Query 005161
Match_columns 711
No_of_seqs 644 out of 2973
Neff 12.1
Searched_HMMs 46136
Date Thu Mar 28 19:03:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 8.5E-84 1.8E-88 697.0 75.2 675 10-711 46-724 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 3.7E-81 8E-86 676.5 68.5 650 1-678 73-726 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.9E-68 4E-73 563.0 69.2 549 46-644 366-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.7E-67 3.7E-72 555.7 68.7 542 117-711 368-913 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 6.4E-61 1.4E-65 506.2 55.2 511 84-644 87-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 6.1E-61 1.3E-65 506.4 53.0 473 187-710 85-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.7E-43 1E-47 392.7 86.9 675 15-708 159-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-42 2.3E-47 389.8 85.6 672 13-705 191-898 (899)
9 PRK11447 cellulose synthase su 100.0 6.2E-31 1.3E-35 292.1 77.6 655 18-705 31-738 (1157)
10 PRK11447 cellulose synthase su 100.0 2.4E-29 5.2E-34 279.4 72.2 619 14-676 61-745 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 4E-26 8.7E-31 241.0 74.9 650 17-708 44-741 (987)
12 PRK09782 bacteriophage N4 rece 100.0 2.3E-25 5E-30 235.3 69.6 608 61-708 55-707 (987)
13 KOG2002 TPR-containing nuclear 100.0 5.7E-24 1.2E-28 209.2 57.5 562 31-602 146-745 (1018)
14 KOG2002 TPR-containing nuclear 100.0 6.3E-23 1.4E-27 201.9 62.8 681 15-709 41-800 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 2.2E-23 4.7E-28 194.6 38.2 434 238-689 62-501 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 1.1E-22 2.3E-27 190.0 35.7 433 19-466 52-488 (966)
17 KOG0495 HAT repeat protein [RN 99.9 5.2E-18 1.1E-22 160.0 63.3 610 64-708 265-881 (913)
18 KOG2076 RNA polymerase III tra 99.9 4.8E-18 1E-22 166.9 59.4 673 13-703 137-891 (895)
19 TIGR00990 3a0801s09 mitochondr 99.9 3E-19 6.5E-24 186.8 49.6 360 18-391 130-495 (615)
20 PRK15174 Vi polysaccharide exp 99.9 8.3E-20 1.8E-24 189.7 43.6 361 56-424 48-417 (656)
21 TIGR00990 3a0801s09 mitochondr 99.9 5.2E-19 1.1E-23 185.0 49.6 428 226-671 129-570 (615)
22 PRK15174 Vi polysaccharide exp 99.9 2.4E-19 5.2E-24 186.3 45.9 334 18-358 45-382 (656)
23 PRK11788 tetratricopeptide rep 99.9 2E-20 4.2E-25 186.3 35.1 304 370-679 42-354 (389)
24 KOG0495 HAT repeat protein [RN 99.9 6.4E-16 1.4E-20 146.2 61.2 578 98-709 265-848 (913)
25 PRK10049 pgaA outer membrane p 99.9 1.9E-18 4.2E-23 183.8 50.5 410 10-428 10-457 (765)
26 KOG2076 RNA polymerase III tra 99.9 1.4E-16 3.1E-21 156.7 57.8 640 56-709 145-851 (895)
27 PRK11788 tetratricopeptide rep 99.9 6.6E-20 1.4E-24 182.5 35.7 311 335-659 42-363 (389)
28 PRK10049 pgaA outer membrane p 99.9 8.6E-19 1.9E-23 186.5 45.4 415 259-688 16-470 (765)
29 PRK14574 hmsH outer membrane p 99.9 1.2E-16 2.7E-21 166.1 53.6 448 200-685 45-524 (822)
30 PRK14574 hmsH outer membrane p 99.9 1.5E-16 3.3E-21 165.4 51.8 450 59-538 43-518 (822)
31 KOG1915 Cell cycle control pro 99.8 2E-14 4.3E-19 131.0 50.1 448 49-534 72-537 (677)
32 KOG2003 TPR repeat-containing 99.8 2E-16 4.2E-21 143.0 36.5 496 86-658 203-709 (840)
33 KOG1915 Cell cycle control pro 99.8 3.6E-14 7.8E-19 129.4 50.3 488 72-601 61-584 (677)
34 KOG2003 TPR repeat-containing 99.8 6.7E-16 1.5E-20 139.6 37.8 280 406-693 427-709 (840)
35 KOG4422 Uncharacterized conser 99.8 2E-15 4.3E-20 135.6 40.2 461 15-526 116-618 (625)
36 KOG4318 Bicoid mRNA stability 99.8 6.1E-14 1.3E-18 137.8 49.2 663 7-692 17-828 (1088)
37 KOG4422 Uncharacterized conser 99.8 1.7E-13 3.7E-18 123.4 44.9 389 292-702 206-620 (625)
38 KOG0547 Translocase of outer m 99.7 7.4E-14 1.6E-18 128.0 31.5 422 192-671 118-565 (606)
39 KOG2047 mRNA splicing factor [ 99.7 3.8E-10 8.2E-15 107.7 56.8 562 50-658 102-709 (835)
40 KOG2047 mRNA splicing factor [ 99.7 8.7E-10 1.9E-14 105.3 59.6 312 376-695 360-711 (835)
41 KOG1155 Anaphase-promoting com 99.7 9.3E-12 2E-16 113.8 41.0 294 371-671 235-535 (559)
42 KOG0547 Translocase of outer m 99.7 5.1E-13 1.1E-17 122.6 32.5 417 18-460 118-563 (606)
43 KOG4318 Bicoid mRNA stability 99.7 6E-13 1.3E-17 131.0 35.1 553 105-709 11-596 (1088)
44 KOG1156 N-terminal acetyltrans 99.7 3.3E-10 7.1E-15 108.5 51.2 462 27-532 19-510 (700)
45 TIGR00540 hemY_coli hemY prote 99.7 2.4E-13 5.3E-18 134.2 32.2 289 62-353 96-395 (409)
46 KOG3785 Uncharacterized conser 99.7 5.9E-11 1.3E-15 104.6 41.0 256 380-657 271-535 (557)
47 KOG3785 Uncharacterized conser 99.7 1.7E-11 3.8E-16 107.9 37.6 456 126-646 29-497 (557)
48 TIGR00540 hemY_coli hemY prote 99.6 5.3E-13 1.1E-17 131.8 31.3 297 17-319 84-396 (409)
49 PF13429 TPR_15: Tetratricopep 99.6 1.3E-15 2.8E-20 142.8 12.3 260 20-284 13-274 (280)
50 PRK10747 putative protoheme IX 99.6 9.4E-13 2E-17 129.2 32.1 221 163-391 162-389 (398)
51 COG2956 Predicted N-acetylgluc 99.6 9.8E-13 2.1E-17 114.3 28.0 289 97-425 48-345 (389)
52 PRK10747 putative protoheme IX 99.6 1.7E-12 3.6E-17 127.5 32.6 285 63-355 97-388 (398)
53 PF13429 TPR_15: Tetratricopep 99.6 2.7E-15 6E-20 140.7 12.6 160 541-704 113-274 (280)
54 KOG1173 Anaphase-promoting com 99.6 4.5E-11 9.9E-16 112.3 39.2 286 396-689 242-533 (611)
55 KOG1173 Anaphase-promoting com 99.6 6.2E-11 1.3E-15 111.5 40.0 286 360-653 241-532 (611)
56 KOG1126 DNA-binding cell divis 99.6 2.8E-13 6.2E-18 129.6 24.2 289 65-361 334-624 (638)
57 KOG1155 Anaphase-promoting com 99.6 2.1E-11 4.6E-16 111.5 34.4 292 404-703 233-532 (559)
58 COG2956 Predicted N-acetylgluc 99.6 5.5E-12 1.2E-16 109.7 27.5 290 63-392 48-347 (389)
59 KOG1126 DNA-binding cell divis 99.6 6E-13 1.3E-17 127.5 23.6 287 99-396 334-624 (638)
60 KOG1156 N-terminal acetyltrans 99.6 1.6E-09 3.5E-14 103.9 46.0 462 157-635 11-509 (700)
61 COG3071 HemY Uncharacterized e 99.6 1.6E-10 3.5E-15 104.2 35.1 294 63-392 97-390 (400)
62 KOG1127 TPR repeat-containing 99.5 6.5E-09 1.4E-13 104.6 48.0 364 311-685 801-1187(1238)
63 COG3071 HemY Uncharacterized e 99.5 9.4E-11 2E-15 105.7 31.6 286 375-670 96-388 (400)
64 KOG1174 Anaphase-promoting com 99.5 1.2E-09 2.5E-14 98.8 37.9 293 410-710 208-503 (564)
65 KOG4162 Predicted calmodulin-b 99.5 5.2E-09 1.1E-13 102.6 45.0 481 201-707 239-783 (799)
66 KOG3616 Selective LIM binding 99.5 9.1E-09 2E-13 100.0 45.2 551 24-671 453-1023(1636)
67 PF12569 NARP1: NMDA receptor- 99.5 2.1E-09 4.5E-14 106.3 41.1 98 226-324 196-293 (517)
68 KOG4162 Predicted calmodulin-b 99.5 2.2E-08 4.8E-13 98.4 46.9 443 149-636 318-782 (799)
69 KOG0985 Vesicle coat protein c 99.5 1.3E-07 2.7E-12 95.6 55.3 245 21-282 487-748 (1666)
70 KOG1127 TPR repeat-containing 99.5 7E-09 1.5E-13 104.4 42.2 133 14-147 525-658 (1238)
71 KOG2376 Signal recognition par 99.5 4.3E-09 9.4E-14 99.9 38.4 146 413-562 356-515 (652)
72 PRK12370 invasion protein regu 99.5 3.2E-11 6.9E-16 124.0 27.2 217 64-285 275-500 (553)
73 KOG3617 WD40 and TPR repeat-co 99.5 1.3E-08 2.8E-13 100.3 42.7 240 48-319 724-993 (1416)
74 KOG1129 TPR repeat-containing 99.5 2.4E-11 5.2E-16 105.9 21.7 235 435-677 224-461 (478)
75 PRK12370 invasion protein regu 99.5 5.2E-11 1.1E-15 122.4 28.6 234 13-253 254-502 (553)
76 KOG3617 WD40 and TPR repeat-co 99.5 9.1E-09 2E-13 101.3 40.8 210 14-250 756-993 (1416)
77 KOG0985 Vesicle coat protein c 99.4 3.3E-07 7.1E-12 92.8 54.9 86 607-700 1103-1188(1666)
78 KOG2376 Signal recognition par 99.4 2.8E-08 6.2E-13 94.5 41.4 474 56-599 18-517 (652)
79 PF12569 NARP1: NMDA receptor- 99.4 4.9E-09 1.1E-13 103.7 38.4 299 196-533 11-334 (517)
80 TIGR02521 type_IV_pilW type IV 99.4 1.2E-10 2.6E-15 107.3 26.0 202 49-253 30-232 (234)
81 TIGR02521 type_IV_pilW type IV 99.4 1.2E-10 2.6E-15 107.2 25.9 200 15-217 31-231 (234)
82 KOG1129 TPR repeat-containing 99.4 5.2E-11 1.1E-15 103.8 19.7 232 471-708 225-459 (478)
83 KOG1174 Anaphase-promoting com 99.4 2.4E-09 5.1E-14 96.8 30.5 293 27-325 208-503 (564)
84 KOG3616 Selective LIM binding 99.4 1.2E-07 2.6E-12 92.6 42.7 170 264-459 738-907 (1636)
85 COG3063 PilF Tfp pilus assembl 99.4 1E-09 2.2E-14 91.4 24.0 204 52-258 37-241 (250)
86 KOG4340 Uncharacterized conser 99.4 7.3E-09 1.6E-13 89.5 29.9 205 9-221 4-210 (459)
87 KOG4340 Uncharacterized conser 99.3 4.7E-09 1E-13 90.6 27.1 293 194-494 15-335 (459)
88 COG3063 PilF Tfp pilus assembl 99.3 1.8E-09 3.9E-14 90.0 23.7 205 17-226 37-242 (250)
89 KOG0548 Molecular co-chaperone 99.3 4.3E-08 9.3E-13 92.4 32.5 396 23-464 10-456 (539)
90 KOG0548 Molecular co-chaperone 99.3 1.2E-08 2.5E-13 96.2 28.0 103 163-268 11-114 (539)
91 KOG1840 Kinesin light chain [C 99.3 3.8E-09 8.3E-14 103.0 25.2 235 471-705 201-477 (508)
92 PRK11189 lipoprotein NlpI; Pro 99.3 7.9E-09 1.7E-13 97.0 26.8 220 28-255 39-267 (296)
93 KOG1840 Kinesin light chain [C 99.2 6.8E-09 1.5E-13 101.3 25.7 241 51-319 200-476 (508)
94 PRK11189 lipoprotein NlpI; Pro 99.2 1.7E-08 3.6E-13 94.8 26.9 197 16-220 65-267 (296)
95 PF13041 PPR_2: PPR repeat fam 99.2 4.3E-11 9.3E-16 77.2 6.6 50 606-655 1-50 (50)
96 PF13041 PPR_2: PPR repeat fam 99.2 4.8E-11 1E-15 77.0 6.3 49 187-235 1-49 (50)
97 cd05804 StaR_like StaR_like; a 99.1 4.8E-07 1.1E-11 89.0 34.2 201 506-707 116-336 (355)
98 KOG1125 TPR repeat-containing 99.1 2.2E-08 4.7E-13 95.2 20.7 220 60-285 295-525 (579)
99 cd05804 StaR_like StaR_like; a 99.1 8.8E-07 1.9E-11 87.1 33.1 55 162-217 122-176 (355)
100 KOG0624 dsRNA-activated protei 99.1 1.8E-06 4E-11 76.7 30.4 298 56-358 44-371 (504)
101 KOG0624 dsRNA-activated protei 99.1 2E-06 4.3E-11 76.5 30.2 313 86-427 40-370 (504)
102 KOG1125 TPR repeat-containing 99.1 3.3E-08 7.2E-13 94.0 20.3 222 23-253 293-527 (579)
103 KOG2053 Mitochondrial inherita 99.0 3.5E-05 7.6E-10 78.0 51.7 162 506-670 438-606 (932)
104 PLN02789 farnesyltranstransfer 99.0 1.3E-06 2.9E-11 81.7 27.0 215 17-236 39-267 (320)
105 PF04733 Coatomer_E: Coatomer 98.9 6.2E-08 1.3E-12 89.3 17.0 82 240-322 183-265 (290)
106 PLN02789 farnesyltranstransfer 98.9 1.3E-06 2.9E-11 81.7 25.5 213 54-270 41-267 (320)
107 PRK04841 transcriptional regul 98.9 1.3E-05 2.9E-10 89.8 38.3 375 295-671 343-759 (903)
108 KOG2053 Mitochondrial inherita 98.9 0.00012 2.6E-09 74.4 48.4 226 26-257 20-259 (932)
109 PF04733 Coatomer_E: Coatomer 98.9 1.8E-07 4E-12 86.2 19.3 81 273-355 182-263 (290)
110 PRK04841 transcriptional regul 98.9 2E-05 4.4E-10 88.3 39.6 377 259-637 342-760 (903)
111 KOG1128 Uncharacterized conser 98.9 5.8E-07 1.3E-11 88.2 22.8 208 476-704 405-613 (777)
112 KOG1070 rRNA processing protei 98.9 2.9E-06 6.3E-11 89.4 27.5 226 434-663 1458-1691(1710)
113 KOG1914 mRNA cleavage and poly 98.8 0.00014 2.9E-09 69.5 43.4 174 450-625 347-527 (656)
114 KOG1914 mRNA cleavage and poly 98.8 0.00015 3.2E-09 69.2 39.1 186 309-497 309-500 (656)
115 COG5010 TadD Flp pilus assembl 98.8 1.2E-06 2.6E-11 75.3 18.8 159 508-669 70-228 (257)
116 KOG1070 rRNA processing protei 98.8 3.2E-06 6.8E-11 89.1 25.2 204 118-326 1457-1667(1710)
117 TIGR03302 OM_YfiO outer membra 98.8 1.3E-06 2.8E-11 79.8 20.4 184 15-218 33-232 (235)
118 KOG1128 Uncharacterized conser 98.8 1.6E-06 3.5E-11 85.2 20.5 222 394-636 394-615 (777)
119 TIGR03302 OM_YfiO outer membra 98.7 1.8E-06 4E-11 78.9 20.1 189 48-255 31-234 (235)
120 PRK10370 formate-dependent nit 98.7 3.1E-06 6.7E-11 73.7 19.9 150 22-185 23-175 (198)
121 COG5010 TadD Flp pilus assembl 98.7 3.2E-06 6.9E-11 72.8 19.1 159 54-215 70-228 (257)
122 PRK14720 transcript cleavage f 98.7 0.00057 1.2E-08 72.1 38.8 220 48-304 29-268 (906)
123 PRK10370 formate-dependent nit 98.7 1.2E-06 2.6E-11 76.2 16.0 128 28-158 52-182 (198)
124 PRK15179 Vi polysaccharide bio 98.7 1.3E-05 2.8E-10 83.3 25.1 132 49-182 85-216 (694)
125 PRK15359 type III secretion sy 98.7 2.7E-06 5.9E-11 69.8 16.4 120 34-159 12-131 (144)
126 PRK15179 Vi polysaccharide bio 98.6 4.9E-06 1.1E-10 86.3 21.6 204 12-231 25-229 (694)
127 KOG3060 Uncharacterized conser 98.6 4.4E-05 9.5E-10 65.3 23.0 186 448-636 26-219 (289)
128 PRK15359 type III secretion sy 98.6 2.1E-06 4.5E-11 70.5 14.5 106 17-124 26-131 (144)
129 PRK14720 transcript cleavage f 98.6 2E-05 4.4E-10 82.6 24.6 220 13-269 29-268 (906)
130 PF12854 PPR_1: PPR repeat 98.6 7.7E-08 1.7E-12 55.2 3.8 32 184-215 2-33 (34)
131 KOG3081 Vesicle coat complex C 98.6 7.2E-05 1.6E-09 64.6 22.3 154 402-566 112-270 (299)
132 KOG3060 Uncharacterized conser 98.6 9.3E-05 2E-09 63.4 22.8 189 28-219 25-221 (289)
133 KOG3081 Vesicle coat complex C 98.5 6.3E-05 1.4E-09 65.0 21.6 139 125-273 114-256 (299)
134 COG4783 Putative Zn-dependent 98.5 8.1E-05 1.7E-09 70.4 24.2 148 513-681 315-462 (484)
135 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3E-12 54.1 3.9 32 10-41 2-33 (34)
136 TIGR02552 LcrH_SycD type III s 98.5 7.5E-06 1.6E-10 67.2 14.5 97 51-148 18-114 (135)
137 COG4783 Putative Zn-dependent 98.5 9.2E-05 2E-09 70.0 22.4 138 61-218 317-454 (484)
138 TIGR02552 LcrH_SycD type III s 98.4 1.2E-05 2.6E-10 66.0 14.4 112 71-184 4-115 (135)
139 PF09976 TPR_21: Tetratricopep 98.3 5E-05 1.1E-09 62.8 15.5 115 63-179 24-143 (145)
140 PF09976 TPR_21: Tetratricopep 98.3 5.5E-05 1.2E-09 62.5 15.3 126 16-144 13-143 (145)
141 PRK15363 pathogenicity island 98.2 9.1E-05 2E-09 59.5 14.7 98 50-148 35-132 (157)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 7.6E-05 1.6E-09 71.5 15.9 129 84-218 169-297 (395)
143 KOG2041 WD40 repeat protein [G 98.2 0.0056 1.2E-07 60.7 27.9 156 306-494 747-903 (1189)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 8E-05 1.7E-09 71.3 15.1 130 49-183 168-297 (395)
145 KOG0550 Molecular chaperone (D 98.1 0.0018 3.8E-08 60.1 21.6 263 20-288 54-351 (486)
146 COG5107 RNA14 Pre-mRNA 3'-end 98.1 0.01 2.2E-07 55.9 34.3 147 469-619 397-546 (660)
147 PF07079 DUF1347: Protein of u 98.1 0.011 2.3E-07 55.9 41.5 268 432-705 221-522 (549)
148 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00022 4.8E-09 56.9 13.9 94 55-148 7-105 (119)
149 COG4700 Uncharacterized protei 98.0 0.00073 1.6E-08 55.0 15.7 155 20-178 61-217 (251)
150 KOG0550 Molecular chaperone (D 98.0 0.00057 1.2E-08 63.2 16.7 89 582-672 258-350 (486)
151 KOG2041 WD40 repeat protein [G 98.0 0.015 3.3E-07 57.8 26.9 178 47-247 689-875 (1189)
152 TIGR00756 PPR pentatricopeptid 98.0 1.4E-05 3.1E-10 46.9 4.4 33 191-223 2-34 (35)
153 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00029 6.4E-09 56.2 13.5 101 16-116 3-108 (119)
154 cd00189 TPR Tetratricopeptide 98.0 0.00014 3.1E-09 55.4 11.1 89 21-110 6-94 (100)
155 PRK10866 outer membrane biogen 98.0 0.0031 6.8E-08 57.0 20.9 74 55-128 37-113 (243)
156 TIGR00756 PPR pentatricopeptid 97.9 1.6E-05 3.4E-10 46.7 4.2 32 646-677 3-34 (35)
157 cd00189 TPR Tetratricopeptide 97.9 0.00017 3.7E-09 55.0 11.2 93 54-147 4-96 (100)
158 PF12895 Apc3: Anaphase-promot 97.9 2E-05 4.3E-10 57.8 5.4 80 63-144 2-83 (84)
159 PLN03088 SGT1, suppressor of 97.9 0.00034 7.3E-09 67.6 15.2 92 22-114 9-100 (356)
160 PF13812 PPR_3: Pentatricopept 97.9 2.1E-05 4.6E-10 45.7 4.3 32 680-711 3-34 (34)
161 PF13812 PPR_3: Pentatricopept 97.9 2.2E-05 4.9E-10 45.6 4.2 33 190-222 2-34 (34)
162 KOG0553 TPR repeat-containing 97.9 0.00082 1.8E-08 59.7 15.3 86 26-112 92-177 (304)
163 PF12688 TPR_5: Tetratrico pep 97.9 0.0011 2.3E-08 51.6 14.1 106 21-130 7-117 (120)
164 PRK15363 pathogenicity island 97.9 0.00039 8.4E-09 56.0 11.7 99 14-113 34-132 (157)
165 PRK02603 photosystem I assembl 97.9 0.00059 1.3E-08 58.4 13.9 112 53-169 38-166 (172)
166 KOG0553 TPR repeat-containing 97.9 0.00024 5.2E-09 62.9 11.3 98 546-648 89-187 (304)
167 PRK10866 outer membrane biogen 97.8 0.0098 2.1E-07 53.8 21.8 68 84-151 32-101 (243)
168 PF07079 DUF1347: Protein of u 97.8 0.031 6.8E-07 52.9 45.4 135 61-199 17-177 (549)
169 COG4700 Uncharacterized protei 97.8 0.0067 1.5E-07 49.6 17.9 131 536-670 87-220 (251)
170 PF12895 Apc3: Anaphase-promot 97.8 7E-05 1.5E-09 54.9 6.4 81 28-109 2-83 (84)
171 PLN03088 SGT1, suppressor of 97.8 0.00066 1.4E-08 65.6 14.7 92 57-149 9-100 (356)
172 PF05843 Suf: Suppressor of fo 97.8 0.00075 1.6E-08 62.8 14.3 129 471-601 3-135 (280)
173 PF10037 MRP-S27: Mitochondria 97.8 0.00083 1.8E-08 64.8 14.3 120 118-237 65-186 (429)
174 PRK10153 DNA-binding transcrip 97.7 0.0021 4.6E-08 65.0 17.8 73 605-681 417-489 (517)
175 PF10037 MRP-S27: Mitochondria 97.7 0.00079 1.7E-08 65.0 13.6 124 498-621 60-186 (429)
176 COG3898 Uncharacterized membra 97.7 0.04 8.6E-07 51.1 31.9 294 86-392 84-392 (531)
177 CHL00033 ycf3 photosystem I as 97.7 0.0013 2.8E-08 56.1 13.9 97 51-148 36-149 (168)
178 PF05843 Suf: Suppressor of fo 97.7 0.00083 1.8E-08 62.4 13.4 78 137-217 54-135 (280)
179 PF13525 YfiO: Outer membrane 97.7 0.0069 1.5E-07 53.4 18.4 59 57-115 12-73 (203)
180 CHL00033 ycf3 photosystem I as 97.7 0.00091 2E-08 57.1 12.4 111 68-179 17-138 (168)
181 PF14559 TPR_19: Tetratricopep 97.7 0.00017 3.7E-09 50.3 6.5 53 62-114 3-55 (68)
182 PRK02603 photosystem I assembl 97.7 0.0026 5.6E-08 54.5 14.9 115 84-203 35-165 (172)
183 PF13432 TPR_16: Tetratricopep 97.7 0.0002 4.2E-09 49.4 6.6 58 57-114 4-61 (65)
184 PF13414 TPR_11: TPR repeat; P 97.7 0.00025 5.4E-09 49.7 7.1 65 49-113 2-67 (69)
185 COG4235 Cytochrome c biogenesi 97.6 0.0035 7.5E-08 56.2 15.3 131 65-199 137-270 (287)
186 KOG2796 Uncharacterized conser 97.6 0.038 8.2E-07 48.2 20.7 223 51-288 70-316 (366)
187 PF01535 PPR: PPR repeat; Int 97.6 8.9E-05 1.9E-09 41.9 3.7 30 680-709 2-31 (31)
188 PF14938 SNAP: Soluble NSF att 97.6 0.0046 1E-07 57.9 17.1 133 15-148 35-184 (282)
189 PF08579 RPM2: Mitochondrial r 97.6 0.00089 1.9E-08 49.7 9.4 77 124-200 30-115 (120)
190 PF12688 TPR_5: Tetratrico pep 97.6 0.0033 7.2E-08 48.9 13.0 90 196-285 8-102 (120)
191 PF08579 RPM2: Mitochondrial r 97.6 0.0014 3E-08 48.7 10.2 78 613-690 30-116 (120)
192 COG4235 Cytochrome c biogenesi 97.6 0.0062 1.3E-07 54.7 16.3 116 101-219 139-257 (287)
193 PF13525 YfiO: Outer membrane 97.6 0.013 2.9E-07 51.6 18.5 156 84-258 5-175 (203)
194 PF01535 PPR: PPR repeat; Int 97.6 0.00011 2.4E-09 41.5 3.6 29 191-219 2-30 (31)
195 PRK10153 DNA-binding transcrip 97.6 0.0058 1.3E-07 61.9 18.0 144 500-647 333-490 (517)
196 PF14938 SNAP: Soluble NSF att 97.6 0.0095 2E-07 55.8 18.2 100 156-255 116-227 (282)
197 PF13414 TPR_11: TPR repeat; P 97.5 0.00036 7.8E-09 48.8 6.7 59 610-670 5-65 (69)
198 PF14559 TPR_19: Tetratricopep 97.5 0.00031 6.7E-09 49.0 6.1 64 25-89 1-64 (68)
199 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.092 2E-06 49.8 37.1 142 38-182 31-189 (660)
200 PF13432 TPR_16: Tetratricopep 97.4 0.00073 1.6E-08 46.5 6.9 62 21-83 3-64 (65)
201 KOG1130 Predicted G-alpha GTPa 97.4 0.0012 2.6E-08 61.0 9.8 234 15-249 15-300 (639)
202 PF06239 ECSIT: Evolutionarily 97.4 0.0059 1.3E-07 51.9 12.8 104 117-239 45-153 (228)
203 PRK10803 tol-pal system protei 97.4 0.0046 1E-07 56.3 13.2 97 52-148 145-246 (263)
204 KOG1130 Predicted G-alpha GTPa 97.4 0.0025 5.3E-08 59.0 11.1 52 406-457 25-78 (639)
205 PRK10803 tol-pal system protei 97.3 0.0061 1.3E-07 55.5 13.3 102 15-116 143-249 (263)
206 PF06239 ECSIT: Evolutionarily 97.3 0.0084 1.8E-07 51.0 12.7 105 152-275 45-155 (228)
207 KOG1258 mRNA processing protei 97.3 0.24 5.1E-06 49.3 34.1 119 237-356 58-179 (577)
208 PRK15331 chaperone protein Sic 97.3 0.014 3E-07 47.5 13.2 89 59-148 46-134 (165)
209 COG3898 Uncharacterized membra 97.3 0.17 3.6E-06 47.2 30.2 151 519-677 244-397 (531)
210 PF13371 TPR_9: Tetratricopept 97.2 0.0022 4.9E-08 45.4 7.8 57 58-114 3-59 (73)
211 PRK15331 chaperone protein Sic 97.2 0.0036 7.8E-08 50.8 9.1 94 87-182 40-133 (165)
212 KOG2796 Uncharacterized conser 97.1 0.16 3.5E-06 44.5 22.7 140 540-682 179-323 (366)
213 PF03704 BTAD: Bacterial trans 97.1 0.024 5.3E-07 46.9 13.9 96 14-109 2-121 (146)
214 KOG1538 Uncharacterized conser 97.1 0.12 2.7E-06 51.3 19.9 91 536-637 745-846 (1081)
215 PF13281 DUF4071: Domain of un 97.1 0.093 2E-06 49.9 18.6 163 507-671 144-333 (374)
216 PF13371 TPR_9: Tetratricopept 97.1 0.0045 9.7E-08 43.8 7.9 64 22-86 2-65 (73)
217 KOG1258 mRNA processing protei 97.0 0.47 1E-05 47.3 37.4 98 329-427 298-395 (577)
218 PF04840 Vps16_C: Vps16, C-ter 97.0 0.34 7.5E-06 45.8 28.2 111 506-635 179-289 (319)
219 KOG2114 Vacuolar assembly/sort 96.9 0.64 1.4E-05 48.3 25.1 109 124-244 339-451 (933)
220 COG3118 Thioredoxin domain-con 96.9 0.18 3.9E-06 45.5 17.5 142 60-203 144-286 (304)
221 COG4105 ComL DNA uptake lipopr 96.8 0.31 6.8E-06 43.1 19.8 53 62-114 46-101 (254)
222 KOG1538 Uncharacterized conser 96.8 0.26 5.6E-06 49.2 19.2 87 610-707 749-846 (1081)
223 PF13424 TPR_12: Tetratricopep 96.8 0.0026 5.6E-08 45.8 4.8 62 644-705 6-73 (78)
224 KOG2114 Vacuolar assembly/sort 96.8 0.86 1.9E-05 47.4 26.7 46 404-454 711-756 (933)
225 COG1729 Uncharacterized protei 96.8 0.044 9.6E-07 48.7 12.9 96 52-148 144-244 (262)
226 KOG2280 Vacuolar assembly/sort 96.7 0.84 1.8E-05 46.8 28.4 114 323-456 679-792 (829)
227 PF13281 DUF4071: Domain of un 96.7 0.56 1.2E-05 44.8 20.4 168 468-637 140-334 (374)
228 KOG4555 TPR repeat-containing 96.7 0.073 1.6E-06 40.9 11.6 92 58-149 51-145 (175)
229 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.019 4.1E-07 55.2 10.5 66 570-637 72-141 (453)
230 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.047 1E-06 52.6 13.1 66 48-113 73-141 (453)
231 COG4105 ComL DNA uptake lipopr 96.5 0.52 1.1E-05 41.8 21.3 82 84-165 34-117 (254)
232 COG4649 Uncharacterized protei 96.5 0.21 4.6E-06 40.7 13.7 122 61-182 69-195 (221)
233 COG4785 NlpI Lipoprotein NlpI, 96.4 0.5 1.1E-05 40.3 16.9 182 63-254 78-267 (297)
234 PF13424 TPR_12: Tetratricopep 96.4 0.01 2.2E-07 42.6 5.9 62 610-671 7-74 (78)
235 KOG0543 FKBP-type peptidyl-pro 96.4 0.064 1.4E-06 50.4 12.1 90 23-112 216-319 (397)
236 PF08631 SPO22: Meiosis protei 96.4 0.88 1.9E-05 42.5 22.7 164 539-705 85-273 (278)
237 PF03704 BTAD: Bacterial trans 96.4 0.037 8.1E-07 45.8 9.7 69 507-575 65-138 (146)
238 PF13512 TPR_18: Tetratricopep 96.3 0.13 2.9E-06 41.0 11.8 71 60-130 20-93 (142)
239 PF13428 TPR_14: Tetratricopep 96.3 0.013 2.8E-07 36.2 4.8 40 52-91 3-42 (44)
240 COG3118 Thioredoxin domain-con 96.2 0.84 1.8E-05 41.3 17.5 52 397-448 235-286 (304)
241 PF09205 DUF1955: Domain of un 96.2 0.41 8.8E-06 37.1 13.2 61 439-500 91-151 (161)
242 PF12921 ATP13: Mitochondrial 96.2 0.11 2.3E-06 41.1 10.6 53 393-445 47-99 (126)
243 COG0457 NrfG FOG: TPR repeat [ 96.1 1.1 2.3E-05 41.2 26.0 226 28-255 36-267 (291)
244 PRK11906 transcriptional regul 96.1 0.57 1.2E-05 45.6 17.1 114 520-636 274-400 (458)
245 KOG1941 Acetylcholine receptor 96.1 0.6 1.3E-05 43.3 16.2 129 542-670 126-273 (518)
246 COG0457 NrfG FOG: TPR repeat [ 96.1 1.1 2.4E-05 41.1 28.5 221 448-671 37-264 (291)
