899988888999999999999999886641 1248999876
Q ss_pred cCCeeeccCChhHHHHHHHHHHHHHHHhhh
Q 005160 135 VQGISFRTDNKPFKHAMQNFTQKIVLMMKD 164 (711)
Q Consensus 135 ~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~ 164 (711)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5443 3466677777888888877774
No 20
>PLN02905 beta-amylase
Probab=97.67 E-value=0.00016 Score=82.55 Aligned_cols=82 Identities=21% Similarity=0.419 Sum_probs=63.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC-CCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCC-----C
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEP-SPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFG-----G 127 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~G-----G 127 (711)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| -.++.++++++||++..-.-=.-|+- +-| -
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG-NVGD~~~IP 359 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG-NVGDDVCIP 359 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4556788999999999999999999999998 799999995 56779999999999654432244443 112 3
Q ss_pred CCcEeee----cCCee
Q 005160 128 FPVWLKF----VQGIS 139 (711)
Q Consensus 128 ~P~WL~~----~p~~~ 139 (711)
||.|+.. +|++.
T Consensus 360 LP~WV~e~g~~nPDif 375 (702)
T PLN02905 360 LPHWVAEIGRSNPDIF 375 (702)
T ss_pred CCHHHHHhhhcCCCce
Confidence 8999985 46764
No 21
>PLN02801 beta-amylase
Probab=97.64 E-value=0.00019 Score=80.58 Aligned_cols=82 Identities=26% Similarity=0.500 Sum_probs=64.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC-CCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCC-----C
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEP-SPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFG-----G 127 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~G-----G 127 (711)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| -.++.++++++||++..-.-=.-|+- +-| -
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 110 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG-NVGDAVNIP 110 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 6677899999999999999999999999997 699999995 56779999999999654332234443 112 2
Q ss_pred CCcEeee----cCCee
Q 005160 128 FPVWLKF----VQGIS 139 (711)
Q Consensus 128 ~P~WL~~----~p~~~ 139 (711)
||.|+.+ +|++.
T Consensus 111 LP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 111 IPQWVRDVGDSDPDIF 126 (517)
T ss_pred CCHHHHHhhccCCCce
Confidence 8999985 46653
No 22
>PLN00197 beta-amylase; Provisional
Probab=97.64 E-value=0.00019 Score=81.11 Aligned_cols=82 Identities=26% Similarity=0.517 Sum_probs=64.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC-CCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCC-----C
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEP-SPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFG-----G 127 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~G-----G 127 (711)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| -.++.++++++||++..-.-=.-|+- +-| -
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG-NVGD~~~Ip 200 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG-NVGDSCTIP 200 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 5677899999999999999999999999998 799999995 55779999999999654432244443 112 2
Q ss_pred CCcEeee----cCCee
Q 005160 128 FPVWLKF----VQGIS 139 (711)
Q Consensus 128 ~P~WL~~----~p~~~ 139 (711)
||.|+.. +|++.
T Consensus 201 LP~WV~~~g~~dpDif 216 (573)
T PLN00197 201 LPKWVVEEVDKDPDLA 216 (573)
T ss_pred CCHHHHHhhccCCCce
Confidence 8999985 46764
No 23
>PLN02803 beta-amylase
Probab=97.55 E-value=0.00031 Score=79.28 Aligned_cols=83 Identities=22% Similarity=0.503 Sum_probs=64.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC-CCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCC-----C
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEP-SPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFG-----G 127 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~G-----G 127 (711)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| -.++.++++++||++..-.-=.-|+- +-| -
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 180 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIP 180 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4566788999999999999999999999998 599999995 56779999999999654432234443 112 2
Q ss_pred CCcEeee----cCCeee
Q 005160 128 FPVWLKF----VQGISF 140 (711)
Q Consensus 128 ~P~WL~~----~p~~~~ 140 (711)
||.|+.+ +|++.+
T Consensus 181 LP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVY 197 (548)
T ss_pred CCHHHHHhhhcCCCceE
Confidence 8999975 477643
No 24
>PLN02161 beta-amylase
Probab=97.54 E-value=0.00035 Score=78.45 Aligned_cols=84 Identities=20% Similarity=0.372 Sum_probs=64.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC-CCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCC----CC
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEP-SPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFG----GF 128 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp-~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~G----G~ 128 (711)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| -.++.+++++.||++.+-.-=.-|+---.+ -|
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~IpL 191 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMHLFGGKGGISL 191 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccCccC
Confidence 4566788999999999999999999999998 799999995 567799999999996544332444331111 28
Q ss_pred CcEeee----cCCeee
Q 005160 129 PVWLKF----VQGISF 140 (711)
Q Consensus 129 P~WL~~----~p~~~~ 140 (711)
|.|+.+ +|++.+
T Consensus 192 P~WV~~~g~~~pDi~f 207 (531)
T PLN02161 192 PLWIREIGDVNKDIYY 207 (531)
T ss_pred CHHHHhhhccCCCceE
Confidence 999985 467643
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.16 E-value=0.00045 Score=76.21 Aligned_cols=115 Identities=18% Similarity=0.346 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCceeecccchHHHHHHHHHHcCCEEEEecCcccccc----cCCCCCCcE
Q 005160 57 MWEGLIQKAKDGGLDVIDTYVFWNVHEPS-PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAE----WNFGGFPVW 131 (711)
Q Consensus 57 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaE----w~~GG~P~W 131 (711)
.-+..|+++|++|+..|.+.|.|...|.+ |++|||+ --.++.+++++.||++.+-.-=.-|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs---~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWS---GYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---H---HHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 56789999999999999999999999997 9999999 466779999999999754332233421 111137999
Q ss_pred eee---cCCeeec--c------------CChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccc
Q 005160 132 LKF---VQGISFR--T------------DNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIE 181 (711)
Q Consensus 132 L~~---~p~~~~R--~------------~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiE 181 (711)
+.. ..+|... + .... ++.-+.|++.....++ ++. +-|.-|||.
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~vg 153 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQVG 153 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE-
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEec
Confidence 974 2244221 0 1112 4555566666666666 332 577777763
No 26
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.08 E-value=0.00071 Score=73.61 Aligned_cols=157 Identities=18% Similarity=0.308 Sum_probs=109.1
Q ss_pred EEEEEecCCCCCHh-HHHHHHHHHHHCCCCEEEEc--ccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecCccc
Q 005160 43 LFSGSIHYPRSSHE-MWEGLIQKAKDGGLDVIDTY--VFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYI 119 (711)
Q Consensus 43 ~~sg~~Hy~r~~~~-~W~~~l~k~Ka~G~NtV~~y--v~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyi 119 (711)
.+|.+++..++..+ ..++ +-..-||.|..- .-|...||++|+|||+ ..+++++.|+++||.|---+ -
T Consensus 11 ~~G~av~~~~~~~~~~~~~----~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--L- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDPRYRE----LFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--L- 80 (320)
T ss_dssp EEEEEEBGGGHTHHHHHHH----HHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--E-
T ss_pred CEEEEechhHcCCcHHHHH----HHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--E-
Confidence 78899998877655 3443 334558988875 5599999999999999 89999999999999875221 1
Q ss_pred ccccCCCCCCcEeeecCCeeeccC-ChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccCccc---------
Q 005160 120 CAEWNFGGFPVWLKFVQGISFRTD-NKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPERE--------- 189 (711)
Q Consensus 120 caEw~~GG~P~WL~~~p~~~~R~~-d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~--------- 189 (711)
=|.. ..|.|+...+.. ... .+...+.+++++++++.++++ .|.|..|-|=||-=....
T Consensus 81 --vW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~ 148 (320)
T PF00331_consen 81 --VWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSP 148 (320)
T ss_dssp --EESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSH
T ss_pred --EEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCCh
Confidence 1433 789999764110 000 124788999999999988873 178999999999732110
Q ss_pred ccCchhHHHHHHHHHHHHHcCCCcceeecCCC
Q 005160 190 EFGSAGEAYMKWAAEMAVELNTEVPWVMCKEE 221 (711)
Q Consensus 190 ~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~ 221 (711)
.+...+.+|+...-+.+++..+++.++.++-.
T Consensus 149 ~~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~ 180 (320)
T PF00331_consen 149 WYDALGPDYIADAFRAAREADPNAKLFYNDYN 180 (320)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhhcccHhHHHHHHHHHHHhCCCcEEEecccc
Confidence 01223567999999999999999988887753
No 27
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.03 E-value=0.0033 Score=67.28 Aligned_cols=133 Identities=21% Similarity=0.320 Sum_probs=99.6
Q ss_pred HHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeeecCCeeeccCC
Q 005160 65 AKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDN 144 (711)
Q Consensus 65 ~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d 144 (711)
.|+++.=|-+.-.=|+..||++|.|+|+ --+++.+.|+++||.+- -=+-| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lh--GHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLH--GHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeec--cceee---ecc-cCCchhhccc-----cCh
Confidence 5555554555556699999999999999 78899999999999653 22222 433 6788886532 244
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccC----cc---cccCchhHHHHHHHHHHHHHcCCCcceee
Q 005160 145 KPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEP----ER---EEFGSAGEAYMKWAAEMAVELNTEVPWVM 217 (711)
Q Consensus 145 ~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~----~~---~~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 217 (711)
+..++.+++++..++.+++ |-|+.|-|=||-=. +. +..+..+.+|+++.-+.+++.+++--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7789999999999999998 46999999999732 11 11224678899999999999988877877
Q ss_pred cCC
Q 005160 218 CKE 220 (711)
Q Consensus 218 ~~~ 220 (711)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 765
No 28
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.98 E-value=0.013 Score=58.00 Aligned_cols=136 Identities=13% Similarity=0.137 Sum_probs=83.1
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCC-----CC---CCceeecccchHHHHHHHHHHcCCEEEEecCcccccc
Q 005160 51 PRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHE-----PS---PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAE 122 (711)
Q Consensus 51 ~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hE-----p~---~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaE 122 (711)
-.+.++.|++.++.||++|+|+|=+- |.-.. |. ++.|.-....-|+.+|++|++.||+|.+..+ ..
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~~-- 88 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--FD-- 88 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--CC--
Confidence 47899999999999999999998532 32111 22 2223223345889999999999999998863 11
Q ss_pred cCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccCcccccCchhHHHHHHH
Q 005160 123 WNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEFGSAGEAYMKWA 202 (711)
Q Consensus 123 w~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l 202 (711)
|.|-.. .|+.. ...+-+.+++.+. . .++++.+.=+|=|-.|..... ....++.+.|
T Consensus 89 ------~~~w~~--------~~~~~---~~~~~~~v~~el~--~-~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l 144 (166)
T PF14488_consen 89 ------PDYWDQ--------GDLDW---EAERNKQVADELW--Q-RYGHHPSFYGWYIPYEIDDYN----WNAPERFALL 144 (166)
T ss_pred ------chhhhc--------cCHHH---HHHHHHHHHHHHH--H-HHcCCCCCceEEEecccCCcc----cchHHHHHHH
Confidence 222221 22222 1111122444443 1 234455778888888987642 2456677778
Q ss_pred HHHHHHcCCCccee
Q 005160 203 AEMAVELNTEVPWV 216 (711)
Q Consensus 203 ~~~~~~~g~~vp~~ 216 (711)
.+.+++...+.|+.
T Consensus 145 ~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 145 GKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHhCCCCCeE
Confidence 77777765566653
No 29
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.89 E-value=0.0011 Score=75.40 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC--CCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEee
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPS--PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLK 133 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~ 133 (711)
..|+++|+.||++|+|+.+.-|.|...+|. +|++|-+|...-+++|+.+.++||..|+-. -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 468999999999999999999999999998 699999999999999999999999987663 2445899998
Q ss_pred ecCCeeeccCChhHHHHHHHHHHHHHHHhhh
Q 005160 134 FVQGISFRTDNKPFKHAMQNFTQKIVLMMKD 164 (711)
Q Consensus 134 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~ 164 (711)
+.-+- .++...+...+|.+.+++++.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 64442 2466677777777777777774
No 30
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.81 E-value=0.0042 Score=67.75 Aligned_cols=137 Identities=20% Similarity=0.325 Sum_probs=81.9
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCC-CceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeeecCC
Q 005160 59 EGLIQKAKDGGLDVIDTYVFWNVHEPSP-GNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQG 137 (711)
Q Consensus 59 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~-G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~~p~ 137 (711)
+|.|+.+|+.|+|+||.=| |+ .|.. |..|.+ ++.++.+.|+++||.|+|-+- | -.- |- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-Y-SD~--------Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-Y-SDF--------WA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--S-SSS------------BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-c-cCC--------CC--CCC
Confidence 5789999999999999977 54 3444 665655 667777778899999999863 2 112 22 233
Q ss_pred eeec------cCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccC--cccccCc-h----hHHHHHHHHH
Q 005160 138 ISFR------TDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEP--EREEFGS-A----GEAYMKWAAE 204 (711)
Q Consensus 138 ~~~R------~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~--~~~~~~~-~----~~~y~~~l~~ 204 (711)
-+.. .+-..-.++|..|.+.++..|++ +|=.+=||||.||... ... .+. . -..+++.-.+
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~Gmlwp-~g~~~~~~~~a~ll~ag~~ 161 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINNGMLWP-DGKPSNWDNLAKLLNAGIK 161 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGGESTBT-TTCTT-HHHHHHHHHHHHH
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccccccCc-CCCccCHHHHHHHHHHHHH
Confidence 2111 12345678999999999999985 3557789999999743 211 111 1 1335555567
Q ss_pred HHHHcCCCcc-eeecCC
Q 005160 205 MAVELNTEVP-WVMCKE 220 (711)
Q Consensus 205 ~~~~~g~~vp-~~~~~~ 220 (711)
.+|+.+.++. .+|++.
T Consensus 162 AVr~~~p~~kV~lH~~~ 178 (332)
T PF07745_consen 162 AVREVDPNIKVMLHLAN 178 (332)
T ss_dssp HHHTHSSTSEEEEEES-
T ss_pred HHHhcCCCCcEEEEECC
Confidence 7777666654 456564
No 31
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.60 E-value=0.01 Score=70.05 Aligned_cols=99 Identities=24% Similarity=0.207 Sum_probs=67.5
Q ss_pred CCccEEEEEEEecCCCCCcccCCCCCCeeeeCCcceEEEEEECCEEEEEEeCcccceeeEEEeeeeccCCcc-EEEEEEe
Q 005160 445 DTSDYLWCSTSVNISSSDSFLHGGERPTLSVQSRGHALHVFVNGQLTGSASGTRTYKRFTFRGNVNLHAGVN-TISLLSI 523 (711)
Q Consensus 445 d~~gy~~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~~~vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~-~L~ILve 523 (711)
+..|..|||+++.++... .|.+..|.+.++...+.|||||+.||...+.. ..+.++++-.|+.|.+ +|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEe
Confidence 356889999999876432 24567899999999999999999999876532 3445555445666754 9999997
Q ss_pred cCCcc---ccccCCC--------------ccccceeccEEEcc
Q 005160 524 AVGLP---NNGPHFE--------------SYKTGVLGPVVLHG 549 (711)
Q Consensus 524 n~Gr~---NyG~~~~--------------~~~kGI~G~V~l~g 549 (711)
|.-+. ..|...+ -...||.++|.|.-
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~ 178 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYT 178 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEE
Confidence 64211 0111000 13589999999854
No 32
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.57 E-value=0.0041 Score=60.52 Aligned_cols=67 Identities=24% Similarity=0.497 Sum_probs=49.7
Q ss_pred CCCceEEEEEEeCCCCC--CceEEeeCCC-ceEEEEECCeeeeeeecccccCCccCCccCCCCCCCCCCCCCCCCeeeee
Q 005160 598 QQPLTWYKAYFDAPEGD--EPLAMDMSSM-NKGQVLINGQNIGRYWTAIANGACRNCNYTGTYRPTNCGFDCGKPSQQWY 674 (711)
Q Consensus 598 ~~~~~~yk~~F~~p~~~--d~t~Ld~~g~-gKG~v~VNG~nlGRYW~~~~~G~~~~~~~~G~y~~~~~~~~~~~PQqtlY 674 (711)
..+..|||.+|++|+.. ..++|.+.+. ....|||||+-+|+-.. + | ..-+ +
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~----~----------~-----------~~~~-~ 119 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEG----G----------Y-----------TPFE-F 119 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEES----T----------T-----------S-EE-E
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCC----C----------c-----------CCeE-E
Confidence 34679999999998753 3588999886 58999999999999651 1 1 2233 4
Q ss_pred ecCccccCCCC-cEEEEE
Q 005160 675 HVPRSWLKPRQ-NLLIVF 691 (711)
Q Consensus 675 hvP~~~Lk~g~-N~Ivvf 691 (711)
-|+. .|++|+ |+|.|.
T Consensus 120 dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 120 DITD-YLKPGEENTLAVR 136 (167)
T ss_dssp ECGG-GSSSEEEEEEEEE
T ss_pred eChh-hccCCCCEEEEEE
Confidence 5764 799988 888764
No 33
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.41 E-value=0.0079 Score=68.97 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCC--CCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeee
Q 005160 57 MWEGLIQKAKDGGLDVIDTYVFWNVHEPS--PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKF 134 (711)
Q Consensus 57 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~ 134 (711)
.|+++++.||++|+|+.++-|.|....|. +|++|=.|....+++|+.+.++||..++-. -.=.+|.||..
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~~ 141 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLVQ 141 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHHH
Confidence 48899999999999999999999999996 566788888899999999999999987664 12248999975
Q ss_pred c-CCeeeccCChhHHHHHHHHHHHHHHHhhh
Q 005160 135 V-QGISFRTDNKPFKHAMQNFTQKIVLMMKD 164 (711)
Q Consensus 135 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~~ 164 (711)
. -+- .++...++..+|.+.+++++.+
T Consensus 142 ~yGGW----~n~~~~~~F~~Ya~~~f~~fgd 168 (477)
T PRK15014 142 QYGSW----TNRKVVDFFVRFAEVVFERYKH 168 (477)
T ss_pred hcCCC----CChHHHHHHHHHHHHHHHHhcC
Confidence 3 332 3455666677777777776663
No 34
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.37 E-value=0.0083 Score=68.72 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC--CCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEee
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPS--PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLK 133 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~ 133 (711)
..|+++++.||++|+|+.++-+.|....|. ++++|=+|....+++|+.|.++||.+++-. -.=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 347999999999999999999999999997 456777777899999999999999987654 1234899986
Q ss_pred ec-CCeeeccCChhHHHHHHHHHHHHHHHhh
Q 005160 134 FV-QGISFRTDNKPFKHAMQNFTQKIVLMMK 163 (711)
Q Consensus 134 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 163 (711)
.. -+- .++...++..+|.+.+++++.
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 53 332 245555666666666666655
No 35
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.17 E-value=0.014 Score=66.95 Aligned_cols=96 Identities=14% Similarity=0.109 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeee
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPS-PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKF 134 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~ 134 (711)
..|+++++.||++|+|+.++-|.|...+|. .|.+|=.|...-+++|+.|.++||..++-.= =| .+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-----HF---DTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCcHHHHH
Confidence 357899999999999999999999999996 5778888888999999999999999776531 13 38999976
Q ss_pred cCCeeeccCChhHHHHHHHHHHHHHHHhh
Q 005160 135 VQGISFRTDNKPFKHAMQNFTQKIVLMMK 163 (711)
Q Consensus 135 ~p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 163 (711)
.-+- .++...+...+|.+.+++++.
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 4332 244444555555555555444
No 36
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.12 E-value=0.019 Score=71.71 Aligned_cols=94 Identities=19% Similarity=0.259 Sum_probs=66.2
Q ss_pred cEEEEEEEecCCCCCcccCCCCCCeeeeCCcceEEEEEECCEEEEEEeCcccceeeEEEeeeeccCCccEEEEEEecCCc
Q 005160 448 DYLWCSTSVNISSSDSFLHGGERPTLSVQSRGHALHVFVNGQLTGSASGTRTYKRFTFRGNVNLHAGVNTISLLSIAVGL 527 (711)
Q Consensus 448 gy~~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~~~vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr 527 (711)
+-.|||+++.++... .|.+..|.+.++...+.|||||++||...+.. ..+.|.++-.|+.|.|+|.|.|.+...
T Consensus 109 ~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~d 182 (1021)
T PRK10340 109 PTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWAD 182 (1021)
T ss_pred CeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecCC
Confidence 567999999876432 24567899999999999999999999865432 234455444567788999999874332
Q ss_pred cccccCCCc----cccceeccEEEccc
Q 005160 528 PNNGPHFES----YKTGVLGPVVLHGI 550 (711)
Q Consensus 528 ~NyG~~~~~----~~kGI~G~V~l~g~ 550 (711)
|..+++ ...||.++|.|--.
T Consensus 183 ---~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 183 ---STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred ---CCccccCCccccccccceEEEEEe
Confidence 222322 24899999988543
No 37
>PLN02998 beta-glucosidase
Probab=96.11 E-value=0.0061 Score=70.15 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeee
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPS-PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKF 134 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~ 134 (711)
..|+++++.||++|+|+-++-|-|...+|. .|.+|=+|...-+++|+.+.++||..++-.= =|+ +|.||..
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~d---lP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HFD---LPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CCC---CCHHHHH
Confidence 458999999999999999999999999996 6778888889999999999999999775531 133 7999976
Q ss_pred c-CCeeeccCChhHHHHHHHHHHHHHHHhh
Q 005160 135 V-QGISFRTDNKPFKHAMQNFTQKIVLMMK 163 (711)
Q Consensus 135 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 163 (711)
. -+-.=|..=..|.++++..++++..+++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4421122123344444444444444444
No 38
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.02 E-value=0.019 Score=65.72 Aligned_cols=96 Identities=13% Similarity=0.105 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeee
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPS-PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKF 134 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~ 134 (711)
..|+++++.||++|+|+.++-|.|...+|. +|++|=+|...-+++|+.|.++||..++-.= =| -+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-----HF---DTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-----CC---CCcHHHHH
Confidence 358899999999999999999999999996 6777778888999999999999999877641 13 38999976
Q ss_pred cCCeeeccCChhHHHHHHHHHHHHHHHhh
Q 005160 135 VQGISFRTDNKPFKHAMQNFTQKIVLMMK 163 (711)
Q Consensus 135 ~p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 163 (711)
..+- .++...++..+|.+.+++.+.
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5442 245555555566666655554
No 39
>PLN02814 beta-glucosidase
Probab=96.00 E-value=0.0073 Score=69.66 Aligned_cols=96 Identities=17% Similarity=0.234 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeee
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPS-PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKF 134 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~ 134 (711)
..|+++++.||++|+|+-++-|.|...+|. +|.+|-+|...-+++|+.|.++||..++-.= =|+ +|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~d---lP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HYD---LPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CCC---CCHHHHH
Confidence 458999999999999999999999999996 6788888999999999999999999776531 244 7999976
Q ss_pred c-CCeeeccCChhHHHHHHHHHHHHHHHhh
Q 005160 135 V-QGISFRTDNKPFKHAMQNFTQKIVLMMK 163 (711)
Q Consensus 135 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 163 (711)
. -+- .++...++..+|.+.+++++.
T Consensus 149 ~yGGW----~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 149 EYGGW----INRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred hcCCc----CChhHHHHHHHHHHHHHHHhC
Confidence 4 442 233444444555555555444
No 40
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=95.91 E-value=0.021 Score=64.34 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=72.5
Q ss_pred CHhHH-----HHHHHHHHHCCCCEEEEcccCCcCCCC----CCceeecccchHHHHHHHHHHcCCEEEEec----Ccccc
Q 005160 54 SHEMW-----EGLIQKAKDGGLDVIDTYVFWNVHEPS----PGNYNFEGRYDLVRFIKLVQKAGLYVHLRI----GPYIC 120 (711)
Q Consensus 54 ~~~~W-----~~~l~k~Ka~G~NtV~~yv~Wn~hEp~----~G~ydF~g~~dl~~fl~la~~~GL~vilr~----GPyic 120 (711)
...-| ++.+..||.+|||+||+++.|..+++. |...+=.-..-|++.++.|++.||+|++-. |.-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 45668 899999999999999999995444553 222211111278899999999999999873 22221
Q ss_pred cccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccC
Q 005160 121 AEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEP 186 (711)
Q Consensus 121 aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~ 186 (711)
-| ..|.... . .......++..+-++.|+.+++ +.-.||++|+=||.-+
T Consensus 146 ~~------~s~~~~~--~---~~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYTSD--Y---KEENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred cC------ccccccc--c---cccchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 11 1222110 0 0022334555555566666665 2468999999999863
No 41
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.90 E-value=0.052 Score=51.68 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=66.9
Q ss_pred HHHHHHHHCCCCEEEEccc----C-----CcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCc
Q 005160 60 GLIQKAKDGGLDVIDTYVF----W-----NVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPV 130 (711)
Q Consensus 60 ~~l~k~Ka~G~NtV~~yv~----W-----n~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~ 130 (711)
+.++.+|++|.|+|.++.- | ..|.+.|+- +..-|.+++++|++.||.|++|...- -.|+-.--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4567899999999998542 3 344455543 12256899999999999999997655 44555556899
Q ss_pred EeeecCCee-------------eccCChhHHHHHHHHHHHHHHHh
Q 005160 131 WLKFVQGIS-------------FRTDNKPFKHAMQNFTQKIVLMM 162 (711)
Q Consensus 131 WL~~~p~~~-------------~R~~d~~y~~~~~~~~~~l~~~~ 162 (711)
|+..+++=+ .-+.|..|++.+.+-+++++..+
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 998754311 12335578887777777776654
No 42
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.86 E-value=0.012 Score=67.45 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC--CCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEee
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPS--PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLK 133 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~ 133 (711)
..|+++++.||++|+|+.++-|.|+..+|. +|++|=.|...-+++|+.+.++||..++-. | =| -+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--~---H~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--T---HF---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--c---cc---CCCHHHH
Confidence 458999999999999999999999999997 566777888899999999999999877553 0 13 3799997
Q ss_pred ec-CCeeeccCChhHHHHHHHHHHHHHHHhh
Q 005160 134 FV-QGISFRTDNKPFKHAMQNFTQKIVLMMK 163 (711)
Q Consensus 134 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 163 (711)
.. -+-.=|..=..|.++++..++++..+++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 54 4431121113344444444444444444
No 43
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.76 E-value=0.012 Score=67.37 Aligned_cols=100 Identities=16% Similarity=0.096 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC--CCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEee
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPS--PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLK 133 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~--~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~ 133 (711)
..|+++++.||++|+|+.++-|.|...+|. +|.+|=.|...-+++|+.|.++||..++-.= =| -+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-----H~---dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-----HF---EMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCCHHHH
Confidence 458999999999999999999999999997 5567777888999999999999998776541 13 3799997
Q ss_pred ec-CCeeeccCChhHHHHHHHHHHHHHHHhh
Q 005160 134 FV-QGISFRTDNKPFKHAMQNFTQKIVLMMK 163 (711)
Q Consensus 134 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 163 (711)
.. -+-.-|..=..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 54 4431122223344444444444444444
No 44
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=95.71 E-value=0.15 Score=58.25 Aligned_cols=149 Identities=17% Similarity=0.290 Sum_probs=99.3
Q ss_pred CcEEECCEEeEEEEEEecC-----CCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHH
Q 005160 32 KALIINGQRRILFSGSIHY-----PRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQK 106 (711)
Q Consensus 32 ~~f~~dGkp~~~~sg~~Hy-----~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~ 106 (711)
-.|.|||.|.++.++.--+ .|.+.+.-+-.|+.++++|+|++++ |. -|.| .-+.|-++|.+
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WG-----GGvY------Esd~FY~lad~ 393 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WG-----GGVY------ESDYFYQLADS 393 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ec-----Cccc------cchhHHHHhhh
Confidence 5789999999998876544 3445666778899999999999998 43 1333 34599999999
Q ss_pred cCCEEEEecCcccccccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccC
Q 005160 107 AGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEP 186 (711)
Q Consensus 107 ~GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~ 186 (711)
.|+.|---. =+.||-. ..|..|++.++.=++.-+.+++. +..||.+.-.||=-.
T Consensus 394 lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls~-------HpSviIfsgNNENEa 447 (867)
T KOG2230|consen 394 LGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLSH-------HPSVIIFSGNNENEA 447 (867)
T ss_pred ccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhcc-------CCeEEEEeCCCccHH
Confidence 999875221 1334433 35778888888777776666663 458999988777311
Q ss_pred --cccccC-------chhH----HHHHHHHHHHHHcCCCcceeecCC
Q 005160 187 --EREEFG-------SAGE----AYMKWAAEMAVELNTEVPWVMCKE 220 (711)
Q Consensus 187 --~~~~~~-------~~~~----~y~~~l~~~~~~~g~~vp~~~~~~ 220 (711)
.+.-|+ ..-+ -|.+-++++...-....|+++...
T Consensus 448 Al~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 448 ALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 000011 0112 244556677766677889888664
No 45
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.70 E-value=0.047 Score=57.86 Aligned_cols=111 Identities=24% Similarity=0.281 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHH---HcCCEEEEecCcccccccCCCCCCcEee
Q 005160 57 MWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQ---KAGLYVHLRIGPYICAEWNFGGFPVWLK 133 (711)
Q Consensus 57 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~---~~GL~vilr~GPyicaEw~~GG~P~WL~ 133 (711)
.-+|.|+-+|+.|+|.|+.-| ||..--..|.=-=.|++|+.+.+++|+ ..||+|++-+= | -.|-.
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-Y----------SDfwa 131 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-Y----------SDFWA 131 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-c----------hhhcc
Confidence 346899999999999999854 776554555433456789999998865 46999999862 1 11221
Q ss_pred e-----cCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCcc
Q 005160 134 F-----VQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYE 185 (711)
Q Consensus 134 ~-----~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg 185 (711)
+ +|.....-+-..-..++-.|.+..+..++++ |=-+=||||.||-.