247 KOG0543 FKBP-type peptidyl-pro 96.1 0.12 2.5E-06 48.8 11.9 91 57-148 215-320 (397)
248 KOG1585 Protein required for f 96.0 0.94 2E-05 39.6 18.2 146 505-666 92-250 (308)
249 PRK11906 transcriptional regul 96.0 0.6 1.3E-05 45.5 16.7 148 484-635 273-434 (458)
250 KOG1585 Protein required for f 96.0 1 2.2E-05 39.4 17.1 53 333-386 195-250 (308)
251 PF10300 DUF3808: Protein of u 95.9 0.62 1.3E-05 47.2 17.5 181 31-218 173-376 (468)
252 KOG2610 Uncharacterized conser 95.9 0.2 4.4E-06 45.6 12.1 115 482-598 116-234 (491)
253 KOG4555 TPR repeat-containing 95.9 0.14 3E-06 39.4 9.4 91 582-673 52-145 (175)
254 KOG2280 Vacuolar assembly/sort 95.8 2.7 5.9E-05 43.3 31.7 332 333-701 442-793 (829)
255 COG4785 NlpI Lipoprotein NlpI, 95.8 1.1 2.3E-05 38.5 19.9 180 98-289 79-268 (297)
256 PF04053 Coatomer_WDAD: Coatom 95.7 0.35 7.6E-06 48.1 14.2 133 259-424 296-428 (443)
257 KOG2396 HAT (Half-A-TPR) repea 95.6 2.5 5.3E-05 41.5 39.9 113 560-676 447-562 (568)
258 COG1729 Uncharacterized protei 95.6 0.23 5E-06 44.4 11.4 100 16-116 143-247 (262)
259 PF12921 ATP13: Mitochondrial 95.5 0.24 5.1E-06 39.2 10.2 50 603-652 47-97 (126)
260 PF04053 Coatomer_WDAD: Coatom 95.4 0.35 7.6E-06 48.1 13.3 104 541-671 298-401 (443)
261 PF08631 SPO22: Meiosis protei 95.4 2.4 5.1E-05 39.7 26.2 165 505-670 85-273 (278)
262 COG4649 Uncharacterized protei 95.4 1.3 2.8E-05 36.4 14.0 132 17-149 61-197 (221)
263 KOG2066 Vacuolar assembly/sort 95.3 4.2 9.2E-05 42.3 25.9 104 56-166 362-467 (846)
264 KOG1920 IkappaB kinase complex 95.3 1.3 2.8E-05 48.2 17.3 134 159-317 913-1050(1265)
265 PF13512 TPR_18: Tetratricopep 95.3 0.54 1.2E-05 37.6 11.3 58 200-257 21-80 (142)
266 PF13428 TPR_14: Tetratricopep 95.3 0.076 1.7E-06 32.7 5.4 37 86-123 3-39 (44)
267 smart00299 CLH Clathrin heavy 95.2 1.4 3E-05 36.1 15.8 20 579-598 75-94 (140)
268 KOG2610 Uncharacterized conser 95.2 0.7 1.5E-05 42.3 13.1 156 60-216 113-274 (491)
269 PF10300 DUF3808: Protein of u 95.2 1.6 3.4E-05 44.4 17.5 83 519-601 248-333 (468)
270 PF13431 TPR_17: Tetratricopep 95.1 0.035 7.5E-07 31.7 3.2 32 73-104 2-33 (34)
271 PF04840 Vps16_C: Vps16, C-ter 95.1 3.3 7.1E-05 39.4 30.9 106 330-456 179-284 (319)
272 PF09205 DUF1955: Domain of un 94.8 1.4 3.1E-05 34.3 13.9 30 608-637 120-149 (161)
273 PF09613 HrpB1_HrpK: Bacterial 94.7 1.7 3.7E-05 35.6 12.9 54 61-114 21-74 (160)
274 KOG1941 Acetylcholine receptor 94.6 1.3 2.9E-05 41.1 13.2 166 400-565 85-273 (518)
275 PF04097 Nic96: Nup93/Nic96; 94.4 8 0.00017 41.0 25.8 86 335-425 265-354 (613)
276 PF10602 RPN7: 26S proteasome 94.3 0.83 1.8E-05 39.0 11.1 62 51-112 37-101 (177)
277 PF04184 ST7: ST7 protein; In 94.3 4.8 0.0001 39.7 16.9 60 577-636 263-323 (539)
278 COG3629 DnrI DNA-binding trans 94.3 0.8 1.7E-05 41.8 11.3 58 55-112 158-215 (280)
279 KOG4234 TPR repeat-containing 94.0 2.4 5.1E-05 35.9 12.4 91 583-678 105-201 (271)
280 KOG3941 Intermediate in Toll s 94.0 0.6 1.3E-05 41.6 9.4 90 570-659 64-174 (406)
281 COG2976 Uncharacterized protei 93.9 3.5 7.5E-05 35.0 13.8 92 90-183 95-188 (207)
282 KOG4234 TPR repeat-containing 93.8 1.7 3.7E-05 36.7 11.3 90 25-114 105-198 (271)
283 smart00299 CLH Clathrin heavy 93.8 3.1 6.7E-05 34.0 15.5 41 56-96 13-53 (140)
284 PF04184 ST7: ST7 protein; In 93.7 7.9 0.00017 38.3 17.6 150 439-602 173-324 (539)
285 PF10602 RPN7: 26S proteasome 93.6 1.5 3.3E-05 37.4 11.3 59 611-669 39-99 (177)
286 PF00515 TPR_1: Tetratricopept 93.6 0.15 3.3E-06 29.1 3.8 27 645-671 3-29 (34)
287 KOG3941 Intermediate in Toll s 93.4 0.89 1.9E-05 40.6 9.5 97 536-635 65-182 (406)
288 COG3629 DnrI DNA-binding trans 93.0 1.1 2.5E-05 40.8 10.0 76 506-581 155-235 (280)
289 PF13176 TPR_7: Tetratricopept 92.9 0.22 4.8E-06 28.9 3.8 26 645-670 1-26 (36)
290 KOG1550 Extracellular protein 92.8 14 0.00031 38.7 25.5 45 379-426 228-277 (552)
291 PF13431 TPR_17: Tetratricopep 92.8 0.15 3.2E-06 29.2 2.8 32 527-558 2-33 (34)
292 PF07035 Mic1: Colon cancer-as 92.8 5.1 0.00011 33.5 15.4 131 558-704 14-146 (167)
293 PF13170 DUF4003: Protein of u 92.8 8.7 0.00019 36.1 20.9 25 626-650 200-224 (297)
294 PF07035 Mic1: Colon cancer-as 92.7 5.3 0.00011 33.4 14.5 33 38-70 17-49 (167)
295 PF07719 TPR_2: Tetratricopept 92.5 0.26 5.7E-06 28.0 3.8 26 646-671 4-29 (34)
296 KOG2396 HAT (Half-A-TPR) repea 92.4 12 0.00026 37.0 38.0 78 11-89 101-179 (568)
297 KOG1920 IkappaB kinase complex 92.4 21 0.00046 39.6 25.1 24 680-703 1186-1209(1265)
298 COG2976 Uncharacterized protei 92.2 6.6 0.00014 33.4 12.5 88 581-672 97-188 (207)
299 PF13176 TPR_7: Tetratricopept 92.2 0.35 7.6E-06 28.0 4.0 24 87-110 2-25 (36)
300 PF13170 DUF4003: Protein of u 92.1 11 0.00023 35.6 20.9 130 486-617 79-226 (297)
301 PF06552 TOM20_plant: Plant sp 92.0 2.4 5.2E-05 35.4 9.7 24 661-686 98-121 (186)
302 PF09613 HrpB1_HrpK: Bacterial 91.6 6.8 0.00015 32.3 13.7 51 516-566 22-72 (160)
303 PF02259 FAT: FAT domain; Int 91.5 15 0.00032 36.0 22.6 66 536-601 144-212 (352)
304 KOG2062 26S proteasome regulat 91.4 20 0.00044 37.4 35.3 120 582-705 510-633 (929)
305 PF06552 TOM20_plant: Plant sp 91.2 4.7 0.0001 33.8 10.6 110 31-149 7-137 (186)
306 KOG4570 Uncharacterized conser 91.1 1.4 3.1E-05 40.0 8.2 103 393-497 59-163 (418)
307 PF13929 mRNA_stabil: mRNA sta 91.1 12 0.00027 34.2 15.0 134 64-197 142-286 (292)
308 PF07719 TPR_2: Tetratricopept 90.7 0.66 1.4E-05 26.3 4.1 32 679-710 2-33 (34)
309 PF02284 COX5A: Cytochrome c o 89.5 6.1 0.00013 29.3 8.7 45 592-636 29-73 (108)
310 PF00515 TPR_1: Tetratricopept 89.3 0.99 2.1E-05 25.6 4.1 26 87-112 4-29 (34)
311 KOG0276 Vesicle coat complex C 89.1 2.7 5.9E-05 42.1 9.0 81 292-387 665-745 (794)
312 KOG0403 Neoplastic transformat 89.0 24 0.00051 34.4 28.1 80 18-99 53-134 (645)
313 PRK09687 putative lyase; Provi 88.7 21 0.00045 33.4 25.6 179 47-240 34-222 (280)
314 TIGR02561 HrpB1_HrpK type III 88.7 12 0.00025 30.4 11.7 52 63-114 23-74 (153)
315 cd00923 Cyt_c_Oxidase_Va Cytoc 88.5 3.7 8.1E-05 30.0 7.0 43 593-635 27-69 (103)
316 KOG4570 Uncharacterized conser 88.3 6 0.00013 36.3 9.8 102 568-671 59-163 (418)
317 PF13181 TPR_8: Tetratricopept 87.9 0.81 1.7E-05 25.9 3.1 26 646-671 4-29 (34)
318 KOG4648 Uncharacterized conser 87.6 2.1 4.6E-05 39.4 6.8 92 56-148 103-194 (536)
319 PF00637 Clathrin: Region in C 87.5 0.046 1E-06 45.1 -3.4 52 126-177 14-65 (143)
320 KOG4642 Chaperone-dependent E3 87.0 15 0.00032 32.5 11.0 82 27-110 22-104 (284)
321 COG3947 Response regulator con 86.5 26 0.00057 32.1 15.1 44 379-424 149-192 (361)
322 COG4455 ImpE Protein of avirul 86.4 6.9 0.00015 33.9 8.6 63 19-82 5-67 (273)
323 KOG1550 Extracellular protein 86.0 49 0.0011 34.8 27.6 184 66-256 228-429 (552)
324 KOG2063 Vacuolar assembly/sort 85.6 26 0.00057 38.2 14.4 116 86-201 506-638 (877)
325 KOG1464 COP9 signalosome, subu 85.6 27 0.00058 31.4 18.4 207 392-599 20-257 (440)
326 PF08424 NRDE-2: NRDE-2, neces 85.6 35 0.00077 32.8 17.1 99 47-146 16-129 (321)
327 PF13374 TPR_10: Tetratricopep 85.1 2 4.3E-05 25.7 4.0 28 644-671 3-30 (42)
328 PF02284 COX5A: Cytochrome c o 85.0 8.5 0.00018 28.6 7.4 44 453-496 29-72 (108)
329 COG3947 Response regulator con 85.0 14 0.00031 33.7 10.2 58 88-146 283-340 (361)
330 PF13174 TPR_6: Tetratricopept 84.9 1.2 2.7E-05 24.8 2.8 15 655-669 12-26 (33)
331 PF09986 DUF2225: Uncharacteri 84.7 12 0.00026 33.1 10.0 25 683-707 170-194 (214)
332 KOG2062 26S proteasome regulat 84.6 57 0.0012 34.4 37.0 120 514-636 511-634 (929)
333 PF11207 DUF2989: Protein of u 84.5 10 0.00022 32.7 8.8 40 658-697 155-197 (203)
334 PF14561 TPR_20: Tetratricopep 84.5 14 0.0003 27.2 8.9 61 73-133 11-72 (90)
335 KOG4648 Uncharacterized conser 84.4 6.1 0.00013 36.6 8.0 96 89-188 102-197 (536)
336 PF13374 TPR_10: Tetratricopep 84.3 2.2 4.8E-05 25.5 3.9 28 679-706 3-30 (42)
337 PF13174 TPR_6: Tetratricopept 84.3 2.8 6E-05 23.3 4.1 29 681-709 3-31 (33)
338 COG2909 MalT ATP-dependent tra 84.3 66 0.0014 34.8 28.3 224 480-703 426-684 (894)
339 KOG0276 Vesicle coat complex C 84.1 32 0.00069 35.1 13.1 98 550-668 649-746 (794)
340 cd00923 Cyt_c_Oxidase_Va Cytoc 83.9 15 0.00032 27.1 8.7 44 453-496 26-69 (103)
341 PF08424 NRDE-2: NRDE-2, neces 83.9 42 0.00091 32.3 17.3 117 556-674 49-185 (321)
342 COG2909 MalT ATP-dependent tra 83.4 72 0.0016 34.6 27.1 226 301-529 423-684 (894)
343 KOG0376 Serine-threonine phosp 83.0 4.2 9.1E-05 39.8 6.8 108 19-130 8-116 (476)
344 PF00637 Clathrin: Region in C 82.7 0.75 1.6E-05 37.8 1.7 85 579-670 13-97 (143)
345 PF11207 DUF2989: Protein of u 82.5 12 0.00025 32.3 8.5 20 572-591 177-196 (203)
346 COG4455 ImpE Protein of avirul 82.4 10 0.00022 33.0 7.9 75 472-547 4-81 (273)
347 PF13181 TPR_8: Tetratricopept 82.4 3.9 8.4E-05 23.0 4.2 27 86-112 3-29 (34)
348 TIGR02561 HrpB1_HrpK type III 82.1 26 0.00056 28.5 12.7 21 303-323 54-74 (153)
349 KOG4507 Uncharacterized conser 81.2 13 0.00028 37.5 9.4 147 13-165 569-721 (886)
350 PF10345 Cohesin_load: Cohesin 81.1 83 0.0018 33.7 43.8 184 33-217 39-253 (608)
351 PF13929 mRNA_stabil: mRNA sta 81.1 46 0.001 30.7 15.7 62 536-597 200-262 (292)
352 PF04097 Nic96: Nup93/Nic96; 80.8 84 0.0018 33.6 22.1 44 297-341 115-158 (613)
353 PRK15180 Vi polysaccharide bio 80.6 63 0.0014 32.0 30.6 157 513-672 623-805 (831)
354 KOG1586 Protein required for f 79.6 44 0.00096 29.6 16.6 18 60-77 24-41 (288)
355 PF10579 Rapsyn_N: Rapsyn N-te 79.6 6.9 0.00015 27.5 5.1 46 655-700 18-65 (80)
356 KOG0545 Aryl-hydrocarbon recep 79.3 38 0.00083 30.2 10.5 100 15-114 178-294 (329)
357 PF07163 Pex26: Pex26 protein; 79.3 25 0.00053 32.1 9.6 85 443-527 92-181 (309)
358 PF09477 Type_III_YscG: Bacter 79.2 25 0.00054 26.6 9.3 78 65-148 21-98 (116)
359 PF07163 Pex26: Pex26 protein; 79.2 20 0.00044 32.6 9.1 86 57-142 90-181 (309)
360 TIGR02508 type_III_yscG type I 79.2 24 0.00051 26.3 8.7 51 92-148 47-97 (115)
361 KOG1464 COP9 signalosome, subu 79.1 49 0.0011 29.9 20.5 204 358-561 21-254 (440)
362 TIGR03504 FimV_Cterm FimV C-te 78.5 4 8.7E-05 25.0 3.3 22 160-181 5-26 (44)
363 KOG4642 Chaperone-dependent E3 77.8 51 0.0011 29.4 11.2 117 63-181 23-144 (284)
364 smart00028 TPR Tetratricopepti 77.2 4.2 9.1E-05 21.9 3.3 24 647-670 5-28 (34)
365 KOG4507 Uncharacterized conser 77.1 17 0.00037 36.7 8.8 132 171-304 590-721 (886)
366 PF10579 Rapsyn_N: Rapsyn N-te 77.1 11 0.00023 26.6 5.4 46 62-107 18-66 (80)
367 PF07721 TPR_4: Tetratricopept 77.0 4.4 9.6E-05 21.2 2.9 14 92-105 9-22 (26)
368 PRK09687 putative lyase; Provi 76.8 66 0.0014 30.1 27.8 221 13-255 35-265 (280)
369 COG1747 Uncharacterized N-term 76.7 88 0.0019 31.5 25.1 93 327-424 65-157 (711)
370 TIGR03504 FimV_Cterm FimV C-te 76.3 4.9 0.00011 24.6 3.3 22 649-670 5-26 (44)
371 COG0790 FOG: TPR repeat, SEL1 75.9 72 0.0016 30.1 20.8 150 481-638 53-221 (292)
372 KOG0687 26S proteasome regulat 75.8 71 0.0015 30.0 13.0 18 518-535 36-53 (393)
373 KOG0551 Hsp90 co-chaperone CNS 75.7 29 0.00063 32.5 9.3 90 613-704 86-179 (390)
374 KOG2066 Vacuolar assembly/sort 75.2 1.2E+02 0.0026 32.4 28.7 99 235-340 367-467 (846)
375 KOG1586 Protein required for f 73.6 66 0.0014 28.6 20.3 58 200-257 165-228 (288)
376 smart00028 TPR Tetratricopepti 73.4 7.8 0.00017 20.7 3.8 30 680-709 3-32 (34)
377 KOG4077 Cytochrome c oxidase, 72.9 26 0.00057 27.3 7.0 44 593-636 69-112 (149)
378 KOG1308 Hsp70-interacting prot 72.5 2.9 6.3E-05 38.8 2.4 91 585-678 126-217 (377)
379 PF02259 FAT: FAT domain; Int 72.0 1E+02 0.0022 30.1 23.8 66 432-497 144-212 (352)
380 PF14853 Fis1_TPR_C: Fis1 C-te 71.9 17 0.00037 23.4 5.1 31 648-680 6-36 (53)
381 PF04910 Tcf25: Transcriptiona 71.0 1.1E+02 0.0024 30.0 14.5 130 78-217 34-167 (360)
382 PRK11619 lytic murein transgly 70.3 1.6E+02 0.0035 31.7 40.2 208 410-632 253-463 (644)
383 PF10345 Cohesin_load: Cohesin 70.1 1.6E+02 0.0035 31.6 43.8 195 48-252 28-253 (608)
384 TIGR02508 type_III_yscG type I 70.0 43 0.00094 25.0 8.5 78 100-184 21-98 (115)
385 KOG2471 TPR repeat-containing 69.4 1.3E+02 0.0028 30.2 14.7 39 341-379 30-68 (696)
386 PRK11619 lytic murein transgly 69.1 1.7E+02 0.0037 31.5 40.0 52 372-424 321-372 (644)
387 PF14689 SPOB_a: Sensor_kinase 68.2 9.5 0.00021 25.6 3.6 45 624-670 6-50 (62)
388 cd00280 TRFH Telomeric Repeat 67.9 76 0.0016 27.0 11.4 47 66-112 85-139 (200)
389 PF07575 Nucleopor_Nup85: Nup8 66.7 1.8E+02 0.0039 30.9 19.7 24 85-109 150-173 (566)
390 PRK10564 maltose regulon perip 66.5 15 0.00032 33.9 5.5 44 186-229 253-297 (303)
391 COG1747 Uncharacterized N-term 66.4 1.5E+02 0.0033 29.9 25.6 162 469-636 66-233 (711)
392 smart00386 HAT HAT (Half-A-TPR 66.0 19 0.00042 19.5 4.3 27 65-91 2-28 (33)
393 KOG1308 Hsp70-interacting prot 65.6 7.8 0.00017 36.2 3.6 116 62-180 126-241 (377)
394 KOG4077 Cytochrome c oxidase, 65.4 47 0.001 26.0 7.0 44 453-496 68-111 (149)
395 PF14561 TPR_20: Tetratricopep 65.3 53 0.0011 24.2 8.6 64 37-101 10-75 (90)
396 PF12862 Apc5: Anaphase-promot 64.7 40 0.00087 25.1 6.8 26 87-112 44-69 (94)
397 PHA02875 ankyrin repeat protei 64.3 1.6E+02 0.0036 29.6 14.3 9 668-676 220-228 (413)
398 PRK10941 hypothetical protein; 63.3 1.1E+02 0.0024 28.4 10.6 62 86-148 183-244 (269)
399 COG5187 RPN7 26S proteasome re 63.3 1.3E+02 0.0027 27.9 12.6 24 575-598 117-140 (412)
400 PRK10941 hypothetical protein; 63.3 93 0.002 28.9 10.1 77 54-130 185-262 (269)
401 PRK12798 chemotaxis protein; R 62.7 1.6E+02 0.0035 29.0 22.6 49 132-180 125-174 (421)
402 cd08819 CARD_MDA5_2 Caspase ac 62.0 59 0.0013 23.6 7.4 14 98-111 50-63 (88)
403 KOG2471 TPR repeat-containing 59.9 2E+02 0.0043 29.0 15.1 37 513-549 344-380 (696)
404 KOG1498 26S proteasome regulat 59.3 1.8E+02 0.0039 28.3 15.9 96 124-219 136-242 (439)
405 KOG0376 Serine-threonine phosp 58.6 29 0.00062 34.4 6.2 104 58-164 12-115 (476)
406 PF11846 DUF3366: Domain of un 58.3 54 0.0012 28.6 7.6 36 639-676 140-175 (193)
407 KOG2034 Vacuolar sorting prote 56.9 3E+02 0.0065 30.2 25.0 53 89-147 363-417 (911)
408 COG0735 Fur Fe2+/Zn2+ uptake r 56.1 67 0.0015 26.4 7.2 37 85-121 21-57 (145)
409 PF07575 Nucleopor_Nup85: Nup8 56.1 2.8E+02 0.006 29.5 22.0 61 573-635 405-465 (566)
410 PF14689 SPOB_a: Sensor_kinase 56.0 27 0.00059 23.4 4.1 23 613-635 28-50 (62)
411 PF11663 Toxin_YhaV: Toxin wit 55.6 15 0.00033 29.0 3.2 30 621-652 108-137 (140)
412 cd00280 TRFH Telomeric Repeat 55.4 93 0.002 26.5 7.7 41 614-657 117-157 (200)
413 KOG0551 Hsp90 co-chaperone CNS 55.1 63 0.0014 30.4 7.3 48 62-109 131-178 (390)
414 COG5159 RPN6 26S proteasome re 55.0 1.8E+02 0.0038 26.9 14.0 162 544-705 9-192 (421)
415 PF11846 DUF3366: Domain of un 54.8 59 0.0013 28.4 7.3 30 431-460 141-170 (193)
416 COG0735 Fur Fe2+/Zn2+ uptake r 54.8 1.1E+02 0.0024 25.1 8.2 58 249-306 11-68 (145)
417 PF09670 Cas_Cas02710: CRISPR- 53.6 2.3E+02 0.0049 28.2 11.6 55 513-567 140-198 (379)
418 KOG1114 Tripeptidyl peptidase 53.5 3.6E+02 0.0077 30.0 13.6 49 188-236 1230-1279(1304)
419 KOG2297 Predicted translation 52.8 2E+02 0.0043 26.9 16.4 261 94-391 123-399 (412)
420 PF12862 Apc5: Anaphase-promot 52.7 82 0.0018 23.4 6.7 53 619-671 9-69 (94)
421 PF09670 Cas_Cas02710: CRISPR- 52.5 2.5E+02 0.0054 27.9 12.8 56 23-79 139-198 (379)
422 KOG0545 Aryl-hydrocarbon recep 52.5 1.8E+02 0.0039 26.3 10.5 60 122-182 233-292 (329)
423 PHA02875 ankyrin repeat protei 52.4 2.6E+02 0.0056 28.1 14.1 14 94-107 75-88 (413)
424 smart00777 Mad3_BUB1_I Mad3/BU 52.4 80 0.0017 25.1 6.7 41 662-702 82-123 (125)
425 PF02184 HAT: HAT (Half-A-TPR) 52.3 39 0.00084 19.0 3.5 23 659-683 3-25 (32)
426 COG4976 Predicted methyltransf 52.3 73 0.0016 28.2 6.9 59 24-83 4-62 (287)
427 COG4259 Uncharacterized protei 52.1 97 0.0021 23.1 6.6 52 628-681 57-108 (121)
428 PF09477 Type_III_YscG: Bacter 52.0 1E+02 0.0023 23.4 10.3 79 98-183 20-98 (116)
429 KOG3364 Membrane protein invol 51.6 1.3E+02 0.0027 24.3 9.8 71 605-678 29-104 (149)
430 KOG3807 Predicted membrane pro 51.5 2.2E+02 0.0047 26.9 12.4 59 510-568 281-341 (556)
431 KOG0890 Protein kinase of the 51.4 6E+02 0.013 32.0 41.9 60 363-425 1670-1729(2382)
432 PF13762 MNE1: Mitochondrial s 51.2 1.4E+02 0.003 24.5 11.2 44 121-164 81-125 (145)
433 COG0790 FOG: TPR repeat, SEL1 50.6 2.2E+02 0.0048 26.8 21.4 150 446-604 53-222 (292)
434 PF04910 Tcf25: Transcriptiona 50.2 2.6E+02 0.0056 27.5 20.7 101 47-147 37-167 (360)
435 PF11817 Foie-gras_1: Foie gra 50.1 69 0.0015 29.4 7.2 57 648-704 183-244 (247)
436 PRK15180 Vi polysaccharide bio 49.9 2.8E+02 0.0061 27.8 30.7 129 18-149 292-421 (831)
437 PF03745 DUF309: Domain of unk 49.6 78 0.0017 21.3 5.5 50 24-73 8-62 (62)
438 PF00244 14-3-3: 14-3-3 protei 48.9 2.1E+02 0.0045 26.0 11.6 59 88-146 5-64 (236)
439 KOG0403 Neoplastic transformat 48.8 2.9E+02 0.0062 27.6 32.2 61 508-568 513-573 (645)
440 PF10366 Vps39_1: Vacuolar sor 48.5 82 0.0018 24.2 6.2 26 541-566 42-67 (108)
441 PF04090 RNA_pol_I_TF: RNA pol 48.3 1.9E+02 0.0041 25.3 10.7 61 15-76 41-102 (199)
442 PF08311 Mad3_BUB1_I: Mad3/BUB 47.8 1.4E+02 0.0031 23.8 10.4 43 626-668 81-124 (126)
443 PRK13342 recombination factor 47.7 3.1E+02 0.0067 27.7 19.1 55 551-605 243-302 (413)
444 PF00244 14-3-3: 14-3-3 protei 47.4 2.2E+02 0.0048 25.9 10.5 55 510-564 7-63 (236)
445 KOG2063 Vacuolar assembly/sort 46.7 4.6E+02 0.01 29.3 29.9 114 192-305 507-638 (877)
446 PRK12798 chemotaxis protein; R 46.7 3E+02 0.0066 27.3 21.3 155 446-601 124-285 (421)
447 KOG3364 Membrane protein invol 46.5 1.6E+02 0.0034 23.8 10.3 67 536-602 30-100 (149)
448 KOG4521 Nuclear pore complex, 46.3 5.1E+02 0.011 29.7 14.0 82 227-310 986-1071(1480)
449 PF11848 DUF3368: Domain of un 46.3 73 0.0016 20.0 4.9 37 22-58 9-45 (48)
450 cd08819 CARD_MDA5_2 Caspase ac 45.7 1.2E+02 0.0025 22.2 7.4 68 33-105 20-87 (88)
451 PF04190 DUF410: Protein of un 44.6 2.6E+02 0.0057 25.9 18.1 190 445-668 1-216 (260)
452 PRK13184 pknD serine/threonine 44.4 5.3E+02 0.011 29.4 27.8 321 336-671 483-868 (932)
453 KOG2422 Uncharacterized conser 44.3 3.9E+02 0.0084 27.8 16.1 49 28-76 251-310 (665)
454 PRK13184 pknD serine/threonine 44.1 5.3E+02 0.012 29.3 26.9 290 368-671 480-832 (932)
455 COG5108 RPO41 Mitochondrial DN 43.9 1.9E+02 0.0041 30.3 9.3 75 578-655 33-115 (1117)
456 PF13762 MNE1: Mitochondrial s 42.7 1.9E+02 0.0041 23.7 10.6 78 508-585 43-127 (145)
457 COG4976 Predicted methyltransf 42.3 66 0.0014 28.5 5.2 58 59-116 4-61 (287)
458 KOG4567 GTPase-activating prot 41.1 2.7E+02 0.0059 26.2 9.0 44 558-601 263-306 (370)
459 PF11817 Foie-gras_1: Foie gra 40.7 1.5E+02 0.0032 27.2 7.8 22 403-424 183-204 (247)
460 KOG2659 LisH motif-containing 40.0 2.8E+02 0.006 24.9 8.8 101 603-703 21-128 (228)
461 smart00777 Mad3_BUB1_I Mad3/BU 39.7 1.9E+02 0.0042 23.0 9.0 43 625-667 80-123 (125)
462 KOG0686 COP9 signalosome, subu 39.4 3.9E+02 0.0084 26.4 13.9 61 51-111 151-214 (466)
463 PF06957 COPI_C: Coatomer (COP 38.3 82 0.0018 31.3 5.9 40 637-678 292-333 (422)
464 PRK11639 zinc uptake transcrip 37.4 2E+02 0.0044 24.4 7.5 47 87-133 28-74 (169)
465 KOG0991 Replication factor C, 37.2 3.1E+02 0.0068 24.7 13.8 139 120-267 131-281 (333)
466 PRK08691 DNA polymerase III su 37.0 5.2E+02 0.011 28.1 11.6 85 31-118 180-279 (709)
467 PF05944 Phage_term_smal: Phag 36.9 2.2E+02 0.0049 22.9 7.9 32 51-82 49-80 (132)
468 PF11663 Toxin_YhaV: Toxin wit 36.7 37 0.00081 27.0 2.7 32 584-617 106-137 (140)
469 PRK14956 DNA polymerase III su 36.5 4.9E+02 0.011 26.8 11.1 100 34-156 185-285 (484)
470 PF12968 DUF3856: Domain of Un 36.4 2.1E+02 0.0046 22.5 7.7 84 26-109 20-125 (144)
471 KOG3807 Predicted membrane pro 36.3 3.8E+02 0.0083 25.4 12.4 60 404-463 281-340 (556)
472 PF10366 Vps39_1: Vacuolar sor 36.2 2E+02 0.0043 22.1 7.6 27 86-112 41-67 (108)
473 PF04090 RNA_pol_I_TF: RNA pol 36.1 2.1E+02 0.0046 25.0 7.3 60 51-110 42-102 (199)
474 PF09986 DUF2225: Uncharacteri 36.0 3.2E+02 0.0069 24.4 11.2 22 615-636 172-193 (214)
475 COG4941 Predicted RNA polymera 35.6 4.1E+02 0.0088 25.5 11.6 115 553-671 271-393 (415)
476 PF09454 Vps23_core: Vps23 cor 35.5 1.1E+02 0.0023 20.9 4.4 49 48-96 6-54 (65)
477 PF14853 Fis1_TPR_C: Fis1 C-te 35.4 1.2E+02 0.0027 19.5 6.2 20 198-217 10-29 (53)
478 PF04762 IKI3: IKI3 family; I 34.9 7.5E+02 0.016 28.4 16.4 130 86-218 696-843 (928)
479 KOG0686 COP9 signalosome, subu 34.0 4.8E+02 0.01 25.8 16.7 93 85-179 151-254 (466)
480 PF10255 Paf67: RNA polymerase 33.3 2.4E+02 0.0052 28.0 8.1 98 14-111 74-191 (404)
481 PRK09857 putative transposase; 33.0 3E+02 0.0066 26.0 8.6 64 89-153 211-274 (292)
482 PRK11639 zinc uptake transcrip 32.5 3.1E+02 0.0068 23.3 8.4 57 252-308 19-75 (169)
483 PRK09462 fur ferric uptake reg 32.4 2.4E+02 0.0051 23.3 7.0 61 598-659 7-68 (148)
484 KOG2422 Uncharacterized conser 31.4 6.3E+02 0.014 26.4 17.8 118 63-180 251-404 (665)
485 PF07720 TPR_3: Tetratricopept 31.0 1.1E+02 0.0025 17.7 3.6 21 87-107 4-24 (36)
486 KOG0292 Vesicle coat complex C 30.6 7.9E+02 0.017 27.4 12.3 30 15-44 988-1020(1202)
487 PF12926 MOZART2: Mitotic-spin 30.0 2.2E+02 0.0048 20.7 8.1 46 36-81 29-74 (88)
488 PF09454 Vps23_core: Vps23 cor 29.9 99 0.0021 21.1 3.5 53 11-64 4-56 (65)
489 PF09797 NatB_MDM20: N-acetylt 29.9 5.5E+02 0.012 25.3 20.6 49 278-327 203-251 (365)
490 COG4941 Predicted RNA polymera 29.6 5.1E+02 0.011 24.9 11.3 116 344-463 272-394 (415)
491 KOG4567 GTPase-activating prot 29.5 3.9E+02 0.0085 25.2 8.1 43 349-391 264-306 (370)
492 PRK10564 maltose regulon perip 29.1 1.2E+02 0.0025 28.5 4.9 31 437-467 260-290 (303)
493 PF15297 CKAP2_C: Cytoskeleton 29.0 5.4E+02 0.012 24.9 9.3 83 506-588 105-190 (353)
494 PRK14951 DNA polymerase III su 29.0 7.6E+02 0.016 26.6 11.8 83 33-118 187-284 (618)
495 KOG1114 Tripeptidyl peptidase 28.6 8.9E+02 0.019 27.3 14.3 21 241-261 1092-1112(1304)
496 KOG1839 Uncharacterized protei 28.5 6.4E+02 0.014 29.4 11.0 156 514-669 942-1125(1236)
497 PF12968 DUF3856: Domain of Un 28.4 3E+02 0.0064 21.7 10.4 59 645-703 57-125 (144)
498 KOG0292 Vesicle coat complex C 28.1 4.9E+02 0.011 28.8 9.5 111 292-426 671-781 (1202)
499 PF11123 DNA_Packaging_2: DNA 27.9 2.1E+02 0.0046 19.9 4.9 33 65-97 12-44 (82)
500 KOG2034 Vacuolar sorting prote 27.9 8.8E+02 0.019 27.0 28.0 170 23-215 366-556 (911)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.5e-84 Score=697.04 Aligned_cols=675 Identities=17% Similarity=0.228 Sum_probs=647.0
Q ss_pred CCCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-hhHHH
Q 005161 10 GAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC-ESAYS 88 (711)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 88 (711)
...|+..+++.++++|++.|++++|..+|+.|.+.|++|+..+|..++..|.+.+.++.|..++..+.+.++.. ...++