T Consensus 132 DPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn 182 (403)
T COG3867 132 DPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETN 182 (403)
T ss_pred ChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccC
Confidence 1 1221112233455677778888888888854 33567999999984
No 46
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.68 E-value=0.038 Score=69.02 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=63.9
Q ss_pred cEEEEEEEecCCCCCcccCCCC-CCeeeeCCcceEEEEEECCEEEEEEeCcccceeeEEEeeeeccCCccEEEEEEecCC
Q 005160 448 DYLWCSTSVNISSSDSFLHGGE-RPTLSVQSRGHALHVFVNGQLTGSASGTRTYKRFTFRGNVNLHAGVNTISLLSIAVG 526 (711)
Q Consensus 448 gy~~Y~t~i~~~~~~~~~~~g~-~~~L~i~~~~D~~~vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~G 526 (711)
+-.|||+++.++... .+. +..|.+.++.-.+.|||||++||...+.. ..+.|.++-.|+.|.|+|.|.|...-
T Consensus 120 ~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~s 193 (1027)
T PRK09525 120 PTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRWS 193 (1027)
T ss_pred CeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEecC
Confidence 678999999876431 122 46799999999999999999999765432 23455554456778899999884321
Q ss_pred ccccccCCCc----cccceeccEEEcc
Q 005160 527 LPNNGPHFES----YKTGVLGPVVLHG 549 (711)
Q Consensus 527 r~NyG~~~~~----~~kGI~G~V~l~g 549 (711)
-|..+++ ...||..+|.|--
T Consensus 194 ---dgs~~e~qd~w~~sGI~R~V~L~~ 217 (1027)
T PRK09525 194 ---DGSYLEDQDMWRMSGIFRDVSLLH 217 (1027)
T ss_pred ---CCCccccCCceeeccccceEEEEE
Confidence 1222322 2369999988843
No 47
>PLN02849 beta-glucosidase
Probab=95.67 E-value=0.012 Score=67.81 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeee
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPS-PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKF 134 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~ 134 (711)
..|+++++.||++|+|+-++-|.|...+|. .|.+|=.|...-+++|+.|.++||..++-.= =|+ +|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~d---lP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HYD---HPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CCC---CcHHHHH
Confidence 458999999999999999999999999996 4778888888999999999999999776531 133 7999976
Q ss_pred c-CCeeeccCChhHHHHHHHHHHHHHHHhh
Q 005160 135 V-QGISFRTDNKPFKHAMQNFTQKIVLMMK 163 (711)
Q Consensus 135 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 163 (711)
. -+-.=|..=..|.++++..++++..+++
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4421121123344444444444444444
No 48
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.14 E-value=0.062 Score=60.74 Aligned_cols=96 Identities=19% Similarity=0.320 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCc--eeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEee
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGN--YNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLK 133 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~--ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~ 133 (711)
..++++++.||+||+|+.|+-|.|+..-|..+. .+=.|...-+++++.|.++|+..++-.= =|+ +|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hfd---~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HFD---LPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----ccC---CcHHHh
Confidence 357899999999999999999999999886554 7777888899999999999999776641 233 799998
Q ss_pred ec-CCeeeccCChhHHHHHHHHHHHHHHHhh
Q 005160 134 FV-QGISFRTDNKPFKHAMQNFTQKIVLMMK 163 (711)
Q Consensus 134 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 163 (711)
+. .+- .|..-.++..+|.+.+++++.
T Consensus 131 ~~ygGW----~nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGW----ENRETVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCc----cCHHHHHHHHHHHHHHHHHhc
Confidence 75 343 233344555556666665555
No 49
>PRK09936 hypothetical protein; Provisional
Probab=93.14 E-value=0.8 Score=48.95 Aligned_cols=58 Identities=24% Similarity=0.441 Sum_probs=47.5
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccc-chHHHHHHHHHHcCCEEEEe
Q 005160 51 PRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGR-YDLVRFIKLVQKAGLYVHLR 114 (711)
Q Consensus 51 ~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~-~dl~~fl~la~~~GL~vilr 114 (711)
.+++++.|+.+++.+|+.||+|+= |-|.---.+ ||.+. -.|.+.++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLi--vQWt~yG~~----~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLV--VQWTRYGDA----DFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEE--EEeeeccCC----CcccchHHHHHHHHHHHHcCCEEEEc
Confidence 468999999999999999999974 456544111 88765 48999999999999998876
No 50
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=92.39 E-value=0.61 Score=50.72 Aligned_cols=117 Identities=19% Similarity=0.216 Sum_probs=70.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccC-------CcCCCC-------CCc-eeecccchHHHHHHHHHHcCCEEEEecCcc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFW-------NVHEPS-------PGN-YNFEGRYDLVRFIKLVQKAGLYVHLRIGPY 118 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~W-------n~hEp~-------~G~-ydF~g~~dl~~fl~la~~~GL~vilr~GPy 118 (711)
.++.-++.|++++++|||+|=.-|-+ +-.+|. +|. -.|+ -|+.+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 67888999999999999999765543 222221 111 0122 79999999999999999775 11
Q ss_pred cccccC----CCCCCcEee-ecCCeeecc----CCh----hHHHHHHHHHHHHHHHhhhccccccCCCceEEeccc
Q 005160 119 ICAEWN----FGGFPVWLK-FVQGISFRT----DNK----PFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIE 181 (711)
Q Consensus 119 icaEw~----~GG~P~WL~-~~p~~~~R~----~d~----~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiE 181 (711)
-..... .-..|.|+. +.++..... .+. +-..+|++|+..++..|.+ .+ +|=++|++
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlD 161 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLD 161 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEec
Confidence 111001 113578876 345532222 111 1247788888777755542 22 45567776
No 51
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.37 E-value=1.9 Score=51.28 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=40.2
Q ss_pred HHHH-HHHHHCCCCEEEE-cccCCcCCC----CCC-----ceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 59 EGLI-QKAKDGGLDVIDT-YVFWNVHEP----SPG-----NYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 59 ~~~l-~k~Ka~G~NtV~~-yv~Wn~hEp----~~G-----~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
.++| ..+|++|+|+|.+ .|+..-... .+- .-.|....+|.+|++.|+++||.|||-.
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4554 8889999999998 676431110 000 0135556799999999999999999874
No 52
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=92.11 E-value=3.2 Score=50.26 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=44.8
Q ss_pred HhHHHHHHHHHHHCCCCEEEE-ccc-------CCcC-----CCCCCceeecccchHHHHHHHHHHcCCEEEEecCc
Q 005160 55 HEMWEGLIQKAKDGGLDVIDT-YVF-------WNVH-----EPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGP 117 (711)
Q Consensus 55 ~~~W~~~l~k~Ka~G~NtV~~-yv~-------Wn~h-----Ep~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GP 117 (711)
.+.|++.|..+|++|+|+|++ .|+ |.++ .+.+ .|....+|.+|++.|+++||.|||-.=|
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~---~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSS---RSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccc---ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 456889999999999999996 232 4332 1221 4555679999999999999999987533
No 53
>PRK14706 glycogen branching enzyme; Provisional
Probab=91.58 E-value=3.2 Score=49.58 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=36.8
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCcC-----CCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 62 IQKAKDGGLDVIDT-YVF-------WNVH-----EPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 62 l~k~Ka~G~NtV~~-yv~-------Wn~h-----Ep~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
+..+|++|+|+|+. .|. |.+. .|.+ .|....++.+|++.|+++||.|||-.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~---~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS---RLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 46799999999995 331 4221 1221 24455799999999999999999874
No 54
>smart00642 Aamy Alpha-amylase domain.
Probab=91.45 E-value=0.55 Score=46.36 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=46.5
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCcCC-------CCCCce-----eecccchHHHHHHHHHHcCCEEEEecCcccccc
Q 005160 55 HEMWEGLIQKAKDGGLDVIDTYVFWNVHE-------PSPGNY-----NFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAE 122 (711)
Q Consensus 55 ~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hE-------p~~G~y-----dF~g~~dl~~fl~la~~~GL~vilr~GPyicaE 122 (711)
-+-+.+.|..+|++|+|+|.+-=++.... -.+..| .|....++.++++.|+++||.||+-.=|-=++.
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 45567788889999999999743322111 111122 345567999999999999999998864444443
No 55
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=91.45 E-value=28 Score=39.11 Aligned_cols=247 Identities=15% Similarity=0.142 Sum_probs=124.8
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEc-------ccCCcCCCCCCceeecccch-HHHHHHHHHHcCCEEEEecCccc
Q 005160 48 IHYPRSSHEMWEGLIQKAKDGGLDVIDTY-------VFWNVHEPSPGNYNFEGRYD-LVRFIKLVQKAGLYVHLRIGPYI 119 (711)
Q Consensus 48 ~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~y-------v~Wn~hEp~~G~ydF~g~~d-l~~fl~la~~~GL~vilr~GPyi 119 (711)
+.+.+..++.|. +.+|++|+..|=.- -.|.-.-..-..-+-.-.+| |.++.+.|+++||++-+=-.+
T Consensus 76 F~p~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-- 150 (384)
T smart00812 76 FTAEKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-- 150 (384)
T ss_pred CCchhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH--
Confidence 334456777775 57888999865421 12543322111111111344 457889999999987663222
Q ss_pred ccccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccCcccccCchhHHHH
Q 005160 120 CAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEFGSAGEAYM 199 (711)
Q Consensus 120 caEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~ 199 (711)
-+|.. |.|....+....+.+.+.|.++++.|+.+|.+.+.+ + ||-++|- +-..+. ....--+
T Consensus 151 -~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~--Y-----gpd~lWf-D~~~~~------~~~~~~~ 212 (384)
T smart00812 151 -FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTR--Y-----KPDLLWF-DGGWEA------PDDYWRS 212 (384)
T ss_pred -HHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhc--C-----CCceEEE-eCCCCC------ccchhcH
Confidence 36653 444321111112345677888888888888888873 2 3445552 111111 0111124
Q ss_pred HHHHHHHHHcCCCc--ceeecCCCCCCcccccCCCCc-cc-ccCCCC-CCCCCceeee-cccccccCcCC-CCCcCCHHH
Q 005160 200 KWAAEMAVELNTEV--PWVMCKEEDAPDPVINTCNGF-YC-HSFSPN-KPSKPKMWTE-AWTGWFSDFGG-QNYQRPVED 272 (711)
Q Consensus 200 ~~l~~~~~~~g~~v--p~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~-~p~~P~~~tE-~~~Gwf~~wG~-~~~~~~~~~ 272 (711)
+.|.++++++.+++ .++ ++... .. .....+. .+ +...+. ....|.-..- .-.+|+-+-+. ....+++++
T Consensus 213 ~~l~~~~~~~qP~~~~vvv-n~R~~-~~--~~~~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~ 288 (384)
T smart00812 213 KEFLAWLYNLSPVKDTVVV-NDRWG-GT--GCKHGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKE 288 (384)
T ss_pred HHHHHHHHHhCCCCceEEE-Ecccc-cc--CCCCCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHH
Confidence 56777777776654 122 22110 00 0000000 01 111111 0111211100 11245444332 233578999
Q ss_pred HHHHHHHHHHhCCeeeeeeEEeccCCCCCCCCCCcccCCCCCCCCCCcCCCCCchhhHHHHHHHHHHHhhhhcc
Q 005160 273 LAFAVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLIREPKYGHLKKLHKAIKLCENAL 346 (711)
Q Consensus 273 ~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDy~Apl~E~G~~~~pky~~lr~l~~~~~~~~~~l 346 (711)
+...+..++.+|++++ + | -+-+.+|.+....-..|+++.+.++....++
T Consensus 289 li~~l~~~Vsk~GnlL---L----------N------------VgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaI 337 (384)
T smart00812 289 LIRDLVDIVSKGGNLL---L----------N------------VGPKADGTIPEEEEERLLEIGKWLKVNGEAI 337 (384)
T ss_pred HHHHHhhhcCCCceEE---E----------c------------cCCCCCCCCCHHHHHHHHHHHHHHHhCCcee
Confidence 9999999999988752 1 1 1234567775556678888888887655443
No 56
>PRK05402 glycogen branching enzyme; Provisional
Probab=91.35 E-value=2.3 Score=51.63 Aligned_cols=53 Identities=23% Similarity=0.378 Sum_probs=38.6
Q ss_pred HH-HHHHHHCCCCEEEE-ccc-------CCc-----CCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 60 GL-IQKAKDGGLDVIDT-YVF-------WNV-----HEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 60 ~~-l~k~Ka~G~NtV~~-yv~-------Wn~-----hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
++ |..+|++|+|+|.. .|+ |.+ ..+.| .|....+|.+|++.|+++||.|||-.
T Consensus 269 ~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~---~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 269 DQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS---RFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 44 47889999999996 453 321 11222 35566799999999999999999874
No 57
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=89.12 E-value=0.77 Score=50.89 Aligned_cols=70 Identities=27% Similarity=0.314 Sum_probs=48.4
Q ss_pred EEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecCccc
Q 005160 44 FSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYI 119 (711)
Q Consensus 44 ~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyi 119 (711)
+|=++.+...+.+..+..|++|+++|+..|=| ++|.|+...=+. ...+..+++.|+++||.|++-+.|=+
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~ 71 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKV 71 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHH
Confidence 45567777778899999999999999999999 999998532111 13788999999999999999986644
No 58
>PRK12568 glycogen branching enzyme; Provisional
Probab=87.97 E-value=11 Score=45.66 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCcC-----CCCCCceeecccchHHHHHHHHHHcCCEEEEecCc
Q 005160 59 EGLIQKAKDGGLDVIDT-YVF-------WNVH-----EPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGP 117 (711)
Q Consensus 59 ~~~l~k~Ka~G~NtV~~-yv~-------Wn~h-----Ep~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GP 117 (711)
++.|..+|++|+|+|+. .|+ |.+. .|.+ .|....++.+|++.|+++||.|||-.=|
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 34468899999999996 342 4321 1222 4555679999999999999999987544
No 59
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=87.37 E-value=7.7 Score=41.00 Aligned_cols=131 Identities=17% Similarity=0.224 Sum_probs=76.4
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCcEee
Q 005160 55 HEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVH-LRIGPYICAEWNFGGFPVWLK 133 (711)
Q Consensus 55 ~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi-lr~GPyicaEw~~GG~P~WL~ 133 (711)
..-|++.|+.++++|++.|++-+ +..| ..+...+++ ..++.++.++++++||.|. +.+++. +.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~~-------~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSAH-------RRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCC-HHHHHHHHHHHHHcCCCceeeecCCC-------ccCc----
Confidence 45699999999999999999943 2222 123334554 2478899999999999875 443210 0111
Q ss_pred ecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccCcccccC---chhHHHHHHHHHHHHHcC
Q 005160 134 FVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEFG---SAGEAYMKWAAEMAVELN 210 (711)
Q Consensus 134 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~---~~~~~y~~~l~~~~~~~g 210 (711)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+-- .++.. ..... ..-.+.++.+.+.+++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~-~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLAG-YDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEecC-ccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 122355566666677777777666 23 456665421 11110 00000 012346677777788878
Q ss_pred CCc
Q 005160 211 TEV 213 (711)
Q Consensus 211 ~~v 213 (711)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 764
No 60
>PRK01060 endonuclease IV; Provisional
Probab=87.23 E-value=9.5 Score=40.21 Aligned_cols=95 Identities=17% Similarity=0.254 Sum_probs=60.2
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEE--EEecCcccccccCCCCCCcEeeec
Q 005160 58 WEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYV--HLRIGPYICAEWNFGGFPVWLKFV 135 (711)
Q Consensus 58 W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~v--ilr~GPyicaEw~~GG~P~WL~~~ 135 (711)
+++.|++++++|++.|++.+. +-+.-.++.++ ..++.++-+++++.||.+ +.--+||. +
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~---~~~~~~lk~~~~~~gl~~~~~~~h~~~~------------~--- 74 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLE---ELNIEAFKAACEKYGISPEDILVHAPYL------------I--- 74 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCC---HHHHHHHHHHHHHcCCCCCceEEecceE------------e---
Confidence 889999999999999999543 11211121222 126888999999999974 22233331 1
Q ss_pred CCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEecc
Q 005160 136 QGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQI 180 (711)
Q Consensus 136 p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Qi 180 (711)
.+-+.|+..+++..+.+++.++.-+ .+ |-++|.+..
T Consensus 75 ---nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h~ 110 (281)
T PRK01060 75 ---NLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFHP 110 (281)
T ss_pred ---cCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEcC
Confidence 2334567777777777887777666 33 445565543
No 61
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=86.96 E-value=7.2 Score=42.97 Aligned_cols=135 Identities=17% Similarity=0.258 Sum_probs=85.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHH---HcCCEEEEecCcccccccCCCCCCc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQ---KAGLYVHLRIGPYICAEWNFGGFPV 130 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~---~~GL~vilr~GPyicaEw~~GG~P~ 130 (711)
.++..+..++.+|+.|++.--.|-.|. .|.+-|++-++..- +.+|...|. |.+-.|.. .
T Consensus 56 ~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~----~ 117 (345)
T PF14307_consen 56 DPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR----R 117 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----c
Confidence 678899999999999999999988774 34556666665443 445655554 12222211 1
Q ss_pred EeeecCCeeeccCChhHH--HHHHHHHHHHHHHhhhccccccCCCceEEeccccCccCcccccCchhHHHHHHHHHHHHH
Q 005160 131 WLKFVQGISFRTDNKPFK--HAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEFGSAGEAYMKWAAEMAVE 208 (711)
Q Consensus 131 WL~~~p~~~~R~~d~~y~--~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 208 (711)
|-.....+.+- ..|. +..++.++.|++.+++..++--+|-||+++=--.++ +.-+++++.+++.+++
T Consensus 118 w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~ 186 (345)
T PF14307_consen 118 WDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKE 186 (345)
T ss_pred cCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHH
Confidence 22221222111 1121 334677888889999865655689999987432222 2457899999999999
Q ss_pred cCCCcceee
Q 005160 209 LNTEVPWVM 217 (711)
Q Consensus 209 ~g~~vp~~~ 217 (711)
.|+..+.+.
T Consensus 187 ~G~~giyii 195 (345)
T PF14307_consen 187 AGLPGIYII 195 (345)
T ss_pred cCCCceEEE
Confidence 999876544
No 62
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=86.89 E-value=0.58 Score=52.86 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=102.2
Q ss_pred cEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcC-CC---CCCceee-cccchHHHHHHHHHHc
Q 005160 33 ALIINGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVH-EP---SPGNYNF-EGRYDLVRFIKLVQKA 107 (711)
Q Consensus 33 ~f~~dGkp~~~~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~h-Ep---~~G~ydF-~g~~dl~~fl~la~~~ 107 (711)
.|.++++++..++..--+.++..++-+++|+-++-+|++++++. -+- |+ ++|.-+- ++..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 47888888887766666677777778889999999999999995 344 44 2332111 2334788999999999
Q ss_pred CCEEEEecCcccccccCCCCCCcEeee-----cCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEecccc
Q 005160 108 GLYVHLRIGPYICAEWNFGGFPVWLKF-----VQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIEN 182 (711)
Q Consensus 108 GL~vilr~GPyicaEw~~GG~P~WL~~-----~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiEN 182 (711)
+|+|+++. |.+==.+||. -|... .|+-. --|+.++..-++|+..+++-++. ...|.+|-+-|
T Consensus 80 ~lkvlitl---ivg~~hmgg~-Nw~Ipwag~~~pdn~--iyD~k~~~~~kkyvedlVk~yk~-------~ptI~gw~l~N 146 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGT-NWRIPWAGEQSPDNV--IYDPKFRGPGKKYVEDLVKPYKL-------DPTIAGWALRN 146 (587)
T ss_pred cceEEEEE---eecccccCcc-eeEeecCCCCCcccc--ccchhhcccHHHHHHHHhhhhcc-------ChHHHHHHhcC
Confidence 99998773 2211123443 22211 13211 12566777778888888775553 45788899999
Q ss_pred CccCcccccCchhHHHHHHHHHHHH
Q 005160 183 EYEPEREEFGSAGEAYMKWAAEMAV 207 (711)
Q Consensus 183 Eyg~~~~~~~~~~~~y~~~l~~~~~ 207 (711)
|-=. .-...+..+++|+++|+.
T Consensus 147 e~lv---~~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 147 EPLV---EAPISVNNFWDWSGEMYA 168 (587)
T ss_pred Cccc---cccCChhHHHHHHHHHHH
Confidence 9211 112356789999999864
No 63
>PRK14705 glycogen branching enzyme; Provisional
Probab=85.98 E-value=14 Score=47.38 Aligned_cols=53 Identities=21% Similarity=0.324 Sum_probs=39.3
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------CCcC-----CCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 60 GLIQKAKDGGLDVIDT-YVF-------WNVH-----EPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 60 ~~l~k~Ka~G~NtV~~-yv~-------Wn~h-----Ep~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
+.|..+|++|+|+|+. .|+ |.+. .|.+ .|....|+.+|++.|+++||.|||-.
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~---ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTS---RFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3468999999999996 442 5322 2222 45566799999999999999999763
No 64
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=85.91 E-value=7.2 Score=41.16 Aligned_cols=98 Identities=12% Similarity=0.171 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHc-CCEEEEecCcccccccCCCCCCcEeee
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKA-GLYVHLRIGPYICAEWNFGGFPVWLKF 134 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~-GL~vilr~GPyicaEw~~GG~P~WL~~ 134 (711)
.-|++.|+.+|++|++.|++-+........+ .....++.++.++++++ ++.+.+- +||. +
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~------------~-- 70 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKKERAEKFKAIAEEGPSICLSVH-APYL------------I-- 70 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCHHHHHHHHHHHHHcCCCcEEEE-cCce------------e--
Confidence 6799999999999999999965432111111 11345899999999999 6665543 2331 1
Q ss_pred cCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEecccc
Q 005160 135 VQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIEN 182 (711)
Q Consensus 135 ~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiEN 182 (711)
.+...++.-+++....+++.++..+ .+ |-+.|.+...+
T Consensus 71 ----~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g~ 108 (279)
T cd00019 71 ----NLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPGS 108 (279)
T ss_pred ----ccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCCC
Confidence 1223344445555555566665555 22 34566665443
No 65
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=85.75 E-value=7.9 Score=40.69 Aligned_cols=132 Identities=17% Similarity=0.243 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCcEeee
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVH-LRIGPYICAEWNFGGFPVWLKF 134 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi-lr~GPyicaEw~~GG~P~WL~~ 134 (711)
-.|++.++.++++|+..|++.+. ..|+ .....+|+ ..++.++.++++++||.+. +.++.+ + .+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~----~------~~--- 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSGH----R------RF--- 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecccc----c------Cc---
Confidence 36999999999999999999532 1221 01122333 3378899999999999875 333211 0 00
Q ss_pred cCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccCccc-ccCchhHHHHHHHHHHHHHcCCCc
Q 005160 135 VQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPERE-EFGSAGEAYMKWAAEMAVELNTEV 213 (711)
Q Consensus 135 ~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~-~~~~~~~~y~~~l~~~~~~~g~~v 213 (711)
.+.+.|+.-+++..+.++++++.-+ -+ |.++|.+.--..+..... ..-..-.+.++.+.+++++.|+.+
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 1233566656666666677666655 23 445555421111100000 000122356777888888888764
No 66
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=85.67 E-value=1.2 Score=51.24 Aligned_cols=61 Identities=10% Similarity=0.250 Sum_probs=42.5
Q ss_pred HhHHH---HHHHHHHHCCCCEEEE-cccCCc-----CCCCCCc-e-------------eecccchHHHHHHHHHHcCCEE
Q 005160 55 HEMWE---GLIQKAKDGGLDVIDT-YVFWNV-----HEPSPGN-Y-------------NFEGRYDLVRFIKLVQKAGLYV 111 (711)
Q Consensus 55 ~~~W~---~~l~k~Ka~G~NtV~~-yv~Wn~-----hEp~~G~-y-------------dF~g~~dl~~fl~la~~~GL~v 111 (711)
.+.|. +.|..+|++|+++|-+ +++-+. |--.+-. | .|....||.++++.|+++||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 35564 6788889999999987 354332 2221111 2 2334569999999999999999
Q ss_pred EEec
Q 005160 112 HLRI 115 (711)
Q Consensus 112 ilr~ 115 (711)
|+-.
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9875
No 67
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.16 E-value=4.1 Score=45.95 Aligned_cols=122 Identities=20% Similarity=0.286 Sum_probs=78.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcc-------------cCCcCCCCCCcee-ecccchHHHHHHHHHHcCCEEEEecCccc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYV-------------FWNVHEPSPGNYN-FEGRYDLVRFIKLVQKAGLYVHLRIGPYI 119 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv-------------~Wn~hEp~~G~yd-F~g~~dl~~fl~la~~~GL~vilr~GPyi 119 (711)
.+.+-.+.|.+++++|+|||-.-| +|..-. ||.+- =.|..-|...|++|++.||.|+.+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 778888999999999999997433 243332 33221 12334788889999999999999887777
Q ss_pred ccccCCCC---CCcEeeec-CCeee-ccCC-------hhHHHHHHHHHHHHH-HHhhhccccccCCCceEEeccccCcc
Q 005160 120 CAEWNFGG---FPVWLKFV-QGISF-RTDN-------KPFKHAMQNFTQKIV-LMMKDEKLFKSQGGPIILSQIENEYE 185 (711)
Q Consensus 120 caEw~~GG---~P~WL~~~-p~~~~-R~~d-------~~y~~~~~~~~~~l~-~~~~~~~~~~~~gGpII~~QiENEyg 185 (711)
-|--..-. .|.|+... |+... |... .+...+++.|+..++ +.++ .+ .|=++|.+-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~--~Y------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVR--NY------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHh--CC------CCCceecceeec
Confidence 65432222 35666553 44322 2222 245688899988887 5555 33 456677765443
No 68
>PRK12313 glycogen branching enzyme; Provisional
Probab=84.06 E-value=1.9 Score=51.47 Aligned_cols=51 Identities=18% Similarity=0.387 Sum_probs=38.2
Q ss_pred HHHHHHCCCCEEEE-ccc-------CCc-----CCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 62 IQKAKDGGLDVIDT-YVF-------WNV-----HEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 62 l~k~Ka~G~NtV~~-yv~-------Wn~-----hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
|..+|++|+|+|.. .|+ |.+ ..+.+ .|....+|.+|++.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58999999999995 453 321 11211 45566799999999999999999874
No 69
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=83.68 E-value=2.5 Score=41.66 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=72.7
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeeecCCeeec
Q 005160 62 IQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFR 141 (711)
Q Consensus 62 l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R 141 (711)
|+.++++|+..|+............ ...++++.++++++||.+..--.+.. +. .+....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~~----------~~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---FW----------SPDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---SS----------CTGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---cc----------ccccccc
Confidence 6789999999999965432221111 23789999999999999653321110 00 0111124
Q ss_pred cCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccc--cCccCccc-ccCchhHHHHHHHHHHHHHcCCCc
Q 005160 142 TDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIE--NEYEPERE-EFGSAGEAYMKWAAEMAVELNTEV 213 (711)
Q Consensus 142 ~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiE--NEyg~~~~-~~~~~~~~y~~~l~~~~~~~g~~v 213 (711)
+.++. ++...+.+.+.++..+. + |.+.|.+..- +....... ..-..-.+.++.+.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~~--l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAKR--L----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHHH--H----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHHH--h----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE
Confidence 34444 77777788888887773 3 5567777654 22211100 000123457777888888888654
No 70
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=83.41 E-value=4.1 Score=47.08 Aligned_cols=65 Identities=20% Similarity=0.369 Sum_probs=43.1
Q ss_pred EEecCCCCCHhHHHHHHHHHH-HCCCCEEEEcccCCcC--------C-CCCC--ceeecccchHHHHHHHHHHcCCEEEE
Q 005160 46 GSIHYPRSSHEMWEGLIQKAK-DGGLDVIDTYVFWNVH--------E-PSPG--NYNFEGRYDLVRFIKLVQKAGLYVHL 113 (711)
Q Consensus 46 g~~Hy~r~~~~~W~~~l~k~K-a~G~NtV~~yv~Wn~h--------E-p~~G--~ydF~g~~dl~~fl~la~~~GL~vil 113 (711)
|+-|..-.-++.|+..|+.++ +.||..|++ |++. + ..+| .|||+ .|+.+++...++||+.++
T Consensus 29 ~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~v 102 (486)
T PF01229_consen 29 GSGRANLLLRADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFV 102 (486)
T ss_dssp EES-GGGGGBHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEE
T ss_pred CCCchHHHhhHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEE
Confidence 445555567788999999997 579999997 3322 1 1233 29999 999999999999999887
Q ss_pred ecC
Q 005160 114 RIG 116 (711)
Q Consensus 114 r~G 116 (711)
..|
T Consensus 103 el~ 105 (486)
T PF01229_consen 103 ELG 105 (486)
T ss_dssp EE-
T ss_pred EEE
Confidence 765
No 71
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=83.37 E-value=1.1 Score=52.39 Aligned_cols=28 Identities=43% Similarity=0.656 Sum_probs=25.9
Q ss_pred ccCCCCCCCCCCcCCCCCchhhHHHHHH
Q 005160 308 ITTSYDYDAPIDEYGLIREPKYGHLKKL 335 (711)
Q Consensus 308 ~~TSYDy~Apl~E~G~~~~pky~~lr~l 335 (711)
..|||||+||+.|+|+++++||.++|..