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999888754 56889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 005161 89 AMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVS 168 (711)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (711)
.++..|++.|+.+.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.+
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 999999999999999999999975 6888999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHH
Q 005161 169 NMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLD 248 (711)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 248 (711)
++..+.+++..+.+.|+.||..+|+++|.+|++.|+++.|..+|++|. .||..+|+.++.+|.+.|+.++|..+|.
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996 4688999999999999999999999999
Q ss_pred HHHHCCCCCh-hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCcc
Q 005161 249 DMLNMGCQHS-SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFE 327 (711)
Q Consensus 249 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 327 (711)
+|.+.|..|+ .+++.++.++.+.|+.+.+.+++..+...+..||..+|+.++.+|++.|++++|.++|++|.. |+
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CC
Confidence 9999999888 889999999999999999999999999999999999999999999999999999999999975 46
Q ss_pred HhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 328 DNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRM 407 (711)
Q Consensus 328 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (711)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 66999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHH
Q 005161 408 YVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDE 487 (711)
Q Consensus 408 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 487 (711)
|++.|++++|.++|+.|. .+|..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|+.+.
T Consensus 434 y~k~g~~~~A~~vf~~m~-----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIP-----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred HHHcCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH
Confidence 999999999999999994 46889999999999999999999999999986 589999999999999999999999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005161 488 LSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFD 567 (711)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 567 (711)
+.+++..+.+.|+.++..+++.++.+|+++|++++|.++|+.+ .+|..+|++++.+|++.|+.++|.++|++|.+.
T Consensus 508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999987 579999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhH
Q 005161 568 GFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMK-ETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSY 646 (711)
Q Consensus 568 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 646 (711)
|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|. +.||..+|
T Consensus 584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~ 660 (857)
T PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVW 660 (857)
T ss_pred CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHH
Confidence 999999999999999999999999999999999 67999999999999999999999999999999983 78999999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcchHHHHHHHHHHHHHhCcCC
Q 005161 647 NTLIKAYGIAGMVEDAVGLVKEMRENGIEPD-KITYTNMITALQRNDKFLEAIKWSLWMKQIGLQD 711 (711)
Q Consensus 647 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~ 711 (711)
++|+.+|...|+.+.+....+++.+ +.|+ ...|..+.+.|...|+|++|.++.+.|+++|++.
T Consensus 661 ~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 661 GALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999988 7885 5778888999999999999999999999999874
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.7e-81 Score=676.52 Aligned_cols=650 Identities=17% Similarity=0.246 Sum_probs=623.5
Q ss_pred ChHHhHhhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 005161 1 MIREVRMSLGAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLG 80 (711)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 80 (711)
+|++|. ..|++|+..+|..++++|.+.+.+..|.+++..+++.+..++...++.++..|++.|+++.|.++|+.|.+.+
T Consensus 73 l~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d 151 (857)
T PLN03077 73 LLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD 151 (857)
T ss_pred HHHHHH-hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCC
Confidence 367887 7899999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005161 81 LVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTL 160 (711)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (711)
..+|+.++.+|++.|++++|+++|++|...|+.||..||+.++.+|++.++++.+.+++..+.+.|+.|+..++|.|
T Consensus 152 ---~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 152 ---LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred ---eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCH
Q 005161 161 MTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDE 240 (711)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (711)
+.+|++.|+++.|.++|++|.. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|.+.|+.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 9999999999999999999985 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCh-hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 005161 241 EGAVNTLDDMLNMGCQHS-SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDK 319 (711)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 319 (711)
+.+.+++..+.+.|..++ .+++.++..|++.|++++|.++|+.+. .||..+|+.++.+|.+.|++++|.++|++|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999888 899999999999999999999999985 358889999999999999999999999999
Q ss_pred hhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 005161 320 RWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLI 399 (711)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 399 (711)
...++.|+..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|+.|.+ +|..
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~v 456 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVI 456 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875 5888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 005161 400 AFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCC 479 (711)
Q Consensus 400 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 479 (711)
+|+.++.+|++.|+.++|+.+|++|.. ++.||..+|+.++.+|++.|..+.+.+++..+.+.|+.++..+++.+++.|
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 999999999999999999999999964 589999999999999999999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHhcCCHHHHH
Q 005161 480 ARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL-VDVISYNTIIAAYGQNKNLESMS 558 (711)
Q Consensus 480 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 558 (711)
++.|++++|..+|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.+. ||..+|+.++.+|.+.|.+++|.
T Consensus 535 ~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 9999999999999887 67999999999999999999999999999999887 89999999999999999999999
Q ss_pred HHHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 005161 559 STVQEMQ-FDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKEC 637 (711)
Q Consensus 559 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (711)
++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|. +.||..+|++|+.+|...|+.+.+....+++.+
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~- 685 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE- 685 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-
Confidence 9999999 67999999999999999999999999999999985 789999999999999999999999999999987
Q ss_pred CCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 638 GLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 638 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
+.|+ ...|..+.+.|...|+|++|.++.+.|.+.|+.+++
T Consensus 686 -l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 686 -LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred -hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC
Confidence 5676 677888889999999999999999999999998865
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-68 Score=562.96 Aligned_cols=549 Identities=17% Similarity=0.229 Sum_probs=501.0
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005161 46 VQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC--ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWL 123 (711)
Q Consensus 46 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 123 (711)
..++...|..++..|++.|++++|.++|+.|.+.+..+ ...+..++..|.+.|..++|+.+++.|.. |+..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 35778889999999999999999999999999988754 44567788999999999999999998865 8999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 005161 124 VMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAG 203 (711)
Q Consensus 124 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 203 (711)
.++.+|++.|+++.|.++|++|.+.|+.||..+|+.|+.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHH
Q 005161 204 NYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKG 283 (711)
Q Consensus 204 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 283 (711)
++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|...+
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~----------------------------- 572 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET----------------------------- 572 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc-----------------------------
Confidence 999999999999999999999999999999999999999999999987631
Q ss_pred hhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcH
Q 005161 284 SLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNL 363 (711)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 363 (711)
.+..||..+|+.++.+|++.|++++|.++|+.|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 573 ---~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~ 649 (1060)
T PLN03218 573 ---HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649 (1060)
T ss_pred ---CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Confidence 12457999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 005161 364 HIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRI 443 (711)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (711)
.+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.++.+|++.|++++|.++|+.| ...++.||..+|+.++.+
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM-~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 457899999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHH
Q 005161 444 YQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRV 523 (711)
Q Consensus 444 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 523 (711)
|++.|++++|.++|++|...|+.||..+|+.++.+|++.|+++.|.++|.+|.+.|+.||..+|+.++..|. +.++++
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka 806 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKA 806 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987654 246666
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005161 524 RKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETS 603 (711)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (711)
..+.+.+...+.. ......+..+.|..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.+...+
T Consensus 807 ~~l~~~v~~f~~g---------~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 807 CALGEPVVSFDSG---------RPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred hhhhhhhhhhhcc---------ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 6655433322110 1111223346799999999999999999999999988888899999999999998888
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChH
Q 005161 604 CTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLC 644 (711)
Q Consensus 604 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 644 (711)
..|+..+|+.+++++.+. .++|..+|++|.+.|+.|+..
T Consensus 878 ~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 899999999999998532 468999999999999999864
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-67 Score=555.66 Aligned_cols=542 Identities=15% Similarity=0.248 Sum_probs=335.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 005161 117 PNLENWLVMLNAYSQQGKLEEAELVLVSMREAGF-SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSM 195 (711)
Q Consensus 117 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 195 (711)
++...|..++..+++.|++++|.++|++|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4555666677777777777777777777777664 45666666777777777777777777777764 777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCC
Q 005161 196 IEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTD 275 (711)
Q Consensus 196 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 275 (711)
+.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv-------------------- 503 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV-------------------- 503 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC--------------------
Confidence 777777777777777777777777777777777777777777777777777776666553
Q ss_pred cHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHh
Q 005161 276 NVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMH 355 (711)
Q Consensus 276 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 355 (711)
.||..+|+.+|.+|++.|++++|.++|++|...++.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 504 --------------~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 504 --------------EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred --------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 346666666666666666666666666666666666666666666666666666666666666665
Q ss_pred h--cCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 005161 356 I--CDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD 433 (711)
Q Consensus 356 ~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 433 (711)
. .++.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++| ...|+.||
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM-~~~Gv~PD 648 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM-KKKGVKPD 648 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCC
Confidence 4 45566666666666666666666666666666666666666666666666666666666666666666 34556666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Q 005161 434 AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDI 513 (711)
Q Consensus 434 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 513 (711)
..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.|+.+
T Consensus 649 ~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhccCcHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 005161 514 YGKAKLFKRVRKLFSMAKKLGL-VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENF 592 (711)
Q Consensus 514 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 592 (711)
|++.|++++|.++|+.|...+. |+..+|+.++.+|++.|++++|.+++.+|.+.|+.|+..+|++++..|.+ ++++|
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka 806 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKA 806 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHH
Confidence 6666666666666666665555 56666666666666666666666666666666666666666666654331 23333
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHc
Q 005161 593 KNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMREN 672 (711)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 672 (711)
..+.+.+... + ........+..+.|..+|++|++.|+.||..+|+.++.+++..+..+.+..+++.|...
T Consensus 807 ~~l~~~v~~f---------~-~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 807 CALGEPVVSF---------D-SGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred hhhhhhhhhh---------h-ccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence 3332222210 0 00001111223345555555555555555555555554444445555555555444444
Q ss_pred CCCCCcchHHHHHHHHHhcchHHHHHHHHHHHHHhCcCC
Q 005161 673 GIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGLQD 711 (711)
Q Consensus 673 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~ 711 (711)
+..|+..+|+.++.++.+. .++|..++++|.+.|+.|
T Consensus 877 ~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 877 ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCC
Confidence 4444455555555544221 234555555555555543
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.4e-61 Score=506.16 Aligned_cols=511 Identities=18% Similarity=0.255 Sum_probs=462.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDK-VVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMT 162 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 162 (711)
...|+.++..|.+.|++++|+++|+.|...+ ..|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.|+.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 3579999999999999999999999998764 678999999999999999999999999999999999999999999999
Q ss_pred HhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHH
Q 005161 163 GYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEG 242 (711)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (711)
+|++.|+++.|.++|++|.+ ||..+|+++|.+|++.|++++|+++|++|.+.|+.|+..+|..++.+|...|+.+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999985 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhc
Q 005161 243 AVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWK 322 (711)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 322 (711)
+.+++..+.+.|. .+|..+++.|+.+|++.|++++|.++|++|...
T Consensus 243 ~~~l~~~~~~~g~----------------------------------~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 288 (697)
T PLN03081 243 GQQLHCCVLKTGV----------------------------------VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK 288 (697)
T ss_pred HHHHHHHHHHhCC----------------------------------CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 9998888877664 458889999999999999999999999999754
Q ss_pred CCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005161 323 DTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFT 402 (711)
Q Consensus 323 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 402 (711)
+..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|+.||..+++
T Consensus 289 ----~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~ 364 (697)
T PLN03081 289 ----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364 (697)
T ss_pred ----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence 5669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 005161 403 VVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARA 482 (711)
Q Consensus 403 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 482 (711)
+++.+|++.|++++|.++|+.|. .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999994 4799999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHh-CCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 005161 483 LPIDELSRVFDEMLQ-HGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTV 561 (711)
Q Consensus 483 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 561 (711)
|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++.+. ..|+..+|++++.+|...|+++.|..++
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 999999999999986 6999999999999999999999999999987652 2378899999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH---HHHh----hc----CCHHHHHH
Q 005161 562 QEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHY-TYNIMI---DIYG----EQ----GWINEVVG 629 (711)
Q Consensus 562 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~---~~~~----~~----g~~~~A~~ 629 (711)
+++.+.+ +.+..+|..++..|++.|++++|.++++.|.+.|+...+. +|..+. ..+. .. .-++...+
T Consensus 518 ~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 596 (697)
T PLN03081 518 EKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDE 596 (697)
T ss_pred HHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHH
Confidence 9987653 4457899999999999999999999999999988764332 232111 0000 00 11345667
Q ss_pred HHHHHHHCCCCCChH
Q 005161 630 VLTELKECGLRPDLC 644 (711)
Q Consensus 630 ~~~~~~~~~~~p~~~ 644 (711)
+..+|.+.|..|+..
T Consensus 597 l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 597 LMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHcCCCCCcc
Confidence 778888899999853
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.1e-61 Score=506.36 Aligned_cols=473 Identities=19% Similarity=0.279 Sum_probs=415.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHH
Q 005161 187 PDETTYRSMIEGWGRAGNYREAKWYYKELKHLG-YKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLL 265 (711)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 265 (711)
++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++.+.+.+++..+.+.|.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~---------- 154 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF---------- 154 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----------
Confidence 455567777777777777777777777776543 567777777777777777777776666666665543
Q ss_pred HHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChh
Q 005161 266 QAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLA 345 (711)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (711)
.||..+++.++..|++.|++++|.++|++|.. |+..+|+.++.+|++.|+++
T Consensus 155 ------------------------~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~ 206 (697)
T PLN03081 155 ------------------------EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYR 206 (697)
T ss_pred ------------------------CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHH
Confidence 34677777888888888888888888888864 56668888888888888888
Q ss_pred hHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005161 346 NAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETME 425 (711)
Q Consensus 346 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 425 (711)
+|.++|++|.+.|+.|+..+|+.++.+|.+.|..+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|.
T Consensus 207 ~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 286 (697)
T PLN03081 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286 (697)
T ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999988888999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred hcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHH
Q 005161 426 KQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNII 505 (711)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 505 (711)
.+|..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.|+..
T Consensus 287 -----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 287 -----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred -----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 005161 506 TLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGK 585 (711)
Q Consensus 506 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 585 (711)
+++.++.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999998864 58889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHH
Q 005161 586 EGQMENFKNVLRRMKE-TSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVG 664 (711)
Q Consensus 586 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 664 (711)
.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999976 589999999999999999999999999998876 578999999999999999999999999
Q ss_pred HHHHHHHcCCCCC-cchHHHHHHHHHhcchHHHHHHHHHHHHHhCcC
Q 005161 665 LVKEMRENGIEPD-KITYTNMITALQRNDKFLEAIKWSLWMKQIGLQ 710 (711)
Q Consensus 665 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 710 (711)
+++++.+ +.|+ ..+|..+++.|.+.|++++|.+++++|+++|++
T Consensus 516 ~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 516 AAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 9999875 7785 579999999999999999999999999999985
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.7e-43 Score=392.67 Aligned_cols=675 Identities=15% Similarity=0.070 Sum_probs=370.6
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...+..+...+...|++++|.++++.+++.. +++...+..+..++...|++++|...|+.+.+.+|.+..++..++..+
T Consensus 159 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 237 (899)
T TIGR02917 159 LYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATIL 237 (899)
T ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3344444455555555555555555554432 334444444445555555555555555555555554444455555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC--------------------------------C-CHHHHHHHHHHHHhcCCHHHHHHH
Q 005161 95 TRLSLYEKAEEVIRLIREDKVV--------------------------------P-NLENWLVMLNAYSQQGKLEEAELV 141 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~--------------------------------~-~~~~~~~l~~~~~~~~~~~~a~~~ 141 (711)
...|++++|...++.+.+..+. | +...+..+...+...|++++|...
T Consensus 238 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 317 (899)
T TIGR02917 238 IEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQY 317 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555444444433221 1 112222333344455555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005161 142 LVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYK 221 (711)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 221 (711)
++.+.+.. +.+...+..+...+.+.|++++|...++.+.+... .+...+..+...+.+.|++++|..+|+++.+...
T Consensus 318 ~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 394 (899)
T TIGR02917 318 LNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDP- 394 (899)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-
Confidence 55555442 23444555555566666666666666666655432 3455566666666666666666666666655421
Q ss_pred ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHH
Q 005161 222 PNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVM 301 (711)
Q Consensus 222 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 301 (711)
.+...+..+...+...|++++|...++.+.+..+........++..+.+.|++++|..+++.+....+. +...+..+..
T Consensus 395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 473 (899)
T TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-NASLHNLLGA 473 (899)
T ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CcHHHHHHHH
Confidence 234445555556666666666666666666655554444555555666666666666666665554433 4556666666
Q ss_pred HHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHH
Q 005161 302 AYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTE 381 (711)
Q Consensus 302 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (711)
.+...|++++|...|+++...++. +...+..+...+...|++++|...++.+.... +.+..++..+...+...|+.++
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666666554432 23345555566666666666666666665543 3345556666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005161 382 AEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKIL 461 (711)
Q Consensus 382 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 461 (711)
|...++.+...+ +.+...+..+...+.+.|++++|..+++.+.... +.+...|..+..++...|++++|...|+.+.
T Consensus 552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666665543 2344555556666666666666666666664322 3445566666666666666666666666665
Q ss_pred hcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHH
Q 005161 462 KSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISY 541 (711)
Q Consensus 462 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 541 (711)
+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|.++++.+.+..+.+...+
T Consensus 629 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 706 (899)
T TIGR02917 629 ALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGF 706 (899)
T ss_pred HhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHH
Confidence 543 2244455566666666666666666666666542 33455555566666666666666666666666655555566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 005161 542 NTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQ 621 (711)
Q Consensus 542 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 621 (711)
..+...+...|++++|...++.+...+ |+..++..+..++.+.|++++|.+.++++.+. .+.+...+..+...|...
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHC
Confidence 666666666666666666666655542 33344445555555555555555555555543 233444555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcchHHHHHHH
Q 005161 622 GWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD-KITYTNMITALQRNDKFLEAIKW 700 (711)
Q Consensus 622 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~ 700 (711)
|++++|...|+++.+.. ++++.+++.++..+...|+ .+|+..++++.+ ..|+ ..++..+..++...|++++|.++
T Consensus 784 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555531 2234445555555544444 444444444444 2332 23334444444444555555555
Q ss_pred HHHHHHhC
Q 005161 701 SLWMKQIG 708 (711)
Q Consensus 701 ~~~m~~~g 708 (711)
++++.+.+
T Consensus 860 ~~~a~~~~ 867 (899)
T TIGR02917 860 LRKAVNIA 867 (899)
T ss_pred HHHHHhhC
Confidence 54444443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-42 Score=389.78 Aligned_cols=672 Identities=13% Similarity=0.036 Sum_probs=561.3
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCH--------------------------
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNV-------------------------- 66 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------------------------- 66 (711)
.+...+..+...+...|++++|...|+.+++.+ +.+..++..++.++...|++
T Consensus 191 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 269 (899)
T TIGR02917 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKAL 269 (899)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 344555555555556666666666666665543 33444444444455444544
Q ss_pred --------HHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005161 67 --------EEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEA 138 (711)
Q Consensus 67 --------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 138 (711)
++|...|+.+.+.++....++..+...+...|++++|...++.+.+..+. +...+..+...+.+.|++++|
T Consensus 270 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN-SHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHH
Confidence 45555555554444444444555666777888888888888888776543 566777888899999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005161 139 ELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHL 218 (711)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 218 (711)
...++.+.+.. +.+...+..+...+.+.|++++|.+.|+++.+..+ .+...+..+...+...|++++|...|+++.+.
T Consensus 349 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 349 IATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 99999998875 45778899999999999999999999999987653 45667888889999999999999999999886
Q ss_pred CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHH
Q 005161 219 GYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSI 298 (711)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 298 (711)
... .......++..+...|++++|..+++.+....+.....+..++..+...|++++|...+++++...+. +...+..
T Consensus 427 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 504 (899)
T TIGR02917 427 DPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAAN 504 (899)
T ss_pred CCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHH
Confidence 433 33455667788999999999999999999988888889999999999999999999999999987766 6778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCC
Q 005161 299 LVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGM 378 (711)
Q Consensus 299 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 378 (711)
++..+...|++++|.+.++++...++. +..++..+...+...|+.++|...++++...+ +.+...+..++..+...|+
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCC
Confidence 999999999999999999999877654 56678889999999999999999999998765 5567788889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005161 379 FTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYY 458 (711)
Q Consensus 379 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 458 (711)
+++|..+++.+.+.. +.+...|..+..++...|++++|...|+.+.... +.+...+..+..++...|++++|...++
T Consensus 583 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 583 LKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998764 4578899999999999999999999999986543 4466778899999999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCch
Q 005161 459 KILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDV 538 (711)
Q Consensus 459 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 538 (711)
++.+.. +.+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.+..+....+.+
T Consensus 660 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~- 736 (899)
T TIGR02917 660 RALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS- 736 (899)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-
Confidence 998764 3357788899999999999999999999998875 5677788888899999999999999999999887654
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005161 539 ISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIY 618 (711)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (711)
.++..++.++...|++++|.+.++.+.+.. +.+...+..+...|...|++++|..+|+++.+.. +++...++.+...+
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLY 814 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 677789999999999999999999998874 6778899999999999999999999999999863 66788999999999
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcchHHH
Q 005161 619 GEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEP-DKITYTNMITALQRNDKFLE 696 (711)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~ 696 (711)
...|+ .+|+.+++++.+. .|+ +.++..+..++...|++++|.+.++++.+. .| +..++..++.++.+.|++++
T Consensus 815 ~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--APEAAAIRYHLALALLATGRKAE 889 (899)
T ss_pred HhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHH
Confidence 99999 8899999999984 454 778889999999999999999999999984 45 67899999999999999999
Q ss_pred HHHHHHHHH
Q 005161 697 AIKWSLWMK 705 (711)
Q Consensus 697 A~~~~~~m~ 705 (711)
|.+++++|.
T Consensus 890 A~~~~~~~~ 898 (899)
T TIGR02917 890 ARKELDKLL 898 (899)
T ss_pred HHHHHHHHh
Confidence 999999986
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=6.2e-31 Score=292.07 Aligned_cols=655 Identities=10% Similarity=0.000 Sum_probs=403.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHH----------
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAY---------- 87 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------- 87 (711)
+-..++-+...++.+.|.+.++++.... +.++..+..+..++.+.|+.++|.+.++++.+.+|.+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 4455566677788888888888777654 44666777777777788888888888888888777664432
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 88 ------SAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLM 161 (711)
Q Consensus 88 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (711)
..++..+...|++++|++.|+.+.+.++.................|+.++|.+.++++.+.. +.+...+..+.
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA 188 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLA 188 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 33344667777777777777777665432111111111122223477777777777777764 33566667777
Q ss_pred HHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH-hhHHHHHHHHHcCCCH
Q 005161 162 TGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNA-SNLYTLINLHAKYEDE 240 (711)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 240 (711)
..+...|+.++|...|+++.+.. ... ...+...++.+...+..+.. ..+...+..+......
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~---~~~--------------~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~ 251 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSP---AGR--------------DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSV 251 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCC---Cch--------------HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHH
Confidence 77777777777777777775521 100 01111111111111111110 1111112222222223
Q ss_pred HHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 005161 241 EGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKR 320 (711)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 320 (711)
+.+...+.........+..........+...|++++|...|++++..+|. +..++..+...+.+.|++++|+..|++..
T Consensus 252 ~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 252 AAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444443333333322233455566667777777777777666555 56666777777777777777777777666
Q ss_pred hcCCCccH-hhH------------HHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 005161 321 WKDTVFED-NLY------------HLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYL 387 (711)
Q Consensus 321 ~~~~~~~~-~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (711)
..++.... ..| ......+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.|+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55433211 111 112334567778888888888877654 3455566667777778888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005161 388 NLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIE-------PDAYLYCDMLRIYQQCGMLDKLSYLYYKI 460 (711)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 460 (711)
++.+.. +.+...+..+...|. .++.++|+.+++.+....... -....+..+...+...|++++|.+.|++.
T Consensus 410 ~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A 487 (1157)
T PRK11447 410 QALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQR 487 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 877653 224455555655553 456777777776552211000 01123445566677788888888888887
Q ss_pred HhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-c--
Q 005161 461 LKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLV-D-- 537 (711)
Q Consensus 461 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-- 537 (711)
++.... +...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+...... .
T Consensus 488 l~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~ 565 (1157)
T PRK11447 488 LALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQ 565 (1157)
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHH
Confidence 776432 45566677777888888888888888877643 334444444444556677888888877765332211 1
Q ss_pred -------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005161 538 -------VISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYT 610 (711)
Q Consensus 538 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (711)
...+..++..+...|+.++|..+++. .+.+...+..+...+.+.|++++|+..++++.+.. +.+...
T Consensus 566 ~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a 639 (1157)
T PRK11447 566 ELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADA 639 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 11123455667788888888887762 35566677778888888888888888888888752 445677
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCC--CC---CcchHHHH
Q 005161 611 YNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGI--EP---DKITYTNM 684 (711)
Q Consensus 611 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l 684 (711)
+..++..+...|++++|.+.++++.+. .|+ ..++..+..++...|++++|.++++++....- .| +...+..+
T Consensus 640 ~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~ 717 (1157)
T PRK11447 640 RLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDA 717 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHH
Confidence 888888888888888888888877763 454 56667777888888888888888888876211 11 11345556
Q ss_pred HHHHHhcchHHHHHHHHHHHH
Q 005161 685 ITALQRNDKFLEAIKWSLWMK 705 (711)
Q Consensus 685 ~~~~~~~~~~~~A~~~~~~m~ 705 (711)
...+...|++++|+..+++..
T Consensus 718 a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 718 ARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 777888888888888888764
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.4e-29 Score=279.43 Aligned_cols=619 Identities=11% Similarity=0.008 Sum_probs=337.5
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhH----------------HHHHHHHHccCCHHHHHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATF----------------GMLMGLYKKSWNVEEAEFAFNQMR 77 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~~~ 77 (711)
|..++....+.+.+.|+.++|.+.++++.+.. +.+.... ..+.+.+...|++++|.+.|+.+.
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l 139 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLF 139 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHc
Confidence 56778888889999999999999999999875 3232222 334457889999999999999999
Q ss_pred HcCCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-
Q 005161 78 KLGLVCES-AYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIV- 155 (711)
Q Consensus 78 ~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 155 (711)
+.+|.+.. ............|+.++|++.++++.+..+. +...+..+...+...|+.++|...++++.+.... +..
T Consensus 140 ~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-~~~a 217 (1157)
T PRK11447 140 NGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-RDAA 217 (1157)
T ss_pred cCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-hHHH
Confidence 88776532 2222223334569999999999999987755 6677888999999999999999999998764211 110
Q ss_pred -------------------HHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 156 -------------------AYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELK 216 (711)
Q Consensus 156 -------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 216 (711)
.+...+..+-.......|...++........|+... ......+...|++++|...|++..
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 011111111111223334444443332211222111 122344555666666666666666
Q ss_pred hcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhH--------------HHHHHHHHHhcCCCCcHHHHHH
Q 005161 217 HLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSI--------------LGTLLQAYEKAGRTDNVPRILK 282 (711)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~a~~~~~ 282 (711)
+... .+...+..+..++.+.|++++|...|+++++..+..... .......+.+.|++++|...++
T Consensus 297 ~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 297 RANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5421 144555566666666666666666666666655543210 0112334445555555555555
Q ss_pred HhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCc
Q 005161 283 GSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPN 362 (711)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 362 (711)
+++..++. +..++..+...+...|++++|++.|++....++. +...+..+...+. .++.++|..+++.+........
T Consensus 376 ~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 376 QARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 55555443 4444555555555555555555555555544332 2223333333332 2344555555444322100000
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 005161 363 LHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLR 442 (711)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 442 (711)
... . . ......+..+...+...|++++|++.|++..+.. +.+...+..+..
T Consensus 453 ~~~------------------------~-~--~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~ 503 (1157)
T PRK11447 453 DDI------------------------E-R--SLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQ 503 (1157)
T ss_pred HHH------------------------H-H--HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 000 0 0 0001123334444444455555555554443321 112333444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccH---------HHHHHHHHH
Q 005161 443 IYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNI---------ITLNVMLDI 513 (711)
Q Consensus 443 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~ 513 (711)
.|.+.|++++|...++++.+.... +...+..+...+...++.++|+..++.+......++. ..+..+...
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 444455555555555444433211 2222222222333444455555444443221111111 111233455
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 005161 514 YGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFK 593 (711)
Q Consensus 514 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (711)
+...|+.++|.++++ ..+.++..+..+...+.+.|++++|+..|++..+.. |.+...+..++..+...|++++|.
T Consensus 583 l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 583 LRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 666777777777665 344455566667777777777777777777777653 445666667777777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC--CC---ChHhHHHHHHHHhccCChHHHHHHHHH
Q 005161 594 NVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGL--RP---DLCSYNTLIKAYGIAGMVEDAVGLVKE 668 (711)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 668 (711)
+.++.+.+. -+.+...+..+..++...|++++|.++++++....- .| +...+..+...+...|++++|+..|++
T Consensus 658 ~~l~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 658 AQLAKLPAT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777766653 123344555566666777777777777777765311 11 123455556667777777777777777
Q ss_pred HHH-cCCCC
Q 005161 669 MRE-NGIEP 676 (711)
Q Consensus 669 ~~~-~~~~p 676 (711)
... .|+.|
T Consensus 737 Al~~~~~~~ 745 (1157)
T PRK11447 737 AMVASGITP 745 (1157)
T ss_pred HHhhcCCCC
Confidence 652 34444
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=4e-26 Score=241.03 Aligned_cols=650 Identities=12% Similarity=-0.003 Sum_probs=445.6
Q ss_pred hHHHHHHHHH--hcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 17 LFNTLIYACN--KRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 17 ~~~~~l~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
++.-++.+.. ..|++++|...|+.+++.. |-+..++..|...|.+.|+.++|+..+++..+.+|.+...+..+..+
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i- 121 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI- 121 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-
Confidence 3334444433 3489999999999998876 44577788888889999999999999999999888665555554333
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHhh
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA--------YSQQGKLEEAELVLVSMREAGFSPNIVAYNTL-MTGYG 165 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~ 165 (711)
+++.+|..+++++....+. +..++..+... |.+. +.|.+.++ .......|++.+.... ...|.
T Consensus 122 ---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred ---ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHH
Confidence 8888999999998887655 45555555554 5444 55555555 3333334445544444 78888
Q ss_pred ccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHH
Q 005161 166 KVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGR-AGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAV 244 (711)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 244 (711)
+.|+++.|.+.+.++.+.++ .+......|...|.. .++ +++..+++. .++.++.....+...+...|+.+.|.
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 89999999999999988764 344546667777777 366 777777553 23357778888888999999999999
Q ss_pred HHHHHHHHCCCCChhHHHHHHHHHHhcCCCC-cHHHHHHHhhhccCCcc-hhHHHHHHHHHHhcCCHHHHHHHHHhhhhc
Q 005161 245 NTLDDMLNMGCQHSSILGTLLQAYEKAGRTD-NVPRILKGSLYQHVLFN-LTSCSILVMAYVKHGLIDDAMKVLGDKRWK 322 (711)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 322 (711)
.+++++....+..+.- ...+..+.+.+... .|..-|..- ..++ ......++..+.+.+.++.+.++..
T Consensus 268 ~~L~~~~~~~~~~~~~-~~~~~~l~r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 337 (987)
T PRK09782 268 HYLIENKPLFTTDAQE-KSWLYLLSKYSANPVQALANYTVQ----FADNRQYVVGATLPVLLKEGQYDAAQKLLA----- 337 (987)
T ss_pred HHHHhCcccccCCCcc-HHHHHHHHhccCchhhhccchhhh----hHHHHHHHHHHHHHHHHhccHHHHHHHHhc-----
Confidence 8888876554431100 11111133333322 111111110 0001 1123344788888888887776632
Q ss_pred CCCccHhhHHHHHHH--HHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-C-CCCCH
Q 005161 323 DTVFEDNLYHLLICS--CKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSS-G-IRLDL 398 (711)
Q Consensus 323 ~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~ 398 (711)
..|.... ..+.. ....+...++...+..|.+.. +-+......+.-.....|+.++|.++++..... + -.++.
T Consensus 338 -~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (987)
T PRK09782 338 -TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ 413 (987)
T ss_pred -CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence 2222222 12222 223466667777777776542 334555555555567888999999999888773 1 23344
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHH----------------------HHHHHhcCCC-CC--cHHHHHHHHHHHHHcCCH
Q 005161 399 IAFTVVVRMYVKAGS---LKDACAV----------------------LETMEKQKDI-EP--DAYLYCDMLRIYQQCGML 450 (711)
Q Consensus 399 ~~~~~l~~~~~~~~~---~~~A~~~----------------------~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~ 450 (711)
....-++..|.+.+. ..++..+ +.......+. ++ +...|..+..++.. ++.
T Consensus 414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc
Confidence 455567777777655 3333222 2222222222 33 56677777777766 788
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 005161 451 DKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMA 530 (711)
Q Consensus 451 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 530 (711)
++|...+.+..... |+......+...+...|++++|...|+++... +|+...+..+..++.+.|+.++|...++..
T Consensus 493 ~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 493 GVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred HHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999888877664 44444334455556899999999999988654 444445566677888899999999999999
Q ss_pred HHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005161 531 KKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYT 610 (711)
Q Consensus 531 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (711)
.+..+.....+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++..+.. +.+...
T Consensus 569 L~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a 645 (987)
T PRK09782 569 EQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNY 645 (987)
T ss_pred HhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 9887766666655656666779999999999999876 4568888889999999999999999999999863 456668
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHH
Q 005161 611 YNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK-ITYTNMITAL 688 (711)
Q Consensus 611 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~ 688 (711)
++.+...+...|++++|+..+++..+ ..|+ ...+..+..++...|++++|+..+++..+ +.|+. .+.....+..
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHH
Confidence 88888899999999999999999998 4565 78899999999999999999999999998 77875 6666777888
Q ss_pred HhcchHHHHHHHHHHHHHhC
Q 005161 689 QRNDKFLEAIKWSLWMKQIG 708 (711)
Q Consensus 689 ~~~~~~~~A~~~~~~m~~~g 708 (711)
.+..+++.|.+-+++.-...
T Consensus 722 ~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 722 QQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 88888888888777655433
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2.3e-25 Score=235.30 Aligned_cols=608 Identities=11% Similarity=0.009 Sum_probs=428.9
Q ss_pred HccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005161 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAEL 140 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 140 (711)
...|++++|+..|+++.+.+|.+..++..+...|...|++++|+..+++....++. |...+..+ . ..+++++|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~L-a---~i~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG-DARLERSL-A---AIPVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHH-H---HhccChhHHH
Confidence 34599999999999999999999899999999999999999999999999887642 44444333 2 2289999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH--------hhccCChHHHHHHHHHHHhcCCCCChhhHHHH-HHHHHhcCCHHHHHHH
Q 005161 141 VLVSMREAGFSPNIVAYNTLMTG--------YGKVSNMEAAQRLFLSIKDVGLEPDETTYRSM-IEGWGRAGNYREAKWY 211 (711)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~ 211 (711)
+++++.+.. +.+..++..+... |.+. ++|.+.++ .....+.|+....... ...|.+.|++++|+.+
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 999999875 3356666666665 5555 55555554 3333334444444444 8899999999999999
Q ss_pred HHHHHhcCCCccHhhHHHHHHHHHc-CCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCC
Q 005161 212 YKELKHLGYKPNASNLYTLINLHAK-YEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVL 290 (711)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (711)
+.++.+.+.. +......+..+|.. .++ +.+..+++...+ ....+...++..|.+.|+.+.|.+++++.....+.
T Consensus 205 L~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 205 YNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 9999998543 34446666667777 366 777777553222 34478889999999999999999999887654333
Q ss_pred -cchhHHHHHHHHHHhcCCHH-HHHHHHHhhhhcCCCccH-hhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHH
Q 005161 291 -FNLTSCSILVMAYVKHGLID-DAMKVLGDKRWKDTVFED-NLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMC 367 (711)
Q Consensus 291 -~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 367 (711)
|+..+|.-+ +.+.+... .|..-|.+ ...++. ...-.++..+.+.+.++.+.++.. +.|......
T Consensus 280 ~~~~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 346 (987)
T PRK09782 280 DAQEKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLE 346 (987)
T ss_pred CCccHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHH
Confidence 444444333 34444432 11111111 000110 112334677888898887776622 233322221
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHH
Q 005161 368 TMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEK-QKDIEPDAYLYCDMLRIYQQ 446 (711)
Q Consensus 368 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 446 (711)
.-.......+...++.+.+..+.... +-+......+.....+.|+.++|.++|+.... ......+......++..|.+
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 11222234466777777777777652 23666666666777889999999999998855 22233444555677888877
Q ss_pred cCC---HHHHHHH----------------------HHHHHhc-CC-CC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 447 CGM---LDKLSYL----------------------YYKILKS-GI-TW--NQELYDCVINCCARALPIDELSRVFDEMLQ 497 (711)
Q Consensus 447 ~~~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 497 (711)
.+. ...+..+ +...... +. ++ +...+..+..++.. ++.++|+..+.+...
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~ 504 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ 504 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 765 3333322 1111111 11 23 55667777776666 788899998888876
Q ss_pred CCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 005161 498 HGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYN 577 (711)
Q Consensus 498 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 577 (711)
. .|+......+...+...|++++|...++.+... +++...+..+..++.+.|++++|...+++..+.. +.....+.
T Consensus 505 ~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~ 580 (987)
T PRK09782 505 R--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYW 580 (987)
T ss_pred h--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHH
Confidence 5 355544444455557899999999999987665 3444556777888999999999999999998864 33444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhcc
Q 005161 578 SMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIA 656 (711)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 656 (711)
.+.......|++++|...+++..+. .|+...+..+...+.+.|++++|...+++.++. .|+ ...++.+..++...
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 4444455669999999999999984 578889999999999999999999999999984 676 77889999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcchHHHHHHHHHHHHHhC
Q 005161 657 GMVEDAVGLVKEMRENGIEPD-KITYTNMITALQRNDKFLEAIKWSLWMKQIG 708 (711)
Q Consensus 657 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 708 (711)
|++++|+..+++..+ +.|+ ...+..+..++...|++++|...+++..+..
T Consensus 657 G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 657 GDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999998 7785 5788899999999999999999999987654
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.7e-24 Score=209.18 Aligned_cols=562 Identities=12% Similarity=0.084 Sum_probs=429.7
Q ss_pred hHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 31 VELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC-ESAYSAMITIYTRLSLYEKAEEVIRL 109 (711)
Q Consensus 31 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 109 (711)
++.|...|...++.. ++|+..+..-..+....+++..|+.+|..+...+|.. +.....+..++.+.|+.+.|+..|++
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 578888888888764 5565555544555567889999999999999988875 56777788888999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCC
Q 005161 110 IREDKVVPNLENWLVMLNAYSQQ---GKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLE 186 (711)
Q Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (711)
+++.++. +..++..+...-... ..+..++.++...-... +.++.+.+.|...|.-.|+++.+..+...+......
T Consensus 225 alqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 225 ALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 9997753 444544443333333 33556666666665553 458888999999999999999999999998875321
Q ss_pred C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHH
Q 005161 187 P--DETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTL 264 (711)
Q Consensus 187 ~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 264 (711)
. -+..|..+.++|...|++++|..+|.+........-...+..+...+.+.|+++.+...|+.+.+..|....+...+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 1 23347889999999999999999999887753222234566788999999999999999999999999988999889
Q ss_pred HHHHHhcC----CCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhh----hhcCCCccHhhHHHHHH
Q 005161 265 LQAYEKAG----RTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDK----RWKDTVFEDNLYHLLIC 336 (711)
Q Consensus 265 ~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~ 336 (711)
...|...+ ..+.|..++.+.....+. |..+|-.+...+....-+.. +..+... ...+..+.+...|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 88888775 567788888888887766 88999998888876555444 6666543 34455577889999999
Q ss_pred HHHccCChhhHHHHHHHHhhc---CCCCcH------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHH
Q 005161 337 SCKDSGHLANAVKIYSHMHIC---DGKPNL------HIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLI-AFTVVVR 406 (711)
Q Consensus 337 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~ 406 (711)
.+...|+++.|...|...... ...++. .+--.+.......++++.|.+.|..+.+. .|... .|.-+..
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 999999999999999988654 122333 22334555667778999999999999886 34432 3333332
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHcc---
Q 005161 407 MYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSG-ITWNQELYDCVINCCARA--- 482 (711)
Q Consensus 407 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~--- 482 (711)
+-...+...+|...++.........| ..++.+...+.+...+..|.+-|....+.. ..+|+.+...|.+.|.+.