T Consensus 325 ~hts~d~~ep~lv~gd~~~~kyg~~~~~ 352 (649)
T KOG0496|consen 325 LHTSYDYCEPALVAGDITTAKYGNLREA 352 (649)
T ss_pred chhhhhhcCccccccCcccccccchhhH
Confidence 6899999999999999889999999954
No 72
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=82.91 E-value=2.1 Score=50.14 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=40.4
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCc-----CCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 59 EGLIQKAKDGGLDVIDT-YVF-------WNV-----HEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 59 ~~~l~k~Ka~G~NtV~~-yv~-------Wn~-----hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
.++|..+|++|+|+|.. .|+ |.+ ..+.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46789999999999996 342 422 22222 35556799999999999999999874
No 73
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=82.18 E-value=23 Score=39.81 Aligned_cols=90 Identities=12% Similarity=0.108 Sum_probs=53.2
Q ss_pred HhHHHHHHHHHHHCCCCEEEEc----ccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEE-ecCcccccccCCCCCC
Q 005160 55 HEMWEGLIQKAKDGGLDVIDTY----VFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHL-RIGPYICAEWNFGGFP 129 (711)
Q Consensus 55 ~~~W~~~l~k~Ka~G~NtV~~y----v~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vil-r~GPyicaEw~~GG~P 129 (711)
+....+++++++++|+..|+.. ++|..-..+. ..++.++-++++++||.|.. -++-+.+..|..|+
T Consensus 31 ~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~-------~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~-- 101 (382)
T TIGR02631 31 ALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER-------DQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGG-- 101 (382)
T ss_pred CcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH-------HHHHHHHHHHHHHhCCeEEEeeccccCCccccCCC--
Confidence 3456799999999999999963 1221111100 23578899999999999763 33211111122222
Q ss_pred cEeeecCCeeeccCChhHHHHHHHHHHHHHHHhh
Q 005160 130 VWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMK 163 (711)
Q Consensus 130 ~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 163 (711)
+-+.|+..+++.-+.+++.++.-+
T Consensus 102 ----------las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 102 ----------FTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344567666665555566666555
No 74
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=81.98 E-value=1.5 Score=45.91 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=38.8
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCCC--ceee-------cccchHHHHHHHHHHcCCEEEEec
Q 005160 59 EGLIQKAKDGGLDVIDTYVFWNVHEPSPG--NYNF-------EGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 59 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G--~ydF-------~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
.+.|..+|++|+|+|.+-=++......-| .-|| ....++.++++.|+++||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 46788999999999997433321110111 1122 334599999999999999999764
No 75
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.66 E-value=15 Score=38.79 Aligned_cols=129 Identities=14% Similarity=0.204 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCcEeeec
Q 005160 57 MWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVH-LRIGPYICAEWNFGGFPVWLKFV 135 (711)
Q Consensus 57 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi-lr~GPyicaEw~~GG~P~WL~~~ 135 (711)
-|++.++.++++|+..|+..+. ..++ ....++++ ..+++++.++++++||.|. +.++... .+
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~~-------~~------- 84 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAHR-------RF------- 84 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEeccccc-------cc-------
Confidence 5999999999999999999432 1111 01112333 2368899999999999875 3322110 00
Q ss_pred CCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccCcccccC---chhHHHHHHHHHHHHHcCCC
Q 005160 136 QGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEFG---SAGEAYMKWAAEMAVELNTE 212 (711)
Q Consensus 136 p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~---~~~~~y~~~l~~~~~~~g~~ 212 (711)
.+-+.|+.-++...+.+++.++..+ .+ |.++|.+.-. +... ..... ..-.+.++.|.+.+++.|+.
T Consensus 85 ---~~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~~~-~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~GV~ 153 (283)
T PRK13209 85 ---PLGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLAGY-DVYY-EQANNETRRRFIDGLKESVELASRASVT 153 (283)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCc-cccc-cccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 0123455566666777777777666 33 4566655310 0000 00000 01134667777888887775
Q ss_pred c
Q 005160 213 V 213 (711)
Q Consensus 213 v 213 (711)
+
T Consensus 154 i 154 (283)
T PRK13209 154 L 154 (283)
T ss_pred E
Confidence 4
No 76
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=79.64 E-value=2.7 Score=44.13 Aligned_cols=52 Identities=21% Similarity=0.471 Sum_probs=39.1
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 005160 55 HEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 55 ~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 116 (711)
+...++.|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++||.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 566789999999999999998 45555544 23677999999999999999987
No 77
>PLN02960 alpha-amylase
Probab=79.36 E-value=3.6 Score=50.40 Aligned_cols=54 Identities=24% Similarity=0.323 Sum_probs=40.4
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------CCcC-----CCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 59 EGLIQKAKDGGLDVIDT-YVF-------WNVH-----EPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 59 ~~~l~k~Ka~G~NtV~~-yv~-------Wn~h-----Ep~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
++.|..+|++|+|+|+. .|+ |.+. .|.+ .|....+|.+|++.|+++||.|||-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~---~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSS---RFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45699999999999996 343 4322 1111 34456799999999999999999874
No 78
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=78.14 E-value=3.7 Score=48.65 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=42.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-ccc-------CCcC-----CCCCCceeecccchHHHHHHHHHHcCCEEEEe
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDT-YVF-------WNVH-----EPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLR 114 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~-yv~-------Wn~h-----Ep~~G~ydF~g~~dl~~fl~la~~~GL~vilr 114 (711)
..+.=.+.|..+|+||+++|+. .|. |.+- -|.. .|....||.+|++.|+++||-|||-
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s---ryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS---RYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc---cCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 4555678899999999999996 332 5332 1221 3444569999999999999999986
No 79
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=77.99 E-value=9.1 Score=43.00 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=43.3
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 53 SSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
...+.|+++|+.+|++||+.....+- - ...+.- ..|...++.|++.|++++|-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig----~--~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG----S--SDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc----c--CCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 48899999999999999999999543 1 112222 378888999999999999997
No 80
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=77.37 E-value=42 Score=35.12 Aligned_cols=129 Identities=14% Similarity=0.156 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEE-ecCcccccccCCCCCCcEeeec
Q 005160 57 MWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHL-RIGPYICAEWNFGGFPVWLKFV 135 (711)
Q Consensus 57 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vil-r~GPyicaEw~~GG~P~WL~~~ 135 (711)
.+++.|+.++++|++.|++..-. .|+-.+ +++ ..++.++-++++++||.|.. .++ .+++|..+.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s~~~~--------~~~~~~~~~-- 78 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIGYTPE--------TNGYPYNMM-- 78 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEEecCc--------ccCcCcccc--
Confidence 48999999999999999983211 011011 121 23688899999999999753 221 123333221
Q ss_pred CCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccC-cc-CcccccCchhHHHHHHHHHHHHHcCCCc
Q 005160 136 QGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENE-YE-PEREEFGSAGEAYMKWAAEMAVELNTEV 213 (711)
Q Consensus 136 p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENE-yg-~~~~~~~~~~~~y~~~l~~~~~~~g~~v 213 (711)
..++.-+++..+.+++.++.-+ .+ |.+.|.+-.... +. .....+ ..-.+.++.|.+.+++.|+.+
T Consensus 79 ------~~~~~~r~~~~~~~~~~i~~a~--~l----Ga~~i~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 ------LGDEHMRRESLDMIKLAMDMAK--EM----NAGYTLISAAHAGYLTPPNVIW-GRLAENLSELCEYAENIGMDL 145 (275)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEcCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHcCCEE
Confidence 1234444444555555555444 22 445554422111 00 000000 122346788888888887654
No 81
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=77.16 E-value=11 Score=41.25 Aligned_cols=112 Identities=18% Similarity=0.253 Sum_probs=69.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcc-------cCCcCCCCCCceeec-c-cchHHHHHHHHHHcCCEEEEecCcccccccC
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYV-------FWNVHEPSPGNYNFE-G-RYDLVRFIKLVQKAGLYVHLRIGPYICAEWN 124 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv-------~Wn~hEp~~G~ydF~-g-~~dl~~fl~la~~~GL~vilr~GPyicaEw~ 124 (711)
.++.-++.|+.+|+.|+|+|-+=| .+....|..-+..-. . ..|+.++++.++++|+++|.|+=-+- ...-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk-D~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK-DPVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec-ChHH
Confidence 456788999999999999987633 343333322222111 1 36999999999999999999963211 0000
Q ss_pred CCCCCcEeeec-CCeeeccCC-----hhHHHHHHHHHHHHHHHhhhcc
Q 005160 125 FGGFPVWLKFV-QGISFRTDN-----KPFKHAMQNFTQKIVLMMKDEK 166 (711)
Q Consensus 125 ~GG~P~WL~~~-p~~~~R~~d-----~~y~~~~~~~~~~l~~~~~~~~ 166 (711)
....|.|-.+. .+-..|..+ .+|.+++.+|.-.|++..+...
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 11145565532 121122111 2578999999999998888544
No 82
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=77.12 E-value=3.6 Score=48.20 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=42.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCCc---CCCCCCce-----eecccchHHHHHHHHHHcCCEEEEec
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDT-YVFWNV---HEPSPGNY-----NFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~-yv~Wn~---hEp~~G~y-----dF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
.-.-+.++|..+|++|+|+|-+ .++-+- |--.+..| .|....+|.++++.|+++||+|||-.
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3445778899999999999987 343221 11011111 14455699999999999999999874
No 83
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=75.94 E-value=6.7 Score=42.86 Aligned_cols=72 Identities=26% Similarity=0.284 Sum_probs=58.8
Q ss_pred EEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCc-eeecccchHHHHHHHHHHcCCEEEEecCcccccc
Q 005160 44 FSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGN-YNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAE 122 (711)
Q Consensus 44 ~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~-ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaE 122 (711)
++=++.+.|.+.+.=...|++|...|+.-|=| ++|.|++.. --|. -+.++++.|+++||+||+-.-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 45567778889998999999999999999988 999988742 1122 677899999999999999987776544
No 84
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=75.91 E-value=46 Score=34.84 Aligned_cols=101 Identities=12% Similarity=0.137 Sum_probs=64.0
Q ss_pred EEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCc-eeecccchHHHHHHHHHHcCCEEEEecCcccccccC
Q 005160 46 GSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGN-YNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWN 124 (711)
Q Consensus 46 g~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~-ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~ 124 (711)
|..+..+-+ -++.|+.+.++|++.|+. ...+|..-. -+++ ..+++++.++++++||.+.+- +||.
T Consensus 3 g~~~~~~~~---~~~~~~~~~~~G~~~vel----~~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----- 68 (273)
T smart00518 3 GAHVSAAGG---LYKAFIEAVDIGARSFQL----FLGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----- 68 (273)
T ss_pred eEEEcccCc---HhHHHHHHHHcCCCEEEE----ECCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----
Confidence 444444544 347899999999999999 444443211 0222 236889999999999986542 3432
Q ss_pred CCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEec
Q 005160 125 FGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQ 179 (711)
Q Consensus 125 ~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Q 179 (711)
+ .+.+.|+..+++..+++++.++..+ .+ |.++|.+.
T Consensus 69 -------~------nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -------I------NLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -------e------cCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 1 2445677777777777777777666 33 45555554
No 85
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=75.91 E-value=42 Score=37.87 Aligned_cols=89 Identities=16% Similarity=0.213 Sum_probs=58.8
Q ss_pred cCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCC----Cceeeccc---chHHHHHHHHHHcCCEEEEecCccccc
Q 005160 49 HYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSP----GNYNFEGR---YDLVRFIKLVQKAGLYVHLRIGPYICA 121 (711)
Q Consensus 49 Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~----G~ydF~g~---~dl~~fl~la~~~GL~vilr~GPyica 121 (711)
.|+.++.+.-.+.+++++++|++.+.+==-|....... |.+.-+-. .-|..+.+.+++.||+.=|+..|.+++
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 46778889999999999999999887766686542222 33322211 248999999999999999888887653
Q ss_pred ccC--CCCCCcEeeecCC
Q 005160 122 EWN--FGGFPVWLKFVQG 137 (711)
Q Consensus 122 Ew~--~GG~P~WL~~~p~ 137 (711)
+=. .-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 211 2347999987554
No 86
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=75.89 E-value=4.3 Score=48.25 Aligned_cols=55 Identities=20% Similarity=0.380 Sum_probs=37.6
Q ss_pred HHHHHHHHCCCCEEEE-ccc---------------CCcCC-----CCCCcee----ec--ccchHHHHHHHHHHcCCEEE
Q 005160 60 GLIQKAKDGGLDVIDT-YVF---------------WNVHE-----PSPGNYN----FE--GRYDLVRFIKLVQKAGLYVH 112 (711)
Q Consensus 60 ~~l~k~Ka~G~NtV~~-yv~---------------Wn~hE-----p~~G~yd----F~--g~~dl~~fl~la~~~GL~vi 112 (711)
+.|..+|++|+|+|++ +|+ |.+.- |++ .|- |. ...++.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~-~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEG-SYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcCh-hhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999996 343 32221 111 111 11 12689999999999999999
Q ss_pred Eec
Q 005160 113 LRI 115 (711)
Q Consensus 113 lr~ 115 (711)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 874
No 87
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=75.15 E-value=59 Score=33.66 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEE
Q 005160 57 MWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHL 113 (711)
Q Consensus 57 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vil 113 (711)
-+++.+++++++|++.|+...++ ..++.++.++++++||.+..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 38899999999999999984321 12678899999999999764
No 88
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=75.07 E-value=7.4 Score=41.99 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=49.0
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCceeecccc--hHHHHHHHHHHcCCEEEEecCcccc
Q 005160 53 SSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPS-PGNYNFEGRY--DLVRFIKLVQKAGLYVHLRIGPYIC 120 (711)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~ydF~g~~--dl~~fl~la~~~GL~vilr~GPyic 120 (711)
...+..++.++++|+.|+.+=.+.+-..++... -+.|.|...+ |..++++..+++|++|++..=|+|+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 477888999999999996654444332223221 1356555433 8999999999999999999878775
No 89
>PRK10785 maltodextrin glucosidase; Provisional
Probab=73.37 E-value=6.9 Score=46.48 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=41.0
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCC--cCCCCCCce-----eecccchHHHHHHHHHHcCCEEEEec
Q 005160 58 WEGLIQKAKDGGLDVIDT-YVFWN--VHEPSPGNY-----NFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 58 W~~~l~k~Ka~G~NtV~~-yv~Wn--~hEp~~G~y-----dF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
-.+.|..+|++|+|+|-+ +||=+ .|---...| .|.+..+|.++++.|++.||+|||-.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 357899999999999997 45522 121111111 24455799999999999999999764
No 90
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=73.12 E-value=7.5 Score=40.70 Aligned_cols=53 Identities=15% Similarity=0.367 Sum_probs=43.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 116 (711)
.....++.++.+|+.||++|++ ..|..+++ ..+..++++.++++||.|+-..|
T Consensus 69 ~q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 69 SKGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred HhhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEecccc
Confidence 3467788999999999999998 45666655 23777999999999999998887
No 91
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=72.94 E-value=28 Score=39.06 Aligned_cols=139 Identities=15% Similarity=0.187 Sum_probs=70.1
Q ss_pred HHCCCCEEEEccc---------------CCcCC---CCCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCC
Q 005160 66 KDGGLDVIDTYVF---------------WNVHE---PSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGG 127 (711)
Q Consensus 66 Ka~G~NtV~~yv~---------------Wn~hE---p~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG 127 (711)
|-+|||.+|..|- |-.-| +..|.|||+....=+.||+.|++.|+..++-. .=-
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNS 127 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNS 127 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecC
Confidence 4588998887663 32222 56789999987777789999999999977653 122
Q ss_pred CCcEeeecCCe----eeccC-ChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccCcc-------cccC-ch
Q 005160 128 FPVWLKFVQGI----SFRTD-NKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPER-------EEFG-SA 194 (711)
Q Consensus 128 ~P~WL~~~p~~----~~R~~-d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~-------~~~~-~~ 194 (711)
.|.|+...... ....+ .+...++...|+..++++++.+ |=+|=-+--=||..... |.+. ..
T Consensus 128 PP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~------GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e 201 (384)
T PF14587_consen 128 PPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKW------GINFDYISPFNEPQWNWAGGSQEGCHFTNEE 201 (384)
T ss_dssp S-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCT------T--EEEEE--S-TTS-GG--SS-B----HHH
T ss_pred CCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhc------CCccceeCCcCCCCCCCCCCCcCCCCCCHHH
Confidence 56666542210 00000 2345677778888888888633 33555555668875321 1111 23
Q ss_pred hHHHHHHHHHHHHHcCCCcceeecC
Q 005160 195 GEAYMKWAAEMAVELNTEVPWVMCK 219 (711)
Q Consensus 195 ~~~y~~~l~~~~~~~g~~vp~~~~~ 219 (711)
..+.++.|...+++.|+..-+..|+
T Consensus 202 ~a~vI~~L~~~L~~~GL~t~I~~~E 226 (384)
T PF14587_consen 202 QADVIRALDKALKKRGLSTKISACE 226 (384)
T ss_dssp HHHHHHHHHHHHHHHT-S-EEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCceEEecc
Confidence 4678899999999999986555444
No 92
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=72.92 E-value=11 Score=48.33 Aligned_cols=92 Identities=15% Similarity=0.258 Sum_probs=57.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-ccc-CC---cCCCCCCcee----e----cccchHHHHHHHHHHc-CCEEEEecCccc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDT-YVF-WN---VHEPSPGNYN----F----EGRYDLVRFIKLVQKA-GLYVHLRIGPYI 119 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~-yv~-Wn---~hEp~~G~yd----F----~g~~dl~~fl~la~~~-GL~vilr~GPyi 119 (711)
+-+.|+++|+.+|++|+|+|-. .++ =. ..=...+++. | .+..|+.++++.|++. ||++|+-.
T Consensus 130 ~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv---- 205 (1464)
T TIGR01531 130 PLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI---- 205 (1464)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe----
Confidence 5588999999999999999985 343 11 1001122222 3 2557899999999986 99999763
Q ss_pred ccccCCCCC-CcEeeecCCeeeccCChhHHHHH
Q 005160 120 CAEWNFGGF-PVWLKFVQGISFRTDNKPFKHAM 151 (711)
Q Consensus 120 caEw~~GG~-P~WL~~~p~~~~R~~d~~y~~~~ 151 (711)
=|+.-+. =.||...|+.-....+.++++..
T Consensus 206 --V~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A 236 (1464)
T TIGR01531 206 --VFNHTANNSPWLLEHPEAAYNCITSPHLRPA 236 (1464)
T ss_pred --eecccccCCHHHHhChHhhcCCCCCchhhhH
Confidence 1222221 25787777644444444555433
No 93
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=72.80 E-value=3.7 Score=40.71 Aligned_cols=63 Identities=25% Similarity=0.290 Sum_probs=27.8
Q ss_pred CCceEEEEECCeeeeeeecccccCCccCCccCCCCCCCCCCCCCCCCeeeeeecCccccCCCCcEEEEEEeec
Q 005160 623 SMNKGQVLINGQNIGRYWTAIANGACRNCNYTGTYRPTNCGFDCGKPSQQWYHVPRSWLKPRQNLLIVFEEIS 695 (711)
Q Consensus 623 g~gKG~v~VNG~nlGRYW~~~~~G~~~~~~~~G~y~~~~~~~~~~~PQqtlYhvP~~~Lk~g~N~IvvfE~~~ 695 (711)
.-++=+|.||| ..+..+... .| .++|.+++ .+-+|..+.--+-||+..|++|.|+|.+=-..|
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~-~~-~d~~~~r~-------g~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAP-FG-NDNAIYRS-------GIHRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE-------------S--GGG-------T---S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCccccc-cC-CCCceeeC-------ceecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 34566899999 777766320 11 23444433 122233455556699999999999986543333
No 94
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=72.71 E-value=7.2 Score=45.84 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHCCCCEEEE-cccCCcCCCC-CCce----------eecccchHHHHHHHHHHcCCEEEEec
Q 005160 56 EMWEGLIQKAKDGGLDVIDT-YVFWNVHEPS-PGNY----------NFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~-yv~Wn~hEp~-~G~y----------dF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
.-+.++|..+|++|+++|-+ .|+-+ |. ..-| +|....|+.++++.|+++||+|||-.
T Consensus 33 ~gi~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 33 RGVTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34668899999999999987 34421 11 1122 24445699999999999999999764
No 95
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=71.68 E-value=5.6 Score=46.57 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=41.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCCcCCCCCCce----------eecccchHHHHHHHHHHcCCEEEEe
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDT-YVFWNVHEPSPGNY----------NFEGRYDLVRFIKLVQKAGLYVHLR 114 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~-yv~Wn~hEp~~G~y----------dF~g~~dl~~fl~la~~~GL~vilr 114 (711)
.-.-+.+.|..+|++|+|+|-+ .|+=+-. ....| .|....++.++++.|+++||+|||-
T Consensus 26 dl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~--~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 26 DFPGLTSKLDYLKWLGVDALWLLPFFQSPL--RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred CHHHHHHhHHHHHHCCCCEEEECCCcCCCC--CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3455778999999999999986 3431100 01112 2445569999999999999999985
No 96
>PRK09505 malS alpha-amylase; Reviewed
Probab=71.62 E-value=7.6 Score=46.78 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=41.9
Q ss_pred HHHHHHHHHHCCCCEEEE-cccCCcCCCC----CC------------------ceeecccchHHHHHHHHHHcCCEEEEe
Q 005160 58 WEGLIQKAKDGGLDVIDT-YVFWNVHEPS----PG------------------NYNFEGRYDLVRFIKLVQKAGLYVHLR 114 (711)
Q Consensus 58 W~~~l~k~Ka~G~NtV~~-yv~Wn~hEp~----~G------------------~ydF~g~~dl~~fl~la~~~GL~vilr 114 (711)
+.+.|..+|++|+|+|-+ .++=+.|... .| .-.|....++.++++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 678899999999999986 4543333211 11 112444569999999999999999987
Q ss_pred c
Q 005160 115 I 115 (711)
Q Consensus 115 ~ 115 (711)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 97
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=71.49 E-value=69 Score=33.36 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=37.9
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEE
Q 005160 48 IHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHL 113 (711)
Q Consensus 48 ~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vil 113 (711)
+.|-+.+ ++++|++++++|++.|++. . +. ..+++++.++++++||.+..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 4455555 7789999999999999982 1 11 13789999999999999854
No 98
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=70.19 E-value=55 Score=35.20 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=47.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCC--------CCCCceeecccc--hHHHHHHHHHHcCCEEEEecCcc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHE--------PSPGNYNFEGRY--DLVRFIKLVQKAGLYVHLRIGPY 118 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hE--------p~~G~ydF~g~~--dl~~fl~la~~~GL~vilr~GPy 118 (711)
+.+.-++.++++++.||-+=.+++=...|. ..-+.|.|+..+ |..++++..++.|++|++.+=|+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 677889999999999987655554323322 123467776443 99999999999999999887443
No 99
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=70.11 E-value=23 Score=42.89 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=36.6
Q ss_pred HHHHHHHCCCCEEEE-cccCCcCC---CCCC-----ce---e-------ec---ccchHHHHHHHHHHcCCEEEEec
Q 005160 61 LIQKAKDGGLDVIDT-YVFWNVHE---PSPG-----NY---N-------FE---GRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 61 ~l~k~Ka~G~NtV~~-yv~Wn~hE---p~~G-----~y---d-------F~---g~~dl~~fl~la~~~GL~vilr~ 115 (711)
.|..+|++|+|+|.. .|+=...+ ...| -| | |. ...++.++++.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 478899999999996 45411111 1111 01 1 21 24589999999999999999874
No 100
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=69.86 E-value=1.1e+02 Score=36.28 Aligned_cols=80 Identities=20% Similarity=0.301 Sum_probs=51.0
Q ss_pred HhHHHHHHHHHHHCCCCEEEEc-ccCCcCCCCCCce--------eeccc----chHHHHHHHHHHcCCEEEEecCccccc
Q 005160 55 HEMWEGLIQKAKDGGLDVIDTY-VFWNVHEPSPGNY--------NFEGR----YDLVRFIKLVQKAGLYVHLRIGPYICA 121 (711)
Q Consensus 55 ~~~W~~~l~k~Ka~G~NtV~~y-v~Wn~hEp~~G~y--------dF~g~----~dl~~fl~la~~~GL~vilr~GPyica 121 (711)
++.=++.|..|++.-||.|+.| ..|.||.|-|+.= |+.++ .-+..+|+.|++.||.++.=--=|.+-
T Consensus 117 ~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~ 196 (559)
T PF13199_consen 117 AEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAAN 196 (559)
T ss_dssp HHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEE
T ss_pred chhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccc
Confidence 4677889999999999999999 7899999977543 23332 267899999999999998554333333
Q ss_pred cc--CCCCCCcEeee
Q 005160 122 EW--NFGGFPVWLKF 134 (711)
Q Consensus 122 Ew--~~GG~P~WL~~ 134 (711)
+. ..|-.|.|.+.
T Consensus 197 ~~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 197 NNYEEDGVSPEWGLY 211 (559)
T ss_dssp TT--S--SS-GGBEE
T ss_pred cCcccccCCchhhhh
Confidence 33 35667888875
No 101
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=69.71 E-value=11 Score=31.38 Aligned_cols=32 Identities=9% Similarity=0.281 Sum_probs=24.5
Q ss_pred CcceEEEEEECCEEEEEEeCcccc--eeeEEEee
Q 005160 477 SRGHALHVFVNGQLTGSASGTRTY--KRFTFRGN 508 (711)
Q Consensus 477 ~~~D~~~vfvng~~vG~~~~~~~~--~~~~~~~~ 508 (711)
...|.|.||++++++|++++...+ .++.|++.
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~ 58 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMA 58 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEE
Confidence 568999999999999999986443 44555543
No 102
>PRK09989 hypothetical protein; Provisional
Probab=69.32 E-value=53 Score=34.23 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=33.6
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEE
Q 005160 58 WEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHL 113 (711)
Q Consensus 58 W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vil 113 (711)
.+++|++++++|++.|++..+|. .+..++.++.+++||.|..
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 67999999999999999843322 2466788889999999874
No 103
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=67.54 E-value=18 Score=39.19 Aligned_cols=68 Identities=22% Similarity=0.380 Sum_probs=52.4
Q ss_pred CCCCHhHHHHHHHHHHHCCC--CEEEEcccCCcCCCCCCceeeccc--chHHHHHHHHHHcCCEEEEecCccccc
Q 005160 51 PRSSHEMWEGLIQKAKDGGL--DVIDTYVFWNVHEPSPGNYNFEGR--YDLVRFIKLVQKAGLYVHLRIGPYICA 121 (711)
Q Consensus 51 ~r~~~~~W~~~l~k~Ka~G~--NtV~~yv~Wn~hEp~~G~ydF~g~--~dl~~fl~la~~~GL~vilr~GPyica 121 (711)
..++.+.-++.++++++.|+ .+|.+=..|- ..-|.|.|... -|..++++..++.|+++++..=|+|+.
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 45788889999999999996 4666555563 33466666533 389999999999999999998888753
No 104
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=67.09 E-value=27 Score=37.22 Aligned_cols=77 Identities=23% Similarity=0.366 Sum_probs=60.3
Q ss_pred cEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec--ccchHHHHHHHHHHcCCE
Q 005160 33 ALIINGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFE--GRYDLVRFIKLVQKAGLY 110 (711)
Q Consensus 33 ~f~~dGkp~~~~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~--g~~dl~~fl~la~~~GL~ 110 (711)
.+.+.|.+++++.|=+=-. .++.-.+.-+++|++|+..++.|.+=+...| +.|. |...+..+-+.|++.||.
T Consensus 20 ~~~~g~~~~~~iaGPCsie--~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~----~s~~G~g~~gl~~l~~~~~~~Gl~ 93 (266)
T PRK13398 20 DVVIGGEEKIIIAGPCAVE--SEEQMVKVAEKLKELGVHMLRGGAFKPRTSP----YSFQGLGEEGLKILKEVGDKYNLP 93 (266)
T ss_pred CEEEcCCCEEEEEeCCcCC--CHHHHHHHHHHHHHcCCCEEEEeeecCCCCC----CccCCcHHHHHHHHHHHHHHcCCC
Confidence 3677767999999865332 5777888999999999999999988744442 3555 467888899999999999
Q ss_pred EEEec
Q 005160 111 VHLRI 115 (711)
Q Consensus 111 vilr~ 115 (711)
++-.|
T Consensus 94 ~~te~ 98 (266)
T PRK13398 94 VVTEV 98 (266)
T ss_pred EEEee
Confidence 98776
No 105
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=65.83 E-value=51 Score=34.59 Aligned_cols=96 Identities=18% Similarity=0.398 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCC--CceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEee
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPSP--GNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLK 133 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~--G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~ 133 (711)
--|+++|.-+|++||+-|+. +.-|..+ -+.||+.. ....+..++++.|+.+ |-+| |.
T Consensus 18 ~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~~-er~~l~~ai~etgv~i-----pSmC-----------lS 76 (287)
T COG3623 18 FSWLERLALAKELGFDFVEM----SVDESDERLARLDWSKE-ERLALVNAIQETGVRI-----PSMC-----------LS 76 (287)
T ss_pred CCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCHH-HHHHHHHHHHHhCCCc-----cchh-----------hh
Confidence 45999999999999999999 7777644 36788732 3346678889999832 2233 11
Q ss_pred ecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEecc
Q 005160 134 FVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQI 180 (711)
Q Consensus 134 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Qi 180 (711)
.+...-+-+.|+.-++..-..+.+-+..-. .+ .|=-+|+
T Consensus 77 aHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQL 115 (287)
T COG3623 77 AHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQL 115 (287)
T ss_pred hhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEee
Confidence 111112457899888888877777665544 34 3556676
No 106
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=63.85 E-value=1.4e+02 Score=31.55 Aligned_cols=65 Identities=14% Similarity=0.262 Sum_probs=49.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCce--eeccc--chHHHHHHHHHHcCCEEEEecCccc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNY--NFEGR--YDLVRFIKLVQKAGLYVHLRIGPYI 119 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~y--dF~g~--~dl~~fl~la~~~GL~vilr~GPyi 119 (711)
..+..++.++.+++.||-.=.+.+-+.+... .+.| +|... -|..++++..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 7788899999999999886555554444432 3555 55432 3899999999999999999987777
No 107
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=61.62 E-value=12 Score=48.13 Aligned_cols=56 Identities=29% Similarity=0.416 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCCEEEE-cccCCcCCCC---CCc-----e----------eec--ccchHHHHHHHHHHcCCEEEEec
Q 005160 60 GLIQKAKDGGLDVIDT-YVFWNVHEPS---PGN-----Y----------NFE--GRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 60 ~~l~k~Ka~G~NtV~~-yv~Wn~hEp~---~G~-----y----------dF~--g~~dl~~fl~la~~~GL~vilr~ 115 (711)
+.|..+|++|+|+|.. .|+=+..|.. .|. | .|. ...++.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4577999999999996 4542221111 110 2 233 56789999999999999999874
No 108
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=60.93 E-value=19 Score=44.15 Aligned_cols=64 Identities=19% Similarity=0.191 Sum_probs=45.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cccCC----cCCCCC---C--ceeecccchHHHHHHHHHHcCCEEEEecCc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDT-YVFWN----VHEPSP---G--NYNFEGRYDLVRFIKLVQKAGLYVHLRIGP 117 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~-yv~Wn----~hEp~~---G--~ydF~g~~dl~~fl~la~~~GL~vilr~GP 117 (711)
+-+.+.+.|..++++|+++|-+ .++=+ .|--.. . .-.|.+..++.+|++.|+++||.||+-.=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 5567999999999999999976 33311 111000 0 113556789999999999999999987544
No 109
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=60.91 E-value=3.2 Score=43.08 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=42.6
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 59 EGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 59 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
-...+.+.++|.+.|.+.++|..-.+..-.+... ++.++.+.|++.||.||+.+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE~ 132 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILEP 132 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEEE
Confidence 4567889999999999999996655444333333 89999999999999999993
No 110
>PLN02361 alpha-amylase
Probab=60.56 E-value=19 Score=40.70 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=39.4
Q ss_pred HHHHHHHHHCCCCEEEEcccCC---cCCCCCCc-e----eecccchHHHHHHHHHHcCCEEEEec
Q 005160 59 EGLIQKAKDGGLDVIDTYVFWN---VHEPSPGN-Y----NFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 59 ~~~l~k~Ka~G~NtV~~yv~Wn---~hEp~~G~-y----dF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
.+.|..+|++|+++|-+.=+.. .|--.+.. | .|....+|.++++.|+++||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4677888999999998753321 12111221 2 23445699999999999999999764
No 111
>PRK12677 xylose isomerase; Provisional
Probab=60.26 E-value=57 Score=36.70 Aligned_cols=89 Identities=11% Similarity=0.113 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec---ccchHHHHHHHHHHcCCEEE-EecCcccccccCCCCCCcEe
Q 005160 57 MWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFE---GRYDLVRFIKLVQKAGLYVH-LRIGPYICAEWNFGGFPVWL 132 (711)
Q Consensus 57 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~---g~~dl~~fl~la~~~GL~vi-lr~GPyicaEw~~GG~P~WL 132 (711)
.+++.+++++++|+..|+.. .+..--|+.+ ....+.++.+++++.||.|. +-+.-|.+..+..|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g------ 99 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG------ 99 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC------
Confidence 47899999999999999883 1111111111 11358899999999999976 44432211112222
Q ss_pred eecCCeeeccCChhHHHHHHHHHHHHHHHhh
Q 005160 133 KFVQGISFRTDNKPFKHAMQNFTQKIVLMMK 163 (711)
Q Consensus 133 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 163 (711)
.+-+.|+..++...+.+.+.++.-+
T Consensus 100 ------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 ------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2445577777776666666666555
No 112
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=60.03 E-value=9.3 Score=37.81 Aligned_cols=53 Identities=23% Similarity=0.509 Sum_probs=30.3
Q ss_pred EEeeCCCceEEEEECCeeeeeeecccccCCccCCccCCCCCCCCCCCCCCCCeeeeeecC---ccccCCCCcEEEEE
Q 005160 618 AMDMSSMNKGQVLINGQNIGRYWTAIANGACRNCNYTGTYRPTNCGFDCGKPSQQWYHVP---RSWLKPRQNLLIVF 691 (711)
Q Consensus 618 ~Ld~~g~gKG~v~VNG~nlGRYW~~~~~G~~~~~~~~G~y~~~~~~~~~~~PQqtlYhvP---~~~Lk~g~N~Ivvf 691 (711)
.|..++.|+=.+||||+.+|+--.. .|.. .| +...+| .- .++|++|+|.|.|.