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d~~np--~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNIDSSNP--NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcccCCc--HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 33334778899999998876654444 455666778888888988988777776554 335777776777755432
Q ss_pred ---------CCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC
Q 005161 483 ---------LPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKN 553 (711)
Q Consensus 483 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 553 (711)
+..+.|+++|.++++.. |.|...-|.+.-+++..|++.+|..+|.+..+.......+|..+..+|...|+
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH
Confidence 45678999999988764 66888888888889999999999999999998877778899999999999999
Q ss_pred HHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005161 554 LESMSSTVQEMQFD-GFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET 602 (711)
Q Consensus 554 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (711)
+..|++.|+...+. ....+..+...|..++...|.+.+|...+......
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999987766 33456778889999999999999999998888764
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.3e-23 Score=201.93 Aligned_cols=681 Identities=13% Similarity=0.079 Sum_probs=446.0
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcC----CCCCHh---hHHHHHHHHHcc-----------CCHHHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECD----VQPNVA---TFGMLMGLYKKS-----------WNVEEAEFAFNQM 76 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~---~~~~l~~~~~~~-----------g~~~~A~~~~~~~ 76 (711)
.++|..+...|...|.+++...+++..+-.. -.++.. .+..|..-+... ..+..|..+|..+
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 6788899999999999999999888776211 011111 111222222121 1234566666666
Q ss_pred HHcCCCchhHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC
Q 005161 77 RKLGLVCESAYSAMITIYTRLSL--YEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAG--FSP 152 (711)
Q Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~ 152 (711)
...+......+..-...|...|. .+.|...|..+++..+. |.-.+..-+......+++-.|..+|+.+.... .+|
T Consensus 121 ~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~a 199 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKA 199 (1018)
T ss_pred HHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCC
Confidence 55554433333333333333443 47888888887776543 55454444444556788999999999876653 344
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCccHhhHHH
Q 005161 153 NIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGR---AGNYREAKWYYKELKHLGYKPNASNLYT 229 (711)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 229 (711)
|+. -.+..++.+.|+.+.|...|++..+.++ .++.++..|...-.. ...+..+..++...-..+ .-|+...+.
T Consensus 200 D~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~ 275 (1018)
T KOG2002|consen 200 DVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNH 275 (1018)
T ss_pred Ccc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHH
Confidence 443 2334566788899999999998887432 222222222221111 234556666666665442 336777888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCh---hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhc
Q 005161 230 LINLHAKYEDEEGAVNTLDDMLNMGCQHS---SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKH 306 (711)
Q Consensus 230 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (711)
|...+...|+++.+..+...+........ ..+..++++|...|+++.|...+......++..-...+.-+.+.+.+.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 88888888999999988888877653333 557788899999999999999998888776653355666788889999
Q ss_pred CCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccC----ChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHH
Q 005161 307 GLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSG----HLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEA 382 (711)
Q Consensus 307 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 382 (711)
|+++.+...|+.+....+. +..+...+...|...+ ..+.|..++....+.. +.|...|..+...+...+-+..
T Consensus 356 ~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s- 432 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS- 432 (1018)
T ss_pred chHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-
Confidence 9999999999888776654 4456666666666554 4566667776666543 5577778777776665544433
Q ss_pred HHHHHHHH----hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCCcH------HHHHHHHHHHHHcCCH
Q 005161 383 EKLYLNLK----SSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKD--IEPDA------YLYCDMLRIYQQCGML 450 (711)
Q Consensus 383 ~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~~~~ 450 (711)
+..|..+. ..+..+.+...|.+...+...|+++.|...|+....... ..++. .+--.+..+.-..++.
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 66665443 344457788889999999999999999999887744311 11222 2233345556667788
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 005161 451 DKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMA 530 (711)
Q Consensus 451 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 530 (711)
+.|.+.|..+.+..+. -...|..++......++..+|...+...+..+ ..++..++.+...+.....+..|.+-|..+
T Consensus 513 ~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 513 EVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 8899999888876321 12233333323334467788888888887643 344555555666777788888888877766
Q ss_pred HHcCC--CchhHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 005161 531 KKLGL--VDVISYNTIIAAYGQ------------NKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVL 596 (711)
Q Consensus 531 ~~~~~--~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 596 (711)
.+... +|..+...|...|.. .+..++|++.|.+..+.. |.+...-|-+.-.++..|++++|..+|
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHH
Confidence 65443 456666666665532 234567888888877764 667777777888888889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC-CCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 005161 597 RRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGL-RPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIE 675 (711)
Q Consensus 597 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 675 (711)
.+..+.. .....+|-.+.++|..+|++..|+++|+...+.-. ..+..+.+.|.+++...|.+.+|.+.+..... ..
T Consensus 670 sqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~ 746 (1018)
T KOG2002|consen 670 SQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LA 746 (1018)
T ss_pred HHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hC
Confidence 9888763 34556788888999999999999999988776433 33477888889999999999999888888776 55
Q ss_pred CCc--chHHHHHHHH------------------HhcchHHHHHHHHHHHHHhCc
Q 005161 676 PDK--ITYTNMITAL------------------QRNDKFLEAIKWSLWMKQIGL 709 (711)
Q Consensus 676 p~~--~~~~~l~~~~------------------~~~~~~~~A~~~~~~m~~~g~ 709 (711)
|.. ..++..+... ...+..++|.++|.+|...+-
T Consensus 747 p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 747 PSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred CccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 532 2222221111 112456778888888776654
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=2.2e-23 Score=194.59 Aligned_cols=434 Identities=15% Similarity=0.136 Sum_probs=312.2
Q ss_pred CCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 005161 238 EDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLG 317 (711)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 317 (711)
|++.+|++....+-..++...+....+...+.+..+.+.....-...+...+. -..+|+.+.+.+-..|++++|+.+++
T Consensus 62 gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~kerg~~~~al~~y~ 140 (966)
T KOG4626|consen 62 GDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKERGQLQDALALYR 140 (966)
T ss_pred cCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 34444443333333333333333333333344444444433333333333333 34566666666666677777777666
Q ss_pred hhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHH-HHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 005161 318 DKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMC-TMIDTYSVMGMFTEAEKLYLNLKSSGIRL 396 (711)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 396 (711)
.+.+..+. ....|..+..++...|+.+.|.+.|...++. .|+..... .+.......|++.+|...|.+.++.. +.
T Consensus 141 ~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~ 216 (966)
T KOG4626|consen 141 AAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PC 216 (966)
T ss_pred HHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-Cc
Confidence 66655544 3445666666777777777777777666653 34443332 23333445677778877777777652 12
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 005161 397 DLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD-AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCV 475 (711)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 475 (711)
=..+|..|...+...|+...|++.|++..+. .|+ ...|-.|...|...+.++.|...+.+..... +.....+..+
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNl 292 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNL 292 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhccce
Confidence 2356777777777788888888888777543 333 4567777778888888888888887776653 2245667777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCH
Q 005161 476 INCCARALPIDELSRVFDEMLQHGFTPN-IITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNL 554 (711)
Q Consensus 476 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 554 (711)
...|...|.++-|+..|++.++. .|+ ...|+.|..++-..|+..+|.+.+.+.....+....+.+.|...|...|.+
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 77888899999999999999876 344 667899999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHH
Q 005161 555 ESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDH-YTYNIMIDIYGEQGWINEVVGVLTE 633 (711)
Q Consensus 555 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (711)
++|..+|....+-. +.-....+.|...|-+.|++++|...+++.++ +.|+- ..++.+...|-..|+.+.|.+.+.+
T Consensus 371 e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 371 EEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred hHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 99999999988752 34456778899999999999999999999987 57764 5899999999999999999999999
Q ss_pred HHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHH
Q 005161 634 LKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK-ITYTNMITALQ 689 (711)
Q Consensus 634 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 689 (711)
.+. +.|. ...++.|...|..+|+..+|+..|++..+ ++||. ..+..++.++.
T Consensus 448 AI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 448 AIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 998 6787 78899999999999999999999999998 88985 56666666554
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.1e-22 Score=190.01 Aligned_cols=433 Identities=16% Similarity=0.128 Sum_probs=346.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC
Q 005161 19 NTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS 98 (711)
Q Consensus 19 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 98 (711)
..+.+-..+.|++.+|++.-...-+++ +.+......+-..+.+..+++....--....+.+++..++|..+.+++-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 345556667888888888666555543 3344444444556667777777776666677778888899999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHhhccCChHHHHHHH
Q 005161 99 LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAY-NTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~ 177 (711)
++++|+..++.+.+..+. ....|..+..++...|+.+.|.+.|.+.++. .|+.... +.+...+...|+.++|...|
T Consensus 131 ~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999999887655 6788999999999999999999999999886 4554433 33444445578999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 005161 178 LSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPN-ASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ 256 (711)
Q Consensus 178 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 256 (711)
.+..+..+ -=.+.|+.|...+-.+|+...|++.|++.... .|+ ...|..+...|...+.+++|...+.+.....|.
T Consensus 208 lkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 208 LKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence 88877542 23566888888888999999999999998875 444 567888899999999999999999999998888
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHH
Q 005161 257 HSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLIC 336 (711)
Q Consensus 257 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 336 (711)
...++..++..|...|..|-|...+++.++..|. =..+|+.|..++-..|++.+|.+.+.+...-.+. ...+.+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHH
Confidence 8888899999999999999999999999988776 4678999999999999999999999888766554 4457788889
Q ss_pred HHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChH
Q 005161 337 SCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLD-LIAFTVVVRMYVKAGSLK 415 (711)
Q Consensus 337 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 415 (711)
.+...|.++.|..+|+....-. +.-...++.+...|-.+|++++|...|++.+.- .|+ ...|+.+...|-..|++.
T Consensus 363 i~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHH
Confidence 9999999999999999887642 223457888888999999999999999998874 455 467888888899999999
Q ss_pred HHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005161 416 DACAVLETMEKQKDIEPD-AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGIT 466 (711)
Q Consensus 416 ~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 466 (711)
.|++.+.+.+.. .|. ...++.|...|...|++.+|+.-++..++....
T Consensus 440 ~A~q~y~rAI~~---nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 440 AAIQCYTRAIQI---NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHHHHHhc---CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999887553 343 567888999999999999999999998887544
No 17
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.93 E-value=5.2e-18 Score=160.02 Aligned_cols=610 Identities=12% Similarity=0.060 Sum_probs=483.2
Q ss_pred CCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005161 64 WNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLV 143 (711)
Q Consensus 64 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 143 (711)
+|+..|..+++.+.+.+|.++..|.+-.+.--..|++..|..+...=.+.-+. +...|...+ +....+.|..+..
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cpr-SeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPR-SEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCc-hHHHHHHHH----hcCChHHHHHHHH
Confidence 47788999999999999999999999999999999999999988765554443 556664443 5667777888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc
Q 005161 144 SMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPN 223 (711)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 223 (711)
..++. ++.++..|..-... ..+...-.+++.+..+. ++.+...|-.. +...+.+.|.-++.+..+. ++..
T Consensus 340 ~Avr~-~P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvec-cp~s 409 (913)
T KOG0495|consen 340 NAVRF-LPTSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVEC-CPQS 409 (913)
T ss_pred HHHHh-CCCChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHh-ccch
Confidence 88876 34455555444332 23344445666666664 23455556544 4556777798888888875 2222
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhh----ccCCcchhHHHHH
Q 005161 224 ASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLY----QHVLFNLTSCSIL 299 (711)
Q Consensus 224 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l 299 (711)
.. |.-++++..-++.|..+++...+.-|....++......-...|..+...+++.+.+. .++..+...|..=
T Consensus 410 ~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 410 MD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 22 344566677889999999999998888888888888888889999999988876543 4666788888888
Q ss_pred HHHHHhcCCHHHHHHHHHhhhhcCCCcc--HhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccC
Q 005161 300 VMAYVKHGLIDDAMKVLGDKRWKDTVFE--DNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMG 377 (711)
Q Consensus 300 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 377 (711)
...+-..|..-.+..+......-|+.-. ..+|..-...|.+.+.++-|..+|...++.. +.+...|......--..|
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcC
Confidence 8888888888888888887766665433 3578888999999999999999999998763 556777888877777889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005161 378 MFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLY 457 (711)
Q Consensus 378 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 457 (711)
..+....++++.... ++-....|......+...|++..|..++....... +.+...|..-+.....+..++.|..+|
T Consensus 565 t~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred cHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 999999999999886 34456677777888888999999999999886543 346678888888889999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCc
Q 005161 458 YKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVD 537 (711)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 537 (711)
.+.... .|+..+|..-+...--.++.++|++++++.++. ++.-...|..+.+.+-+.++.+.|.+.|..-.+..|..
T Consensus 642 akar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 642 AKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred HHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 988775 567777777777777789999999999999876 34445677788889999999999999999888888889
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005161 538 VISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDI 617 (711)
Q Consensus 538 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (711)
...|..+...--+.|++-+|..++++..-.+ |.+...|...+..-.+.|..+.|..+..+.+.. ++.+...|...|..
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWL 796 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHh
Confidence 9999999999999999999999999998776 778889999999999999999999999988875 56677788888888
Q ss_pred HhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhcchHHH
Q 005161 618 YGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK-ITYTNMITALQRNDKFLE 696 (711)
Q Consensus 618 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~ 696 (711)
..+.++-......+++ +.-|+...-.+...+....++++|.+.|.+..+ +.||. .+|..+.+.+.++|.-++
T Consensus 797 e~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred ccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHH
Confidence 7777765555444443 466778888888888899999999999999998 67875 789999999999998888
Q ss_pred HHHHHHHHHHhC
Q 005161 697 AIKWSLWMKQIG 708 (711)
Q Consensus 697 A~~~~~~m~~~g 708 (711)
-.+++++.....
T Consensus 870 ~kev~~~c~~~E 881 (913)
T KOG0495|consen 870 QKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHhccC
Confidence 888888765543
No 18
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=4.8e-18 Score=166.88 Aligned_cols=673 Identities=12% Similarity=0.055 Sum_probs=392.0
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMIT 92 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 92 (711)
|.+...-.....+.-+|++++|.+++.+.++.. +.+...|..|..+|-..|+.+.+...+-.+--.+|.+...|..+..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 434445555556666799999999999999986 6788899999999999999999999988888888888899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHhhccC
Q 005161 93 IYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYN----TLMTGYGKVS 168 (711)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~ 168 (711)
...+.|++.+|.-.|.++++.++. +...+-.-+..|-+.|+...|.+.|.++.+..++.|..-.. ..+..+...+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999887654 44455566778888999999999999999875432322222 2345566677
Q ss_pred ChHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHH
Q 005161 169 NMEAAQRLFLSIKDV-GLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTL 247 (711)
Q Consensus 169 ~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 247 (711)
+-+.|.+.++..... +-..+...++.++..+.+...++.|......+.....++|..-+.+--. +. .-.
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~-----~~-----~~~ 364 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER-----RR-----EEP 364 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh-----cc-----ccc
Confidence 778888888876652 2234555678888889999999999988888776433333322210000 00 000
Q ss_pred HHHHHCC--CCCh-hHHHHHHHHHHhcCCCCcHHHHHHHhhhcc--CCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhc
Q 005161 248 DDMLNMG--CQHS-SILGTLLQAYEKAGRTDNVPRILKGSLYQH--VLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWK 322 (711)
Q Consensus 248 ~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 322 (711)
.-....+ ...+ .+ -.+.-++...+..+....+.......+ +.-+...+.-+..+|...|++.+|+++|..+...
T Consensus 365 ~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred cccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 0000000 0000 11 112222222222222222222222222 2223444555555555555555555555555544
Q ss_pred CCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh--------CCC
Q 005161 323 DTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKS--------SGI 394 (711)
Q Consensus 323 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~ 394 (711)
...-+...|-.+..+|...|..+.|++.|+..+... +.+...-..+...+.+.|+.++|.+.+..+.. .+.
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 443344455555555555555555555555554432 22333334444445555555555555555321 112
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CC-----------------CCCcHHHHHHHHHHHHHcCCHHHH
Q 005161 395 RLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQ----KD-----------------IEPDAYLYCDMLRIYQQCGMLDKL 453 (711)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-----------------~~~~~~~~~~l~~~~~~~~~~~~a 453 (711)
.|+..........+.+.|+.++-+.+-..|... .- ..........++.+-.+.++....
T Consensus 523 ~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 523 EPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHh
Confidence 233333334444455555544433322222110 00 111112222223333333222111
Q ss_pred HHH------HHHHHhcCCCCCh--hhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CccH---HHHHHHHHHHhccCcH
Q 005161 454 SYL------YYKILKSGITWNQ--ELYDCVINCCARALPIDELSRVFDEMLQHGF--TPNI---ITLNVMLDIYGKAKLF 520 (711)
Q Consensus 454 ~~~------~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~ 520 (711)
..- +..-...++..+. ..+..++.+.++.+..++|..+...+..... .++. ..-...+.+....+++
T Consensus 603 ~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~ 682 (895)
T KOG2076|consen 603 EKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDP 682 (895)
T ss_pred hhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCH
Confidence 111 1111122222222 2456677788899999999999888875421 1222 2234455667789999
Q ss_pred HHHHHHHHHHHHc-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 005161 521 KRVRKLFSMAKKL-----GLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNV 595 (711)
Q Consensus 521 ~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (711)
..|...+..+... .+.-...|+.......+.++-..-..++..+......-++..+..........+.+..|...
T Consensus 683 ~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~ 762 (895)
T KOG2076|consen 683 GDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQE 762 (895)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHH
Confidence 9999999988877 44455667766666666666554444444444332222233333344555678899999998
Q ss_pred HHHHHHcCCCCCHHHHHHHH-HHHhh----------cCCHHHHHHHHHHHHHCCCC-CChHhHHHHHHHHhccCChHHHH
Q 005161 596 LRRMKETSCTFDHYTYNIMI-DIYGE----------QGWINEVVGVLTELKECGLR-PDLCSYNTLIKAYGIAGMVEDAV 663 (711)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~-~~~~~----------~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~ 663 (711)
+-++... .|+....+.++ .++.. .-.+-+++.++.+..+.... -...++..+.++|-..|-+.-|.
T Consensus 763 y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~ 840 (895)
T KOG2076|consen 763 YMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAV 840 (895)
T ss_pred HHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHH
Confidence 8888764 56644444333 22211 11244677777777663222 13567778899999999999999
Q ss_pred HHHHHHHHcCCCCC-------------cchHHHHHHHHHhcchHHHHHHHHHH
Q 005161 664 GLVKEMRENGIEPD-------------KITYTNMITALQRNDKFLEAIKWSLW 703 (711)
Q Consensus 664 ~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~ 703 (711)
.+|++.+. +.|- ...-..|.-.|..+|+...|..++++
T Consensus 841 ~YYekvL~--~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 841 SYYEKVLE--VSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHhC--CCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 99999986 4321 11223344568899999999998764
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=3e-19 Score=186.81 Aligned_cols=360 Identities=11% Similarity=-0.025 Sum_probs=208.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL 97 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (711)
+...-..+...|+++.|+..|+.+++. .|+...|..+..+|.+.|++++|++.+..+.+.+|....+|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445667788899999999999999875 567788888889999999999999999999999998888999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
|++++|+..|..+...+...+. ....++..+.. ..+........+.. +++...+..+...+ ..........-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhhh
Confidence 9999999888776554322121 11222222211 12223333333332 22222222222221 111111111112
Q ss_pred HHHHhcCCCCCh-hhHHHHHHHH---HhcCCHHHHHHHHHHHHhcC-CCc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005161 178 LSIKDVGLEPDE-TTYRSMIEGW---GRAGNYREAKWYYKELKHLG-YKP-NASNLYTLINLHAKYEDEEGAVNTLDDML 251 (711)
Q Consensus 178 ~~~~~~~~~~~~-~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 251 (711)
+...+. .++. ..+..+...+ ...+.+++|...|++..+.+ ..| ....+..+...+...|++++|...+++.+
T Consensus 281 ~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 211111 1111 1111111111 22467888888888887754 223 33456666677777888888888888888
Q ss_pred HCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhH
Q 005161 252 NMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLY 331 (711)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 331 (711)
+..|.....+..++..+...|++++|...++.++..++. +..+|..+...+...|++++|+..|++....++. +...+
T Consensus 359 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~ 436 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSH 436 (615)
T ss_pred HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHH
Confidence 777665566666666666667777777766666665544 4556666666666666666666666655544332 22333
Q ss_pred HHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 332 HLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKS 391 (711)
Q Consensus 332 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 391 (711)
..+...+.+.|++++|+..|+..++.. +.+...++.+...+...|++++|.+.|+....
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 444444444555555555555444321 22334444444444445555555555544444
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=8.3e-20 Score=189.73 Aligned_cols=361 Identities=9% Similarity=-0.025 Sum_probs=196.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKL 135 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 135 (711)
++..+.+.|+++.|+.+++.+....|.+..++..++.++...|++++|...++++....+. +...+..+...+.+.|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCH
Confidence 4444555666666666666666666655555555555556666666666666666555433 444555555566666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 136 EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKEL 215 (711)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 215 (711)
++|...++++.+.. +.+...+..++..+...|++++|...++.+....+.+ ...+..+ ..+...|++++|...++.+
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 66666666665542 2344555555666666666666666666554433211 2222222 2345556666666666665
Q ss_pred HhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCc----HHHHHHHhhhccCCc
Q 005161 216 KHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDN----VPRILKGSLYQHVLF 291 (711)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~ 291 (711)
......++......+...+...|++++|...++++.+..+.....+..++..+...|++++ |...++.++...|.
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~- 282 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD- 282 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-
Confidence 5443222333333344555566666666666666666655555556666666666666654 56666666665554
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcH-HHHHHHH
Q 005161 292 NLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNL-HIMCTMI 370 (711)
Q Consensus 292 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 370 (711)
+..++..+...+...|++++|...+++....++. +...+..+...+.+.|++++|+..++.+.... |+. ..+..+.
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a 359 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAA 359 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHH
Confidence 5556666666666666666666666666555433 33345555566666666666666666665542 222 2233334
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHH
Q 005161 371 DTYSVMGMFTEAEKLYLNLKSSGIRLDLI----AFTVVVRMYVKAGSLKDACAVLETM 424 (711)
Q Consensus 371 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~ 424 (711)
.++...|+.++|...|+...+........ +...+-.++...+...+......++
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~ 417 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEV 417 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHH
Confidence 45566666666666666665542221122 2233333344444454444444444
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=5.2e-19 Score=184.99 Aligned_cols=428 Identities=11% Similarity=-0.047 Sum_probs=293.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHh
Q 005161 226 NLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVK 305 (711)
Q Consensus 226 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (711)
.+......+...|+++.|...|++.++..+. ...+..+..+|.+.|++++|...++.++..++. +..++..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 4556777888899999999999999888775 457778888899999999999999998887766 67788888999999
Q ss_pred cCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 005161 306 HGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKL 385 (711)
Q Consensus 306 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 385 (711)
.|++++|+.-|......+...+. ....++..... ..+........+.. +++...+..+.. +...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 99999998887665444322111 12222222111 12222233332221 222222222222 2111111111111
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHH---HHcCChHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005161 386 YLNLKSSGIRLDL-IAFTVVVRMY---VKAGSLKDACAVLETMEKQKDIEP-DAYLYCDMLRIYQQCGMLDKLSYLYYKI 460 (711)
Q Consensus 386 ~~~~~~~~~~~~~-~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 460 (711)
+....+. .+.. ..+..+...+ ...+++++|.+.|+.........| ....+..+...+...|++++|...+++.
T Consensus 280 ~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2211111 1111 1111111111 224678899999988865433333 4456777788888899999999999988
Q ss_pred HhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhH
Q 005161 461 LKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVIS 540 (711)
Q Consensus 461 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 540 (711)
+.... .....+..+...+...|++++|+..|+++++.. +.+...+..+...+...|++++|...|+......|.+...
T Consensus 358 l~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 358 IELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred HHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 87642 235567777888888899999999999888763 4456778888888888999999999999999888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-H-------HHH
Q 005161 541 YNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDH-Y-------TYN 612 (711)
Q Consensus 541 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~-------~~~ 612 (711)
+..+...+.+.|++++|+..+++..+.. +.+...++.+...+...|++++|...|++..+. .|+. . .++
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHH
Confidence 8888888999999999999999888753 556778888888899999999999999998864 2221 1 112
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 613 IMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
.....+...|++++|.+++++.++. .|+ ...+..++.++...|++++|++.|++..+
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2222334468899999999988874 455 55788888999999999999999999876
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=2.4e-19 Score=186.31 Aligned_cols=334 Identities=11% Similarity=0.028 Sum_probs=273.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL 97 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (711)
...++..+.+.|++.+|..+++..+... +-+...+..++.++...|+++.|...|+++.+.+|....++..+...+.+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 3456778889999999999999998875 334555566667777899999999999999999999888999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
|++++|...++++....+. +...+..++..+...|++++|...++.+....+. +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 9999999999999886544 5677888889999999999999999988776433 33444333 3477889999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHH----HHHHHHHHHHC
Q 005161 178 LSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEG----AVNTLDDMLNM 253 (711)
Q Consensus 178 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~ 253 (711)
+.+.+....++...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++ |...++++.+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 998775443444555566778889999999999999998864 2356677788889999999885 89999999999
Q ss_pred CCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHH
Q 005161 254 GCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHL 333 (711)
Q Consensus 254 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 333 (711)
.|.....+..++..+...|++++|...++.++..+|. +...+..+...+.+.|++++|+..|+.+...++. +...+..
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~ 357 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRY 357 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHH
Confidence 8888889999999999999999999999999988777 6778888999999999999999999988876544 2233444
Q ss_pred HHHHHHccCChhhHHHHHHHHhhcC
Q 005161 334 LICSCKDSGHLANAVKIYSHMHICD 358 (711)
Q Consensus 334 l~~~~~~~~~~~~a~~~~~~~~~~~ 358 (711)
+..++...|+.++|...|+...+..
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5667888999999999999987753
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2e-20 Score=186.30 Aligned_cols=304 Identities=11% Similarity=0.100 Sum_probs=213.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHHc
Q 005161 370 IDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEP--DAYLYCDMLRIYQQC 447 (711)
Q Consensus 370 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 447 (711)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+.......+ ....+..+...|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334567788888999998888864 23556788888888888889899888888855322211 124567777888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc----HHHHHHHHHHHhccCcHHHH
Q 005161 448 GMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPN----IITLNVMLDIYGKAKLFKRV 523 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 523 (711)
|+++.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888887653 33566777778888888888888888888776542221 12334555666777888888
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005161 524 RKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETS 603 (711)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (711)
...++++.+..+.+...+..++..+.+.|++++|.++++++...+......+++.++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 8888877776666666777777777778888888888777776532222455667777777777888887777777764
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhc---cCChHHHHHHHHHHHHcCCCCCcc
Q 005161 604 CTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGI---AGMVEDAVGLVKEMRENGIEPDKI 679 (711)
Q Consensus 604 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 679 (711)
.|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++..+++|.+.++.|++.
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 455555667777777777777888777777763 5776677766665553 457777777777777766666654
No 24
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=6.4e-16 Score=146.21 Aligned_cols=578 Identities=10% Similarity=0.030 Sum_probs=453.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
++..+|..++..+.+.++. ++..|.+-.+.--..|++..|..+...--+. ++.+..+|-.-+ +....+.|..+.
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHH
Confidence 5678899999999888866 5666766666666678888887776654443 345666665444 345677788887
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 005161 178 LSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQH 257 (711)
Q Consensus 178 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 257 (711)
......- +.++..|--.+.. ..+...-..++++..+. ++.+...| .+.....+.+.|+-++.++.+.-|.+
T Consensus 339 A~Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LW----KaAVelE~~~darilL~rAveccp~s 409 (913)
T KOG0495|consen 339 ANAVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLW----KAAVELEEPEDARILLERAVECCPQS 409 (913)
T ss_pred HHHHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHH----HHHHhccChHHHHHHHHHHHHhccch
Confidence 7777643 2334444322221 22333445566666664 22233333 34445666777999999999877776
Q ss_pred hhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHh----hhhcCCCccHhhHHH
Q 005161 258 SSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGD----KRWKDTVFEDNLYHL 333 (711)
Q Consensus 258 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~~ 333 (711)
...+..+ .+..-++.|.+++.++.+.-|. +...|.+-...--.+|+.+...+++.+ +...|+..+...|-.
T Consensus 410 ~dLwlAl----arLetYenAkkvLNkaRe~ipt-d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 410 MDLWLAL----ARLETYENAKKVLNKAREIIPT-DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHhhCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 6655544 4455678899999988776555 889999888888899999999888765 556788888889988
Q ss_pred HHHHHHccCChhhHHHHHHHHhhcCCCC--cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 005161 334 LICSCKDSGHLANAVKIYSHMHICDGKP--NLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKA 411 (711)
Q Consensus 334 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (711)
=...|-..|..-.+..+....+.-|+.. -..+|..-.+.|.+.+.++-+..+|...++- ++.+...|......--..
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhc
Confidence 8889999999999999999988777643 3468999999999999999999999999886 455777888887777778
Q ss_pred CChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 005161 412 GSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRV 491 (711)
Q Consensus 412 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 491 (711)
|..+.-..+|++..... +.....|......+...|+...|..++....+.... +..++...+.....+.++++|..+
T Consensus 564 gt~Esl~Allqkav~~~--pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQC--PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred CcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHH
Confidence 99999999999987653 445566777778888899999999999999988655 788899999999999999999999
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005161 492 FDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSV 571 (711)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 571 (711)
|.+.... .|+...|.--+..---.++.++|.++++...+..+.-...|..+.+.+-+.++.+.|.+.|..-.+. +|.
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~ 717 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPN 717 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCC
Confidence 9998875 5677777666666666899999999999999999888999999999999999999999999887665 567
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 005161 572 SLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIK 651 (711)
Q Consensus 572 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 651 (711)
.+..|..+...-.+.|..-.|..++++..-.+ +.+...|-..|.+-.+.|+.+.|..+..+..+. ++.+...|..-|+
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~ 795 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIW 795 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHH
Confidence 77888888888889999999999999998664 667889999999999999999999999998885 4555778888888
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHHHHHHHhCc
Q 005161 652 AYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709 (711)
Q Consensus 652 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 709 (711)
..-+.++-.+....+++ ..-|+.+...+...+....+++.|.+||++..+.+.
T Consensus 796 le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 796 LEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred hccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 88777776666665555 456888888999999999999999999999887654
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=1.9e-18 Score=183.82 Aligned_cols=410 Identities=10% Similarity=0.019 Sum_probs=295.6
Q ss_pred CCCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHH
Q 005161 10 GAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSA 89 (711)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 89 (711)
..+.+.....-.+......|+.++|++++..+.... +.+...+..+..++.+.|++++|..+|+.+.+..|.+..++..
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 88 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRG 88 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 445677777888889999999999999999998733 4566678889999999999999999999999999988888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC
Q 005161 90 MITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSN 169 (711)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (711)
++.++...|++++|+..++++....+. +.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999887644 555 8888889999999999999999999975 3366667778888888899
Q ss_pred hHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHhc-CCCccHh-hH----HH
Q 005161 170 MEAAQRLFLSIKDVGLEPDE------TTYRSMIEGWG-----RAGNY---REAKWYYKELKHL-GYKPNAS-NL----YT 229 (711)
Q Consensus 170 ~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~ 229 (711)
.+.|.+.++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999999987664 2331 11222222222 12234 6788888888754 2233221 11 11
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCC-ChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCc---chhHHHHHHHHHHh
Q 005161 230 LINLHAKYEDEEGAVNTLDDMLNMGCQ-HSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLF---NLTSCSILVMAYVK 305 (711)
Q Consensus 230 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 305 (711)
.+..+...|+.++|+..|+.+.+.++. |......+...+...|++++|...++.++..++.. .......+..++..
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 133445678999999999999887654 44444556788889999999999999887665432 13445666667888
Q ss_pred cCCHHHHHHHHHhhhhcCCC-----------ccH---hhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHH
Q 005161 306 HGLIDDAMKVLGDKRWKDTV-----------FED---NLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMID 371 (711)
Q Consensus 306 ~g~~~~a~~~~~~~~~~~~~-----------~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 371 (711)
.|++++|..+++.+....+. |+. ..+..+...+...|+.++|++.++++.... +.+...+..+..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 89999999988887765431 221 233445556667777777777777776553 445666666777
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 005161 372 TYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQK 428 (711)
Q Consensus 372 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 428 (711)
.+...|++++|++.++.+.... +.+...+......+...|++++|..+++.+.+..
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 7777777777777777777653 2234555556666677777777777777776543
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=1.4e-16 Score=156.71 Aligned_cols=640 Identities=15% Similarity=0.099 Sum_probs=414.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKL 135 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 135 (711)
..+.+...|++++|++++..+.+.+|....+|..|..+|-+.|+.+++...+-.+--.++. |..-|..+.....+.|.+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccH
Confidence 3344445599999999999999999999999999999999999999999888766555544 668899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHH----HHHHHHhcCCHHHHHHH
Q 005161 136 EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRS----MIEGWGRAGNYREAKWY 211 (711)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~ 211 (711)
+.|.-.+.++++.. +++....-.-+..|-+.|+...|..-|.++....+..|..-... .++.+...++.+.|++.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999986 44555555667788899999999999999988654333333333 34556667777999999
Q ss_pred HHHHHhcC-CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCC
Q 005161 212 YKELKHLG-YKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVL 290 (711)
Q Consensus 212 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 290 (711)
++.....+ -..+...++.++..+.+...++.+.............+++.-. ..... ++ ..-..++ -...+..
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~---~~~~~-~~-~~~~~~~--~~~~~~s 375 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW---DTDER-RR-EEPNALC--EVGKELS 375 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh---hhhhh-cc-ccccccc--cCCCCCC
Confidence 98887632 2234456778888888888888887776666553222220000 00000 00 0000000 0111222
Q ss_pred cchhH-HHHHHHHHHhcCCHHHHHHHHHhhhhcC--CCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHH
Q 005161 291 FNLTS-CSILVMAYVKHGLIDDAMKVLGDKRWKD--TVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMC 367 (711)
Q Consensus 291 ~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 367 (711)
++..+ ...+.-...+.+...+++ .......+ +.-+...|..+..++...|++..|+.+|..+.....-.+...|-
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~l--l~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEAL--LHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHH--HHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 33333 222222233344444444 44444444 44455678899999999999999999999998876666788999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-------cCCCCCcHHHHHHH
Q 005161 368 TMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEK-------QKDIEPDAYLYCDM 440 (711)
Q Consensus 368 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~l 440 (711)
.+..+|...|..++|.+.|..+.... +.+..+-.+|...+-+.|+.++|.+.+..+.. .....|+.......
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 99999999999999999999999863 33556667788889999999999999998631 12234455555556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC----------------------CCCChhhHHHHHHHHHccCCHHHHHHH------H
Q 005161 441 LRIYQQCGMLDKLSYLYYKILKSG----------------------ITWNQELYDCVINCCARALPIDELSRV------F 492 (711)
Q Consensus 441 ~~~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~------~ 492 (711)
...+.+.|+.++-...-..|+... ..........++.+-.+.++......- +
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~ 612 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEF 612 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhh
Confidence 667778888777544444433211 111222223333333333332221111 1
Q ss_pred HHHHhCCCCccH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--Cchh----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 493 DEMLQHGFTPNI--ITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL--VDVI----SYNTIIAAYGQNKNLESMSSTVQEM 564 (711)
Q Consensus 493 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~ 564 (711)
.....+++..+. ..+..++...++.+.+++|..+...+..... .+.. .-...+.+....+++..|...++.+
T Consensus 613 ~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 613 RAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSV 692 (895)
T ss_pred hhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 111123333222 2445567788899999999999998877665 2222 2345566778899999999999998
Q ss_pred HHC-CC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC
Q 005161 565 QFD-GF---SVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLR 640 (711)
Q Consensus 565 ~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (711)
... +. +--...|+.......+.++----.+.+..+....-..++.......+.....+.+..|+..+-++-. ..
T Consensus 693 i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~ 770 (895)
T KOG2076|consen 693 ITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QN 770 (895)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hC
Confidence 876 11 2234456655566666665544445555444321111223333333445667889999998877766 46
Q ss_pred CChHhHHHHH-HHHh----------ccCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcchHHHHHHHHHHHHHhC
Q 005161 641 PDLCSYNTLI-KAYG----------IAGMVEDAVGLVKEMRENGIEP-DKITYTNMITALQRNDKFLEAIKWSLWMKQIG 708 (711)
Q Consensus 641 p~~~~~~~l~-~~~~----------~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 708 (711)
|+...++.++ .++. ++-..-.++.++++..+....- .......++++|...|=..-|..++++....-
T Consensus 771 pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 771 PDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 7755444433 2221 1222455667777666532211 24677889999999999999999999987664
Q ss_pred c
Q 005161 709 L 709 (711)
Q Consensus 709 ~ 709 (711)
+
T Consensus 851 p 851 (895)
T KOG2076|consen 851 P 851 (895)
T ss_pred c
Confidence 3
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=6.6e-20 Score=182.51 Aligned_cols=311 Identities=13% Similarity=0.063 Sum_probs=238.5
Q ss_pred HHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc
Q 005161 335 ICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLD---LIAFTVVVRMYVKA 411 (711)
Q Consensus 335 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 411 (711)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334567788899999999988764 44566788888888889999999999988887532221 24567788888888
Q ss_pred CChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHccCCHHH
Q 005161 412 GSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQ----ELYDCVINCCARALPIDE 487 (711)
Q Consensus 412 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 487 (711)
|++++|..+|+.+.+. .+++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 9999999999888653 2456778888888899999999999999988876543322 234556667788899999
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 488 LSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVD-VISYNTIIAAYGQNKNLESMSSTVQEMQF 566 (711)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 566 (711)
|...|+++.+.. +.+...+..+...+.+.|++++|.+.++++...++.+ ..++..++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999888753 3345567777788888999999999999888776543 45678888889999999999999998887
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHCCCCCCh
Q 005161 567 DGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGE---QGWINEVVGVLTELKECGLRPDL 643 (711)
Q Consensus 567 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~ 643 (711)
. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.+.++.|++
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 6 355566678888888999999999999888874 6788888877776664 45888899999988887777776
Q ss_pred HhHHHHHHHHhccCCh
Q 005161 644 CSYNTLIKAYGIAGMV 659 (711)
Q Consensus 644 ~~~~~l~~~~~~~g~~ 659 (711)
. ++|.++|..
T Consensus 354 ~------~~c~~cg~~ 363 (389)
T PRK11788 354 R------YRCRNCGFT 363 (389)
T ss_pred C------EECCCCCCC
Confidence 5 346666654
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=8.6e-19 Score=186.50 Aligned_cols=415 Identities=10% Similarity=0.020 Sum_probs=233.9
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHH
Q 005161 259 SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSC 338 (711)
Q Consensus 259 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 338 (711)
..+...+......|+.++|++++.......+. +...+..+...+.+.|++++|..++++.....+. +...+..+...+
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~-~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l 93 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHMQL-PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34444444444444444444444444332211 3333455555555555555555555554444322 233344444455
Q ss_pred HccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 005161 339 KDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDAC 418 (711)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 418 (711)
...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+... .+...+..+...+...+..+.|+
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHH
Confidence 55555555555555555442 22333 55555555666666666666666665432 23344444555555556666666
Q ss_pred HHHHHHHhcCCCCCcH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhc-CCCCChh-hHH----HHHHH
Q 005161 419 AVLETMEKQKDIEPDA------YLYCDMLRIYQ-----QCGML---DKLSYLYYKILKS-GITWNQE-LYD----CVINC 478 (711)
Q Consensus 419 ~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~ 478 (711)
..++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+..
T Consensus 171 ~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 171 GAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 66554421 1211 01111111111 11122 5566666666543 1222211 111 11223
Q ss_pred HHccCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCc----hhHHHHHHHHHHhcCC
Q 005161 479 CARALPIDELSRVFDEMLQHGFT-PNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVD----VISYNTIIAAYGQNKN 553 (711)
Q Consensus 479 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~ 553 (711)
+...+++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+.+.+..+.+ ......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 34557777777777777765421 221 11224556777777888887777776655422 2345556666777788
Q ss_pred HHHHHHHHHHHHHCCC-----------CCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005161 554 LESMSSTVQEMQFDGF-----------SVS---LEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYG 619 (711)
Q Consensus 554 ~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (711)
+++|...++.+..... .|+ ...+..+...+...|+.++|..+++++... .+.+...+..+...+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 8888877777765421 112 123455667778888899999988888775 3556677888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005161 620 EQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITAL 688 (711)
Q Consensus 620 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 688 (711)
..|++++|++.+++..+ +.|+ ...+..++..+...|++++|...++++++ ..|+......+-+.+
T Consensus 405 ~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 405 ARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred hcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 88889999999988887 4566 66677777788888889999999988887 677765544444443
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=1.2e-16 Score=166.08 Aligned_cols=448 Identities=12% Similarity=0.072 Sum_probs=240.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccH--hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcH
Q 005161 200 GRAGNYREAKWYYKELKHLGYKPNA--SNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNV 277 (711)
Q Consensus 200 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 277 (711)
.+.|++..|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++.....+.+......++..+...|++++|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 46777777777777776642 332 222 5566666667777777777766622222223333445566666666666
Q ss_pred HHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhc
Q 005161 278 PRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHIC 357 (711)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 357 (711)
.+++++++..+|. +...+..++..+...++.++|++.++++...++. ...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPT--VQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 6666666666655 4555556666666666666666666666555433 222222222222234443466666666554
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHH
Q 005161 358 DGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLY 437 (711)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 437 (711)
. +.+...+..+..++.+.|-...|.++...-... + +...+..+- .+.|.+..+.... ++..
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l~--------~~~~a~~vr~a~~----~~~~--- 259 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQLE--------RDAAAEQVRMAVL----PTRS--- 259 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHHH--------HHHHHHHHhhccc----cccc---
Confidence 3 334445555555555555555555444332211 1 111110000 0000000000000 0000
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHhcC-CCCC-hhhH----HHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHH
Q 005161 438 CDMLRIYQQCG---MLDKLSYLYYKILKSG-ITWN-QELY----DCVINCCARALPIDELSRVFDEMLQHGFTPNIITLN 508 (711)
Q Consensus 438 ~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 508 (711)
... -.+.|+.-++.+...- ..|. ...| .-.+-++...++..++++.|+.+...+.+.......
T Consensus 260 --------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 260 --------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred --------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 000 1233333333333311 1111 1111 122234455566666666666666555443444555
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCC------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CC
Q 005161 509 VMLDIYGKAKLFKRVRKLFSMAKKLGL------VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGF-----------SV 571 (711)
Q Consensus 509 ~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~ 571 (711)
.+.++|...+++++|..++..+....+ ++......|..+|...+++++|..+++.+.+... .|
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 566666666666666666666544331 1222235566666666666666666666655210 11
Q ss_pred C--h-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHH
Q 005161 572 S--L-EAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYN 647 (711)
Q Consensus 572 ~--~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 647 (711)
+ - ..+..++..+...|+..+|.+.++++... -|-|......+.+.+...|++.+|...++.... +.|+ ..+..
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~ 488 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILER 488 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHH
Confidence 1 1 12334566677788888888888888765 356777888888888888888888888866665 4565 56677
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005161 648 TLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMI 685 (711)
Q Consensus 648 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 685 (711)
..+.++...|++.+|..+.+.+.+ ..|+......|-
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~ 524 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELD 524 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHH
Confidence 778888888888888888888877 667655444433
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=1.5e-16 Score=165.38 Aligned_cols=450 Identities=10% Similarity=-0.018 Sum_probs=269.8
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005161 59 LYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEA 138 (711)
Q Consensus 59 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 138 (711)
...+.|+++.|+..|+++.+.+|........++..+...|+.++|+..+++...... ........++..+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n-~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMN-ISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 346788888888888888888887643444778888888888888888888773221 1333444446677788888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005161 139 ELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHL 218 (711)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 218 (711)
.++++++.+..+ .++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 888888888753 35667777778888888888888888888774 355555544444443456665688888888876
Q ss_pred CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh--hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHH
Q 005161 219 GYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS--SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSC 296 (711)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 296 (711)
. +.+...+..+..+..+.|-...|.++..+-.......+ .+-...+....+..... ... ...
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~------------~~~-~~~-- 262 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLP------------TRS-ETE-- 262 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccc------------ccc-chh--
Confidence 3 22456667777777888877777766655332211111 11111111111111000 000 000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhc-CCCccHh-----hHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHH
Q 005161 297 SILVMAYVKHGLIDDAMKVLGDKRWK-DTVFEDN-----LYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMI 370 (711)
Q Consensus 297 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 370 (711)
+.--.+.|+.-++.+... +..|... ...-.+-++...++..++++.|+.+...+.+....+-..+.
T Consensus 263 --------r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 263 --------RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred --------hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 000123333333333321 1112111 11223344555666666666666666655444445566666
Q ss_pred HHHHccCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----------CCCcH-
Q 005161 371 DTYSVMGMFTEAEKLYLNLKSSG-----IRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKD----------IEPDA- 434 (711)
Q Consensus 371 ~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~- 434 (711)
++|...+++++|..+|+.+.... ..++......|..+|...+++++|..+++.+.+... ..|+.
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 66666677777777766665432 122333345666667777777777777776644221 01221
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 005161 435 --YLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLD 512 (711)
Q Consensus 435 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 512 (711)
..+..++..+...|+..+|.+.++.+.... +-|......+...+...|.+.+|.+.++...... +-+..+....+.
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~ 492 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHH
Confidence 233445566677777777777777776554 3466777777777777888888888876665542 344555556666
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCch
Q 005161 513 IYGKAKLFKRVRKLFSMAKKLGLVDV 538 (711)
Q Consensus 513 ~~~~~~~~~~a~~~~~~~~~~~~~~~ 538 (711)
.+...+++++|..+.+.+....|.+.
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 67777888888888877777776444
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2e-14 Score=131.04 Aligned_cols=448 Identities=11% Similarity=0.069 Sum_probs=186.4
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+...|......-..++++..|..+|++++..+..+...|...+..-.++.....|..+++.....-+..+ ..|...+..
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHH
Confidence 3334444444434444555555555555554444444555555555555555555555554443222211 112222222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 005161 129 YSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREA 208 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 208 (711)
--..|++..|.++|++-..- .|+...|++.+..=.+-++.+.|..+|++..-. .|++.+|---...-.+.|+...|
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 22335555555555554443 455555555555444455555555555554432 24555554444444445555555
Q ss_pred HHHHHHHHhc-CC-CccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh--hHHHHHHHHHHhcCCCCcHHHHH---
Q 005161 209 KWYYKELKHL-GY-KPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS--SILGTLLQAYEKAGRTDNVPRIL--- 281 (711)
Q Consensus 209 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~--- 281 (711)
..+|+.+.+. |- ..+...+.+....-..+..++.|.-+++-.+..-|... .++..+...--+-|+....+...
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 5555544432 10 01122233333333344444555555555544444332 33444444444444433333221
Q ss_pred -----HHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccH-hhHHHHHHHHHccCChhhHHHHHHHHh
Q 005161 282 -----KGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFED-NLYHLLICSCKDSGHLANAVKIYSHMH 355 (711)
Q Consensus 282 -----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 355 (711)
+..+..+|. |-.+|-..++.-...|+.+...+++++....-+..+. ..|...|-...
T Consensus 307 Rk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWi---------------- 369 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWI---------------- 369 (677)
T ss_pred hhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH----------------
Confidence 222222222 4444444444444444444444444444332211111 11111110000
Q ss_pred hcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHHcCChHHHHHHHHHHHhcCCCC
Q 005161 356 ICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRM----YVKAGSLKDACAVLETMEKQKDIE 431 (711)
Q Consensus 356 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~A~~~~~~~~~~~~~~ 431 (711)
|-.+-.-....+++.+.++|+..++. ++....|+..+--+ -.++.++..|.+++... -|..
T Consensus 370 -----------nYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A---IG~c 434 (677)
T KOG1915|consen 370 -----------NYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA---IGKC 434 (677)
T ss_pred -----------HHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH---hccC
Confidence 00000111334455555555554442 22233333322222 22344455555555443 2334
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCccHHHHHHH
Q 005161 432 PDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHG-FTPNIITLNVM 510 (711)
Q Consensus 432 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l 510 (711)
|-..+|...|..-.+.+.+|.+..++++.+..++. +-.+|......-...|+.+.|..+|.-.++.. .......|...
T Consensus 435 PK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaY 513 (677)
T KOG1915|consen 435 PKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAY 513 (677)
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 45555555555555555555555555555544322 33344444444444455555555555444321 11122333333
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcC
Q 005161 511 LDIYGKAKLFKRVRKLFSMAKKLG 534 (711)
Q Consensus 511 ~~~~~~~~~~~~a~~~~~~~~~~~ 534 (711)
|+.-...|.++.|..+++++.+..
T Consensus 514 IdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 514 IDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hhhhhhcchHHHHHHHHHHHHHhc
Confidence 333344555555555555554443
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=2e-16 Score=143.04 Aligned_cols=496 Identities=14% Similarity=0.086 Sum_probs=290.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENW-LVMLNAYSQQGKLEEAELVLVSMREAGFSP----NIVAYNTL 160 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l 160 (711)
+...|.+.|..+..+.+|+..|+-+.+....|+...+ ..+...+.+.+.+.+|.+.+...+..-+.. -....+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 4556677788888888888888887777666665443 234556777788888888877766542111 12345555
Q ss_pred HHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCH
Q 005161 161 MTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDE 240 (711)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (711)
.-.+.+.|.++.|..-|+...+. .|+..+-..|+-++.--|+.++-.+.|.+|......||..-|.. ...+.
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~------~~ddp 354 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK------EKDDP 354 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC------CcCCc
Confidence 56677888888888888877664 36666544455555556788888888888877655554432210 00000
Q ss_pred HHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcC--CHHHHHHHHHh
Q 005161 241 EGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHG--LIDDAMKVLGD 318 (711)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~ 318 (711)
+. .++.+ ..-+-.+.-+-+.+ +.++++-.-.+
T Consensus 355 ~~--~ll~e--------------------------------------------ai~nd~lk~~ek~~ka~aek~i~ta~k 388 (840)
T KOG2003|consen 355 DD--NLLNE--------------------------------------------AIKNDHLKNMEKENKADAEKAIITAAK 388 (840)
T ss_pred ch--HHHHH--------------------------------------------HHhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 00 00000 00011111111111 12222222222
Q ss_pred hhhcCCCccHhh-HHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 005161 319 KRWKDTVFEDNL-YHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLD 397 (711)
Q Consensus 319 ~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 397 (711)
+...-+.|+-.. +...+.....+...+.|.++ -..-...+.+.|+++.|.+++.-..+..-+.-
T Consensus 389 iiapvi~~~fa~g~dwcle~lk~s~~~~la~dl---------------ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~ 453 (840)
T KOG2003|consen 389 IIAPVIAPDFAAGCDWCLESLKASQHAELAIDL---------------EINKAGELLKNGDIEGAIEILKVFEKKDNKTA 453 (840)
T ss_pred HhccccccchhcccHHHHHHHHHhhhhhhhhhh---------------hhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence 222222222111 11112211111111111111 01112346788899999988888777644433
Q ss_pred HHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 005161 398 LIAFTVVVRMYVK--AGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCV 475 (711)
Q Consensus 398 ~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 475 (711)
...-+.|...+.- -.++.+|.++-+...... +-+......-.+....+|++++|.+.+++.+..........|+.-
T Consensus 454 saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig 531 (840)
T KOG2003|consen 454 SAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG 531 (840)
T ss_pred HHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 3334444333333 235777777666554322 122333222333445678888888888888776544444444433
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 476 INCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLE 555 (711)
Q Consensus 476 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 555 (711)
+ .+...|+.++|+..|-++..- +..+...+..+...|....+..+|.+++.+....-|.++.....+...|-+.|+-.
T Consensus 532 l-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 532 L-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred c-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchh
Confidence 3 355677888888887766532 12355666667777777888888888888777777778888888888888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hhcCCHHHHHHHHHHH
Q 005161 556 SMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIY-GEQGWINEVVGVLTEL 634 (711)
Q Consensus 556 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~ 634 (711)
.|.+.+-+--+. +|-+..+...|...|....-+++|+.+|++..- +.|+..-|..++..| .+.|++.+|..+++..
T Consensus 610 qafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 610 QAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 777765554433 466777777777777777778888888877654 577888887777544 4567888888888877
Q ss_pred HHCCCCCChHhHHHHHHHHhccCC
Q 005161 635 KECGLRPDLCSYNTLIKAYGIAGM 658 (711)
Q Consensus 635 ~~~~~~p~~~~~~~l~~~~~~~g~ 658 (711)
... ++-|......|++.+...|.
T Consensus 687 hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 687 HRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHh-CccchHHHHHHHHHhccccc
Confidence 664 55567777777777776664
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.6e-14 Score=129.38 Aligned_cols=488 Identities=11% Similarity=0.081 Sum_probs=362.6
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005161 72 AFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFS 151 (711)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 151 (711)
-|+.-.+.+..+...|....+.-..++++..|..+|+..++.+.. +...|...+..-.+...+..|..++++.+..-+.
T Consensus 61 efEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 61 EFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 344444445445567888888888899999999999999987754 7778888999999999999999999999986333
Q ss_pred CCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHH
Q 005161 152 PNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLI 231 (711)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 231 (711)
-...|...+..=-..|++..|.++|++..+ ..|+...|++.|..-.+.+..+.|..+|++..- +.|+..+|....