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~l~--P~~t-------~y-----------~~~~~Y-~tyDVt~~L~~G~N~iav~ 62 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGPLA--PGWT-------DY-----------DKRVYY-QTYDVTPYLRPGENVIAVW 62 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE-----------------B-----------TTEEEE-EEEE-TTT--TTEEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCCccc--cccc-------cC-----------CCceEE-EEEeChHHhCCCCCEEEEE
Confidence 4566667788899999999984311 1100 01 222222 33 67999999998875
No 113
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=59.93 E-value=28 Score=28.32 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=42.3
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEE
Q 005160 55 HEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHL 113 (711)
Q Consensus 55 ~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vil 113 (711)
|..-.+.++.+.+.|+|..++|++ .++. ++.+.+.. .|.++..+..+++|+.|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~--~~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIA--DTSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEE--ecCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 345667889999999999999973 2333 58777765 4778999999999998754
No 114
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=59.84 E-value=17 Score=31.74 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=32.4
Q ss_pred eeeeCCcceEEEEEECCEEEEEEeCcccceeeEEEeeeec-cCCccEEEEEEecCCcc
Q 005160 472 TLSVQSRGHALHVFVNGQLTGSASGTRTYKRFTFRGNVNL-HAGVNTISLLSIAVGLP 528 (711)
Q Consensus 472 ~L~i~~~~D~~~vfvng~~vG~~~~~~~~~~~~~~~~~~l-~~g~~~L~ILven~Gr~ 528 (711)
.|++.+-...++-||||+++|...... .+. ..+ ..|.++|.+ +...|+.
T Consensus 35 ~l~a~~~~~~~~W~vdg~~~g~~~~~~---~~~----~~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 35 VLKAAGGRGPVYWFVDGEPLGTTQPGH---QLF----WQPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEeCCCCcEEEEECCEEcccCCCCC---eEE----eCCCCCeeEEEEE-EcCCCCE
Confidence 455554466999999999998765431 222 234 678888877 6666653
No 115
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=59.23 E-value=9 Score=31.81 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=17.4
Q ss_pred eeeeCCcceEEEEEECCEEEEE
Q 005160 472 TLSVQSRGHALHVFVNGQLTGS 493 (711)
Q Consensus 472 ~L~i~~~~D~~~vfvng~~vG~ 493 (711)
.|.|.+.-.-|.|||||+++|.
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~ 24 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGT 24 (71)
T ss_pred EEEEEEECCCCEEEECCEEecc
Confidence 4666666667899999999994
No 116
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=59.00 E-value=16 Score=31.85 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=24.1
Q ss_pred CCCceEEeccccC-ccCcccccC-----chhHHHHHH---HHHHHHHcCCCcceee
Q 005160 171 QGGPIILSQIENE-YEPEREEFG-----SAGEAYMKW---AAEMAVELNTEVPWVM 217 (711)
Q Consensus 171 ~gGpII~~QiENE-yg~~~~~~~-----~~~~~y~~~---l~~~~~~~g~~vp~~~ 217 (711)
+..-|.+|+|-|| -++....+. .....|.+| +.+.+|+.+++.|+..
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 3468999999999 552211111 112344444 4455667788888744
No 117
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=58.34 E-value=15 Score=38.93 Aligned_cols=57 Identities=23% Similarity=0.273 Sum_probs=41.4
Q ss_pred ccccccCCC---CCCccEEEEEEEecCCCCCcccCCCCCCeeeeCCcceEEEEEECCEEEE
Q 005160 435 GLLEQLNVT---RDTSDYLWCSTSVNISSSDSFLHGGERPTLSVQSRGHALHVFVNGQLTG 492 (711)
Q Consensus 435 ~~mEql~~t---~d~~gy~~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~~~vfvng~~vG 492 (711)
.++-.+++. .|-+|-+||+.++.++.+. ....+.+..|++.++|-+|.|+|||.-+=
T Consensus 72 ss~nDi~~d~~lrdfv~~~wyer~v~vpe~w-~~~~~~r~vlr~~s~H~~Aivwvng~~~~ 131 (297)
T KOG2024|consen 72 SSFNDIGQDWRLRDFVGLVWYERTVTVPESW-TQDLGKRVVLRIGSAHSYAIVWVNGVDAL 131 (297)
T ss_pred cchhccccCCccccceeeeEEEEEEEcchhh-hhhcCCeEEEEeecccceeEEEEcceeec
Confidence 345555552 4668999999999876443 12345567899999999999999997543
No 118
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=58.24 E-value=36 Score=33.68 Aligned_cols=56 Identities=21% Similarity=0.231 Sum_probs=30.8
Q ss_pred CeeeeCCcceEEEEEECCEEEEEEe----Cc-ccce--eeEEEeeeeccCCccEEEEEEecCCc
Q 005160 471 PTLSVQSRGHALHVFVNGQLTGSAS----GT-RTYK--RFTFRGNVNLHAGVNTISLLSIAVGL 527 (711)
Q Consensus 471 ~~L~i~~~~D~~~vfvng~~vG~~~----~~-~~~~--~~~~~~~~~l~~g~~~L~ILven~Gr 527 (711)
..|.|...+ +-.+||||+.||... .. .... -.++.+.--|+.|.|+|.+++-+...
T Consensus 6 A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 356665544 558899999999654 11 1111 11234443478899999999976443
No 119
>PRK03705 glycogen debranching enzyme; Provisional
Probab=57.32 E-value=17 Score=43.78 Aligned_cols=55 Identities=25% Similarity=0.371 Sum_probs=36.3
Q ss_pred HHHHHHHCCCCEEEE-cccCCcCCCCC---C-----ce----------eecc-----cchHHHHHHHHHHcCCEEEEec
Q 005160 61 LIQKAKDGGLDVIDT-YVFWNVHEPSP---G-----NY----------NFEG-----RYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 61 ~l~k~Ka~G~NtV~~-yv~Wn~hEp~~---G-----~y----------dF~g-----~~dl~~fl~la~~~GL~vilr~ 115 (711)
.|..+|++|+|+|.. +|+=...++.. | -| .|.. ..++.++++.|+++||.|||-.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 588999999999996 34311111100 0 01 1222 1479999999999999999874
No 120
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=56.38 E-value=68 Score=34.72 Aligned_cols=105 Identities=11% Similarity=0.095 Sum_probs=61.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc----CCcC-CC--CCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCC
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVF----WNVH-EP--SPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFG 126 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~----Wn~h-Ep--~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~G 126 (711)
+.++-++.++.|...|+|++..|+- +.-+ |- .+|.|-= .++.++++.|+++|+.||-.+--.-+.|+-.
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l- 90 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQTLGHLEFIL- 90 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCCCHHHHHHHH-
Confidence 5688899999999999999998763 3222 11 1333332 3999999999999999997643223444311
Q ss_pred CCCcEe--eecC--CeeeccCChhHHHHHHHHHHHHHHHh
Q 005160 127 GFPVWL--KFVQ--GISFRTDNKPFKHAMQNFTQKIVLMM 162 (711)
Q Consensus 127 G~P~WL--~~~p--~~~~R~~d~~y~~~~~~~~~~l~~~~ 162 (711)
..|... ...+ .-.+...+|.-.+-+++.++++++.+
T Consensus 91 ~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f 130 (301)
T cd06565 91 KHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELH 130 (301)
T ss_pred hCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 112111 1111 11234445555555555555555544
No 121
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=56.26 E-value=26 Score=38.18 Aligned_cols=65 Identities=12% Similarity=0.222 Sum_probs=48.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCC--ceeecccc--hHHHHHHHHHHcCCEEEEecCccc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPG--NYNFEGRY--DLVRFIKLVQKAGLYVHLRIGPYI 119 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G--~ydF~g~~--dl~~fl~la~~~GL~vilr~GPyi 119 (711)
..+.-++.++++++.||-+=.+.+=|.+.. ..+ .|.|+..+ |..+|++..++.|++|++..=|+|
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v 90 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTF 90 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCc
Confidence 677788999999999877655544444333 234 67776544 999999999999999998876666
No 122
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=56.16 E-value=40 Score=37.27 Aligned_cols=76 Identities=18% Similarity=0.300 Sum_probs=57.5
Q ss_pred cEEECCEEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecc--cchHHHHHHHHHHcCC
Q 005160 33 ALIINGQRRILFSGSIHYPRS-SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEG--RYDLVRFIKLVQKAGL 109 (711)
Q Consensus 33 ~f~~dGkp~~~~sg~~Hy~r~-~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g--~~dl~~fl~la~~~GL 109 (711)
.+.+.|.++.+++| +-.+ .++.-.+.-+.+|++|.+.++.|+|=+... -|.|.| ..-|..+.+.|++.||
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTs----p~sf~G~g~~gL~~L~~~~~~~Gl 158 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFKPRTS----PYSFQGLGEEGLKLLAEAREETGL 158 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEecCCCC----CcccccccHHHHHHHHHHHHHcCC
Confidence 46777788888988 3233 577777888899999999999998853333 367765 4567777778999999
Q ss_pred EEEEec
Q 005160 110 YVHLRI 115 (711)
Q Consensus 110 ~vilr~ 115 (711)
.++-.+
T Consensus 159 ~v~tev 164 (335)
T PRK08673 159 PIVTEV 164 (335)
T ss_pred cEEEee
Confidence 998876
No 123
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=55.87 E-value=27 Score=43.24 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=45.5
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEc-ccCCcCCCCCCc---e----------eecccchHHHHHHHHHHcCCEEEEecCc
Q 005160 53 SSHEMWEGLIQKAKDGGLDVIDTY-VFWNVHEPSPGN---Y----------NFEGRYDLVRFIKLVQKAGLYVHLRIGP 117 (711)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~NtV~~y-v~Wn~hEp~~G~---y----------dF~g~~dl~~fl~la~~~GL~vilr~GP 117 (711)
.+-+.+.+.|..++++|+|+|-+- ++ +..+|. | .|.+..++.+|++.|+++||.|||-.=|
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 355779999999999999999863 32 111221 1 2346679999999999999999987644
No 124
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=55.48 E-value=23 Score=41.15 Aligned_cols=113 Identities=15% Similarity=0.176 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCC---CCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEee
Q 005160 57 MWEGLIQKAKDGGLDVIDTYVFWNVHEPS---PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLK 133 (711)
Q Consensus 57 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~---~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~ 133 (711)
.++++++.||++|+++-+.-|-|+..=|. .+.-+=.|...-..+|+...++|+..++-. | =|+ +|.+|-
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--f---HwD---lPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--F---HWD---LPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--e---cCC---CCHHHH
Confidence 47899999999999999999999876664 245677777788888999999999977553 1 243 788886
Q ss_pred e-cCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEec
Q 005160 134 F-VQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQ 179 (711)
Q Consensus 134 ~-~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Q 179 (711)
+ ..+-.-+..=..|+++++--|+++..++| .+..=|.+.|+.++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 5 23321222224577777778888888888 44333666666554
No 125
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=55.34 E-value=25 Score=46.39 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=45.7
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCc---e----------eecccchHHHHHHHHHHcCCEEEEecCc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGN---Y----------NFEGRYDLVRFIKLVQKAGLYVHLRIGP 117 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~---y----------dF~g~~dl~~fl~la~~~GL~vilr~GP 117 (711)
+-+.|.+.|..+|++|+|+|-+-=++ +..+|. | .|.+..++.++++.|+++||.|||-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 66789999999999999999863222 212221 2 3456679999999999999999987543
No 126
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=55.03 E-value=30 Score=37.64 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=48.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC-----CCCceeecccc--hHHHHHHHHHHcCCEEEEecCcccc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEP-----SPGNYNFEGRY--DLVRFIKLVQKAGLYVHLRIGPYIC 120 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp-----~~G~ydF~g~~--dl~~fl~la~~~GL~vilr~GPyic 120 (711)
..+..++.++++++.||-+=.+.+-+.++.. .-|.|.|.-.+ |..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 5777899999999999875555443332321 23456665443 8999999999999999998877764
No 127
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=54.75 E-value=88 Score=30.54 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHCCCCEEEEccc--CCcCCC----CCCceeecccchHHHHHHHHHHcCCEEE-EecCcccccccCCCCC
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVF--WNVHEP----SPGNYNFEGRYDLVRFIKLVQKAGLYVH-LRIGPYICAEWNFGGF 128 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~--Wn~hEp----~~G~ydF~g~~dl~~fl~la~~~GL~vi-lr~GPyicaEw~~GG~ 128 (711)
...++..+.+++.|+..+....+ |..... .+.+ .-.....+.+.+++|++.|...+ +.+|.
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------- 94 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR----------- 94 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT-----------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc-----------
Confidence 45667778888999997765444 333211 1111 11123488899999999999865 44442
Q ss_pred CcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccCc
Q 005160 129 PVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPE 187 (711)
Q Consensus 129 P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~ 187 (711)
|-.. .......-++.+.+.+++++++.+++ | +.+.+||..+..
T Consensus 95 --~~~~-----~~~~~~~~~~~~~~~l~~l~~~a~~~-------g--v~i~lE~~~~~~ 137 (213)
T PF01261_consen 95 --YPSG-----PEDDTEENWERLAENLRELAEIAEEY-------G--VRIALENHPGPF 137 (213)
T ss_dssp --ESSS-----TTSSHHHHHHHHHHHHHHHHHHHHHH-------T--SEEEEE-SSSSS
T ss_pred --cccc-----cCCCHHHHHHHHHHHHHHHHhhhhhh-------c--ceEEEecccCcc
Confidence 1000 11123356677778888888888743 2 445688888763
No 128
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=54.19 E-value=37 Score=27.73 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=34.0
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEe
Q 005160 58 WEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLR 114 (711)
Q Consensus 58 W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr 114 (711)
.++.++++|+.|+++|.+ .-|.. +. ...++.+++++.|+.||..
T Consensus 17 ~~~~~~~a~~~g~~~v~i----TDh~~------~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 17 PEELVKRAKELGLKAIAI----TDHGN------LF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred HHHHHHHHHHcCCCEEEE----eeCCc------cc---CHHHHHHHHHHcCCeEEEE
Confidence 678899999999999998 55532 22 4568889999999988643
No 129
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=54.04 E-value=30 Score=38.11 Aligned_cols=73 Identities=12% Similarity=0.193 Sum_probs=54.4
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccc--hH--HHHHHHHHHcCCEEEEecCcccc
Q 005160 48 IHYPRS---SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRY--DL--VRFIKLVQKAGLYVHLRIGPYIC 120 (711)
Q Consensus 48 ~Hy~r~---~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~--dl--~~fl~la~~~GL~vilr~GPyic 120 (711)
+|..|. +.+..++.++++++.||.+=.+.+-+.++. ..+.|.|...+ |. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455553 678889999999999987655554433333 23667766543 77 99999999999999999888886
Q ss_pred c
Q 005160 121 A 121 (711)
Q Consensus 121 a 121 (711)
.
T Consensus 92 ~ 92 (339)
T cd06602 92 A 92 (339)
T ss_pred c
Confidence 4
No 130
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=53.83 E-value=1.7e+02 Score=31.51 Aligned_cols=119 Identities=15% Similarity=0.102 Sum_probs=79.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEee
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLK 133 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~ 133 (711)
.-+.-+-+|+.+|.-+. .|++|= +.-+-|+.++.+|.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 45778899999999887 999973 123467788999999999999884 443
Q ss_pred ecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccCcccccCchhHHHHHHHHHHHHHcCCCc
Q 005160 134 FVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEFGSAGEAYMKWAAEMAVELNTEV 213 (711)
Q Consensus 134 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 213 (711)
. |-. ..+++ .++..+. +. ..-..|-.+-|.||-=.-...-...-.+|+...|.+++++|.++
T Consensus 111 d---------d~~--~~~~~---til~ay~--~~--~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 D---------DIH--DAVEK---TILSAYL--PY--NGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred c---------chh--hhHHH---HHHHHHh--cc--CCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 111 22332 3444444 21 22247888999999522111111233579999999999999999
Q ss_pred ceeecCC
Q 005160 214 PWVMCKE 220 (711)
Q Consensus 214 p~~~~~~ 220 (711)
|..+.++
T Consensus 173 pV~T~ds 179 (305)
T COG5309 173 PVTTVDS 179 (305)
T ss_pred ceeeccc
Confidence 9887665
No 131
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=53.25 E-value=3.5e+02 Score=29.84 Aligned_cols=240 Identities=12% Similarity=0.113 Sum_probs=101.9
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEE-------cccCCcCCCCCCceeecccchH-HHHHHHHHHcCCEEEEecCcccccccC
Q 005160 53 SSHEMWEGLIQKAKDGGLDVIDT-------YVFWNVHEPSPGNYNFEGRYDL-VRFIKLVQKAGLYVHLRIGPYICAEWN 124 (711)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~NtV~~-------yv~Wn~hEp~~G~ydF~g~~dl-~~fl~la~~~GL~vilr~GPyicaEw~ 124 (711)
..++.| ++.+|++|+..|=. +-.|.-.-..-..-+-...+|+ .+|.+.|+++||++-+=-. .++|.
T Consensus 91 fD~dqW---~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S---~~dw~ 164 (346)
T PF01120_consen 91 FDADQW---AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYS---PWDWH 164 (346)
T ss_dssp --HHHH---HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEE---SSSCC
T ss_pred CCHHHH---HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEec---chHhc
Confidence 344455 56889999996542 1225432221111122223454 5889999999998776322 13555
Q ss_pred CCCCCcEeeecCCeeeccCChhHHHHHH-HHHHHHHHHhhhccccccCCCceEEeccccCccCcccccCchhHHHHHHHH
Q 005160 125 FGGFPVWLKFVQGISFRTDNKPFKHAMQ-NFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEFGSAGEAYMKWAA 203 (711)
Q Consensus 125 ~GG~P~WL~~~p~~~~R~~d~~y~~~~~-~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~ 203 (711)
....+.-...... ......+.+.+.++ .++.+|-+.+.+++. -+|=+=..... .....-...+.
T Consensus 165 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~------d~lWfDg~~~~--------~~~~~~~~~~~ 229 (346)
T PF01120_consen 165 HPDYPPDEEGDEN-GPADGPGNWQRYYNEYWLAQLRELLTRYKP------DILWFDGGWPD--------PDEDWDSAELY 229 (346)
T ss_dssp CTTTTSSCHCHHC-C--HCCHHHHHHHHHHHHHHHHHHHHCSTE------SEEEEESTTSC--------CCTHHHHHHHH
T ss_pred CcccCCCccCCcc-cccccchhhHhHhhhhhHHHHHHHHhCCCc------ceEEecCCCCc--------cccccCHHHHH
Confidence 4333222211000 00112233444444 344444444443211 12221111110 11222347778
Q ss_pred HHHHHcCCCcceeecCCCCCCcccccCCCCccc-ccCCCC-CCCCCceeeec-ccccccCcCCCCCcCCHHHHHHHHHHH
Q 005160 204 EMAVELNTEVPWVMCKEEDAPDPVINTCNGFYC-HSFSPN-KPSKPKMWTEA-WTGWFSDFGGQNYQRPVEDLAFAVARF 280 (711)
Q Consensus 204 ~~~~~~g~~vp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~p~~P~~~tE~-~~Gwf~~wG~~~~~~~~~~~~~~~~~~ 280 (711)
++++++..++.+....+....... ...+ +...+. ....|.-.... -.+||-. -.....++++++...+..+
T Consensus 230 ~~i~~~qp~~ii~~r~~~~~~~~~-----d~~~~E~~~~~~~~~~pwE~~~ti~~~W~y~-~~~~~~ks~~~li~~l~~~ 303 (346)
T PF01120_consen 230 NWIRKLQPDVIINNRWGGNEQGDG-----DYNTPERGIPGEIQGRPWETCTTIGPSWGYN-TPDEKYKSADELIDILVDS 303 (346)
T ss_dssp HHHHHHSTTSEEECCCSSCSSCCB-----SCCEECTTBTTTEEESEEEEEEESSSSSS-C-GGGCGS--HHHHHHHHHHH
T ss_pred HHHHHhCCeEEEecccCCCCCccc-----cccchhccCCCCCCCCCccccCcCCCCCccc-CCCCCcCCHHHHHHHHHHH
Confidence 888888777644322211110000 0001 111110 11112211111 2344431 1123446788888888888
Q ss_pred HHhCCeeeeeeEEeccCCCCCCCCCCcccCCCCCCCCCCcCCCCCchhhHHHHHHHHHHHhhhh
Q 005160 281 IQKGGSFVNYYMYHGGTNFGRTAGGPFITTSYDYDAPIDEYGLIREPKYGHLKKLHKAIKLCEN 344 (711)
Q Consensus 281 l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDy~Apl~E~G~~~~pky~~lr~l~~~~~~~~~ 344 (711)
..+|++++ +=- +.+.+|.+..+.-..||++...++....
T Consensus 304 vs~ngnlL---LNi----------------------gP~~dG~ip~~~~~~L~e~G~Wl~~nge 342 (346)
T PF01120_consen 304 VSRNGNLL---LNI----------------------GPDPDGTIPEEQVERLREIGDWLKVNGE 342 (346)
T ss_dssp HTBTEEEE---EEE-------------------------TTSS--HHHHHHHHHHHHHHHHHGG
T ss_pred hccCceEE---Eec----------------------CCCCCCCcCHHHHHHHHHHHHHHHhccc
Confidence 88887742 212 2335666656677788888888876443
No 132
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=51.95 E-value=33 Score=37.63 Aligned_cols=68 Identities=7% Similarity=0.051 Sum_probs=51.5
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccc--hHHHHHHHHHHcCCEEEEecCcccccc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRY--DLVRFIKLVQKAGLYVHLRIGPYICAE 122 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~--dl~~fl~la~~~GL~vilr~GPyicaE 122 (711)
+.++-++.++++++.||.+=.+.+-+.+. ...+.|.|+-.+ |..+|++..++.|++|++..=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 67778899999999998765555443221 244567776443 899999999999999999988888743
No 133
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=51.03 E-value=1.7e+02 Score=28.92 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhhccccccCCCceEEeccccCccCcccccCchhHHHHHHHHHHHHH
Q 005160 151 MQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEFGSAGEAYMKWAAEMAVE 208 (711)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 208 (711)
+.+-+.+++..++. .+.++|+| .||.|+-.-.+++..+.|.+.+-.+-++
T Consensus 101 ~~~~i~~l~~~l~~------~~~~~viV--snEvG~g~vp~~~~~r~f~d~lG~lnq~ 150 (169)
T cd00544 101 IADEIDALLAAVRN------KPGTLILV--SNEVGLGVVPENALGRRFRDELGRLNQR 150 (169)
T ss_pred HHHHHHHHHHHHHc------CCCcEEEE--ECCcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 34455566666662 35678887 5899863222445678898887776654
No 134
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=51.00 E-value=28 Score=44.23 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHcCCEEEEec
Q 005160 95 YDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 95 ~dl~~fl~la~~~GL~vilr~ 115 (711)
.++.++++.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999874
No 135
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=50.95 E-value=62 Score=34.76 Aligned_cols=109 Identities=13% Similarity=0.185 Sum_probs=69.1
Q ss_pred EEEEEEecCCCC---CHhHH-HHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecCc
Q 005160 42 ILFSGSIHYPRS---SHEMW-EGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGP 117 (711)
Q Consensus 42 ~~~sg~~Hy~r~---~~~~W-~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GP 117 (711)
+-+++..|+..- +.... -++|++-.++|.+.+-|-.+ ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 457888887553 22222 24555444699999998333 4444 7789999999997775555555
Q ss_pred ccc---------cccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhh
Q 005160 118 YIC---------AEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKD 164 (711)
Q Consensus 118 yic---------aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~ 164 (711)
..+ +||..--+|.|+.+.=. ....+++...+.--++..++++.+.+
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 433 67877778999975100 01223344556667778888877773
No 136
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=50.76 E-value=53 Score=35.26 Aligned_cols=115 Identities=19% Similarity=0.295 Sum_probs=68.1
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecc---cchHHHHHHHHHHcCCEEEEecCcccccccCCCCCC
Q 005160 53 SSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEG---RYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFP 129 (711)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g---~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P 129 (711)
..-+..++.++.+.++|+..|-+-.-|...+ ....+||+. ..||.++++-|++.|+.|+|+. -|..+|-.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~------~~~~~~~~ 101 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY------HSETGGNV 101 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE------ECCHTTBH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE------eCCcchhh
Confidence 4667889999999999999999988898732 234677763 3599999999999999998884 23332211
Q ss_pred --------cEeee-----cCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCce
Q 005160 130 --------VWLKF-----VQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPI 175 (711)
Q Consensus 130 --------~WL~~-----~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpI 175 (711)
.++.. +.++|+=--+. --+.+-+|+.+|++.-++|.|+..=+|++
T Consensus 102 ~~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~ 159 (273)
T PF10566_consen 102 ANLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGAT 159 (273)
T ss_dssp HHHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS-
T ss_pred HhHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCc
Confidence 11110 12222210000 11456678899999889888765555543
No 137
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=50.35 E-value=61 Score=37.77 Aligned_cols=271 Identities=18% Similarity=0.296 Sum_probs=130.6
Q ss_pred EEEEEecC------CCCCHhHHHHHHHHH---HHCCCCEEEEccc--------CCcCCCCCCc-----eeecc--cchHH
Q 005160 43 LFSGSIHY------PRSSHEMWEGLIQKA---KDGGLDVIDTYVF--------WNVHEPSPGN-----YNFEG--RYDLV 98 (711)
Q Consensus 43 ~~sg~~Hy------~r~~~~~W~~~l~k~---Ka~G~NtV~~yv~--------Wn~hEp~~G~-----ydF~g--~~dl~ 98 (711)
=++|++=- .+.+++.=++.|+.+ +-+|++.+|+.|- +.+.+ .|+. |.... ...+.
T Consensus 78 GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~~~~i 156 (496)
T PF02055_consen 78 GFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDKKYKI 156 (496)
T ss_dssp EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHHTTHH
T ss_pred EEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccchhhHH
Confidence 35666632 345655555555544 4489999999885 33332 2232 22221 12234
Q ss_pred HHHHHHHHc--CCEEEEecCcccccccCCCCCCcEeeecCCe----eec-cCChhHHHHHHHHHHHHHHHhhhccccccC
Q 005160 99 RFIKLVQKA--GLYVHLRIGPYICAEWNFGGFPVWLKFVQGI----SFR-TDNKPFKHAMQNFTQKIVLMMKDEKLFKSQ 171 (711)
Q Consensus 99 ~fl~la~~~--GL~vilr~GPyicaEw~~GG~P~WL~~~p~~----~~R-~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~ 171 (711)
-+|+.|++. +|+++.-| |. .|.|+.....+ .++ ..++.|.+....|+.+.++.+++ +
T Consensus 157 p~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~------~ 220 (496)
T PF02055_consen 157 PLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK------E 220 (496)
T ss_dssp HHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC------T
T ss_pred HHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH------C
Confidence 678877764 67888776 64 79999764322 244 23457888888888888887874 3
Q ss_pred CCceEEeccccCccCc-------c-cccC-chhHHHHHH-HHHHHHHcCC--CcceeecCC--CCCCc---cccc-----
Q 005160 172 GGPIILSQIENEYEPE-------R-EEFG-SAGEAYMKW-AAEMAVELNT--EVPWVMCKE--EDAPD---PVIN----- 229 (711)
Q Consensus 172 gGpII~~QiENEyg~~-------~-~~~~-~~~~~y~~~-l~~~~~~~g~--~vp~~~~~~--~~~~~---~~~~----- 229 (711)
|=||-++.+-||.... . +.+. ...++|++. |.-.+++.++ ++-++..+. ...|+ .++.