T Consensus 140 -VdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikya 214 (677)
T KOG1915|consen 140 -VDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYA 214 (677)
T ss_pred -HHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHH
Confidence 334455555444567999999999999887 469999999999999999999999999999986 469999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCh---hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcc-hhHHHHHHHHHHhcC
Q 005161 232 NLHAKYEDEEGAVNTLDDMLNMGCQHS---SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFN-LTSCSILVMAYVKHG 307 (711)
Q Consensus 232 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 307 (711)
..-.+.|....+..+++.+++.-.+.. .++.+.+..-.....++.|.-+++-+++.-|... ...|..+...--+.|
T Consensus 215 rFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfG 294 (677)
T KOG1915|consen 215 RFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFG 294 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc
Confidence 999999999999999999887544322 5667777777777888888888888887765522 233444444333444
Q ss_pred CHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 005161 308 LIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYL 387 (711)
Q Consensus 308 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (711)
+-....+..-.- -.--++.+.+.+ +.|-.+|...+..-...|+.+...++|+
T Consensus 295 d~~gIEd~Iv~K---------------------------Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yE 346 (677)
T KOG1915|consen 295 DKEGIEDAIVGK---------------------------RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYE 346 (677)
T ss_pred chhhhHHHHhhh---------------------------hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHH
Confidence 433333221100 001133343333 5566677777777777788888888888
Q ss_pred HHHhCCCCCCHH-------HH---HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH----HHcCCHHHH
Q 005161 388 NLKSSGIRLDLI-------AF---TVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIY----QQCGMLDKL 453 (711)
Q Consensus 388 ~~~~~~~~~~~~-------~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a 453 (711)
..+.. ++|-.. +| |..+..-....+++.+.++|+..++. ++....||..+--.| .++.++..|
T Consensus 347 rAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~A 423 (677)
T KOG1915|consen 347 RAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGA 423 (677)
T ss_pred HHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHH
Confidence 88775 333221 11 11122223568999999999988663 455566665554444 467899999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 005161 454 SYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKL 533 (711)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 533 (711)
.+++-..+ |..|-..+|...|..-.+.++++....+++..++.+ |.+..+|......-...|+.+.|..+|..+.++
T Consensus 424 RkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 424 RKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 99887765 457788899999999999999999999999999876 668888888888888899999999999998887
Q ss_pred CC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-----hcC-----------CHHHHHHH
Q 005161 534 GL--VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYG-----KEG-----------QMENFKNV 595 (711)
Q Consensus 534 ~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~ 595 (711)
.. .....|.+.|..-...|.++.|..+|+++.+.. +...+|.++...-. +.| ....|..+
T Consensus 501 p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~i 578 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKI 578 (677)
T ss_pred cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHH
Confidence 66 355678888888889999999999999998863 44446666554332 233 56689999
Q ss_pred HHHHHH
Q 005161 596 LRRMKE 601 (711)
Q Consensus 596 ~~~~~~ 601 (711)
|+++..
T Consensus 579 ferAn~ 584 (677)
T KOG1915|consen 579 FERANT 584 (677)
T ss_pred HHHHHH
Confidence 998764
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=6.7e-16 Score=139.63 Aligned_cols=280 Identities=11% Similarity=0.103 Sum_probs=209.6
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHH-HHH-cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 005161 406 RMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRI-YQQ-CGMLDKLSYLYYKILKSGITWNQELYDCVINCCARAL 483 (711)
Q Consensus 406 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 483 (711)
--+.+.|+++.|+++++-+.+..+...+. .-+.+-.. |.+ -.++.+|..+-+..+... ..++.....-.+.....|
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~sa-aa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASA-AANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHH-HhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 34789999999999999885543322222 22223222 222 336667776666655432 122222222233445679
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 484 PIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQE 563 (711)
Q Consensus 484 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 563 (711)
++++|.+.|++.+...-.-....|+. .-.+...|++++|++.|-.+...-..+..+...+...|....++..|++++.+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 99999999999997643333333333 33467789999999999887766557888888999999999999999999988
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCh
Q 005161 564 MQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDL 643 (711)
Q Consensus 564 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 643 (711)
.... +|.++...+.|.+.|-+.|+-..|.+..-..-.. ++-+..+...|...|....-+++|+.+|++..- +.|+.
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 8765 6888999999999999999999999887665543 677889999999999999999999999999865 78999
Q ss_pred HhHHHHHHH-HhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcch
Q 005161 644 CSYNTLIKA-YGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDK 693 (711)
Q Consensus 644 ~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 693 (711)
.-|..++.. +.+.|++.+|.++|+..-.. ++-|......|++.+...|-
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999888755 55789999999999998752 55577888888888877763
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=2e-15 Score=135.61 Aligned_cols=461 Identities=14% Similarity=0.093 Sum_probs=232.7
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHH--ccCCHHHH-HHHHHHHHHc------------
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYK--KSWNVEEA-EFAFNQMRKL------------ 79 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A-~~~~~~~~~~------------ 79 (711)
+.+=|+++. ....|.+..+.-+|+.|.+.|++.+...-..|++.-+ +..++--| .+.|-.+...
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 334445544 4567788999999999999998888887777776543 33332211 1122222222
Q ss_pred --------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005161 80 --------GLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFS 151 (711)
Q Consensus 80 --------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 151 (711)
-|..+.++..||.++++-...+.|.+++++......+....+++.+|.+-.-. ...+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 23334456666666666666666666666655555555555666655443221 124555666666566
Q ss_pred CCHHHHHHHHHHhhccCChHHH----HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHh----cCCC-
Q 005161 152 PNIVAYNTLMTGYGKVSNMEAA----QRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYRE-AKWYYKELKH----LGYK- 221 (711)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~----~~~~- 221 (711)
||..|+|+++.+.++.|+++.| .+++.+|++.|++|...+|..+|..+++.++..+ |..++.+... ..++
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 6666666666666666655443 3344555556666666666666666655555432 2222222221 1111
Q ss_pred --c-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHH
Q 005161 222 --P-NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSI 298 (711)
Q Consensus 222 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 298 (711)
| |...|...+..|.+..|.+-|.++..-+...... +. +.... -....|..
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~------------------~~--------ig~~~-~~~fYyr~ 403 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNW------------------KF--------IGPDQ-HRNFYYRK 403 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch------------------hh--------cChHH-HHHHHHHH
Confidence 1 2334455555555555555555544433321100 00 00000 02234455
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCC
Q 005161 299 LVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGM 378 (711)
Q Consensus 299 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 378 (711)
+....++....+.-..+++.|.-+-..|+..+...++++....+.++-.-+++..+...|..-+..
T Consensus 404 ~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~-------------- 469 (625)
T KOG4422|consen 404 FFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD-------------- 469 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH--------------
Confidence 666666777777777777777777777777777777777777777777777777776554222211
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHH-HHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005161 379 FTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKA-GSLKDA-CAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYL 456 (711)
Q Consensus 379 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 456 (711)
-.++++..+......|+...-..+-....+. -++.++ ...-.++ ... .-.....+.++-.+.+.|..++|.++
T Consensus 470 --l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~-r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~ 544 (625)
T KOG4422|consen 470 --LREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ-RAQ--DWPATSLNCIAILLLRAGRTQKAWEM 544 (625)
T ss_pred --HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH-Hhc--cCChhHHHHHHHHHHHcchHHHHHHH
Confidence 1222333333322222222111111111111 011111 1111222 111 22233344445555666666666666
Q ss_pred HHHHHhcC-CCCChhhHH---HHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHH
Q 005161 457 YYKILKSG-ITWNQELYD---CVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKL 526 (711)
Q Consensus 457 ~~~~~~~~-~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 526 (711)
+..+.+.+ -.|-....+ -+++...+.++...|+..++-+...+.+.-...-+.++..|.-.....+++.-
T Consensus 545 l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~ 618 (625)
T KOG4422|consen 545 LGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALSN 618 (625)
T ss_pred HHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhh
Confidence 66664433 122222333 44455556666777777777776655443333455555555544444444433
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.80 E-value=6.1e-14 Score=137.78 Aligned_cols=663 Identities=11% Similarity=0.092 Sum_probs=314.5
Q ss_pred hhcCCCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCC------------------------CCHhhHHHHHHHHHc
Q 005161 7 MSLGAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQ------------------------PNVATFGMLMGLYKK 62 (711)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~------------------------~~~~~~~~l~~~~~~ 62 (711)
+.+|+.||+.+|.++|..||..|+.+.|- +|..|.-...+ |...+|..|..+|..
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~ 95 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRI 95 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHh
Confidence 47899999999999999999999999887 66666543333 445566666666666
Q ss_pred cCCHHH---HHHHHHHHH----HcCCCchhHH---------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 005161 63 SWNVEE---AEFAFNQMR----KLGLVCESAY---------------SAMITIYTRLSLYEKAEEVIRLIREDKVVPNLE 120 (711)
Q Consensus 63 ~g~~~~---A~~~~~~~~----~~~~~~~~~~---------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 120 (711)
.||+.. .++.+..+. ..+....+.| ...+...+-.|.++.+++++..+...... .
T Consensus 96 hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~-~-- 172 (1088)
T KOG4318|consen 96 HGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWN-A-- 172 (1088)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccccc-c--
Confidence 666443 111111111 1111111111 22223333334444444444332221100 0
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 005161 121 NWLVMLNAYSQ-QGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGW 199 (711)
Q Consensus 121 ~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 199 (711)
+....++-+.. ...+++...+.....+ .|++.+|..++..-...|+++.|..++.+|.+.|+.-+..-|-.|+-+
T Consensus 173 p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g- 248 (1088)
T KOG4318|consen 173 PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG- 248 (1088)
T ss_pred hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc-
Confidence 00001111111 1112222222222222 477888888888777888888888888888888887777766666654
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHH-----------HHHHHHHH----------------
Q 005161 200 GRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAV-----------NTLDDMLN---------------- 252 (711)
Q Consensus 200 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~---------------- 252 (711)
.++..-+..+.+-|.+.|+.|+..|+...+..+..+|....+. .++..+..
T Consensus 249 --~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v 326 (1088)
T KOG4318|consen 249 --INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSV 326 (1088)
T ss_pred --CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 6777777888888888888888888776666555543321111 01111110
Q ss_pred ---------CCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhcc---CCcchhHHHHHHHHHHhcCCHHHHHHHHH--h
Q 005161 253 ---------MGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQH---VLFNLTSCSILVMAYVKHGLIDDAMKVLG--D 318 (711)
Q Consensus 253 ---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--~ 318 (711)
.|............-....|+-+..+++...+.... ...++..+..++.-|.+.-+..-...++. .
T Consensus 327 ~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~q 406 (1088)
T KOG4318|consen 327 IGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQ 406 (1088)
T ss_pred HHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 111111222222222333455555555554443211 11133344444333322111100000000 0
Q ss_pred hhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHh----hcCC-------CCcHHHHHHHHHHHHccCCHHHHHHHHH
Q 005161 319 KRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMH----ICDG-------KPNLHIMCTMIDTYSVMGMFTEAEKLYL 387 (711)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (711)
....+. +......+..... .-....+.+-+..+. .+.. .+-...-+.++..|.+.-+..+++..-+
T Consensus 407 gls~~l--~se~tp~vsell~-~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~e 483 (1088)
T KOG4318|consen 407 GLSLNL--NSEDTPRVSELLE-NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEE 483 (1088)
T ss_pred HHHhhh--chhhhHHHHHHHH-HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000000000000 001111111111110 0000 0111122334444444444444443332
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 005161 388 NLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQ-KDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGIT 466 (711)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 466 (711)
.....-+ ...|..++..+......+.|.....++... ..+.-+..-+..+.+.+.+.+....+..++.++.+.-..
T Consensus 484 kye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n 560 (1088)
T KOG4318|consen 484 KYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAEN 560 (1088)
T ss_pred HHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhC
Confidence 2222111 145677777777777777777777766211 112234445667777777777777777777777653322
Q ss_pred CC--hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHH
Q 005161 467 WN--QELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTI 544 (711)
Q Consensus 467 ~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 544 (711)
-+ ..++-.+++.....|+.+...++++-+...|+..+ ..++....+.++...+.+.++...+...+.+.....+
T Consensus 561 ~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~l 636 (1088)
T KOG4318|consen 561 EPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGL 636 (1088)
T ss_pred CchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHH
Confidence 11 33444555666667777777777777666654432 2233334445555555555554444433333222222
Q ss_pred HHH---------------------HHhcCCHHHHHHHHHHH---HHC--------C-CCC---------ChhhHHHHHHH
Q 005161 545 IAA---------------------YGQNKNLESMSSTVQEM---QFD--------G-FSV---------SLEAYNSMLDA 582 (711)
Q Consensus 545 ~~~---------------------~~~~~~~~~a~~~~~~~---~~~--------~-~~~---------~~~~~~~l~~~ 582 (711)
.+. |.+.|+...+.++.+.= .+. | +.| +......++..
T Consensus 637 crlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~s 716 (1088)
T KOG4318|consen 637 CRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQS 716 (1088)
T ss_pred HHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHH
Confidence 222 33333333333222110 000 0 000 11223346778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHCC-CCC-ChHhHHHHHHHHhccC
Q 005161 583 YGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQG---WINEVVGVLTELKECG-LRP-DLCSYNTLIKAYGIAG 657 (711)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g 657 (711)
|.+.|+++.|..+|.++. +.|+..+...|...+.+.. |..++....++..+.. ..| +..-|.-.+...+...
T Consensus 717 y~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~ 793 (1088)
T KOG4318|consen 717 YLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTE 793 (1088)
T ss_pred HHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHH
Confidence 888888888888888887 5667666666666655443 3344444444444321 111 1222333233333444
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcc
Q 005161 658 MVEDAVGLVKEMRENGIEPDKITYTNMITALQRND 692 (711)
Q Consensus 658 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 692 (711)
.-+.|.+.+.+..+.....+..++..+++++.+..
T Consensus 794 qkkaAkk~f~r~eeq~~v~tad~ls~f~k~L~~nd 828 (1088)
T KOG4318|consen 794 QKKAAKKCFERLEEQLTVSTADELSDFLKCLVKND 828 (1088)
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhcC
Confidence 44567777777776544345566666666666554
No 37
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.7e-13 Score=123.44 Aligned_cols=389 Identities=12% Similarity=0.154 Sum_probs=259.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHH
Q 005161 292 NLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMID 371 (711)
Q Consensus 292 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 371 (711)
...++..+|.++++-...+.|.+++++......+.+..+||.+|.+..-.. ..++..+|......||..|||++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 567899999999999999999999999998888889999999997654332 2788999999999999999999999
Q ss_pred HHHccCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhc---CCC----CCcHHHHHH
Q 005161 372 TYSVMGMFTE----AEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKD-ACAVLETMEKQ---KDI----EPDAYLYCD 439 (711)
Q Consensus 372 ~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~---~~~----~~~~~~~~~ 439 (711)
+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+ +..++.++... ..+ +.+...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998765 56788889999999999999999999998887644 55555555322 112 224566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC----CCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 005161 440 MLRIYQQCGMLDKLSYLYYKILKSG----ITWN---QELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLD 512 (711)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 512 (711)
-+..|....+.+.|.++-..+.... +.|+ ..-|..+....++....+.....|+.++-+-+-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 8888888888888877765543321 2222 22355666777788888888888888887777788888888888
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHhcCCH
Q 005161 513 IYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLE---AYNSMLDAYGKEGQM 589 (711)
Q Consensus 513 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~ 589 (711)
+..-.+.++-..+++..+...+.. + +-+--++++..+.+....|+.. -+.....-|+ ..-.
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght----~-----------r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a-ad~~ 505 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHT----F-----------RSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA-ADIK 505 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhh----h-----------hHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH-HHHH
Confidence 888888888888888776664321 1 1111223344444433333322 2222222111 1111
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC-CCChHhHH---HHHHHHhccCChHHHHHH
Q 005161 590 ENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGL-RPDLCSYN---TLIKAYGIAGMVEDAVGL 665 (711)
Q Consensus 590 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~---~l~~~~~~~g~~~~A~~~ 665 (711)
+.....-.++... .-.....+.+.-.+.+.|..++|.++|.-+.+.+- -|-....| -++......+.+..|..+
T Consensus 506 e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 506 EAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 1222222333333 33445566777778889999999999998865432 23333344 556677788889999999
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHHH
Q 005161 666 VKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSL 702 (711)
Q Consensus 666 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 702 (711)
++-|...++..-...-..+...|.-.....+|+.-+.
T Consensus 584 lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~l~ 620 (625)
T KOG4422|consen 584 LQLASAFNLPICEGLAQRIMEDFAINQEQKEALSNLT 620 (625)
T ss_pred HHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhhhh
Confidence 9998764432222233344444444434444444333
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=7.4e-14 Score=127.99 Aligned_cols=422 Identities=14% Similarity=0.068 Sum_probs=222.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHh
Q 005161 192 YRSMIEGWGRAGNYREAKWYYKELKHLGYKPN-ASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEK 270 (711)
Q Consensus 192 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (711)
+-....-|.++|.+++|.++|.+.++. .|+ +..|.....+|...|+++.+.+..-..++..|...-.+.+-..++..
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 344566778899999999999999885 667 77788888899999999999999999998888877788888888888
Q ss_pred cCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHH
Q 005161 271 AGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKI 350 (711)
Q Consensus 271 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 350 (711)
.|++++|+.=+ +-..+...+....-.--+.+++.+.. ..-
T Consensus 196 lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a---------------------------~~k 235 (606)
T KOG0547|consen 196 LGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQA---------------------------MKK 235 (606)
T ss_pred hccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHH---------------------------HHH
Confidence 88888776321 22233333333222222233322211 000
Q ss_pred HHHHhh-c--CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHh
Q 005161 351 YSHMHI-C--DGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKA-GSLKDACAVLETMEK 426 (711)
Q Consensus 351 ~~~~~~-~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~ 426 (711)
.++-.+ . .+-|......+....+...-.. .+...+...|...-..+-..+... ..+..|.+.+.+-..
T Consensus 236 a~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~ 307 (606)
T KOG0547|consen 236 AKEKLKENRPPVLPSATFIASYFGSFHADPKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECL 307 (606)
T ss_pred HHHhhcccCCCCCCcHHHHHHHHhhccccccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhh
Confidence 000000 0 0112222222221111100000 000000000000000000000000 011111111111100
Q ss_pred cCCCCC-----c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 005161 427 QKDIEP-----D------AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEM 495 (711)
Q Consensus 427 ~~~~~~-----~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 495 (711)
.....+ | ..+.......+.-.|+.-.+..-|+..+.....++. .|-.+...|....+.++....|...
T Consensus 308 ~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A 386 (606)
T KOG0547|consen 308 GSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKA 386 (606)
T ss_pred hhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHH
Confidence 000000 0 111111112233455666666666666655433322 1444455566666666666666666
Q ss_pred HhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 005161 496 LQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEA 575 (711)
Q Consensus 496 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 575 (711)
.+.+ +.++.+|..-.+.+.-.+++++|..-|+......|.+...|..+.-+..+.+.++++...|++..+. +|..+.+
T Consensus 387 ~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Ev 464 (606)
T KOG0547|consen 387 EDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEV 464 (606)
T ss_pred HhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchH
Confidence 6543 3344455555555555666777777777777666666666666666666666777777777776655 4666667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HHH--HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHh
Q 005161 576 YNSMLDAYGKEGQMENFKNVLRRMKETSCTFD-------HYT--YNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCS 645 (711)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~ 645 (711)
|+.....+...++++.|.+.++...+. .|+ ... --+++ .+.-.+|++.|..++.+.++ +.|. ...
T Consensus 465 y~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A 539 (606)
T KOG0547|consen 465 YNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQA 539 (606)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHH
Confidence 777777777777777777777766652 222 111 11111 11122667777777777766 3454 556
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 646 YNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 646 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
|..|...-...|+.++|+++|++...
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777777776553
No 39
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.71 E-value=3.8e-10 Score=107.74 Aligned_cols=562 Identities=13% Similarity=0.073 Sum_probs=305.3
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC--ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN 127 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (711)
+..|...+..+.++|++-.-...|++.+..-|.. ...|...+......+-++-+..++++.++.. +....-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHH
Confidence 4677888888899999999999999998877654 5689999999999999999999999998854 334666788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHhhccCChHH---HHHHHHHHHhcCCCCC--hhhHHHHH
Q 005161 128 AYSQQGKLEEAELVLVSMREAG------FSPNIVAYNTLMTGYGKVSNMEA---AQRLFLSIKDVGLEPD--ETTYRSMI 196 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~li 196 (711)
.+++.+++++|.+.+..++... .+.+...|..+....++..+.-. ...++..+... -+| ...|++|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 8899999999999998887532 24566777777776665543222 22333333332 234 34589999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCc
Q 005161 197 EGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDN 276 (711)
Q Consensus 197 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 276 (711)
.-|++.|.+++|.++|++.... .....-|..+...|+......-+..+= ...+.+...... -+++-
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~-----------~dl~~ 321 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDD-----------VDLEL 321 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhh-----------hhHHH
Confidence 9999999999999999998875 234445666666665433221111111 010111111100 00011
Q ss_pred HHHHHHHhh------------hccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhc-CC----CccHhhHHHHHHHHH
Q 005161 277 VPRILKGSL------------YQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWK-DT----VFEDNLYHLLICSCK 339 (711)
Q Consensus 277 a~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~----~~~~~~~~~l~~~~~ 339 (711)
...-|+..+ .+++. ++..|..-+..+ .|+..+-...+.+.... ++ ..-...|..+...|-
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~-nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPH-NVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCc-cHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHH
Confidence 111122221 22222 444444433322 34444444444443322 11 001123444444444
Q ss_pred ccCChhhHHHHHHHHhhcCCCCc---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 005161 340 DSGHLANAVKIYSHMHICDGKPN---LHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKD 416 (711)
Q Consensus 340 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 416 (711)
.+|+++.|..+|++..+...+.- ..+|..-...-.+..+++.|+++.+..... |.... ..+...+.+.+
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~pvQ 470 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSEPVQ 470 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCCcHH
Confidence 45555555555554444332211 122222223333344444444444433332 11100 01111111100
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 005161 417 ACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEML 496 (711)
Q Consensus 417 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 496 (711)
+ .+ ..+...|+..++.--..|-++....+++++++..+.....+.| ....+....-++++.+++++-+
T Consensus 471 ~-rl----------hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI 538 (835)
T KOG2047|consen 471 A-RL----------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGI 538 (835)
T ss_pred H-HH----------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCC
Confidence 0 00 0133456666666666777777788888887766542222222 2222334455667777776655
Q ss_pred hCCCCcc-HHHHHHHHHHHhc---cCcHHHHHHHHHHHHHcCCCchh--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005161 497 QHGFTPN-IITLNVMLDIYGK---AKLFKRVRKLFSMAKKLGLVDVI--SYNTIIAAYGQNKNLESMSSTVQEMQFDGFS 570 (711)
Q Consensus 497 ~~~~~~~-~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 570 (711)
..--.|+ ...|+..+.-+.+ ...++.|..+|+++.+..||... .|-.....--+.|-...|++++++.... ++
T Consensus 539 ~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~ 617 (835)
T KOG2047|consen 539 SLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VK 617 (835)
T ss_pred ccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CC
Confidence 4322333 2345554443332 34578888888888886554322 2222222334467777888888886543 33
Q ss_pred CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHhhcCCHHHHHHHHHHHHHCCCCCC--h
Q 005161 571 VS--LEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNI---MIDIYGEQGWINEVVGVLTELKECGLRPD--L 643 (711)
Q Consensus 571 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~ 643 (711)
+. ...|+..|.--...=-+.....++++.++. -|+...-.. ..+.-++.|.++.|..++..-.+. +.|. .
T Consensus 618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~ 694 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTT 694 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCCh
Confidence 32 345666655444333445566777777763 455443222 223446678888888888766653 3443 5
Q ss_pred HhHHHHHHHHhccCC
Q 005161 644 CSYNTLIKAYGIAGM 658 (711)
Q Consensus 644 ~~~~~l~~~~~~~g~ 658 (711)
..|.+.=.--.+.|+
T Consensus 695 ~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 695 EFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHHHHhcCC
Confidence 556666666667777
No 40
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.69 E-value=8.7e-10 Score=105.35 Aligned_cols=312 Identities=13% Similarity=0.097 Sum_probs=171.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---cHHHHHHHHHHHHH
Q 005161 376 MGMFTEAEKLYLNLKSSGIRL------DLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEP---DAYLYCDMLRIYQQ 446 (711)
Q Consensus 376 ~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 446 (711)
.|+..+-...|.++... +.| -...|..+...|-..|+++.|..+|++..+.. .+. -..+|..-...-.+
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~-y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP-YKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC-ccchHHHHHHHHHHHHHHHh
Confidence 45566666666666553 112 12456777777888888888888888774321 111 13345555555556
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-----------------ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 005161 447 CGMLDKLSYLYYKILKSGITW-----------------NQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNV 509 (711)
Q Consensus 447 ~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 509 (711)
..+++.|.++++........| +..+|...++.-...|-++....+++.+.+..+. ++...-.
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~N 516 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIIN 516 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 677777777777665443221 1224444555555566677777777777765433 2222222
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCC-C-chhHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHH
Q 005161 510 MLDIYGKAKLFKRVRKLFSMAKKLGL-V-DVISYNTIIAAYGQ---NKNLESMSSTVQEMQFDGFSVSLEA--YNSMLDA 582 (711)
Q Consensus 510 l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 582 (711)
....+-...-++++.+.+++-....+ | -...|+..+.-+.+ ...++.|..+|++..+ |+||...- |......
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 22233445556777777765555444 3 23455555554433 3356777777777776 55554322 1122222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHH---HHHHHhccC
Q 005161 583 YGKEGQMENFKNVLRRMKETSCTFDH--YTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNT---LIKAYGIAG 657 (711)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~g 657 (711)
-...|-...|..+++++... +++.. ..||..|.--...=-+.....+|++.++. -|+...-.. ....-.+.|
T Consensus 596 EEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklG 672 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLG 672 (835)
T ss_pred HHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhh
Confidence 23446666777777776543 33322 35666664333333344566777777773 455433222 233445677
Q ss_pred ChHHHHHHHHHHHHcCCCCC--cchHHHHHHHHHhcchHH
Q 005161 658 MVEDAVGLVKEMRENGIEPD--KITYTNMITALQRNDKFL 695 (711)
Q Consensus 658 ~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~ 695 (711)
..+.|..+|....+- ..|. ...|.+.-.-=.+.|+-+
T Consensus 673 EidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 673 EIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred hHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHH
Confidence 888888887776653 4453 345666655556777733
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=9.3e-12 Score=113.77 Aligned_cols=294 Identities=14% Similarity=0.066 Sum_probs=205.8
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHcCC
Q 005161 371 DTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIE-PDAYLYCDMLRIYQQCGM 449 (711)
Q Consensus 371 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 449 (711)
.++....+.+++.+-.+.....|++.+...-+....+.-...+++.|+.+|+++.+..+.. .|..+|+.++-.- ..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--NDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hhh
Confidence 4455555777777777777777776665555555556666778888888888886654332 2455666554332 211
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHH
Q 005161 450 LDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSM 529 (711)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 529 (711)
.. +..+.+-...--+--+.|...+.+-|+-.++.++|...|+..++.+ +.....|+.+..-|....+...|.+-+..
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11 1111111111112345567777778888888888888888888765 44566677777788888888888888888
Q ss_pred HHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 005161 530 AKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHY 609 (711)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (711)
+.+.+|.|...|-.+.++|.-.+-+.-|+-+|++..... |.|...|..|.++|.+.++.++|++.|.+....| ..+..
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~ 467 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGS 467 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchH
Confidence 888888888888888888888888888888888888764 6778888888888888888888988888888764 33556
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH----CCCCCC--hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 610 TYNIMIDIYGEQGWINEVVGVLTELKE----CGLRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
.+..|...|-+.++.++|...|++-++ .|...+ ..+.-.|..-+.+.+++++|.........
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 788888888888888888888887765 222222 22333355556677888887776666554
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=5.1e-13 Score=122.59 Aligned_cols=417 Identities=12% Similarity=0.041 Sum_probs=233.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPN-VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR 96 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (711)
+-+.-+-|.++|++++|.++|.++++. .|+ +.-|.....+|...|+++...+--.+.++.+|....+++.-..++-+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 334456688999999999999999986 577 77788888899999999999999999999999888899999999999
Q ss_pred cCCHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cC--CCCCHHHHHHHHHHhhccCChHH
Q 005161 97 LSLYEKAEEVIRLI-REDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMRE-AG--FSPNIVAYNTLMTGYGKVSNMEA 172 (711)
Q Consensus 97 ~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~ 172 (711)
.|++.+|+.=..-. +..++. |..+- .++.-..+. .|....++-.+ .+ +-|+.....+....+-.. +.