T Consensus 221 GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A~ 300 (496)
T PF02055_consen 221 GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDPEAA 300 (496)
T ss_dssp T--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHHHH
T ss_pred CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcChhhH
Confidence 5599999999998641 1 1111 234667764 8888988876 665555442 12221 1221
Q ss_pred -CCC--Cccc--c--------cCCCCCCCCCceeeeccccc-ccCcCCC-CCcCCHHHHHHHHHHHHHhCCeeeeeeEE-
Q 005160 230 -TCN--GFYC--H--------SFSPNKPSKPKMWTEAWTGW-FSDFGGQ-NYQRPVEDLAFAVARFIQKGGSFVNYYMY- 293 (711)
Q Consensus 230 -~~~--~~~~--~--------~~~~~~p~~P~~~tE~~~Gw-f~~wG~~-~~~~~~~~~~~~~~~~l~~g~s~~n~YM~- 293 (711)
... +++| . ......|++.++.||-..|. ....+.. .....++..+..+..-+.++++. +-++
T Consensus 301 ~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~g--w~~WN 378 (496)
T PF02055_consen 301 KYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSWNWDTSVDLGSWDRAERYAHDIIGDLNNWVSG--WIDWN 378 (496)
T ss_dssp TTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-STTS-SS-TTHHHHHHHHHHHHHHHHHTTEEE--EEEEE
T ss_pred hheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCCCcccccccccHHHHHHHHHHHHHHHHhhcee--eeeee
Confidence 011 1122 1 11134689999999986543 2111110 00112344445555556666542 2222
Q ss_pred -----eccCCCCCC-CCCCcccCCCCCCCCCCcCCC-CCchhhHHHHHHHHHHH
Q 005160 294 -----HGGTNFGRT-AGGPFITTSYDYDAPIDEYGL-IREPKYGHLKKLHKAIK 340 (711)
Q Consensus 294 -----hGGTNfG~~-~Ga~~~~TSYDy~Apl~E~G~-~~~pky~~lr~l~~~~~ 340 (711)
.||-||+.- ..++..+.. +.+. .++|.|+.|..+.+|++
T Consensus 379 l~LD~~GGP~~~~n~~d~~iivd~--------~~~~~~~~p~yY~~gHfSKFV~ 424 (496)
T PF02055_consen 379 LALDENGGPNWVGNFCDAPIIVDS--------DTGEFYKQPEYYAMGHFSKFVR 424 (496)
T ss_dssp SEBETTS---TT---B--SEEEEG--------GGTEEEE-HHHHHHHHHHTTS-
T ss_pred eecCCCCCCcccCCCCCceeEEEc--------CCCeEEEcHHHHHHHHHhcccC
Confidence 488887532 112221110 1121 23688999888877765
No 138
>PLN00196 alpha-amylase; Provisional
Probab=48.53 E-value=41 Score=38.40 Aligned_cols=57 Identities=19% Similarity=0.284 Sum_probs=40.0
Q ss_pred HHHHHHHHHCCCCEEEEc-ccCCc--CCCCCCc-ee-----ecccchHHHHHHHHHHcCCEEEEec
Q 005160 59 EGLIQKAKDGGLDVIDTY-VFWNV--HEPSPGN-YN-----FEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 59 ~~~l~k~Ka~G~NtV~~y-v~Wn~--hEp~~G~-yd-----F~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
.+.|..+|++|+++|-+. ++-+. |--.+.. |+ |....+|.++++.|+++||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 578888999999999875 33221 2222221 22 3334699999999999999999874
No 139
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=48.01 E-value=42 Score=36.54 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=52.0
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccc--hHHHHHHHHHHcCCEEEEecCcccc
Q 005160 48 IHYPRS---SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRY--DLVRFIKLVQKAGLYVHLRIGPYIC 120 (711)
Q Consensus 48 ~Hy~r~---~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~--dl~~fl~la~~~GL~vilr~GPyic 120 (711)
+|..|. ..++.++.++++++.++-.=.+.+-+.+.. .-+.|+|+..+ |..+|++..++.|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 344454 677889999999999987555444322222 23567776443 8999999999999999998877774
No 140
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=47.62 E-value=58 Score=35.44 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=47.6
Q ss_pred HhHHHHHHHHHHHCCCCEEEEcccCCcCCC---CCCceeecccc--hHHHHHHHHHHcCCEEEEecCcccc
Q 005160 55 HEMWEGLIQKAKDGGLDVIDTYVFWNVHEP---SPGNYNFEGRY--DLVRFIKLVQKAGLYVHLRIGPYIC 120 (711)
Q Consensus 55 ~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp---~~G~ydF~g~~--dl~~fl~la~~~GL~vilr~GPyic 120 (711)
.+.-++.++++++.+|-+=.+.+-+.+..- ....|+|...+ |..++++..+++|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 567789999999999876665544322221 12345554333 8999999999999999999877774
No 141
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=47.57 E-value=1.1e+02 Score=37.11 Aligned_cols=98 Identities=15% Similarity=0.111 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHCCCCEEE---------------EcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecCcccc
Q 005160 56 EMWEGLIQKAKDGGLDVID---------------TYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYIC 120 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~---------------~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyic 120 (711)
+.-...|+.+|++|+|||= .|++|.+..-+..-|| -| ...++.+.|+.|..+..||-.
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~-----~~--aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN-----RV--AWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC-----HH--HHHHHHhhCCEEEEeccceee
Confidence 4567889999999999996 4556733222222222 22 234588999999999999853
Q ss_pred c---------ccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhh
Q 005160 121 A---------EWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKD 164 (711)
Q Consensus 121 a---------Ew~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~ 164 (711)
+ +++..+-|.... |+--.| =.+|..++++|++.|.+-+++
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~ 455 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAG 455 (671)
T ss_pred ccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHH
Confidence 2 121111111111 000011 134668899999999988885
No 142
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=47.56 E-value=32 Score=36.37 Aligned_cols=48 Identities=25% Similarity=0.209 Sum_probs=34.9
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCCceeec-ccchHHHHHHHHHHcCCEEEEecC
Q 005160 62 IQKAKDGGLDVIDTYVFWNVHEPSPGNYNFE-GRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 62 l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~vilr~G 116 (711)
..++|++|++.|-+ +|.|.+. .|. -+..+.+=++.|.++||.+|++.|
T Consensus 79 ~~mLkd~G~~~vii----GHSERR~---~f~Etd~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 79 AEMLKDLGVKYVII----GHSERRQ---YFGETDELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHHCCCCEEEe----CcccccC---ccCcCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 35799999999999 7777664 233 223344444559999999999987
No 143
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=47.47 E-value=38 Score=34.76 Aligned_cols=44 Identities=20% Similarity=0.155 Sum_probs=37.1
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 62 IQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 62 l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
..++|++|++.|-+ +|.|.+ |.-+ |+.+=++.|.++||.+|++.
T Consensus 74 ~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 34789999999999 888876 4444 68889999999999999997
No 144
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=46.68 E-value=68 Score=38.33 Aligned_cols=111 Identities=11% Similarity=0.149 Sum_probs=76.1
Q ss_pred CCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 005160 37 NGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 37 dGkp~~~~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 116 (711)
++++-|.+++..++.+.+.+.=-++|++-.++|.+-+.|-.+++. + .+.+|++.|++.++.+|..+-
T Consensus 459 ~~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GIm 525 (612)
T PRK08645 459 GKKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIM 525 (612)
T ss_pred CCCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEee
Confidence 445668899999987766665556777777899999999555433 3 778899999877888887776
Q ss_pred c--------ccccccCCCCCCcEeeec-CCeeeccCChhHHHHHHHHHHHHHHHhh
Q 005160 117 P--------YICAEWNFGGFPVWLKFV-QGISFRTDNKPFKHAMQNFTQKIVLMMK 163 (711)
Q Consensus 117 P--------yicaEw~~GG~P~WL~~~-p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 163 (711)
| ++..+|..-=+|.|+.+. .. .. +....++.--++..++++.++
T Consensus 526 Pi~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 526 PLVSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred ecCCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 6 332335555578888751 11 11 223566777777777777776
No 145
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=46.25 E-value=71 Score=34.53 Aligned_cols=60 Identities=20% Similarity=0.286 Sum_probs=46.6
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEccc----CCcCC---C-------------CCCceeecccchHHHHHHHHHHcCCEEE
Q 005160 53 SSHEMWEGLIQKAKDGGLDVIDTYVF----WNVHE---P-------------SPGNYNFEGRYDLVRFIKLVQKAGLYVH 112 (711)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~NtV~~yv~----Wn~hE---p-------------~~G~ydF~g~~dl~~fl~la~~~GL~vi 112 (711)
.+.+..++.|+.|...++|+++.++- |.+-- | ..|.|-- .++.++++.|+++|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEE
Confidence 47889999999999999999999886 74321 1 1223333 399999999999999998
Q ss_pred Eec
Q 005160 113 LRI 115 (711)
Q Consensus 113 lr~ 115 (711)
-.+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 663
No 146
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=45.63 E-value=50 Score=36.21 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=51.0
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccc--hHHHHHHHHHHcCCEEEEecCcccc
Q 005160 48 IHYPRS---SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRY--DLVRFIKLVQKAGLYVHLRIGPYIC 120 (711)
Q Consensus 48 ~Hy~r~---~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~--dl~~fl~la~~~GL~vilr~GPyic 120 (711)
+|..|. +.+..++.++++++.||-.=.+.+-+.+.. .-+.|.|...+ |..++++..++.|+++++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCcee
Confidence 455453 677889999999999987544443333222 23456665433 8899999999999999988877775
No 147
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=45.34 E-value=3.1e+02 Score=31.33 Aligned_cols=89 Identities=15% Similarity=0.098 Sum_probs=57.3
Q ss_pred HHHHHHHHCCCCEEEEccc----CCcCCCCCCceeecccchHHHHHHHHHHcCCEE--EEecCcccccccCCCCCCcEee
Q 005160 60 GLIQKAKDGGLDVIDTYVF----WNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYV--HLRIGPYICAEWNFGGFPVWLK 133 (711)
Q Consensus 60 ~~l~k~Ka~G~NtV~~yv~----Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~v--ilr~GPyicaEw~~GG~P~WL~ 133 (711)
..++.+.+.|+|++++++- |..-+..+ .++.+|.++|+++||.+ ++-=+||.
T Consensus 145 ~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl-------------- 202 (413)
T PTZ00372 145 NSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL-------------- 202 (413)
T ss_pred HHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce--------------
Confidence 4678899999999999874 76554443 38899999999998852 44456663
Q ss_pred ecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEecc
Q 005160 134 FVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQI 180 (711)
Q Consensus 134 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~Qi 180 (711)
+.+=+.|+.-++...+.+.+-+++-. .+ |-+.+.+.-
T Consensus 203 ----INLASpd~e~rekSv~~~~~eL~rA~--~L----Ga~~VV~HP 239 (413)
T PTZ00372 203 ----INLANPDKEKREKSYDAFLDDLQRCE--QL----GIKLYNFHP 239 (413)
T ss_pred ----ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECC
Confidence 12334566666665555555555444 23 345555553
No 148
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=44.83 E-value=39 Score=38.25 Aligned_cols=70 Identities=13% Similarity=0.316 Sum_probs=46.7
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccc--hHHHHHHHHHHcCCEEEEecCccccccc
Q 005160 53 SSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRY--DLVRFIKLVQKAGLYVHLRIGPYICAEW 123 (711)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~--dl~~fl~la~~~GL~vilr~GPyicaEw 123 (711)
...+..++.++.+++.|+-.=.+.+-..+.. ..+.|.|+..+ |..++++.+++.|+++++..-|+|+-+-
T Consensus 40 ~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp TSHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CCHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 3577889999999999987666554422222 33455555432 8999999999999999999888775444
No 149
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.41 E-value=3.5e+02 Score=28.56 Aligned_cols=79 Identities=10% Similarity=0.128 Sum_probs=50.7
Q ss_pred HHHHHHHHHCCCCEEEEccc----CCcCCCCCCceeecccchHHHHHHHHHHcCCEE--EEecCcccccccCCCCCCcEe
Q 005160 59 EGLIQKAKDGGLDVIDTYVF----WNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYV--HLRIGPYICAEWNFGGFPVWL 132 (711)
Q Consensus 59 ~~~l~k~Ka~G~NtV~~yv~----Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~v--ilr~GPyicaEw~~GG~P~WL 132 (711)
.+.++.+++.|+++|++++- |..-+. ...+..+|.+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P~~w~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~Hapy~------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSPRWWRRPML--------EEEVIDWFKAALETNKNLSQIVLVHAPYL------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCccccCCCCC--------CHHHHHHHHHHHHHcCCCCcceeccCCee-------------
Confidence 46789999999999999653 321111 1236778888899998863 33334442
Q ss_pred eecCCeeeccCChhHHHHHHHHHHHHHHHhh
Q 005160 133 KFVQGISFRTDNKPFKHAMQNFTQKIVLMMK 163 (711)
Q Consensus 133 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 163 (711)
+.+=+.|+.-++...+.+.+.++.-+
T Consensus 73 -----iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -----INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -----eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334567777776666666666555
No 150
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=43.81 E-value=53 Score=35.61 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=40.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccC---CcCCCCCCce--------eecccchHHHHHHHHHHcCCEEEEec
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFW---NVHEPSPGNY--------NFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~W---n~hEp~~G~y--------dF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
.+..-.++++.+|..|+|++-+=+== ++.=|....+ .| .|+.-||+-|+|.||++|.|.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f---~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKF---KDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccc---cccHHHHHHHHhcCeEEEEEE
Confidence 45567789999999999998763310 1111111111 12 299999999999999999995
No 151
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=43.72 E-value=30 Score=39.26 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCCEEEE-ccc---CCcCC--------CCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 60 GLIQKAKDGGLDVIDT-YVF---WNVHE--------PSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 60 ~~l~k~Ka~G~NtV~~-yv~---Wn~hE--------p~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
+.|..+|.+|+++|-+ .++ -..|. -.| .|....|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~---~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDP---HFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7899999999999964 232 11221 112 56777899999999999999999763
No 152
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=41.84 E-value=2.3e+02 Score=29.30 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=33.5
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEE
Q 005160 51 PRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVH 112 (711)
Q Consensus 51 ~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi 112 (711)
++.+++ .++.|+++|++++.+- |=| .|||. ..-|.+.++.+++.|+..+
T Consensus 59 f~~~~~----~~~~l~~~G~d~~~la---NNH-----~fD~G-~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 59 FRAPPE----NAAALKAAGFDVVSLA---NNH-----SLDYG-EEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred ecCCHH----HHHHHHHhCCCEEEec---cCc-----ccccc-hHHHHHHHHHHHHCCCCEe
Confidence 456654 5778999999999881 123 24443 3457777888888888754
No 153
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=41.08 E-value=55 Score=34.43 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=38.3
Q ss_pred HHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 005160 63 QKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 63 ~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 116 (711)
.++|++|++.|-+ +|.|.+.- |. +.+.++.+=++.|.++||.+|++.|
T Consensus 78 ~mL~d~G~~~vii----GHSERR~~-f~-Et~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 78 EMLKDAGAKYVII----GHSERRQY-FG-ETDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHcCCCEEEe----CcccccCc-CC-CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4789999999999 77776641 11 2345888889999999999999987
No 154
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=40.70 E-value=43 Score=34.99 Aligned_cols=59 Identities=15% Similarity=0.113 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCC----CceeecccchHHHHHHHHHHcCCEEEEec-Ccc
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPSP----GNYNFEGRYDLVRFIKLVQKAGLYVHLRI-GPY 118 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~----G~ydF~g~~dl~~fl~la~~~GL~vilr~-GPy 118 (711)
+.+++.++.++++|..+|.+- ..+.... -.++.. ...|.++.+.|+++|+.+.+.+ +|+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~---~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLIS---AAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEc---CCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 356678889999999999662 2222111 111111 1368889999999999999997 344
No 155
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=40.37 E-value=71 Score=38.29 Aligned_cols=76 Identities=14% Similarity=0.254 Sum_probs=55.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEc-cc-----C--CcCCCCCCceeec---------ccchHHHHHHHHHHcCCEEEEecC
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTY-VF-----W--NVHEPSPGNYNFE---------GRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~y-v~-----W--n~hEp~~G~ydF~---------g~~dl~~fl~la~~~GL~vilr~G 116 (711)
.+..|+ .++++|+++|-+- ++ | ....-..|-||=+ -..|++++++.|+++||+||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 566675 5788999999862 32 3 3333345667633 235999999999999999996532
Q ss_pred --------cccccccCCCCCCcEee
Q 005160 117 --------PYICAEWNFGGFPVWLK 133 (711)
Q Consensus 117 --------PyicaEw~~GG~P~WL~ 133 (711)
||.-||.+.+-+|.|..
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y~ 176 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLYH 176 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCcee
Confidence 48889999888998884
No 156
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=40.31 E-value=76 Score=34.96 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=55.0
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccc--hHHHHHHHHHHcCCEEEEecCcccc
Q 005160 48 IHYPRS---SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRY--DLVRFIKLVQKAGLYVHLRIGPYIC 120 (711)
Q Consensus 48 ~Hy~r~---~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~--dl~~fl~la~~~GL~vilr~GPyic 120 (711)
+|..|. +.++.++.++++++.+|-.=.+++=|.++. .-+.|.|...+ |..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 778899999999999987655555555443 34667766543 8899999999999999998888887
No 157
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=40.17 E-value=32 Score=38.51 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=62.9
Q ss_pred ceeEEEcCCcEEECCEEeEEEEEEecCCC-CCHhHHHHHHHHHHHC-CCCEEEEcccCCcCCCCCCceeecccchHHHHH
Q 005160 24 LSSVTYDSKALIINGQRRILFSGSIHYPR-SSHEMWEGLIQKAKDG-GLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFI 101 (711)
Q Consensus 24 ~~~v~~d~~~f~~dGkp~~~~sg~~Hy~r-~~~~~W~~~l~k~Ka~-G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl 101 (711)
+..|-.-.-+|-+.-.+-...+=|+.|+- .|.+.||-+|..+.++ -=||+.+-|- |-|.|-=+.|+-. .|.+++
T Consensus 150 ~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivvi-NP~NPcGnVys~~---HL~kia 225 (447)
T KOG0259|consen 150 GANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI-NPNNPCGNVYSED---HLKKIA 225 (447)
T ss_pred CCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEe-CCCCCCcccccHH---HHHHHH
Confidence 34444444444444444444444555544 5889999999999986 8899998553 7777777888877 999999
Q ss_pred HHHHHcCCEEEEe
Q 005160 102 KLVQKAGLYVHLR 114 (711)
Q Consensus 102 ~la~~~GL~vilr 114 (711)
++|+++|+.||.-
T Consensus 226 e~A~klgi~vIaD 238 (447)
T KOG0259|consen 226 ETAKKLGIMVIAD 238 (447)
T ss_pred HHHHHhCCeEEeh
Confidence 9999999999854
No 158
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=39.57 E-value=2.2e+02 Score=31.49 Aligned_cols=115 Identities=20% Similarity=0.376 Sum_probs=65.5
Q ss_pred HHHHHHHHCCCCEEEEcccCCcCCCCC-------C--ceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCc
Q 005160 60 GLIQKAKDGGLDVIDTYVFWNVHEPSP-------G--NYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPV 130 (711)
Q Consensus 60 ~~l~k~Ka~G~NtV~~yv~Wn~hEp~~-------G--~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~ 130 (711)
+.++.+.++|++-|.. +.|.-.| | -||-+ .+-+..+.+.+.|+.|++-| .
T Consensus 205 ~lv~eLeeAGLdRiNl----Sv~aLDpk~Ak~L~G~~dYdv~---kvle~aE~i~~a~idvlIaP--------------v 263 (414)
T COG2100 205 KLVDELEEAGLDRINL----SVDALDPKLAKMLAGRKDYDVK---KVLEVAEYIANAGIDVLIAP--------------V 263 (414)
T ss_pred HHHHHHHHhCCceEEe----ecccCCHHHHHHhcCccccCHH---HHHHHHHHHHhCCCCEEEee--------------e
Confidence 4455667777777666 4444332 3 23322 23333444567899999986 7
Q ss_pred EeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCc--cCccc-ccCchhHHHHHHHHHHHH
Q 005160 131 WLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEY--EPERE-EFGSAGEAYMKWAAEMAV 207 (711)
Q Consensus 131 WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEy--g~~~~-~~~~~~~~y~~~l~~~~~ 207 (711)
|| |++ ||. =+..+-.|.+++. ++.+-|.+++|--=.| |--.- .-.-.=++|.+||+++-+
T Consensus 264 ~l---PG~----ND~-E~~~iIe~A~~iG---------aGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrelEk 326 (414)
T COG2100 264 WL---PGV----NDD-EMPKIIEWAREIG---------AGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRELEK 326 (414)
T ss_pred ec---CCc----ChH-HHHHHHHHHHHhC---------CCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHHHH
Confidence 88 554 332 2344555655543 3455577888844333 32110 000123689999999999
Q ss_pred HcCCC
Q 005160 208 ELNTE 212 (711)
Q Consensus 208 ~~g~~ 212 (711)
+.|..
T Consensus 327 etg~k 331 (414)
T COG2100 327 ETGVK 331 (414)
T ss_pred HhCCC
Confidence 98875
No 159
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=38.82 E-value=56 Score=35.53 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=42.3
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEccc----CCcCC------CCCCcee------ecccchHHHHHHHHHHcCCEEEEe
Q 005160 53 SSHEMWEGLIQKAKDGGLDVIDTYVF----WNVHE------PSPGNYN------FEGRYDLVRFIKLVQKAGLYVHLR 114 (711)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~NtV~~yv~----Wn~hE------p~~G~yd------F~g~~dl~~fl~la~~~GL~vilr 114 (711)
.+.+.-++.|+.|...++|++..++- |.+-- .+.|.+. +=-..|+.++++.|++.|+.||-.
T Consensus 15 ~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeee
Confidence 37888999999999999999999874 43221 1223221 111249999999999999999965
No 160
>PLN02877 alpha-amylase/limit dextrinase
Probab=37.95 E-value=64 Score=40.52 Aligned_cols=21 Identities=19% Similarity=0.494 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHcCCEEEEec
Q 005160 95 YDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 95 ~dl~~fl~la~~~GL~vilr~ 115 (711)
+++.++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 369999999999999999874
No 161
>PRK09875 putative hydrolase; Provisional
Probab=37.18 E-value=1.9e+02 Score=31.26 Aligned_cols=88 Identities=13% Similarity=0.044 Sum_probs=57.1
Q ss_pred eEEEcCCcEEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHH
Q 005160 26 SVTYDSKALIINGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQ 105 (711)
Q Consensus 26 ~v~~d~~~f~~dGkp~~~~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~ 105 (711)
.+++-+..++++..++.- ......-..+.=...|+.+|++|.+||=- ..+ ..-.||+..+.++++
T Consensus 7 G~tl~HEHl~~~~~~~~~---~~~~~l~~~~~~~~el~~~~~~Gg~tiVd--------~T~----~g~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFKN---NVDCRLDQYAFICQEMNDLMTRGVRNVIE--------MTN----RYMGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhhcC---CcccccccHHHHHHHHHHHHHhCCCeEEe--------cCC----CccCcCHHHHHHHHH
Confidence 456666677766533221 11111113455667888999999998832 111 112369999999999
Q ss_pred HcCCEEEEecCcccccccCCCCCCcEee
Q 005160 106 KAGLYVHLRIGPYICAEWNFGGFPVWLK 133 (711)
Q Consensus 106 ~~GL~vilr~GPyicaEw~~GG~P~WL~ 133 (711)
+-|+.+|...|-|.-.. +|.|+.
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~ 94 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVA 94 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHh
Confidence 99999999999885322 577775
No 162
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=36.71 E-value=68 Score=35.48 Aligned_cols=109 Identities=19% Similarity=0.291 Sum_probs=62.9
Q ss_pred EEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeeecCCeeeccCChhHHHHH
Q 005160 72 VIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAM 151 (711)
Q Consensus 72 tV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~ 151 (711)
.|.+.|.|+++--+. -=...++.|+++|++|+--. .-||+ +-+.|+.. + +. +++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~---l-L~-~~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGTF----IFEWT--GQVEWLED---F-LK-KDE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEEE----EecCC--CchHHHHH---H-hc-cCc---ccc
Confidence 477778888764221 00267999999999997432 33665 33355532 0 11 111 223
Q ss_pred HHHHHHHHHHhhhccccccCCCceEEeccccCccCcccccCchhHHHHHHHHHHHHHcCC
Q 005160 152 QNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEFGSAGEAYMKWAAEMAVELNT 211 (711)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~ 211 (711)
.++.++|++..+.+.+ + | +.+-+||..+... ....=+++++.|++.+++.+.
T Consensus 89 ~~~a~kLv~lak~yGf---D-G--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~~~ 140 (339)
T cd06547 89 FPVADKLVEVAKYYGF---D-G--WLINIETELGDAE--KAKRLIAFLRYLKAKLHENVP 140 (339)
T ss_pred hHHHHHHHHHHHHhCC---C-c--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhcCC
Confidence 5778888888885444 2 3 7778888873110 011234577777777776543
No 163
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=36.55 E-value=1.5e+02 Score=30.58 Aligned_cols=91 Identities=12% Similarity=0.128 Sum_probs=64.3
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec-ccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcE
Q 005160 53 SSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFE-GRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVW 131 (711)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~W 131 (711)
..+..++..++.++++|+..+-+|..... ....+..+ |..|-..-+++|+++|+. +| -|-+
T Consensus 49 ~~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~g-----------s~IY 110 (212)
T cd06418 49 LSKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP----PG-----------TIIY 110 (212)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC----CC-----------CEEE
Confidence 35778899999999999999999988755 22233333 677999999999999982 22 3334
Q ss_pred eeecCCeeeccCChhHHHHHHHHHHHHHHHhhhc
Q 005160 132 LKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDE 165 (711)
Q Consensus 132 L~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~ 165 (711)
+.-+.+. .+..+...+..|++.+.+.|...
T Consensus 111 favD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 111 FAVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EEeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 4322221 23346778889999998888753
No 164
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=36.39 E-value=1.1e+02 Score=33.09 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=58.1
Q ss_pred HHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCE--EEEecCc--------ccccccCCCCCCc
Q 005160 61 LIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLY--VHLRIGP--------YICAEWNFGGFPV 130 (711)
Q Consensus 61 ~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~--vilr~GP--------yicaEw~~GG~P~ 130 (711)
+|++-.++|.+.+.|-. .||.+ .+.+|++.|++.|+. |+..+-| ++ ++...-.+|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ~----------~Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQF----------FFDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeeccc----------ccchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 56666678998888833 34544 888999999999955 5555445 34 6777788999
Q ss_pred EeeecCCeeeccCC-hhHHHHHHHHHHHHHHHhhh
Q 005160 131 WLKFVQGISFRTDN-KPFKHAMQNFTQKIVLMMKD 164 (711)
Q Consensus 131 WL~~~p~~~~R~~d-~~y~~~~~~~~~~l~~~~~~ 164 (711)
|+.+.=. +. .+| ...+++--++..++++.+.+
T Consensus 234 ~l~~~l~-~~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 234 WMAKMFD-GL-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9975211 01 133 33556666777787777764
No 165
>PRK14565 triosephosphate isomerase; Provisional
Probab=36.34 E-value=62 Score=34.01 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=35.2
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCCceeec-ccchHHHHHHHHHHcCCEEEEecC
Q 005160 62 IQKAKDGGLDVIDTYVFWNVHEPSPGNYNFE-GRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 62 l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~vilr~G 116 (711)
.+++|++|++.+-+ +|.|.+. .|. .+..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~~vii----GHSERR~---~f~Etd~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVIL----GHSERRS---TFHETDSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEE----CcccccC---cCCcCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 35789999999998 8877764 243 122333334889999999999997
No 166
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=36.33 E-value=1.4e+02 Score=31.12 Aligned_cols=96 Identities=9% Similarity=0.025 Sum_probs=54.1
Q ss_pred CCCceeec-ccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhh
Q 005160 85 SPGNYNFE-GRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMK 163 (711)
Q Consensus 85 ~~G~ydF~-g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 163 (711)
..|...+. ...++..+++.|++.|++|++..| .|..+.+- .+ ..++. .-++|++.+++.++
T Consensus 35 ~~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sig-----g~~~~~~~-~~---------~~~~~---~r~~fi~~lv~~~~ 96 (253)
T cd06545 35 ANGTLNANPVRSELNSVVNAAHAHNVKILISLA-----GGSPPEFT-AA---------LNDPA---KRKALVDKIINYVV 96 (253)
T ss_pred CCCeEEecCcHHHHHHHHHHHHhCCCEEEEEEc-----CCCCCcch-hh---------hcCHH---HHHHHHHHHHHHHH
Confidence 35666664 335788999999999999999986 12211110 01 12332 34578888888888
Q ss_pred hccccccCCCceEEeccccCccCcccccCchhHHHHHHHHHHHHHc
Q 005160 164 DEKLFKSQGGPIILSQIENEYEPEREEFGSAGEAYMKWAAEMAVEL 209 (711)
Q Consensus 164 ~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~ 209 (711)
++.+ =++.|+=|+.... ...=..+++.|++.+++.
T Consensus 97 ~~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 97 SYNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKE 131 (253)
T ss_pred HhCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhc
Confidence 6554 1345555664310 011123455555555443
No 167
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=36.32 E-value=57 Score=40.71 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHcCCEEEEec
Q 005160 95 YDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 95 ~dl~~fl~la~~~GL~vilr~ 115 (711)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 378899999999999999864
No 168
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=35.48 E-value=2.3e+02 Score=29.71 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=56.5
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCC-CCcee---e-cccchHHHHHHHHHHcCCEEEEecCcccccccCCC
Q 005160 52 RSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPS-PGNYN---F-EGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFG 126 (711)
Q Consensus 52 r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~-~G~yd---F-~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~G 126 (711)
.+.++.-+...+.+++.|+....+-. ..|.+. ++.-| . .....+.+.|++|++.|..+|.-+|
T Consensus 53 ~~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~---------- 120 (283)
T PRK13209 53 DWSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAG---------- 120 (283)
T ss_pred CCCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC----------
Confidence 34677777777788899998776421 112111 11100 0 0112577889999999999775322
Q ss_pred CCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCc
Q 005160 127 GFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEY 184 (711)
Q Consensus 127 G~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEy 184 (711)
.+.|. ...++...+.+...++++++..+++ | |.+.+||-.
T Consensus 121 -~~~~~--------~~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~ 160 (283)
T PRK13209 121 -YDVYY--------EQANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMD 160 (283)
T ss_pred -ccccc--------cccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecC
Confidence 11121 1122344455556667777766632 3 345678854
No 169
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=34.70 E-value=66 Score=33.48 Aligned_cols=60 Identities=13% Similarity=-0.011 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
+..++.++.++++|..+|.+...+......+.+..-.-...|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 457888999999999999774333211111111100112366778889999999999997
No 170
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=34.23 E-value=97 Score=31.02 Aligned_cols=87 Identities=18% Similarity=0.316 Sum_probs=53.9
Q ss_pred EEecCCCC-----CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCcee--ecc-cchHHHHHHHHHHcCCEEEEecCc
Q 005160 46 GSIHYPRS-----SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYN--FEG-RYDLVRFIKLVQKAGLYVHLRIGP 117 (711)
Q Consensus 46 g~~Hy~r~-----~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~yd--F~g-~~dl~~fl~la~~~GL~vilr~GP 117 (711)
|.+||++. +.++.+.-++.++..++..- ..|--.|..++.+. .+- ...+.+|++..+++|..+++-..+
T Consensus 56 G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~~---~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~~ 132 (196)
T cd06416 56 DVYFFPCINCCGSAAGQVQTFLQYLKANGIKYG---TVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSSQ 132 (196)
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHhCCCcee---EEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 88999764 45678888888888654321 11223333233322 111 136789999999999999999887
Q ss_pred ccc----ccc---CCCCCCcEeeec
Q 005160 118 YIC----AEW---NFGGFPVWLKFV 135 (711)
Q Consensus 118 yic----aEw---~~GG~P~WL~~~ 135 (711)
+-. +.. +...+|.|+...
T Consensus 133 ~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 133 YDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred chhccccCCCcCCCcCCCceEecCC
Confidence 521 111 145789999763
No 171
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=34.21 E-value=80 Score=33.47 Aligned_cols=71 Identities=20% Similarity=0.091 Sum_probs=45.8
Q ss_pred CEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec-ccchHHHHHHHHHHcCCEEEEecC
Q 005160 38 GQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFE-GRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 38 Gkp~~~~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~vilr~G 116 (711)
| ++.+.+=.+|+...-.=.=+--..++|++|++.|-+ +|.|.+. .|. -+..+.+=++.|.++||.+||+.|
T Consensus 58 g-~i~~gAQn~~~~~~GA~TGeiS~~mL~d~G~~~vii----GHSERR~---~~~E~d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 58 G-NIKVGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLI----GHSERRL---YFGETDELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred C-CceEEeccCCcccCCCccCcCCHHHHHHcCCCEEEE----Ccccccc---ccccchHHHHHHHHHHHHCCCeEEEEcC
Confidence 6 566555556653210000011234789999999999 8877654 343 223566778899999999999987
No 172
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=34.13 E-value=42 Score=36.54 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCE--EE-Eec
Q 005160 57 MWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLY--VH-LRI 115 (711)
Q Consensus 57 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~--vi-lr~ 115 (711)
.|++.+.+++..|+ +|++.-+--..|..|+.|. |+...+++|...|+- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 6777777888999999885 899999999999986 44 676
No 173
>PRK09267 flavodoxin FldA; Validated
Probab=33.88 E-value=3e+02 Score=26.59 Aligned_cols=74 Identities=7% Similarity=0.087 Sum_probs=48.1
Q ss_pred ECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEE
Q 005160 36 INGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVH 112 (711)
Q Consensus 36 ~dGkp~~~~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi 112 (711)
++.-..++++...|....++..|.+-+++++...++...+.+| .......-.-.|. .-+..+-+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaif-g~g~~~~~~~~~~--~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALF-GLGDQEDYAEYFC--DAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEE-ecCCCCcchHHHH--HHHHHHHHHHHHCCCEEE
Confidence 4556678999999987777888999998887777776666666 2221111001121 235566777888897654
No 174
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=33.50 E-value=67 Score=32.54 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=38.6
Q ss_pred CCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccc-hHHHHHHHHHH--cCCEEEEecCccccc
Q 005160 50 YPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRY-DLVRFIKLVQK--AGLYVHLRIGPYICA 121 (711)
Q Consensus 50 y~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~-dl~~fl~la~~--~GL~vilr~GPyica 121 (711)
..|+.++|--..-+.+|+.||.++-.---=..|.... |-+-..+ .++ +-..+ ..-++|+||||..|-
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSr--FlY~k~KGEvE---~~v~eL~F~~~~i~RPG~ll~~ 172 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSR--FLYMKMKGEVE---RDVIELDFKHIIILRPGPLLGE 172 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccc--eeeeeccchhh---hhhhhccccEEEEecCcceecc
Confidence 3578999999999999999998875432222332221 2111000 111 11122 234689999998874
No 175
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=33.34 E-value=1.1e+02 Score=33.76 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=50.3
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcc----------cCCcCCC--C-------CCceeecc-c--chHHHHHH
Q 005160 48 IHYPRS---SHEMWEGLIQKAKDGGLDVIDTYV----------FWNVHEP--S-------PGNYNFEG-R--YDLVRFIK 102 (711)
Q Consensus 48 ~Hy~r~---~~~~W~~~l~k~Ka~G~NtV~~yv----------~Wn~hEp--~-------~G~ydF~g-~--~dl~~fl~ 102 (711)
+|..|. ..+.-++.++++++.||.+=.+++ .|+-..- . =+.++|.. . -|..+|++
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 555553 677789999999999997655544 2442211 1 12333432 1 28999999
Q ss_pred HHHHcCCEEEEecCcccc
Q 005160 103 LVQKAGLYVHLRIGPYIC 120 (711)
Q Consensus 103 la~~~GL~vilr~GPyic 120 (711)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998878874
No 176
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=33.29 E-value=73 Score=33.37 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec-ccchHHHHHHHHHHcCCEEEEec
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFE-GRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~vilr~ 115 (711)
+.+++.++.++++|.+.|.+.-.-...++.. .=.++ -...+.+++++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKS-EETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccccccccc-HHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 4578889999999999998631100001111 00111 01367888899999999999987
No 177
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=33.13 E-value=37 Score=34.81 Aligned_cols=16 Identities=31% Similarity=0.827 Sum_probs=14.2
Q ss_pred ceEEEEECCeeeeeee
Q 005160 625 NKGQVLINGQNIGRYW 640 (711)
Q Consensus 625 gKG~v~VNG~nlGRYW 640 (711)
.+|.|||||++|.|.=
T Consensus 55 t~G~i~~~~~dl~~l~ 70 (223)
T COG2884 55 TRGKILVNGHDLSRLK 70 (223)
T ss_pred CCceEEECCeeccccc
Confidence 6799999999999964
No 178
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=33.09 E-value=82 Score=34.70 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=28.3
Q ss_pred cCCcEEECCEEeEEEEEEecCCCC-CHhHHHHHH-HHHHHCCCCEEEE
Q 005160 30 DSKALIINGQRRILFSGSIHYPRS-SHEMWEGLI-QKAKDGGLDVIDT 75 (711)
Q Consensus 30 d~~~f~~dGkp~~~~sg~~Hy~r~-~~~~W~~~l-~k~Ka~G~NtV~~ 75 (711)
|.+++.|||||++++=.. ..+ ....+-+.+ +.+|++|+.-|-+
T Consensus 150 D~rYikVdGKPv~~Iy~p---~~~pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLIYRP---GDIPDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEEECc---ccccCHHHHHHHHHHHHHHcCCCceEE
Confidence 779999999999987333 222 222333333 4668899996654
No 179
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=32.37 E-value=1.2e+02 Score=32.77 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=43.3
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCC--CCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEP--SPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp--~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++...++ ...+.+++++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 4788999999999999999999875421111 12211122 2378899999999999887764
No 180
>PLN02429 triosephosphate isomerase
Probab=32.14 E-value=76 Score=34.78 Aligned_cols=44 Identities=25% Similarity=0.197 Sum_probs=31.6
Q ss_pred HHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHH----HHHHcCCEEEEecC
Q 005160 63 QKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIK----LVQKAGLYVHLRIG 116 (711)
Q Consensus 63 ~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~----la~~~GL~vilr~G 116 (711)
.++|++|++.|-+ +|-|.+. .|. .-++++. .|.++||.+|++.|
T Consensus 141 ~mLkd~Gv~~Vii----GHSERR~---~f~---Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 141 EQLKDLGCKWVIL----GHSERRH---VIG---EKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred HHHHHcCCCEEEe----CccccCC---CCC---cCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 4678888888877 7777654 243 3344454 49999999999997
No 181
>PRK14566 triosephosphate isomerase; Provisional
Probab=32.13 E-value=92 Score=33.20 Aligned_cols=74 Identities=18% Similarity=0.060 Sum_probs=47.5
Q ss_pred ECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec-ccchHHHHHHHHHHcCCEEEEe
Q 005160 36 INGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFE-GRYDLVRFIKLVQKAGLYVHLR 114 (711)
Q Consensus 36 ~dGkp~~~~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~vilr 114 (711)
++|.++.+.+=.+|+.-.-+-.=+---.++|++|++.|-+ +|.|.+. .|. -+..+.+=++.|.++||.+|++
T Consensus 62 ~~g~~i~v~AQnv~~~~~Ga~TGevS~~mL~d~G~~~vii----GHSERR~---~f~Etd~~v~~Kv~~al~~gl~pIvC 134 (260)
T PRK14566 62 LDGSLVRMGAQNVSQHDFGAYTGEVSGQMLKDAGCRYVII----GHSERRR---MYGETSNIVAEKFAAAQKHGLTPILC 134 (260)
T ss_pred ccCceEEEEecccccccCCCccCccCHHHHHHcCCCEEEE----CcccccC---CCCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 4555566555555542210000011234799999999999 8877664 343 2345667788999999999999
Q ss_pred cC
Q 005160 115 IG 116 (711)
Q Consensus 115 ~G 116 (711)
.|
T Consensus 135 vG 136 (260)
T PRK14566 135 VG 136 (260)
T ss_pred cC
Confidence 87
No 182
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.85 E-value=1.9e+02 Score=32.09 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=45.4
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEccc----CCcCC---C-------------------------CCCceeecccchHHHH
Q 005160 53 SSHEMWEGLIQKAKDGGLDVIDTYVF----WNVHE---P-------------------------SPGNYNFEGRYDLVRF 100 (711)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~NtV~~yv~----Wn~hE---p-------------------------~~G~ydF~g~~dl~~f 100 (711)
.+.+..++.|+.|...++|++..++- |.+-- | ..|.|- ..|+.++
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHH
Confidence 47899999999999999999998873 42211 1 122332 2499999
Q ss_pred HHHHHHcCCEEEEec
Q 005160 101 IKLVQKAGLYVHLRI 115 (711)
Q Consensus 101 l~la~~~GL~vilr~ 115 (711)
++.|+++|+.||-.+
T Consensus 92 v~yA~~rgI~VIPEI 106 (357)
T cd06563 92 VAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHcCCEEEEec
Confidence 999999999999764
No 183
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=31.70 E-value=73 Score=33.81 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=33.9
Q ss_pred HHHHHHHHHCCCCEEEEcccCC--cCCCCCCceeecccchHHHHHHHHHHcCCEEEE
Q 005160 59 EGLIQKAKDGGLDVIDTYVFWN--VHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHL 113 (711)
Q Consensus 59 ~~~l~k~Ka~G~NtV~~yv~Wn--~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vil 113 (711)
++.++++|++|++.|...+--+ .++..-+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 5678899999999988865410 111111223444 566778899999998653
No 184
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=31.61 E-value=4.4e+02 Score=26.98 Aligned_cols=122 Identities=15% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCCC-ceeec-ccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeeecC
Q 005160 59 EGLIQKAKDGGLDVIDTYVFWNVHEPSPG-NYNFE-GRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQ 136 (711)
Q Consensus 59 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G-~ydF~-g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~~p 136 (711)
++.++.|+++|++++.+ | .-.|+ |..-|.+.++..++.|+..+--- +......|.-+...+
T Consensus 67 ~~~~~~L~~~G~d~~tl-----------aNNH~fD~G~~gl~~t~~~l~~~~i~~~g~~------~~~~~~~~~~i~~~~ 129 (239)
T cd07381 67 PEVADALKAAGFDVVSL-----------ANNHTLDYGEEGLLDTLDALDEAGIAHAGAG------RNLEEARRPAILEVN 129 (239)
T ss_pred HHHHHHHHHhCCCEEEc-----------ccccccccchHHHHHHHHHHHHcCCceeECC------CCHHHhcCcEEEEEC
Q ss_pred Ceee------------------cc--CChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccCcccccCchhH
Q 005160 137 GISF------------------RT--DNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEFGSAGE 196 (711)
Q Consensus 137 ~~~~------------------R~--~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~ 196 (711)
++++ .. ......+.++++++++-+. . .+ -|++.+...||.. ...
T Consensus 130 g~kVg~ig~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr~~-~--D~------vIv~~H~G~e~~~-------~p~ 193 (239)
T cd07381 130 GIKVAFLAYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAKKK-A--DI------VIVSLHWGVEYSY-------YPT 193 (239)
T ss_pred CEEEEEEEEECCCCCCcCcccCCccccCccCHHHHHHHHHHHhhc-C--CE------EEEEecCcccCCC-------CCC
Q ss_pred HHHHHHHHHHHHcCCCc
Q 005160 197 AYMKWAAEMAVELNTEV 213 (711)
Q Consensus 197 ~y~~~l~~~~~~~g~~v 213 (711)
.+.+.+++.+.+.|+++
T Consensus 194 ~~~~~la~~l~~~G~D~ 210 (239)
T cd07381 194 PEQRELARALIDAGADL 210 (239)
T ss_pred HHHHHHHHHHHHCCCCE
No 185
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=31.54 E-value=72 Score=32.99 Aligned_cols=58 Identities=12% Similarity=-0.055 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCcee-ec-ccchHHHHHHHHHHcCCEEEEec
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYN-FE-GRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~yd-F~-g~~dl~~fl~la~~~GL~vilr~ 115 (711)
+.+++.++.++++|..+|.+...+ +...+..-+ ++ -...+.++.+.|++.|+.+.+.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~--~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGK--RPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCC--CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 678889999999999999863322 111100000 00 11357788899999999999987
No 186
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=31.51 E-value=1.7e+02 Score=31.08 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=66.4
Q ss_pred eEEEEEEecCCCC----CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 005160 41 RILFSGSIHYPRS----SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 41 ~~~~sg~~Hy~r~----~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 116 (711)
.+-+++..|+.+- +.+.=.++|++=.++|.+.+-|-. .||.+ .+.+|++.|++.|+.+=+.+|
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~----------~fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQL----------FFDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeecc----------ccCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 4678888877642 333333567776778999998833 34444 788999999999766544444
Q ss_pred --ccc-------ccccCCCCCCcEeeecCCeeec--cCC-hhHHHHHHHHHHHHHHHhh
Q 005160 117 --PYI-------CAEWNFGGFPVWLKFVQGISFR--TDN-KPFKHAMQNFTQKIVLMMK 163 (711)
Q Consensus 117 --Pyi-------caEw~~GG~P~WL~~~p~~~~R--~~d-~~y~~~~~~~~~~l~~~~~ 163 (711)
|-. .++|..-.+|.|+.+. +. .++ ...+++--++..++++.+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~----l~~~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKR----LEKYDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHH----HHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 321 2335566778888751 11 122 3455566667777777666
No 187
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=31.35 E-value=57 Score=35.62 Aligned_cols=60 Identities=22% Similarity=0.458 Sum_probs=38.1
Q ss_pred EEEEEEec------CCCCCHhHHHHHHHHHHHC-CCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEE
Q 005160 42 ILFSGSIH------YPRSSHEMWEGLIQKAKDG-GLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVH 112 (711)
Q Consensus 42 ~~~sg~~H------y~r~~~~~W~~~l~k~Ka~-G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi 112 (711)
++.||. | +.+++.+-|++..|+--.. |+|..+-| |..-++.. ....++|++|+++|-+.|
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~--------~~~A~lLkl~akYGGy~i 170 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS--------EHFADLLKLCAKYGGYFI 170 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH--------HHHHHHHHHHHHTT-EEE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh--------HHHHHHHHHHHHhCceEE
Confidence 455666 7 3556777788888887775 99988885 54444332 378899999999999883
No 188
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=31.33 E-value=2.2e+02 Score=31.51 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=46.3
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEccc----CCcCCC------CCCceeecc---cchHHHHHHHHHHcCCEEEEec
Q 005160 53 SSHEMWEGLIQKAKDGGLDVIDTYVF----WNVHEP------SPGNYNFEG---RYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~NtV~~yv~----Wn~hEp------~~G~ydF~g---~~dl~~fl~la~~~GL~vilr~ 115 (711)
++.+..++.|+.|....+|++..++- |.+--+ +.|.|.=.| ..|+.++++.|++.|+.||..+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 46899999999999999999998763 543221 123322111 2499999999999999999763
No 189
>PTZ00333 triosephosphate isomerase; Provisional
Probab=31.30 E-value=98 Score=32.86 Aligned_cols=47 Identities=28% Similarity=0.237 Sum_probs=38.4
Q ss_pred HHHHHCCCCEEEEcccCCcCCCCCCceee-cccchHHHHHHHHHHcCCEEEEecC
Q 005160 63 QKAKDGGLDVIDTYVFWNVHEPSPGNYNF-EGRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 63 ~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF-~g~~dl~~fl~la~~~GL~vilr~G 116 (711)
.++|++|++.|-+ +|.|.+. .| +.+..+.+=++.|.++||.+|++.|
T Consensus 83 ~mL~d~G~~~vii----GHSERR~---~f~Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 83 EMLKDLGINWTIL----GHSERRQ---YFGETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHcCCCEEEE----CcccccC---cCCCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 5789999999999 7777664 33 2345788889999999999999987
No 190
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=31.22 E-value=22 Score=30.74 Aligned_cols=37 Identities=32% Similarity=0.665 Sum_probs=27.2
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKA 107 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~ 107 (711)
....|-.-+|.+-. .||.|..|||. +|.+||++|-|-
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 45678888877765 37999999999 999999999764
No 191
>PLN02784 alpha-amylase
Probab=31.07 E-value=73 Score=39.42 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=38.8
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCC---CCCc-ee----ecccchHHHHHHHHHHcCCEEEEec
Q 005160 59 EGLIQKAKDGGLDVIDTYVFWNVHEP---SPGN-YN----FEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 59 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp---~~G~-yd----F~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
.++|..++++|+++|-+.=+-....+ .+.. |+ |....+|.++++.|+++||.||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46788899999999987533211111 1111 11 2334699999999999999999874
No 192
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=31.03 E-value=2.3e+02 Score=26.18 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=40.8
Q ss_pred EEEEEEEecCCCCCcccCCCCCCeeeeCCcceEEEEEECCEEEEEEeCccc-----ceeeEEEeeeeccCC-ccEEEEEE
Q 005160 449 YLWCSTSVNISSSDSFLHGGERPTLSVQSRGHALHVFVNGQLTGSASGTRT-----YKRFTFRGNVNLHAG-VNTISLLS 522 (711)
Q Consensus 449 y~~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~~~vfvng~~vG~~~~~~~-----~~~~~~~~~~~l~~g-~~~L~ILv 522 (711)
.+.++..|..+.++. -++.+. ..|.+.+||||+.+-...+... .........+.+.+| .+.|.|..
T Consensus 47 ~~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 456777787655442 233333 6788999999999977664321 001122334455554 67888866
Q ss_pred ecCC
Q 005160 523 IAVG 526 (711)
Q Consensus 523 en~G 526 (711)
.+.+
T Consensus 119 ~~~~ 122 (145)
T PF07691_consen 119 FNRG 122 (145)
T ss_dssp EECS
T ss_pred EECC
Confidence 5544
No 193
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=30.37 E-value=73 Score=38.64 Aligned_cols=54 Identities=30% Similarity=0.398 Sum_probs=38.8
Q ss_pred HHHHHHCCCCEEEE-cccCCcCCCCC--------------------Cceeecc-----cchHHHHHHHHHHcCCEEEEec
Q 005160 62 IQKAKDGGLDVIDT-YVFWNVHEPSP--------------------GNYNFEG-----RYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 62 l~k~Ka~G~NtV~~-yv~Wn~hEp~~--------------------G~ydF~g-----~~dl~~fl~la~~~GL~vilr~ 115 (711)
|.-+|.+|+++|+. +|+.-..++.. |.|--++ .+.+..+++.++++||-|||-.
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 89999999999996 67644444322 2222222 2478888999999999999874
No 194
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=30.26 E-value=52 Score=40.63 Aligned_cols=75 Identities=19% Similarity=0.337 Sum_probs=49.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE-cc-----------cCCcCC------CCCCceeecccchHHHHHHHHHH-cCCEEEEe
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDT-YV-----------FWNVHE------PSPGNYNFEGRYDLVRFIKLVQK-AGLYVHLR 114 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~-yv-----------~Wn~hE------p~~G~ydF~g~~dl~~fl~la~~-~GL~vilr 114 (711)
|-+.|+.+|+++|+.|.|.|.. .+ .-+.|+ ..-++|.|+ |+..+++-+++ -++.-|--
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeeeeh
Confidence 7799999999999999999983 22 223333 223568888 99999988865 47665422
Q ss_pred cCcccccccC-CCCCCcEeeecCC
Q 005160 115 IGPYICAEWN-FGGFPVWLKFVQG 137 (711)
Q Consensus 115 ~GPyicaEw~-~GG~P~WL~~~p~ 137 (711)
+ -|+ ...--.||+..|+
T Consensus 217 v------V~NHtAnns~WlleHPe 234 (1521)
T KOG3625|consen 217 V------VYNHTANNSKWLLEHPE 234 (1521)
T ss_pred h------hhhccccCCchhHhCch
Confidence 2 011 1122467777765
No 195
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=29.72 E-value=1.2e+02 Score=34.90 Aligned_cols=56 Identities=25% Similarity=0.385 Sum_probs=45.9
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 48 IHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 48 ~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
.-|.+.|.+.-++.++++.++|++.|++...-|.. +++...++.|+++|+.|.+..
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 44667788888899999999999999998876543 268889999999999886553
No 196
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=29.48 E-value=1.9e+02 Score=33.05 Aligned_cols=90 Identities=18% Similarity=0.280 Sum_probs=52.8
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEc-ccCCcC--C--CCCCceeec-----cc-----chHHHHHHHHH-HcCCEEEEecCc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTY-VFWNVH--E--PSPGNYNFE-----GR-----YDLVRFIKLVQ-KAGLYVHLRIGP 117 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~y-v~Wn~h--E--p~~G~ydF~-----g~-----~dl~~fl~la~-~~GL~vilr~GP 117 (711)
+-+.|+++|+.++++|+|+|..- +----. . ....+..|+ .. .++.++++.++ ++||.++.-.
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv-- 97 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV-- 97 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE--
Confidence 55799999999999999999842 211000 0 001122111 11 38999998885 7999977443
Q ss_pred ccccccCCCC-CCcEeeecCCeeeccCChhHHH
Q 005160 118 YICAEWNFGG-FPVWLKFVQGISFRTDNKPFKH 149 (711)
Q Consensus 118 yicaEw~~GG-~P~WL~~~p~~~~R~~d~~y~~ 149 (711)
=|+.-. ==.||...|+.-.-..+.++++
T Consensus 98 ----V~NHtA~nS~Wl~eHPEagYN~~nsPHL~ 126 (423)
T PF14701_consen 98 ----VLNHTANNSPWLREHPEAGYNLENSPHLR 126 (423)
T ss_pred ----eeccCcCCChHHHhCcccccCCCCCcchh
Confidence 122211 1368888887544444444443
No 197
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=29.44 E-value=1.6e+02 Score=28.14 Aligned_cols=91 Identities=14% Similarity=0.237 Sum_probs=46.0
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec-ccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEe
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFE-GRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWL 132 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL 132 (711)
.+.+.+..++.++++|+..+-+|.....+. ......++ |..|-..-+..|+++|+. . |-|-++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 467889999999999999999998772221 11111222 567889999999999983 2 233444
Q ss_pred eecCCeeeccCChhHHHHHHHHHHHHHHHhhh
Q 005160 133 KFVQGISFRTDNKPFKHAMQNFTQKIVLMMKD 164 (711)
Q Consensus 133 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~ 164 (711)
--+ .-..+..+.+.+..|++.+.+.|..
T Consensus 100 avD----~d~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 100 AVD----YDATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp E------TS-B-HH-------HHHHHHHHHGG
T ss_pred Eee----cCCCchhhhhHHHHHHHHHHHHHhh
Confidence 322 1224667778888888888888874
No 198
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.25 E-value=18 Score=36.10 Aligned_cols=64 Identities=25% Similarity=0.329 Sum_probs=41.6
Q ss_pred EEEEEecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCC--ceeecccchHHHHHHHHHHcCCEEEEe
Q 005160 43 LFSGSIHYPRS---SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPG--NYNFEGRYDLVRFIKLVQKAGLYVHLR 114 (711)
Q Consensus 43 ~~sg~~Hy~r~---~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G--~ydF~g~~dl~~fl~la~~~GL~vilr 114 (711)
+-+|--.|.|+ .|-.-. +-+.++|++.+-.- .--..| -|||-...+|.+|.++|+++||.+.|-
T Consensus 118 VAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvD-----TaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 118 VAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVD-----TAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred EeccccchhhccCcCccccH---HHHHhcCCCEEEEe-----cccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 34455555564 222222 24567888865431 112334 599988889999999999999998765
No 199
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=28.31 E-value=7.3e+02 Score=27.21 Aligned_cols=128 Identities=21% Similarity=0.336 Sum_probs=74.2
Q ss_pred CHhHHHHHHHHHHHCC-CCEEEEcccCCcCCC-CCCceeec-ccchHHHHHHHHHHc-CCEEEEecCcccccccCCCCCC
Q 005160 54 SHEMWEGLIQKAKDGG-LDVIDTYVFWNVHEP-SPGNYNFE-GRYDLVRFIKLVQKA-GLYVHLRIGPYICAEWNFGGFP 129 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G-~NtV~~yv~Wn~hEp-~~G~ydF~-g~~dl~~fl~la~~~-GL~vilr~GPyicaEw~~GG~P 129 (711)
..+.|.|.++++...+ ...|+. |+.-| .||-=++. ...-++++++.+++. .+-|++...|.+
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~iel----NiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~---------- 172 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIEL----NISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNI---------- 172 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEE----EccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCH----------
Confidence 4788999999999999 899999 65555 35532333 222666777676654 455666654421
Q ss_pred cEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccc---cccC---CCc-eEEe----ccccCccCcccccCch-hHH
Q 005160 130 VWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKL---FKSQ---GGP-IILS----QIENEYEPEREEFGSA-GEA 197 (711)
Q Consensus 130 ~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~---~~~~---gGp-II~~----QiENEyg~~~~~~~~~-~~~ 197 (711)
+.+ ..+++.+.+++. ...| -++ |..- -..||.|.++ +.. -..
T Consensus 173 -------------------~di----~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLS---G~~ikp~ 226 (310)
T COG0167 173 -------------------TDI----DEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLS---GPPLKPI 226 (310)
T ss_pred -------------------HHH----HHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcC---cccchHH
Confidence 111 222222222221 1111 012 2222 2568888763 322 223
Q ss_pred HHHHHHHHHHHcCCCcceeecCCC
Q 005160 198 YMKWAAEMAVELNTEVPWVMCKEE 221 (711)
Q Consensus 198 y~~~l~~~~~~~g~~vp~~~~~~~ 221 (711)
=++++++++++.+.++|++-+.|-
T Consensus 227 al~~v~~l~~~~~~~ipIIGvGGI 250 (310)
T COG0167 227 ALRVVAELYKRLGGDIPIIGVGGI 250 (310)
T ss_pred HHHHHHHHHHhcCCCCcEEEecCc
Confidence 478899999999989999877663
No 200
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=27.72 E-value=4.6e+02 Score=28.20 Aligned_cols=76 Identities=20% Similarity=0.308 Sum_probs=55.2
Q ss_pred EEECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccc--chHHHHHHHHHHcCCEE
Q 005160 34 LIINGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGR--YDLVRFIKLVQKAGLYV 111 (711)
Q Consensus 34 f~~dGkp~~~~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~--~dl~~fl~la~~~GL~v 111 (711)
-...|.++.++.|-|-- =..|+-+..-+..|++|.+.++- ...-|+-.-|+|.|. .-|...-+.++++||.|
T Consensus 39 ~~g~~~~~~viAGPCsv--Es~E~i~~~A~~vk~~Ga~~lRG----gafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~v 112 (286)
T COG2876 39 VIGEGRALRVIAGPCSV--ESEEQVRETAESVKAAGAKALRG----GAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPV 112 (286)
T ss_pred eecCCcceEEEecCccc--CCHHHHHHHHHHHHHcchhhccC----CcCCCCCCcccccccCHHHHHHHHHHHHHcCCee
Confidence 33444456666665432 15677788889999999999998 555677777999864 56666667788899999
Q ss_pred EEec
Q 005160 112 HLRI 115 (711)
Q Consensus 112 ilr~ 115 (711)
+-+.
T Consensus 113 vtEv 116 (286)
T COG2876 113 VTEV 116 (286)
T ss_pred EEEe
Confidence 8875
No 201
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.66 E-value=2.4e+02 Score=30.76 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=44.3
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEccc--CCc--C-CCC------------------------CCceeecccchHHHHHHH
Q 005160 53 SSHEMWEGLIQKAKDGGLDVIDTYVF--WNV--H-EPS------------------------PGNYNFEGRYDLVRFIKL 103 (711)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~NtV~~yv~--Wn~--h-Ep~------------------------~G~ydF~g~~dl~~fl~l 103 (711)
++.+..++.|+.|...++|++...+- |.+ . .|. .|.|- ..++.++++.
T Consensus 14 ~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~y 90 (326)
T cd06564 14 YSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAY 90 (326)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHH
Confidence 37899999999999999999998653 322 1 111 11222 2499999999
Q ss_pred HHHcCCEEEEec
Q 005160 104 VQKAGLYVHLRI 115 (711)
Q Consensus 104 a~~~GL~vilr~ 115 (711)
|+++|+.||-.+
T Consensus 91 A~~rgI~vIPEI 102 (326)
T cd06564 91 AKDRGVNIIPEI 102 (326)
T ss_pred HHHcCCeEeccC
Confidence 999999998663
No 202
>PRK15492 triosephosphate isomerase; Provisional
Probab=27.30 E-value=1.2e+02 Score=32.22 Aligned_cols=48 Identities=15% Similarity=0.109 Sum_probs=37.2
Q ss_pred HHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 005160 63 QKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 63 ~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 116 (711)
.++|++|++.|-+ +|.|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 88 ~mLkd~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 88 LMLKEIGTQLVMI----GHSERRH-KFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHcCCCEEEE----Ccccccc-ccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 4799999999999 7777665 222 2334566678899999999999987
No 203
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=26.62 E-value=1.6e+02 Score=32.37 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=46.5
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEccc----CCcCCC------CCCcee--------ecccchHHHHHHHHHHcCCEEEEe
Q 005160 53 SSHEMWEGLIQKAKDGGLDVIDTYVF----WNVHEP------SPGNYN--------FEGRYDLVRFIKLVQKAGLYVHLR 114 (711)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~NtV~~yv~----Wn~hEp------~~G~yd--------F~g~~dl~~fl~la~~~GL~vilr 114 (711)
.+.+..++.|+.|...++|++..++- |.+.-+ ..|.+. |=-..++.++++.|++.|+.||-.
T Consensus 15 ~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 15 FTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 38899999999999999999999874 643211 123221 001349999999999999999966
Q ss_pred c
Q 005160 115 I 115 (711)
Q Consensus 115 ~ 115 (711)
+
T Consensus 95 i 95 (329)
T cd06568 95 I 95 (329)
T ss_pred c
Confidence 4
No 204
>PRK06703 flavodoxin; Provisional
Probab=26.55 E-value=3.1e+02 Score=25.97 Aligned_cols=100 Identities=10% Similarity=-0.037 Sum_probs=58.7
Q ss_pred ECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec---ccchHHHHHHHHHHcCCEEE
Q 005160 36 INGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFE---GRYDLVRFIKLVQKAGLYVH 112 (711)
Q Consensus 36 ~dGkp~~~~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~---g~~dl~~fl~la~~~GL~vi 112 (711)
+.....++++...+-.-.+|+.+++-+..+++.-++.....+|-. ++++ .....+.+-+..++.|..++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~--------g~~~y~~~~~a~~~l~~~l~~~G~~~~ 117 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGS--------GDTAYPLFCEAVTIFEERLVERGAELV 117 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEcc--------CCCChHHHHHHHHHHHHHHHHCCCEEc
Confidence 445556666554443333455677777777766566555555521 1211 12345556777789999887
Q ss_pred EecCcccccccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhh
Q 005160 113 LRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMK 163 (711)
Q Consensus 113 lr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~ 163 (711)
.++ .. ++.-.++..-++++++|.++|++.++
T Consensus 118 ~~~--~~------------------~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 118 QEG--LK------------------IELAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ccC--eE------------------EecCCCchhHHHHHHHHHHHHHHHHH
Confidence 764 00 11122234677888999999887766
No 205
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=26.44 E-value=1.2e+02 Score=31.86 Aligned_cols=50 Identities=26% Similarity=0.500 Sum_probs=40.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEE-EecCccccc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVH-LRIGPYICA 121 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi-lr~GPyica 121 (711)
..+.-++.++++|++|+ -|+.+| +|.+ +-++.|++.|-..| |-+|||..+
T Consensus 111 ~~~~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 111 QFDKLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred CHHHHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 44566788999999999 677755 5665 67999999999966 999999865
No 206
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=26.42 E-value=1.1e+02 Score=34.03 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=39.3
Q ss_pred CCEEeEEEEEEecC---------------------CCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccc
Q 005160 37 NGQRRILFSGSIHY---------------------PRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRY 95 (711)
Q Consensus 37 dGkp~~~~sg~~Hy---------------------~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~ 95 (711)
.+++..+.|.+.|| .|+..+.-++.|++.++.|..-+- |.=+.=...-|.+|
T Consensus 139 ~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~--vvat~Gtt~~Ga~D----- 211 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFA--VVATAGTTNTGAID----- 211 (373)
T ss_dssp CSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEE--EEEEBS-TTTSBB------
T ss_pred ccccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhccccccccccee--eeccCCCccccccc-----
Confidence 56788888888998 334445556666666666654311 11123334445554
Q ss_pred hHHHHHHHHHHcCCEEEEe
Q 005160 96 DLVRFIKLVQKAGLYVHLR 114 (711)
Q Consensus 96 dl~~fl~la~~~GL~vilr 114 (711)
|+.++.++|+++++++.+-
T Consensus 212 ~l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 212 PLEEIADICEKYNIWLHVD 230 (373)
T ss_dssp SHHHHHHHHHHCT-EEEEE
T ss_pred CHHHHhhhccccceeeeec
Confidence 7777777777777666554
No 207
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=26.41 E-value=2.2e+02 Score=29.94 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=37.2
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCCCcee--ecccchHHHH-HHHHHHcCCEEEEecC
Q 005160 59 EGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYN--FEGRYDLVRF-IKLVQKAGLYVHLRIG 116 (711)
Q Consensus 59 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~yd--F~g~~dl~~f-l~la~~~GL~vilr~G 116 (711)
.++|.||+..|+.+|-+--+|.+--..++.|- |+ .|..+ ...|.+.|+.+-+..|
T Consensus 14 ~eDlekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~---rl~~~E~~Ra~~~Gl~~~vavG 71 (254)
T COG1099 14 FEDLEKMALSGIREVITLAHDPYPMKTAEVYLDHFR---RLLGVEPERAEKAGLKLKVAVG 71 (254)
T ss_pred HHHHHHHHHhChhhhhhcccCCCCcccHHHHHHHHH---HHHccchhhHHhhCceeeEEec
Confidence 37899999999999999666664333444441 22 22222 3458999999888876
No 208
>PRK14567 triosephosphate isomerase; Provisional
Probab=26.38 E-value=1.3e+02 Score=31.90 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=37.0
Q ss_pred HHHHHCCCCEEEEcccCCcCCCCCCceeec-ccchHHHHHHHHHHcCCEEEEecC
Q 005160 63 QKAKDGGLDVIDTYVFWNVHEPSPGNYNFE-GRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 63 ~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~vilr~G 116 (711)
.++|++|++.|-+ +|.|.+. .|. -+..+.+=++.|.++||.+|++.|
T Consensus 79 ~mLkd~G~~yvii----GHSERR~---~f~Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 79 RMLEDIGCDYLLI----GHSERRS---LFAESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHcCCCEEEE----CcccccC---ccCCCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 4789999999998 7777664 232 334566778889999999999987
No 209
>PLN02561 triosephosphate isomerase
Probab=26.18 E-value=1.3e+02 Score=31.86 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=37.8
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCCceeec-ccchHHHHHHHHHHcCCEEEEecC
Q 005160 62 IQKAKDGGLDVIDTYVFWNVHEPSPGNYNFE-GRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 62 l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~-g~~dl~~fl~la~~~GL~vilr~G 116 (711)
..++|++|++.|-+ +|.|.+. .|. -+..+.+=++.|.++||.+|++.|
T Consensus 81 ~~mL~d~G~~~vii----GHSERR~---~f~Etd~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 81 AEMLVNLGIPWVIL----GHSERRA---LLGESNEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHHcCCCEEEE----CcccccC---ccCCChHHHHHHHHHHHHCcCEEEEEcC
Confidence 34789999999999 8877665 343 234666778889999999999997
No 210
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=25.85 E-value=50 Score=36.03 Aligned_cols=114 Identities=23% Similarity=0.383 Sum_probs=60.2
Q ss_pred CEEEEcccCCcCCCC-CCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeeecCCeeeccCChhHHH
Q 005160 71 DVIDTYVFWNVHEPS-PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKH 149 (711)
Q Consensus 71 NtV~~yv~Wn~hEp~-~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~ 149 (711)
+.|.++|.|++|=-. |. ...++.|+++|..|+=- .|. ||+.|. .|+.. +.-+..+-.
T Consensus 27 ~yiD~fvywsh~~i~iP~----------~~widaAHrnGV~vLGT---iif-e~~~~~--~~~~~---ll~~~~~g~--- 84 (311)
T PF03644_consen 27 QYIDIFVYWSHGLITIPP----------AGWIDAAHRNGVKVLGT---IIF-EWGGGA--EWCEE---LLEKDEDGS--- 84 (311)
T ss_dssp GG-SEEEET-TBSSE-------------HHHHHHHHHTT--EEEE---EEE-EEE--H--HHHHH---HT---TTS----
T ss_pred cceeeEeecccccccCCC----------chhHHHHHhcCceEEEE---EEe-cCCchH--HHHHH---HHcCCcccc---
Confidence 357788889865421 21 26899999999998622 233 777543 56543 100122222
Q ss_pred HHHHHHHHHHHHhhhccccccCCCceEEeccccCccCcccccCchhHHHHHHHHHHHHHcCC--Ccceee
Q 005160 150 AMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEFGSAGEAYMKWAAEMAVELNT--EVPWVM 217 (711)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~--~vp~~~ 217 (711)
.++.++|+++.+-+.+ + | +++-+|+..+... ....=+++++.|++.+++ .. .|-|+.
T Consensus 85 --~~~A~kLi~ia~~yGF---D-G--w~iN~E~~~~~~~--~~~~l~~F~~~l~~~~~~-~~~~~v~WYD 143 (311)
T PF03644_consen 85 --FPYADKLIEIAKYYGF---D-G--WLINIETPLSGPE--DAENLIDFLKYLRKEAHE-NPGSEVIWYD 143 (311)
T ss_dssp ---HHHHHHHHHHHHHT------E--EEEEEEESSTTGG--GHHHHHHHHHHHHHHHHH-T-T-EEEEES
T ss_pred --cHHHHHHHHHHHHcCC---C-c--eEEEecccCCchh--HHHHHHHHHHHHHHHhhc-CCCcEEEEee
Confidence 3456777777774333 2 3 7888999876410 112346788888888887 32 344554
No 211
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=25.61 E-value=4.5e+02 Score=30.04 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=58.7
Q ss_pred CcEEECCEEeEEEEEEecCCCC---CHhHHHHHHHHHHHCCCCE--E--E-EcccCCcCCCCCCceeecccchHHHHHHH
Q 005160 32 KALIINGQRRILFSGSIHYPRS---SHEMWEGLIQKAKDGGLDV--I--D-TYVFWNVHEPSPGNYNFEGRYDLVRFIKL 103 (711)
Q Consensus 32 ~~f~~dGkp~~~~sg~~Hy~r~---~~~~W~~~l~k~Ka~G~Nt--V--~-~yv~Wn~hEp~~G~ydF~g~~dl~~fl~l 103 (711)
+...+.+.-|+++.+.-+-++. .++.-+.-.+.+++.|++. | . .|. -|+--|.+..++++ ..-+.+-|+.
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYl-INLASpd~e~rekS-v~~~~~eL~r 226 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYL-INLANPDKEKREKS-YDAFLDDLQR 226 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCce-ecCCCCCHHHHHHH-HHHHHHHHHH
Confidence 3456778999999888877654 4455566667788888763 3 2 233 67777777777766 3467788899
Q ss_pred HHHcCCE-EEEecC
Q 005160 104 VQKAGLY-VHLRIG 116 (711)
Q Consensus 104 a~~~GL~-vilr~G 116 (711)
|.+.|.. |++-||
T Consensus 227 A~~LGa~~VV~HPG 240 (413)
T PTZ00372 227 CEQLGIKLYNFHPG 240 (413)
T ss_pred HHHcCCCEEEECCC
Confidence 9999998 557787
No 212
>PLN02389 biotin synthase
Probab=25.53 E-value=92 Score=34.97 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCCEEEEccc--CCcCCCCCCceeecccchHHHHHHHHHHcCCEEE
Q 005160 59 EGLIQKAKDGGLDVIDTYVF--WNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVH 112 (711)
Q Consensus 59 ~~~l~k~Ka~G~NtV~~yv~--Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi 112 (711)
++.++++|++|++.+...+- -.++...-..-+|+ +..+.++.|++.||.|.
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 57888999999998876321 11111111111444 66688999999999873
No 213
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=25.32 E-value=1.7e+02 Score=26.85 Aligned_cols=89 Identities=15% Similarity=0.084 Sum_probs=51.4
Q ss_pred cchHHHHHHHHHHhhccceeEEEcCCcEEECCEEeEEEEEEe-cC-----CCCCHhHHHHHHHHHHHCCCCEEEEcccCC
Q 005160 7 SKSIFMSIVLSLCLHLTLSSVTYDSKALIINGQRRILFSGSI-HY-----PRSSHEMWEGLIQKAKDGGLDVIDTYVFWN 80 (711)
Q Consensus 7 ~~~~~~~~~~~l~~~~~~~~v~~d~~~f~~dGkp~~~~sg~~-Hy-----~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn 80 (711)
+.+....++-.|.... -.-+-++.+.=.++|.+.+---.+. .. .-+|++...+.++.+++.|+..|=..
T Consensus 12 ~~~~g~~v~~~l~~~G-~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~---- 86 (116)
T PF13380_consen 12 PGKFGYRVLRNLKAAG-YEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQ---- 86 (116)
T ss_dssp TTSHHHHHHHHHHHTT--EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-----
T ss_pred CCChHHHHHHHHHhCC-CEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEE----
Confidence 3444444444444321 2455666677788887744222222 11 11488999999999999998877661
Q ss_pred cCCCCCCceeecccchHHHHHHHHHHcCCEEE
Q 005160 81 VHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVH 112 (711)
Q Consensus 81 ~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vi 112 (711)
+| ..-++++++|+++||.++
T Consensus 87 -----~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 87 -----PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp -----TT-------S--HHHHHHHHHTT-EEE
T ss_pred -----cc-------hHHHHHHHHHHHcCCEEE
Confidence 22 255688999999999865
No 214
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=25.22 E-value=5.7e+02 Score=27.45 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=17.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEE
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDT 75 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~ 75 (711)
.++.|.+..+++.+.|++.|++
T Consensus 111 ~~~~~~~~a~~~~~~gad~iel 132 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALEL 132 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEE
Confidence 5677888778777778888887
No 215
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.20 E-value=1.3e+02 Score=23.65 Aligned_cols=54 Identities=15% Similarity=0.277 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEE
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYV 111 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~v 111 (711)
..-.+.+.-+.+.|+|.++++. +..++.....+-|.-. +.++.++..+++|..|
T Consensus 11 G~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 11 GGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred cHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 3456778889999999998875 3333234455555432 4889999999999865
No 216
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=25.04 E-value=1.2e+02 Score=32.00 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=38.5
Q ss_pred EECCEEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEEE-cccCCcCCC-CCCce
Q 005160 35 IINGQRRILFSGSIHYPRS-SHEMWEGLIQKAKDGGLDVIDT-YVFWNVHEP-SPGNY 89 (711)
Q Consensus 35 ~~dGkp~~~~sg~~Hy~r~-~~~~W~~~l~k~Ka~G~NtV~~-yv~Wn~hEp-~~G~y 89 (711)
.+.|+++..+.|.+|+..- ...+-+--++-||++|+..|=. .-.=.+++. +||.+
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~tna~Gsl~~~~~pGdl 104 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLILTNAAGGLRQDWGPGTP 104 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEEEcccccCCCCCCCCCE
Confidence 4689999999999997554 4555578899999999987643 222234442 46654
No 217
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=24.84 E-value=1.4e+02 Score=31.29 Aligned_cols=61 Identities=23% Similarity=0.436 Sum_probs=43.4
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec-----ccc-----hHH-HHH-HHHHHcCCEEEEecCccc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFE-----GRY-----DLV-RFI-KLVQKAGLYVHLRIGPYI 119 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~-----g~~-----dl~-~fl-~la~~~GL~vilr~GPyi 119 (711)
..+..++.++.+.++|++.-.. +||-.||||.+. +.. .+. ..+ ++|+++|+.+-+-|=|+.
T Consensus 67 ~~~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~ 139 (259)
T PF00120_consen 67 GEDFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFS 139 (259)
T ss_dssp THHHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSST
T ss_pred HHHHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccC
Confidence 4677889999999999987776 899999998764 111 111 222 668999999999998875
No 218
>PRK10658 putative alpha-glucosidase; Provisional
Probab=24.82 E-value=2.5e+02 Score=34.02 Aligned_cols=66 Identities=20% Similarity=0.365 Sum_probs=46.3
Q ss_pred CHhHHHHHHHHHHHCCCCE--EEEcccCCcCCCCCCceeecccc--hHHHHHHHHHHcCCEEEEecCcccc
Q 005160 54 SHEMWEGLIQKAKDGGLDV--IDTYVFWNVHEPSPGNYNFEGRY--DLVRFIKLVQKAGLYVHLRIGPYIC 120 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~Nt--V~~yv~Wn~hEp~~G~ydF~g~~--dl~~fl~la~~~GL~vilr~GPyic 120 (711)
+.+.-.+.++++|+.|+-+ |.+-.+|--. -.-+.|.|+..+ |..++++..++.|+++++..=|||.
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~-~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~ 350 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWMKE-FQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIA 350 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhhcC-CceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcC
Confidence 4555678889999998864 3333456321 112456665433 8899999999999999999988874
No 219
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=24.77 E-value=1.8e+02 Score=30.94 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=53.2
Q ss_pred cEEECCEEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec--ccchHHHHHHHHHHcCC
Q 005160 33 ALIINGQRRILFSGSIHYPRS-SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFE--GRYDLVRFIKLVQKAGL 109 (711)
Q Consensus 33 ~f~~dGkp~~~~sg~~Hy~r~-~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~--g~~dl~~fl~la~~~GL 109 (711)
.+.+.+..+++++| +-.+ ..+.-.+.-+.+|+.|....+.|++=+...| +.|. |..-|..+-+.|++.||
T Consensus 18 ~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~~~~~~~Gl 90 (260)
T TIGR01361 18 GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLRRAADEHGL 90 (260)
T ss_pred CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHHHHHHHhCC
Confidence 35565444666777 3233 5666677888899999998887777644443 3455 34677788889999999
Q ss_pred EEEEec
Q 005160 110 YVHLRI 115 (711)
Q Consensus 110 ~vilr~ 115 (711)
.++-.|
T Consensus 91 ~~~t~~ 96 (260)
T TIGR01361 91 PVVTEV 96 (260)
T ss_pred CEEEee
Confidence 998876
No 220
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=24.76 E-value=4.9e+02 Score=24.90 Aligned_cols=103 Identities=20% Similarity=0.294 Sum_probs=60.4
Q ss_pred Cceeecccch-HHHHHHHHHHc-CCEEEEecCcccccccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhh
Q 005160 87 GNYNFEGRYD-LVRFIKLVQKA-GLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKD 164 (711)
Q Consensus 87 G~ydF~g~~d-l~~fl~la~~~-GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~ 164 (711)
|.|=++.... +..|++...+. ...+|.|--|=..-++ +-...||.+.++- ++=+|.-+...... +.+.++
T Consensus 1 Gayl~~~~~~~~~~~l~~~~~~~~~l~itR~~Pe~~~~~--~~~viWlT~~~~~--~~I~Pt~L~~l~~~---i~~fl~- 72 (136)
T PF05763_consen 1 GAYLISSKEKKIYEFLKELSEGRPGLAITRRNPEEWREK--NTPVIWLTKVEGE--NAISPTNLHKLLDT---IVRFLK- 72 (136)
T ss_pred CcEEecCcchhHHHHHHHHhccCcEEEEEecChhhcccc--CCcEEEEeccCCC--CccCchhhHHHHHH---HHHHHH-
Confidence 4565664433 67778777554 5778889555554444 4456799986642 34455444443333 333333
Q ss_pred ccccccCCCceEEec------cccCccCcccccCchhHHHHHHHHHHHHHcC
Q 005160 165 EKLFKSQGGPIILSQ------IENEYEPEREEFGSAGEAYMKWAAEMAVELN 210 (711)
Q Consensus 165 ~~~~~~~gGpII~~Q------iENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 210 (711)
.+++.||.+. ++|.+- .--+|+..|++.+-..+
T Consensus 73 -----~~~~~vViiD~lEYL~l~NgF~--------~v~KFL~~LkD~~~~~~ 111 (136)
T PF05763_consen 73 -----ENGNGVVIIDGLEYLILENGFE--------SVLKFLASLKDYALLNN 111 (136)
T ss_pred -----hCCCcEEEEecHHHHHHHcCHH--------HHHHHHHHhHHHeeccC
Confidence 2345688877 455542 34678999999885443
No 221
>PLN03059 beta-galactosidase; Provisional
Probab=24.71 E-value=3.5e+02 Score=33.70 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=46.5
Q ss_pred CCCceEEEEEEeCCCCCC------ceEEeeCCC-ceEEEEECCeeeeeeecccccCCccCCccCCCCCCCCCCCCCCCCe
Q 005160 598 QQPLTWYKAYFDAPEGDE------PLAMDMSSM-NKGQVLINGQNIGRYWTAIANGACRNCNYTGTYRPTNCGFDCGKPS 670 (711)
Q Consensus 598 ~~~~~~yk~~F~~p~~~d------~t~Ld~~g~-gKG~v~VNG~nlGRYW~~~~~G~~~~~~~~G~y~~~~~~~~~~~PQ 670 (711)
..+..||+++|+++.... ...|.+.+. -.-+|||||.-+|.-.-. . . +++
T Consensus 468 ~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~--~--------~-------------~~~ 524 (840)
T PLN03059 468 ATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGE--L--------S-------------NPK 524 (840)
T ss_pred CCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEee--c--------C-------------Ccc
Confidence 457899999999865421 123666655 358999999999986621 0 1 134
Q ss_pred eeeeecCcc-ccCCCCcEEEEE-Eeec
Q 005160 671 QQWYHVPRS-WLKPRQNLLIVF-EEIS 695 (711)
Q Consensus 671 qtlYhvP~~-~Lk~g~N~Ivvf-E~~~ 695 (711)
-+ ++.+ =|+.|.|.|-|| |..|
T Consensus 525 ~~---~~~~v~l~~g~n~L~iLse~vG 548 (840)
T PLN03059 525 LT---FSQNVKLTVGINKISLLSVAVG 548 (840)
T ss_pred eE---EecccccCCCceEEEEEEEeCC
Confidence 33 4443 367899999877 4433
No 222
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=24.69 E-value=1.3e+02 Score=31.66 Aligned_cols=55 Identities=22% Similarity=0.156 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCCCCc-e--eec-ccchHHHHHHHHHHcCCEEEEec
Q 005160 57 MWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGN-Y--NFE-GRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 57 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~-y--dF~-g~~dl~~fl~la~~~GL~vilr~ 115 (711)
..++.++.++++|.++|.+.- .+...+. . .+. -...+.++.++|+++|+.+.|.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAG----YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecC----cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 567889999999999997621 1111110 0 011 01366788899999999999985
No 223
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=24.47 E-value=2.6e+02 Score=30.45 Aligned_cols=67 Identities=22% Similarity=0.445 Sum_probs=48.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEccc-CCc-CCCCCCc-----eeecccc--hHHHHHHHHHHcCCEEEEecCcccc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVF-WNV-HEPSPGN-----YNFEGRY--DLVRFIKLVQKAGLYVHLRIGPYIC 120 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~-Wn~-hEp~~G~-----ydF~g~~--dl~~fl~la~~~GL~vilr~GPyic 120 (711)
+.+.-++.++++++.||-+=.+++- |.. ++..-|. |+|+..+ |..++++..++.|++|++..=|+|+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~ 96 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLA 96 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCcee
Confidence 7788899999999999886666553 632 2322232 3444332 8999999999999999998877774
No 224
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.10 E-value=3.2e+02 Score=29.79 Aligned_cols=63 Identities=8% Similarity=0.096 Sum_probs=46.4
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcc----cCCcC-----CC-CCCcee-ecccchHHHHHHHHHHcCCEEEEec
Q 005160 53 SSHEMWEGLIQKAKDGGLDVIDTYV----FWNVH-----EP-SPGNYN-FEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~NtV~~yv----~Wn~h-----Ep-~~G~yd-F~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
++.+..++.|+.|...++|+...++ -|.+- +- +.|.+. |=-..|+.++++.|++.|+.||-.+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEee
Confidence 5799999999999999999999987 47431 11 122211 1112499999999999999999663
No 225
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=24.07 E-value=2.5e+02 Score=29.62 Aligned_cols=104 Identities=19% Similarity=0.237 Sum_probs=61.4
Q ss_pred EecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCC--EEEEecCcccc----
Q 005160 47 SIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGL--YVHLRIGPYIC---- 120 (711)
Q Consensus 47 ~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL--~vilr~GPyic---- 120 (711)
+.|+..-+.+.=.++|++=-++|.+.+-|-.+ ||.+ .+.+|++.|++.|+ .|++.+-|-..
T Consensus 138 e~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l 204 (274)
T cd00537 138 EGHPEAPSLEEDIKRLKRKVDAGADFIITQLF----------FDND---AFLRFVDRCRAAGITVPIIPGIMPLTSYKQA 204 (274)
T ss_pred CcCCCCCCHHHHHHHHHHHHHCCCCEEeeccc----------ccHH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHH
Confidence 44444443444345555555679999999443 3333 78899999999984 45655555321
Q ss_pred ---cccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhh
Q 005160 121 ---AEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKD 164 (711)
Q Consensus 121 ---aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~ 164 (711)
+++-.-.+|.|+.+.=. ....+.....+.-.++..++++.+.+
T Consensus 205 ~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 205 KRFAKLCGVEIPDWLLERLE-KLKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHHhhCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35556678998875110 00112233455666777777777763
No 226
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.96 E-value=1.9e+02 Score=30.75 Aligned_cols=50 Identities=28% Similarity=0.294 Sum_probs=40.7
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEe
Q 005160 53 SSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLR 114 (711)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr 114 (711)
.|.+.=++.+++..+.|+..|+++++.+. ...+...++.|+++|+.|..-
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~~G~~v~~~ 137 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND------------VRNLEVAIKAVKKAGKHVEGA 137 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHHCCCeEEEE
Confidence 46666788999999999999999887654 127888999999999987753
No 227
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=23.42 E-value=1.5e+02 Score=29.61 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=38.9
Q ss_pred HHHHHHHCCCCEEE-----EcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEe
Q 005160 61 LIQKAKDGGLDVID-----TYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLR 114 (711)
Q Consensus 61 ~l~k~Ka~G~NtV~-----~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr 114 (711)
..+.+++.|+.+|= |-|+|+--+..| .+.++++.++++|+.|++-
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 35678999999986 567899999888 8999999999999998765
No 228
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=23.28 E-value=70 Score=33.67 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=36.9
Q ss_pred HHHHHHCCCCEEEEcccCCcCCCCCCceee-cccchHHHHHHHHHHcCCEEEEecC
Q 005160 62 IQKAKDGGLDVIDTYVFWNVHEPSPGNYNF-EGRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 62 l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF-~g~~dl~~fl~la~~~GL~vilr~G 116 (711)
..++|++|++.|-+ +|.|.+. .| +.+..+.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii----GHSERR~---~f~Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 77 AEMLKDLGCKYVII----GHSERRQ---YFGETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HHHHHHTTESEEEE----SCHHHHH---HST-BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHhhCCEEEe----ccccccC---ccccccHHHHHHHHHHHHCCCEEEEEec
Confidence 45799999999998 7766542 22 3455888899999999999999987
No 229
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=23.11 E-value=1.6e+02 Score=32.30 Aligned_cols=48 Identities=23% Similarity=0.444 Sum_probs=38.1
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCE
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLY 110 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~ 110 (711)
....|+..-.-.+.+||-+|++|-+|+.-+..= |++.||.-.+..=-.
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~---------d~e~~Lsdl~~APe~ 178 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENKCV---------DLEGFLSDLESAPEG 178 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCcee---------cHHHHHHHHhhCCCC
Confidence 455799999999999999999999998765432 677888877765444
No 230
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=23.05 E-value=1.7e+02 Score=36.01 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=44.7
Q ss_pred CHhHHHHHHHHHHHCCCC--EEEEcccCCcCCCCCCceeeccc----chHHHHHHHHHHcCCEEEEecCcccc
Q 005160 54 SHEMWEGLIQKAKDGGLD--VIDTYVFWNVHEPSPGNYNFEGR----YDLVRFIKLVQKAGLYVHLRIGPYIC 120 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~N--tV~~yv~Wn~hEp~~G~ydF~g~----~dl~~fl~la~~~GL~vilr~GPyic 120 (711)
.-+.-+++.+.++++|+. ++-+-+.|. ++.=||+=+ .++..|++-.++.|+++++-+-|+|.
T Consensus 309 nls~~~dvv~~~~~agiPld~~~~DiDyM-----d~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is 376 (805)
T KOG1065|consen 309 NLSVVRDVVENYRAAGIPLDVIVIDIDYM-----DGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFIS 376 (805)
T ss_pred cHHHHHHHHHHHHHcCCCcceeeeehhhh-----hcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccc
Confidence 445568999999999998 555555553 222244321 26889999999999999999888774
No 231
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=22.83 E-value=5.4e+02 Score=26.66 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=57.6
Q ss_pred CcEEECCEEeEEEEEEecCCCC---C----------------------HhHHHHHHHHHHHCCCCEEEEcccCC-cCCCC
Q 005160 32 KALIINGQRRILFSGSIHYPRS---S----------------------HEMWEGLIQKAKDGGLDVIDTYVFWN-VHEPS 85 (711)
Q Consensus 32 ~~f~~dGkp~~~~sg~~Hy~r~---~----------------------~~~W~~~l~k~Ka~G~NtV~~yv~Wn-~hEp~ 85 (711)
..+.++|.++-+++.+...... . .+.-.+.++++| .+.+.|=+++.|. -++..
T Consensus 122 ~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~ 200 (250)
T PF09587_consen 122 AIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREAR-KKADVVIVSLHWGIEYENY 200 (250)
T ss_pred EEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCEEEEEeccCCCCCCC
Confidence 4567799999999988775221 0 155667888888 6899999999995 22222
Q ss_pred CCceeecccchHHHHHHHHHHcCCEEEEecCccc
Q 005160 86 PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYI 119 (711)
Q Consensus 86 ~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyi 119 (711)
| ..+..++.+.+-+.|..+|+.=+|-+
T Consensus 201 p-------~~~q~~~a~~lidaGaDiIiG~HpHv 227 (250)
T PF09587_consen 201 P-------TPEQRELARALIDAGADIIIGHHPHV 227 (250)
T ss_pred C-------CHHHHHHHHHHHHcCCCEEEeCCCCc
Confidence 2 12666778888889999999877654
No 232
>PLN03036 glutamine synthetase; Provisional
Probab=22.81 E-value=2.6e+02 Score=32.13 Aligned_cols=66 Identities=23% Similarity=0.485 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeec-ccc---------hHHHHH--HHHHHcCCEEEEecCccccccc
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFE-GRY---------DLVRFI--KLVQKAGLYVHLRIGPYICAEW 123 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~-g~~---------dl~~fl--~la~~~GL~vilr~GPyicaEw 123 (711)
+.-++..+.+.++|++.-.+ +||-.||||.|. +.. .+-+++ ++|+++|+.+-+-|=|+. ++|
T Consensus 230 ~i~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~-gd~ 303 (432)
T PLN03036 230 DISDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE-GDW 303 (432)
T ss_pred HHHHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC-CCc
Confidence 44455666789999998776 899999999886 211 222222 678999999998888863 456
Q ss_pred CCCC
Q 005160 124 NFGG 127 (711)
Q Consensus 124 ~~GG 127 (711)
..-|
T Consensus 304 ~GSG 307 (432)
T PLN03036 304 NGAG 307 (432)
T ss_pred CCCC
Confidence 6555
No 233
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=22.74 E-value=2.4e+02 Score=35.67 Aligned_cols=74 Identities=12% Similarity=0.070 Sum_probs=53.3
Q ss_pred ecCCCC---CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccc--chHHHHHHHHHHcCCEEEEecCcccccc
Q 005160 48 IHYPRS---SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGR--YDLVRFIKLVQKAGLYVHLRIGPYICAE 122 (711)
Q Consensus 48 ~Hy~r~---~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~--~dl~~fl~la~~~GL~vilr~GPyicaE 122 (711)
+|..|+ +.+.-++.++++++.++-+=.+++-|.+..- -+.|.|+.. -|..+|++..++.|+++++-.-|+|.+|
T Consensus 190 y~qSR~~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g-~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d 268 (978)
T PLN02763 190 YQQCRWSYESAKRVAEIARTFREKKIPCDVVWMDIDYMDG-FRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAE 268 (978)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcC-CCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccC
Confidence 344553 5667788999999999887666665554432 234666543 3889999999999999988777877653
No 234
>PRK04302 triosephosphate isomerase; Provisional
Probab=22.71 E-value=1.5e+02 Score=30.42 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=41.1
Q ss_pred ecCCCCCHhHH--HHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 005160 48 IHYPRSSHEMW--EGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 48 ~Hy~r~~~~~W--~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 116 (711)
.|+........ +.-++++|++|++.|-+ .+-|.. -.|. .+.++++.|+++||.+|+..|
T Consensus 62 q~~~~~~~G~~tg~~~~~~l~~~G~~~vii----~~ser~---~~~~---e~~~~v~~a~~~Gl~~I~~v~ 122 (223)
T PRK04302 62 QHVDPVEPGSHTGHILPEAVKDAGAVGTLI----NHSERR---LTLA---DIEAVVERAKKLGLESVVCVN 122 (223)
T ss_pred ccCCCCCCCCchhhhHHHHHHHcCCCEEEE----eccccc---cCHH---HHHHHHHHHHHCCCeEEEEcC
Confidence 57655432211 23488999999999988 443422 2343 588999999999999998865
No 235
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=22.65 E-value=7.3e+02 Score=28.08 Aligned_cols=85 Identities=15% Similarity=0.038 Sum_probs=47.1
Q ss_pred EeEEEEEEecCCCCCHhHH----HHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 40 RRILFSGSIHYPRSSHEMW----EGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 40 p~~~~sg~~Hy~r~~~~~W----~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
.+.+++|.+--...|+.+. .+.++++++.++.+ |+.+.=| |+.. .+....++.++.|++|+-.+
T Consensus 41 D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v---~~I~GNH-------D~~~--~l~~~~~~l~~~gi~vl~~~ 108 (407)
T PRK10966 41 DAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQL---VVLAGNH-------DSVA--TLNESRDLLAFLNTTVIASA 108 (407)
T ss_pred CEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcE---EEEcCCC-------CChh--hhhhHHHHHHHCCcEEEecc
Confidence 4677888886544444333 34566777777654 4434333 3322 24455677789999988544
Q ss_pred ------CcccccccCCCCCCcEeeecCC
Q 005160 116 ------GPYICAEWNFGGFPVWLKFVQG 137 (711)
Q Consensus 116 ------GPyicaEw~~GG~P~WL~~~p~ 137 (711)
.|... +-..|....|+.-.|-
T Consensus 109 ~~~~~~~~v~l-~~~~g~~~~~i~~lPy 135 (407)
T PRK10966 109 SDDLGHQVIIL-PRRDGTPGAVLCAIPF 135 (407)
T ss_pred cccCCcceEEE-ecCCCCeeeEEEECCC
Confidence 12211 2234545567765554
No 236
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=22.48 E-value=1.7e+02 Score=27.74 Aligned_cols=46 Identities=28% Similarity=0.341 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 57 MWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 57 ~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
.-++.++++++.|+.+|.+ .-|.... ....+.+.|++.|+.+++..
T Consensus 17 ~~~e~v~~A~~~Gl~~i~i----TDH~~~~---------~~~~~~~~~~~~~i~vi~G~ 62 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAI----TDHNNFA---------GYPDFYKEAKKKGIKVIPGV 62 (175)
T ss_dssp SHHHHHHHHHHTTESEEEE----EEETTTT---------THHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHcCCCEEEE----cCCcccc---------cchHHHHHHHhcCCceEEeE
Confidence 3467889999999999998 5563333 46788999999999988754
No 237
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=22.28 E-value=3.4e+02 Score=25.11 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=47.5
Q ss_pred ECCEEeEEEEEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 36 INGQRRILFSGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 36 ~dGkp~~~~sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
+.|..+.+.+|.. ...-+++.+.+.++.+.+.|+-++-+.+-=.++ ..| ++++++|.+++|-+|.-|
T Consensus 40 l~~gElvlttg~~-~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~-~iP-----------~~~i~~A~~~~lPli~ip 106 (123)
T PF07905_consen 40 LRGGELVLTTGYA-LRDDDEEELREFIRELAEKGAAGLGIKTGRYLD-EIP-----------EEIIELADELGLPLIEIP 106 (123)
T ss_pred CCCCeEEEECCcc-cCCCCHHHHHHHHHHHHHCCCeEEEEeccCccc-cCC-----------HHHHHHHHHcCCCEEEeC
Confidence 5566666665543 223366789999999999999998885432222 222 488999999999998776
No 238
>PRK07534 methionine synthase I; Validated
Probab=22.21 E-value=7.9e+02 Score=27.12 Aligned_cols=74 Identities=9% Similarity=0.015 Sum_probs=42.2
Q ss_pred HHHHHHHHHc-CCEEEEecCcccccccCCCCCCcEeeecCCeeeccCChh-HHHHHHHHHHHHHHHhhhccccccCCCce
Q 005160 98 VRFIKLVQKA-GLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNKP-FKHAMQNFTQKIVLMMKDEKLFKSQGGPI 175 (711)
Q Consensus 98 ~~fl~la~~~-GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~-y~~~~~~~~~~l~~~~~~~~~~~~~gGpI 175 (711)
..++++.... .+.+++.| |.|.|.|... .... ..+|. |.+.+++|. ..|=.|
T Consensus 221 ~~l~~~~~~~~~~pl~vyP---------NaG~p~~~~~--~~~~-~~~p~~~~~~~~~~~--------------~~Ga~i 274 (336)
T PRK07534 221 RTVLGFTAQGPERPIIAKG---------NAGIPKYVDG--HIHY-DGTPELMAEYAVLAR--------------DAGARI 274 (336)
T ss_pred HHHHHHHHhcCCCeEEEEc---------CCCCcccCCC--cccc-CCCHHHHHHHHHHHH--------------HcCCcE
Confidence 4556655443 57788887 7788988632 2111 22343 334444432 123355
Q ss_pred EEeccccCccCcccccCchhHHHHHHHHHHHHHc
Q 005160 176 ILSQIENEYEPEREEFGSAGEAYMKWAAEMAVEL 209 (711)
Q Consensus 176 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~ 209 (711)
|+ |+ |+ .+.+|++.|++.++..
T Consensus 275 IG-------GC----CG-TtP~hI~~la~~l~~~ 296 (336)
T PRK07534 275 IG-------GC----CG-TMPEHLAAMRAALDAR 296 (336)
T ss_pred Ee-------ee----cC-CCHHHHHHHHHHHccC
Confidence 53 32 44 7889999999988653
No 239
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=21.91 E-value=8.8e+02 Score=26.17 Aligned_cols=75 Identities=8% Similarity=-0.052 Sum_probs=42.4
Q ss_pred hHHHHHHHHHH-cCCEEEEecCcccccccCCCCCCcEeeecCCeeeccCCh-hHHHHHHHHHHHHHHHhhhccccccCCC
Q 005160 96 DLVRFIKLVQK-AGLYVHLRIGPYICAEWNFGGFPVWLKFVQGISFRTDNK-PFKHAMQNFTQKIVLMMKDEKLFKSQGG 173 (711)
Q Consensus 96 dl~~fl~la~~-~GL~vilr~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~-~y~~~~~~~~~~l~~~~~~~~~~~~~gG 173 (711)
.+.++|+.+.+ ..+.+++.| ++|.|. ...++......++ .|.+.+++|.+. |=
T Consensus 227 ~~~~~l~~~~~~~~~pl~~~P---------NaG~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------------G~ 281 (304)
T PRK09485 227 LVTAAIAALRAVTDKPLVVYP---------NSGEVY--DAVTKTWHGPADDASLGELAPEWYAA--------------GA 281 (304)
T ss_pred HHHHHHHHHHhccCCcEEEEC---------CCCCCC--CCCCCcccCCCChHHHHHHHHHHHHc--------------CC
Confidence 66677777755 367777777 677763 1112211112233 456666666432 33
Q ss_pred ceEEeccccCccCcccccCchhHHHHHHHHHHHH
Q 005160 174 PIILSQIENEYEPEREEFGSAGEAYMKWAAEMAV 207 (711)
Q Consensus 174 pII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 207 (711)
.|| |. +|+ .+.+|++.|++.++
T Consensus 282 ~ii--------GG---CCG-ttP~hI~al~~~l~ 303 (304)
T PRK09485 282 RLI--------GG---CCR-TTPEDIAALAAALK 303 (304)
T ss_pred eEE--------ee---CCC-CCHHHHHHHHHHhh
Confidence 455 33 244 78899999998763
No 240
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=21.88 E-value=89 Score=34.62 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=43.7
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 52 RSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 52 r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
|.+...=.-..+.++++|.++|.+.|+|.-.++.+ -+-.-..+|.++.+.|+++||-+++.+
T Consensus 102 r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 102 RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 55444333346779999999999999998543310 001123489999999999999998874
No 241
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=21.82 E-value=1.7e+02 Score=35.00 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=44.6
Q ss_pred ecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEE
Q 005160 48 IHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHL 113 (711)
Q Consensus 48 ~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vil 113 (711)
+=|.|.|.+.-+..++++++.|+..|++....|.. +++...++.|+++|+.+..
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQG 142 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEEE
Confidence 45677788888899999999999999998766553 3788999999999998643
No 242
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism]
Probab=21.81 E-value=1.1e+02 Score=33.99 Aligned_cols=44 Identities=32% Similarity=0.717 Sum_probs=35.4
Q ss_pred CCCCCceeec-c---------cchHHHHH--HHHHHcCCEEEEecCcccccccCCCC
Q 005160 83 EPSPGNYNFE-G---------RYDLVRFI--KLVQKAGLYVHLRIGPYICAEWNFGG 127 (711)
Q Consensus 83 Ep~~G~ydF~-g---------~~dl~~fl--~la~~~GL~vilr~GPyicaEw~~GG 127 (711)
|..||||.|+ | +.+..+++ +.|++.|+.+-+-|=| +.+.|+..|
T Consensus 203 EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~~Gviasf~pKp-~~g~WngaG 258 (380)
T KOG0683|consen 203 EVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEKFGVIASFDPKP-ILGDWNGAG 258 (380)
T ss_pred cccCceeEEeecchhcccchhhHHHHHHHHHHHHHHhCeeEEecCCC-CCCcccCcc
Confidence 4789999995 3 24666665 7899999999999977 999999876
No 243
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.68 E-value=2.5e+02 Score=34.95 Aligned_cols=154 Identities=12% Similarity=0.149 Sum_probs=90.7
Q ss_pred CCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchH---HHHHHHHHHcCCEEEEecCcccccccCCCC--
Q 005160 53 SSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDL---VRFIKLVQKAGLYVHLRIGPYICAEWNFGG-- 127 (711)
Q Consensus 53 ~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl---~~fl~la~~~GL~vilr~GPyicaEw~~GG-- 127 (711)
++|..=..+.+..|..|++.+.+---=...-...| +|.|...+ ++.++..+|.||++=+.+=|-+-.-..-.|
T Consensus 330 ITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~g--ef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDV 407 (995)
T KOG0432|consen 330 ITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCG--EFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDV 407 (995)
T ss_pred ecCCCChhHHHHHHhcCCCceeEEcCCCceeccch--hccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCc
Confidence 45555556777889999998876322111112234 56666544 478899999999998777664322223333
Q ss_pred -----CCcEeeecCCeeec-----------cCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccCccccc
Q 005160 128 -----FPVWLKFVQGISFR-----------TDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPEREEF 191 (711)
Q Consensus 128 -----~P~WL~~~p~~~~R-----------~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~~~~~ 191 (711)
-|.|..+..+|.-| -.-+.+.+...+|+..+-+---.++|..+.-=|.-.|-++-+-+. ..++
T Consensus 408 IEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~e-e~~W 486 (995)
T KOG0432|consen 408 IEPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAE-EDYW 486 (995)
T ss_pred ccccccchheeehHHHHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccCCCc-ccee
Confidence 38888876655322 122456788889998887644333665554456655544333111 0001
Q ss_pred CchhHHHHHHHHHHHHHcC
Q 005160 192 GSAGEAYMKWAAEMAVELN 210 (711)
Q Consensus 192 ~~~~~~y~~~l~~~~~~~g 210 (711)
-.++.+-+++++++++.|
T Consensus 487 -vvarseeeA~ekaa~k~g 504 (995)
T KOG0432|consen 487 -VVARSEEEAREKAAEKFG 504 (995)
T ss_pred -EEeCCHHHHHHHHHHHhC
Confidence 135566777788887777
No 244
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=21.59 E-value=3.4e+02 Score=27.86 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=70.3
Q ss_pred HhHHHHHHHHHHHCCCC-EEEE--cccCCcCC---CCCCc--eeec-----------c--cchHHHHHHHHHHcCCEEEE
Q 005160 55 HEMWEGLIQKAKDGGLD-VIDT--YVFWNVHE---PSPGN--YNFE-----------G--RYDLVRFIKLVQKAGLYVHL 113 (711)
Q Consensus 55 ~~~W~~~l~k~Ka~G~N-tV~~--yv~Wn~hE---p~~G~--ydF~-----------g--~~dl~~fl~la~~~GL~vil 113 (711)
++.-.+.++++|+.|+. +|.| |+.|...+ |.-.. +|+- | +..+-+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 46678899999999987 4555 34442111 11111 2322 2 12444667778888988888
Q ss_pred ecCcccccccCCCCCCcEeeecCCeeeccCChhHHHHHHHHHHHHHHHhhhccccccCCCceEEe----ccccCccCccc
Q 005160 114 RIGPYICAEWNFGGFPVWLKFVQGISFRTDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPIILS----QIENEYEPERE 189 (711)
Q Consensus 114 r~GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~----QiENEyg~~~~ 189 (711)
|. |. +|++ ++++.-++++.+|++.+. +. ++..-.=.| ++. ++.=+|-..
T Consensus 133 R~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~--~~~llpyh~-~g~~Ky~~lg~~y~~~-- 185 (213)
T PRK10076 133 RL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK--QIHLLPFHQ-YGEPKYRLLGKTWSMK-- 185 (213)
T ss_pred EE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc--eEEEecCCc-cchhHHHHcCCcCccC--
Confidence 85 11 3553 245666677777766541 11 110000000 000 011122110
Q ss_pred ccCchhHHHHHHHHHHHHHcCCCc
Q 005160 190 EFGSAGEAYMKWAAEMAVELNTEV 213 (711)
Q Consensus 190 ~~~~~~~~y~~~l~~~~~~~g~~v 213 (711)
.......+.++++++.+++.|+.+
T Consensus 186 ~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 186 EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 122467889999999999988875
No 245
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=21.53 E-value=1.4e+02 Score=33.28 Aligned_cols=63 Identities=17% Similarity=0.320 Sum_probs=41.4
Q ss_pred HHHcCCEEEEecCcccccccCCCCCCcEeeecCC------eeec-cCChhHHHHHHHHHHHHHHHhhhccccccCCCceE
Q 005160 104 VQKAGLYVHLRIGPYICAEWNFGGFPVWLKFVQG------ISFR-TDNKPFKHAMQNFTQKIVLMMKDEKLFKSQGGPII 176 (711)
Q Consensus 104 a~~~GL~vilr~GPyicaEw~~GG~P~WL~~~p~------~~~R-~~d~~y~~~~~~~~~~l~~~~~~~~~~~~~gGpII 176 (711)
+-..|+.|+.-| |. .|+|....-. -+|| ...+.|.+...+|+.+ ++ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------Ws---pPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~~----m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------WS---PPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVLE----MK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------CC---CchhhhhccCcCCccccccchhHhHHHHHHHHHHHHH----HH------hCCCcee
Confidence 557899999887 65 7999965221 1344 3345565555555443 33 4567999
Q ss_pred EeccccCccC
Q 005160 177 LSQIENEYEP 186 (711)
Q Consensus 177 ~~QiENEyg~ 186 (711)
++.|-||...
T Consensus 171 alSVQNEPd~ 180 (433)
T COG5520 171 ALSVQNEPDY 180 (433)
T ss_pred EEeeccCCcc
Confidence 9999999865
No 246
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=21.43 E-value=2.2e+02 Score=30.22 Aligned_cols=60 Identities=20% Similarity=0.372 Sum_probs=36.6
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCc-eeec-ccchHHHHHHHHHHc-CCEEEEecCc
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGN-YNFE-GRYDLVRFIKLVQKA-GLYVHLRIGP 117 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~-ydF~-g~~dl~~fl~la~~~-GL~vilr~GP 117 (711)
.++.|.+..+.+.+.|+..|++ |..-|.... =++. ....+.++++..++. ++-|+++.+|
T Consensus 109 ~~~~~~~~a~~~~~~G~d~iel----N~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 109 SKEDYVELARKIERAGAKALEL----NLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEE----EcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 6678888888888888888888 444443221 0000 112555667766654 6666766553
No 247
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=21.38 E-value=1e+02 Score=32.45 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHCCCCEEEEcccCCcCCCC---CCceeecccchHHHHHHHHHHcCCEEEEecC
Q 005160 56 EMWEGLIQKAKDGGLDVIDTYVFWNVHEPS---PGNYNFEGRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 56 ~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~---~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 116 (711)
+.+++.++.++++|+.+|.+ |.-+.+. +..+.- -...+.++.++|+++|+.+.+.+-
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~---~~g~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVF---HPGSYLGQSKEEGLKR-VIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEE---CCCCCCCCCHHHHHHH-HHHHHHHHHHhccCCCCEEEEeCC
Confidence 45788899999999998765 3322221 111110 013677778888899999999973
No 248
>PLN02231 alanine transaminase
Probab=21.34 E-value=3.3e+02 Score=31.95 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=45.0
Q ss_pred CCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEe
Q 005160 51 PRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLR 114 (711)
Q Consensus 51 ~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr 114 (711)
+.+..+..++.++..+..|.++--+++. |-|-|.=-.++=+ .+.+++++|+++|+++|.-
T Consensus 251 ~~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls~e---~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 251 WGLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLAEE---NQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CCCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 4667788888887777777776555554 7677765556544 8999999999999998854
No 249
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=21.23 E-value=2.7e+02 Score=29.61 Aligned_cols=59 Identities=22% Similarity=0.315 Sum_probs=38.9
Q ss_pred CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCce--ee-cccchHHHHHHHHHHc-CCEEEEecC
Q 005160 54 SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNY--NF-EGRYDLVRFIKLVQKA-GLYVHLRIG 116 (711)
Q Consensus 54 ~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~y--dF-~g~~dl~~fl~la~~~-GL~vilr~G 116 (711)
.++.|.+..++++++|++.|++. ++-|..... ++ ...+.+.++++.+++. ++-|.++.+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN----~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~ 162 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELN----ISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT 162 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE----CCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 47889999999999999999995 444432111 12 1123566777777776 666666654
No 250
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=21.19 E-value=2e+02 Score=24.62 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=33.6
Q ss_pred EEEEecCCCCCcccCCCCCCeeeeCCcceEEEEEECCEEEEEEeCcccceeeEEEeeeeccCCccE-EEEEEec
Q 005160 452 CSTSVNISSSDSFLHGGERPTLSVQSRGHALHVFVNGQLTGSASGTRTYKRFTFRGNVNLHAGVNT-ISLLSIA 524 (711)
Q Consensus 452 Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~~~vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~~~-L~ILven 524 (711)
|+..++..... ..+........+.|.|||..+.... ....+.|..|.|. |.|-|.+
T Consensus 16 Y~~~V~~~~~~--------v~v~a~~~~~~a~v~vng~~~~~~~---------~~~~i~L~~G~n~~i~i~Vta 72 (88)
T PF12733_consen 16 YTVTVPNDVDS--------VTVTATPEDSGATVTVNGVPVNSGG---------YSATIPLNEGENTVITITVTA 72 (88)
T ss_pred EEEEECCCceE--------EEEEEEECCCCEEEEEcCEEccCCC---------cceeeEccCCCceEEEEEEEc
Confidence 77777654222 2344444467899999998654320 1123456678787 8888743
No 251
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.14 E-value=6e+02 Score=28.37 Aligned_cols=76 Identities=16% Similarity=0.254 Sum_probs=53.1
Q ss_pred cEEEC-CEEeEEEEEEecCCCC-CHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeeccc--chHHHHHHHHHHcC
Q 005160 33 ALIIN-GQRRILFSGSIHYPRS-SHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGR--YDLVRFIKLVQKAG 108 (711)
Q Consensus 33 ~f~~d-Gkp~~~~sg~~Hy~r~-~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~--~dl~~fl~la~~~G 108 (711)
...+. ++|+++++| +=-+ .++.-.+.-+.+|++|...++-+.|= |+-.-|.|.|. .-|..+-+.+++.|
T Consensus 93 ~v~iGg~~~l~vIAG---PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~k----pRtsp~sf~G~g~~gl~~L~~~~~e~G 165 (352)
T PRK13396 93 PVPFGENHPVVVVAG---PCSVENEEMIVETAKRVKAAGAKFLRGGAYK----PRTSPYAFQGHGESALELLAAAREATG 165 (352)
T ss_pred CeEecCCCeEEEEEe---CCcccCHHHHHHHHHHHHHcCCCEEEeeeec----CCCCCcccCCchHHHHHHHHHHHHHcC
Confidence 34554 567888988 3233 66777788889999999999976555 33333667643 45656667788999
Q ss_pred CEEEEec
Q 005160 109 LYVHLRI 115 (711)
Q Consensus 109 L~vilr~ 115 (711)
|.++-.+
T Consensus 166 l~~~tev 172 (352)
T PRK13396 166 LGIITEV 172 (352)
T ss_pred CcEEEee
Confidence 9988775
No 252
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=20.53 E-value=1.7e+02 Score=30.58 Aligned_cols=62 Identities=21% Similarity=0.359 Sum_probs=43.5
Q ss_pred EEEecCCCCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecC
Q 005160 45 SGSIHYPRSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIG 116 (711)
Q Consensus 45 sg~~Hy~r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~G 116 (711)
+|...--++...--++.|+.+|+.||++|++ .-|.-.-+ ..-..++|+.|.++|+.|.-..|
T Consensus 79 GGtlfe~a~~~~kvdeyl~e~~~lGfe~iEI---------S~G~i~m~-~eek~~lIe~a~d~Gf~vlsEvG 140 (258)
T COG1809 79 GGTLFEIAYSQDKVDEYLNEAKELGFEAIEI---------SNGTIPMS-TEEKCRLIERAVDEGFMVLSEVG 140 (258)
T ss_pred CceEEEeehhcccHHHHHHHHHHcCccEEEe---------cCCeeecc-hHHHHHHHHHHHhcccEEehhhc
Confidence 3333334556667788999999999999997 22332222 12567889999999999988776
No 253
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=20.43 E-value=81 Score=33.60 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=45.8
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEec
Q 005160 52 RSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 52 r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~ 115 (711)
|.|.-.=.-.-+++|+.|-++|-+-|.|..-|++-.+ ....-+++|...|..+||..+|.|
T Consensus 107 rlp~l~~~isa~riK~~G~~avK~Lvy~~~D~~e~ne---qk~a~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 107 RLPDLLRKISAKRIKEDGGDAVKFLVYYRSDEDEINE---QKLAYIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred cchhhhhhhCHHHHHHhcccceEEEEEEcCCchHHhH---HHHHHHHHHHHHhhhcCCceeEee
Confidence 4443222234568999999999999999999983222 122378899999999999999997
No 254
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=20.41 E-value=4.4e+02 Score=26.46 Aligned_cols=117 Identities=17% Similarity=0.374 Sum_probs=62.5
Q ss_pred CCCHhHHHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcE
Q 005160 52 RSSHEMWEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVW 131 (711)
Q Consensus 52 r~~~~~W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~W 131 (711)
|.-.++|++|+++=++---. .|..+|.- .||...|+.-.+.|--|++- | +=.|
T Consensus 35 ~a~D~Em~~RI~~Hr~rRp~------~W~tvE~~---------~~l~~~L~~~~~~~~~VLvD-----c-------Lt~w 87 (175)
T COG2087 35 RAFDDEMQERIAHHRARRPE------HWRTVEAP---------LDLATLLEALIEPGDVVLVD-----C-------LTLW 87 (175)
T ss_pred CCCCHHHHHHHHHHHhcCCC------cceEEecc---------ccHHHHHHhcccCCCEEEEE-----c-------HHHH
Confidence 34467899999887764322 26666543 38889998877776666544 1 3356
Q ss_pred eeecCCeeeccCChhH--HHHHHHHHHHHHHHhhhccccccCCCceEEeccccCccCc-ccccCchhHHHHHHHHHHHHH
Q 005160 132 LKFVQGISFRTDNKPF--KHAMQNFTQKIVLMMKDEKLFKSQGGPIILSQIENEYEPE-REEFGSAGEAYMKWAAEMAVE 208 (711)
Q Consensus 132 L~~~p~~~~R~~d~~y--~~~~~~~~~~l~~~~~~~~~~~~~gGpII~~QiENEyg~~-~~~~~~~~~~y~~~l~~~~~~ 208 (711)
|.+- -+. +...| -++++.-++++..-+.. .. +++|+| -||.|.- ...+ .-++.|...+-.+-++
T Consensus 88 vtNl---l~~-~e~~~~~~~~~~~~~~~L~~al~~-----~~-~~~ilV--sNEvG~GiVPe~-~l~R~fRD~~G~lnQ~ 154 (175)
T COG2087 88 VTNL---LFA-GEKDWSAEAAIEAEIEALLAALSR-----AP-GTVVLV--SNEVGLGIVPEY-RLGRLFRDIAGRLNQQ 154 (175)
T ss_pred HHHH---Hhc-cccccchhhhHHHHHHHHHHHHhc-----CC-ccEEEE--ecCccCCcCcCc-hhhHHHHHHHhHHHHH
Confidence 6541 111 11111 23344444444444441 11 478875 6999851 1111 2456666655544443
No 255
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=20.21 E-value=3.9e+02 Score=29.26 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=43.6
Q ss_pred HHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHHHHHHHHHHcCCEEEEecCcccccccCCCCCCcEeee
Q 005160 59 EGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVRFIKLVQKAGLYVHLRIGPYICAEWNFGGFPVWLKF 134 (711)
Q Consensus 59 ~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~~fl~la~~~GL~vilr~GPyicaEw~~GG~P~WL~~ 134 (711)
...+...++.|.+||=. +.+ =.=.||+.++.+.+++.||.++...|+|.-+.|+ .|+..
T Consensus 51 ~~e~~~~~a~Gg~TIVD--------~T~----~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~ 109 (316)
T COG1735 51 IAELKRLMARGGQTIVD--------ATN----IGIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFAL 109 (316)
T ss_pred HHHHHHHHHcCCCeEee--------CCc----cccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhh
Confidence 34566777789888854 111 0112699999999999999999999999987775 66643
No 256
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=20.02 E-value=2.3e+02 Score=29.22 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=28.1
Q ss_pred HHHHHHHHHHCCCCEEEEcccCCcCCCCCCceeecccchHH---HHHHHHHHcCCEEEEec
Q 005160 58 WEGLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLV---RFIKLVQKAGLYVHLRI 115 (711)
Q Consensus 58 W~~~l~k~Ka~G~NtV~~yv~Wn~hEp~~G~ydF~g~~dl~---~fl~la~~~GL~vilr~ 115 (711)
-+..+.++|+||.+.|-.| --.|.+.++ ..-+.|.++|+++ .|
T Consensus 137 vetAiaml~dmG~~SiKff-------------Pm~Gl~~leE~~avAkA~a~~g~~l--EP 182 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFF-------------PMGGLKHLEELKAVAKACARNGFTL--EP 182 (218)
T ss_dssp HHHHHHHHHHTT--EEEE----------------TTTTTHHHHHHHHHHHHHCT-EE--EE
T ss_pred HHHHHHHHHHcCCCeeeEe-------------ecCCcccHHHHHHHHHHHHHcCcee--CC
Confidence 4678999999999999873 223444444 4557788999988 87
Done!