T Consensus 196 lg~~~eal~D~tv~ci~~~F~-n~s~~-~~~eR~Lkk----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~~- 266 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQ-NASIE-PMAERVLKK----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--PK- 266 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcc-cchhH-HHHHHHHHH----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--cc-
Confidence 99999987543322 122222 22121 122211111 12222222222 22 234444444333332110 00
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHH--hc---CCHHHHHHHHHHHHhc---CCCcc---------HhhHHHHHHHHH
Q 005161 173 AQRLFLSIKDVGLEPDETTYRSMIEGWG--RA---GNYREAKWYYKELKHL---GYKPN---------ASNLYTLINLHA 235 (711)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~---g~~~~A~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~ 235 (711)
..+. .+.......+..++- .. ..+.+|.+.+.+-... ....+ ..++....-.+.
T Consensus 267 -----~~~~----~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 267 -----PLFD----NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred -----cccc----CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 0000 011111111111111 01 1233343333322111 00111 112222222344
Q ss_pred cCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 005161 236 KYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKV 315 (711)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 315 (711)
-.|+.-++...|+..++..+.+...|..+...|...++.++-.+.|..+.+.++. |+.+|..-..++.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 5677778888888888887777777777777777777777777777777777766 666676666666667777777777
Q ss_pred HHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 005161 316 LGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIR 395 (711)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 395 (711)
|++....++. +...|..+..+..+.+.++.++..|++..+. ++..+..|+.....+..+++++.|.+.|+..++....
T Consensus 417 F~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 7776655443 3334555555555666677777777766654 3445566666666667777777777777666654211
Q ss_pred -----CCHHH--HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005161 396 -----LDLIA--FTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKI 460 (711)
Q Consensus 396 -----~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 460 (711)
.+... -..++..-. .+++..|+.+++...+.. +.....|..|...-.+.|+.++|+++|++.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred cccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 11111 111111111 255555555555553321 122334555555555555555555555443
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=6e-13 Score=130.97 Aligned_cols=553 Identities=11% Similarity=0.079 Sum_probs=286.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcC
Q 005161 105 EVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVG 184 (711)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (711)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34555667889999999999999999999999998 8888888777888889999999988888877776
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHH-HHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHH
Q 005161 185 LEPDETTYRSMIEGWGRAGNYREAKWYYKE-LKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGT 263 (711)
Q Consensus 185 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 263 (711)
.|.+.||..|..+|.+.|+... ++..++ |.. +...+...|.......++..+. ..+...+....
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~------------i~~sfs~~Gvgs~e~~fl~k~~-c~p~~lpda~n 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLES------------INQSFSDHGVGSPERWFLMKIH-CCPHSLPDAEN 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHH------------HHhhhhhhccCcHHHHHHhhcc-cCcccchhHHH
Confidence 4888999999999999998766 222222 221 2222222332222222221111 01111122333
Q ss_pred HHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCC
Q 005161 264 LLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGH 343 (711)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 343 (711)
.+......|.++.+.+++..+...... .+... +++-..... ....+++.......-.|++.++..++.+-..+|+
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Confidence 344444445555555555432211100 00000 122221111 1222222222222125777788888888888888
Q ss_pred hhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005161 344 LANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLET 423 (711)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 423 (711)
.+.|..++..|.+.|++.+.+-|..++-+ .++...+..+++-|.+.|+.|+..|+...+..+.++|....+..
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e---- 292 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE---- 292 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc----
Confidence 88888888888888888888777777644 77778888888888888888888888887777776544221111
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHHcC-----CH-----HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 005161 424 MEKQKDIEPDAYLYCDMLRIYQQCG-----ML-----DKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFD 493 (711)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~~~~~-----~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 493 (711)
..+....++.-+..-.-.| +. .-....+++..-.|......+|....... .+|.-+++.++-.
T Consensus 293 ------~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg 365 (1088)
T KOG4318|consen 293 ------GSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVG 365 (1088)
T ss_pred ------ccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHh
Confidence 1122222222222222222 11 11222222222234333334444333322 2566666666666
Q ss_pred HHHhCCC--C-ccHHHHHHHHHHHhccCcHHHHHHHHH--HHHHcCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHH--
Q 005161 494 EMLQHGF--T-PNIITLNVMLDIYGKAKLFKRVRKLFS--MAKKLGL--VDVISYNTIIAAYGQNKNLESMSSTVQEM-- 564 (711)
Q Consensus 494 ~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-- 564 (711)
.+..... . .+...+..++.-|.+.-+..-...++. +..+... .+..-..-++.-. ++..+..-+..+
T Consensus 366 ~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l----rkns~lr~lv~Lss 441 (1088)
T KOG4318|consen 366 QLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL----RKNSFLRQLVGLSS 441 (1088)
T ss_pred hhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh----CcchHHHHHhhhhH
Confidence 5553211 1 122223333332222111000000000 1111100 0000000000000 111111111111
Q ss_pred ---HHCCC------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 005161 565 ---QFDGF------SVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELK 635 (711)
Q Consensus 565 ---~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (711)
.+... .+-...-+.++..++..-+..+++..-+.....-+. ..|..|++-+......+.|..+.++..
T Consensus 442 ~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d 518 (1088)
T KOG4318|consen 442 TELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEID 518 (1088)
T ss_pred HHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhc
Confidence 11000 011122334455555555555555544444432111 567777777777777777777777765
Q ss_pred HC--CCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCC-cchHHHHHHHHHhcchHHHHHHHHHHHHHhCc
Q 005161 636 EC--GLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENG-IEPD-KITYTNMITALQRNDKFLEAIKWSLWMKQIGL 709 (711)
Q Consensus 636 ~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 709 (711)
.. .+..|..-+..+...+.+.+....+..+++++.+.- ..|+ ..+.-.+.+.....|+.+.-.+..+-+...|+
T Consensus 519 ~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 519 TRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred ccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 42 233445556777777777777777777777776521 1222 23344455555666666666666666555544
No 44
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.67 E-value=3.3e-10 Score=108.46 Aligned_cols=462 Identities=14% Similarity=0.056 Sum_probs=224.1
Q ss_pred hcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 005161 27 KRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEV 106 (711)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 106 (711)
..+.+...+.+.+.+++. .+....+.....-.+...|+.++|........+.++.+...|..++-.+....++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 444555555555555552 2333344443333445556666666666666655555555666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcC-C
Q 005161 107 IRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVG-L 185 (711)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~ 185 (711)
|+..+..+.. |...+.-+.-.-++.|+++.......++.+.. +.....|...+.++.-.|++..|..+.++..+.. -
T Consensus 98 y~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6665554433 44455444444445556665555555555542 2233445555555555566666665555554432 1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHH
Q 005161 186 EPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLL 265 (711)
Q Consensus 186 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 265 (711)
.|+...+.-....+-+ .......|..+.|.+.+......-.+.......-+
T Consensus 176 ~~s~~~~e~se~~Ly~-----------------------------n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka 226 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQ-----------------------------NQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKA 226 (700)
T ss_pred CCCHHHHHHHHHHHHH-----------------------------HHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHH
Confidence 2333333222111110 11222333333333333333222222223333344
Q ss_pred HHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHH-HHHHhhhhcCCCccHhhHHHHHHHHHccCC-
Q 005161 266 QAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAM-KVLGDKRWKDTVFEDNLYHLLICSCKDSGH- 343 (711)
Q Consensus 266 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 343 (711)
..+.+.+++++|..++...+..+|. |...|-.+..++.+..+..++. .+|....+.-+.. .....+-........
T Consensus 227 ~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~--e~p~Rlplsvl~~eel 303 (700)
T KOG1156|consen 227 DLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH--ECPRRLPLSVLNGEEL 303 (700)
T ss_pred HHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc--ccchhccHHHhCcchh
Confidence 4555555666666666655555443 3344444444443222222232 4444433322110 000000001111112
Q ss_pred hhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CC----------CCCCHHHHHH--HHHH
Q 005161 344 LANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKS----SG----------IRLDLIAFTV--VVRM 407 (711)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~~~--l~~~ 407 (711)
.+..-.++..+++.|+++- +..+...|-.....+-..++...+.. .| -+|....|+. ++..
T Consensus 304 ~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred HHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 2233344555566665543 22232222221111111111111111 10 1455555544 4566
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHH
Q 005161 408 YVKAGSLKDACAVLETMEKQKDIEPD-AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPID 486 (711)
Q Consensus 408 ~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 486 (711)
+-+.|+++.|...++....+ .|+ ...|..-.+.+...|+++.|..++++..+.. .+|...-..-.....+.++.+
T Consensus 381 ~D~~g~~~~A~~yId~AIdH---TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAIDH---TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHHcccHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccH
Confidence 77788888888888877544 344 3345555677788888888888888877765 234444445556666778888
Q ss_pred HHHHHHHHHHhCCCCccHH--------HHHHH--HHHHhccCcHHHHHHHHHHHHH
Q 005161 487 ELSRVFDEMLQHGFTPNII--------TLNVM--LDIYGKAKLFKRVRKLFSMAKK 532 (711)
Q Consensus 487 ~a~~~~~~~~~~~~~~~~~--------~~~~l--~~~~~~~~~~~~a~~~~~~~~~ 532 (711)
+|.++....-+.|. +.. +|-.+ ..+|.+.|++..|++-|..+.+
T Consensus 457 eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 457 EAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 88888887776653 111 11111 3456666777777666655544
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=2.4e-13 Score=134.19 Aligned_cols=289 Identities=12% Similarity=0.002 Sum_probs=172.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELV 141 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 141 (711)
..|+++.|++.+.+..+..+.+...+.....++.+.|+++.|.+.+.+..+..+.+...........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 57888888888888877776665666666777788888888888888876654333323333446677778888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHH-HHHH---HHHhcCCHHHHHHHHHHHHh
Q 005161 142 LVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYR-SMIE---GWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~---~~~~~g~~~~A~~~~~~~~~ 217 (711)
++.+.+.. |.++.++..+...+...|+++.|.+.++.+.+.++. +...+. .-.. +....+..+++.+.+..+.+
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88888775 346667777788888888888888888888876542 222221 1111 11222333333344444444
Q ss_pred cCC---CccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHH--HhcCCCCcHHHHHHHhhhccCCcc
Q 005161 218 LGY---KPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAY--EKAGRTDNVPRILKGSLYQHVLFN 292 (711)
Q Consensus 218 ~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~ 292 (711)
... +.+...+..+...+...|+.+.|...+++..+..+++......++..+ ...++.+.+.+.++.....+|. |
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~ 332 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-K 332 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-C
Confidence 321 125566666777777777777777777777776666552211111211 2234445555566555555444 4
Q ss_pred h--hHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHH
Q 005161 293 L--TSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSH 353 (711)
Q Consensus 293 ~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 353 (711)
. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 445556666666666666666665433333334444444555555555555555555554
No 46
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=5.9e-11 Score=104.63 Aligned_cols=256 Identities=9% Similarity=0.082 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH-----HcCCHHHHH
Q 005161 380 TEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQ-----QCGMLDKLS 454 (711)
Q Consensus 380 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~ 454 (711)
+.|++++-.+.+. .| ..-..++--|.+.+++++|..+.+++ .+..|-.+....+..+-. ......-|.
T Consensus 271 EgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl---~PttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 271 EGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDL---DPTTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred ccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhc---CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 4455555444432 12 22233444455666666666666655 222343333333332211 111233455
Q ss_pred HHHHHHHhcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 005161 455 YLYYKILKSGITWNQE-LYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKL 533 (711)
Q Consensus 455 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 533 (711)
..|+..-.++...|.. --..+.+++.-..++++++..+..+...-...|...+ .+.++++..|++.+|+++|-++...
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh
Confidence 5555444444333321 1223334444455667777766666654333344333 3566777777777777777766655
Q ss_pred CCCchhHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005161 534 GLVDVISYNT-IIAAYGQNKNLESMSSTVQEMQFDGFSVSLEA-YNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTY 611 (711)
Q Consensus 534 ~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 611 (711)
...+..+|.+ +.++|.+.+.++.|+.++-.+.. +.+... ...+..-|.+++.+--|.+.|+.+.. ..|++.-|
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 5555555544 45566777777777666544321 222222 23334556777777777777777765 35666655
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccC
Q 005161 612 NIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAG 657 (711)
Q Consensus 612 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 657 (711)
. |+--...-+|..+....-.|- .....-++......+
T Consensus 498 e---------GKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~ 535 (557)
T KOG3785|consen 498 E---------GKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKP 535 (557)
T ss_pred C---------CccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCC
Confidence 3 333344445555554333333 233444444444444
No 47
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.7e-11 Score=107.90 Aligned_cols=456 Identities=10% Similarity=-0.014 Sum_probs=257.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 005161 126 LNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNY 205 (711)
Q Consensus 126 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 205 (711)
+.-+....++..|..+++--...+-+....+-..+..++.+.|++++|...|..+.... .++...+..|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 33444566777777766655543322222333344556677788888888887766643 46666676676666677777
Q ss_pred HHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhh
Q 005161 206 REAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSL 285 (711)
Q Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 285 (711)
.+|..+-....+ ++-....+.+...+.++-++.....+.+.... +-..
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~----EdqL----------------------- 155 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL----EDQL----------------------- 155 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH----HHHH-----------------------
Confidence 777776655432 23333444555556666655555544443211 1112
Q ss_pred hccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHH-HHHHHccCChhhHHHHHHHHhhcCCCCcHH
Q 005161 286 YQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLL-ICSCKDSGHLANAVKIYSHMHICDGKPNLH 364 (711)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 364 (711)
+|.....-.-.+++|++++.++...++ +-...+.- .-+|.+..-++-+.+++.-.++. ++.++.
T Consensus 156 ------------SLAsvhYmR~HYQeAIdvYkrvL~dn~--ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdSti 220 (557)
T KOG3785|consen 156 ------------SLASVHYMRMHYQEAIDVYKRVLQDNP--EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTI 220 (557)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHhcCh--hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHH
Confidence 222222223345555555555544332 12223332 23455666666666666665554 233444
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHhcCCCCCcHHHHHH
Q 005161 365 IMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKA-----GSLKDACAVLETMEKQKDIEPDAYLYCD 439 (711)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 439 (711)
+.|.......+.=.-..|..-...+...+-. . | ..+.-+++. ..-+.|++++-.+.+. -|.. -..
T Consensus 221 A~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEA--RlN 290 (557)
T KOG3785|consen 221 AKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEA--RLN 290 (557)
T ss_pred HHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHh--hhh
Confidence 4554444444433333344444444443211 1 1 122223333 3457888888776443 3332 334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-----HccCCHHHHHHHHHHHHhCCCCccH-HHHHHHHHH
Q 005161 440 MLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCC-----ARALPIDELSRVFDEMLQHGFTPNI-ITLNVMLDI 513 (711)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 513 (711)
++--|.+.+++.+|..+.+++... .|.......+..+. ......+-|.+.|+..-..+..-|+ .--.++...
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 556688999999999988776422 33333333333221 1122345566777665555433332 223344555
Q ss_pred HhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 005161 514 YGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFK 593 (711)
Q Consensus 514 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (711)
+.-..++++.+-.+..+..-...|...--.+.++++..|++.+|.++|-.+....++.+..-...+.++|.+++.++.|+
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 56667788888888888877776666666788999999999999999988765544434334455667888999998887
Q ss_pred HHHHHHHHcCCCCCHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHCCCCCChHhH
Q 005161 594 NVLRRMKETSCTFDHYTYNIM-IDIYGEQGWINEVVGVLTELKECGLRPDLCSY 646 (711)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 646 (711)
.++-++. -+.+..+.-.+ .+-|.+.+.+=-|-+.|+.+.. ..|++..|
T Consensus 449 ~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 449 DMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 7665543 23344443333 4678888888888888887766 46776655
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=5.3e-13 Score=131.82 Aligned_cols=297 Identities=12% Similarity=-0.023 Sum_probs=222.6
Q ss_pred hHHHHHHHHH--hcCChHHHHHHHHHHhHcCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch-hHHHHHHH
Q 005161 17 LFNTLIYACN--KRGCVELGAKWFHMMLECDVQPNVA-TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE-SAYSAMIT 92 (711)
Q Consensus 17 ~~~~~l~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~ 92 (711)
....+.++.. ..|++..|.+.+....+.. |+.. .+.....+..+.|+.+.|.+.+..+.+..|.+. ........
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 3444555544 6899999999999887753 4433 334446677889999999999999988777654 34555689
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHH---hhccC
Q 005161 93 IYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNT-LMTG---YGKVS 168 (711)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~---~~~~~ 168 (711)
.+...|+++.|...++.+.+..+. +..++..+...+.+.|++++|.+.+..+.+.+.. +...+.. -..+ ....+
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998765 6778889999999999999999999999998654 3332321 1111 12222
Q ss_pred ChHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhh--H-HHHHHHHHcCCCHHH
Q 005161 169 NMEAAQRLFLSIKDVGL---EPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASN--L-YTLINLHAKYEDEEG 242 (711)
Q Consensus 169 ~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~~~~~~ 242 (711)
..+...+.+..+.+..+ +.+...+..++..+...|++++|.+.+++..+.. |+... + ..........++.+.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHH
Confidence 23333334444443321 1377888899999999999999999999999863 33331 1 112222344578899
Q ss_pred HHHHHHHHHHCCCCCh--hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 005161 243 AVNTLDDMLNMGCQHS--SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDK 319 (711)
Q Consensus 243 a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 319 (711)
+...++...+..|.+. .....++..+.+.|++++|.+.|+.+......|+...+..+...+.+.|+.++|.+++++.
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999988 8888999999999999999999995444334567777889999999999999999998864
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=1.3e-15 Score=142.81 Aligned_cols=260 Identities=18% Similarity=0.147 Sum_probs=81.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhHcC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC
Q 005161 20 TLIYACNKRGCVELGAKWFHMMLECD-VQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS 98 (711)
Q Consensus 20 ~~l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 98 (711)
.+...+.+.|+++.|++++....... .+.+...|..+..+....++++.|...++++...++.....+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44555666677777777665444433 233333344444455556667777777777666665555555555555 5666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 99 LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAG-FSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
++++|.++++...+.. +++..+...+..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.|
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6777766666544432 344445556666666677777666666655432 2345566666666666667777777777
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 005161 178 LSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQH 257 (711)
Q Consensus 178 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 257 (711)
++..+..+ .|....+.++..++..|+.+++..+++...... ..|+..+..+..++...|+.++|...+++..+..+..
T Consensus 170 ~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 170 RKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 66666432 235556666666666666666666666655542 3344455556666666666666666666666666655
Q ss_pred hhHHHHHHHHHHhcCCCCcHHHHHHHh
Q 005161 258 SSILGTLLQAYEKAGRTDNVPRILKGS 284 (711)
Q Consensus 258 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 284 (711)
..+...++..+...|+.++|..+.+++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 555556666666666666665555443
No 50
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=9.4e-13 Score=129.20 Aligned_cols=221 Identities=11% Similarity=0.029 Sum_probs=109.6
Q ss_pred HhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccH-------hhHHHHHHHHH
Q 005161 163 GYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNA-------SNLYTLINLHA 235 (711)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 235 (711)
.+...|+++.|...++++.+..+ .+......+...|.+.|++++|.+++..+.+.+..++. .+|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443321 22333334444444444444444444444433222111 11222222222
Q ss_pred cCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 005161 236 KYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKV 315 (711)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 315 (711)
...+.+...++++.+.+..+........++..+...|+.+.|.+++++.....+. .. ..++......++.+++++.
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~--~~--l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD--ER--LVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--HH--HHHHHhhccCCChHHHHHH
Confidence 2333344444444444333334455555555555555555555555555553222 21 1122222334666666666
Q ss_pred HHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 316 LGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKS 391 (711)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 391 (711)
++...+..+. +...+..+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 317 ~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 317 LRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666555443 4445556666666667777777777666654 46666666777777777777777777766543
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=9.8e-13 Score=114.27 Aligned_cols=289 Identities=15% Similarity=0.177 Sum_probs=169.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHhhccCCh
Q 005161 97 LSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIV------AYNTLMTGYGKVSNM 170 (711)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~ 170 (711)
.++.++|.++|.+|.+.++. +..+-..+.+.|.+.|..|+|.++++.+.++ ||.. ....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 35677777777777775543 4455566677777777777777777777764 3322 223344445555555
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 005161 171 EAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDM 250 (711)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (711)
+.|+.+|..+.+.+. --......|+..|-...++++|.+.-+++...+-++...- +.
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---IA------------------- 180 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---IA------------------- 180 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---HH-------------------
Confidence 555555555554221 1222334444445455555555555554444432222110 00
Q ss_pred HHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhh
Q 005161 251 LNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNL 330 (711)
Q Consensus 251 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 330 (711)
.++-.++..+....+++.|...++++...++. .+.+--.+.+.+...|+++.|.+.++.+.+.++..-+.+
T Consensus 181 --------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 181 --------QFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred --------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 23344455555556666666666666666555 556666777788888888888888888888877766777
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005161 331 YHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVK 410 (711)
Q Consensus 331 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (711)
...|..+|.+.|+.++...++..+.+.. +....-..+...-....-.+.|...+.+-..+ .|+...+..++.....
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhc
Confidence 7777888888888888888887776653 33333333333333444455555555444443 5777777777776554
Q ss_pred c---CChHHHHHHHHHHH
Q 005161 411 A---GSLKDACAVLETME 425 (711)
Q Consensus 411 ~---~~~~~A~~~~~~~~ 425 (711)
. |...+-+..++.|.
T Consensus 328 daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 328 DAEEGRAKESLDLLRDMV 345 (389)
T ss_pred cccccchhhhHHHHHHHH
Confidence 3 33455555555553
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=1.7e-12 Score=127.47 Aligned_cols=285 Identities=11% Similarity=0.029 Sum_probs=171.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005161 63 SWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVL 142 (711)
Q Consensus 63 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 142 (711)
.|+++.|++.+....+....+...+........+.|+++.|.+.+.++.+..+.+...........+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 57777777666665554322222333334444666777777777777665443322222223355666677777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 143 VSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDE-------TTYRSMIEGWGRAGNYREAKWYYKEL 215 (711)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~ 215 (711)
+.+.+.. +.++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 7776664 335666666667777777777777777777665443222 12333333333334444455555544
Q ss_pred HhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhH
Q 005161 216 KHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTS 295 (711)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 295 (711)
.+. .+.++.....+...+...|+.++|...+++..+..+.+. ...+...+..++.+++.+..+.....+|. |...
T Consensus 256 p~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~---l~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l 330 (398)
T PRK10747 256 SRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDER---LVLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLL 330 (398)
T ss_pred CHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH---HHHHHhhccCCChHHHHHHHHHHHhhCCC-CHHH
Confidence 332 233555666667777777777777777777766433221 11222233446677777777777777665 6677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHh
Q 005161 296 CSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMH 355 (711)
Q Consensus 296 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 355 (711)
+..+...+.+.+++++|.+.|+...... |+...+..+...+.+.|+.++|.+++++-.
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777888888888888887776553 566666777777778888888888777664
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=2.7e-15 Score=140.65 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005161 541 YNTIIAAYGQNKNLESMSSTVQEMQFD-GFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYG 619 (711)
Q Consensus 541 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (711)
+..++..+...++++++..+++.+... ..+.+...|..+...+.+.|+.++|.+.+++.++.. +.|......++..+.
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLI 191 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHC
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 333344444444444444444443322 122344444445555555555555555555555431 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcchHHHHH
Q 005161 620 EQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEP-DKITYTNMITALQRNDKFLEAI 698 (711)
Q Consensus 620 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~ 698 (711)
..|+.+++.++++...+.. +.|+..+..+..+|...|++++|+..+++..+ ..| |+.+...+..++...|+.++|.
T Consensus 192 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHT---------
T ss_pred HCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc--cccccccccccccccccccccccccc
Confidence 5555555555555544421 23344445555555555555555555555544 333 3444455555555555555555
Q ss_pred HHHHHH
Q 005161 699 KWSLWM 704 (711)
Q Consensus 699 ~~~~~m 704 (711)
++++++
T Consensus 269 ~~~~~~ 274 (280)
T PF13429_consen 269 RLRRQA 274 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 554443
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.5e-11 Score=112.33 Aligned_cols=286 Identities=10% Similarity=-0.009 Sum_probs=198.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 005161 396 LDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCV 475 (711)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 475 (711)
-+......-..-+....++.+..++.+.+.+..+ +....+..-|.++...|+..+...+=.++.+.- +-.+.+|-++
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp--fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDP--FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC--CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 3455555566666677788888888877765543 334444455557777777776666666666553 3355667777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 476 INCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLE 555 (711)
Q Consensus 476 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 555 (711)
..-|...|+..+|.+.|.+....+ +.=...|-.....|+-.|..++|...+..+.+.-+.....+--+..-|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 777777788888888887776532 1123456666777788888888888888777766644444445566677788888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 005161 556 SMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET------SCTFDHYTYNIMIDIYGEQGWINEVVG 629 (711)
Q Consensus 556 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 629 (711)
.|.++|.+.... .|.|+...+-+.-.....+.+.+|..+|+..+.. .......+++.|..+|.+.+.+++|+.
T Consensus 398 LAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 888888887765 3666777777777777778888888888876621 011244567888888888888888888
Q ss_pred HHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005161 630 VLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQ 689 (711)
Q Consensus 630 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 689 (711)
.+++.+.. .+.+..++.++.-+|...|+++.|++.|.+..- +.|+..+...++..+.
T Consensus 477 ~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 477 YYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 88888874 244578888888888888888888888888876 7887766555555443
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.2e-11 Score=111.45 Aligned_cols=286 Identities=13% Similarity=0.042 Sum_probs=206.3
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHH
Q 005161 360 KPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCD 439 (711)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 439 (711)
..+.........-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.. +....+|-.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~a 317 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFA 317 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhh
Confidence 3445555556666777788888888888887763 4455555556667777777766666666665543 445667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCc
Q 005161 440 MLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKL 519 (711)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 519 (711)
+.--|...|..++|.+.|.+....+.. -...|-.+...++-.+..+.|+..+....+.- +-....+--+.--|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhcc
Confidence 777777788888888888877655432 23456777778888888888888877766531 1111111222334777888
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCChhhHHHHHHHHHhcCCHHHHH
Q 005161 520 FKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFD----G--FSVSLEAYNSMLDAYGKEGQMENFK 593 (711)
Q Consensus 520 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (711)
.+-|.++|.++....|.|+...+-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+.+++|+
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999999988888888888888888888888888898888876632 1 1113456788889999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 005161 594 NVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAY 653 (711)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 653 (711)
..+++.+.. .+.+..++.++.-.|...|+++.|.+.|.+... +.|+..+-..++..+
T Consensus 476 ~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 999998876 466888899999999999999999999999886 678866555555433
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=2.8e-13 Score=129.63 Aligned_cols=289 Identities=15% Similarity=0.098 Sum_probs=171.0
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005161 65 NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV--PNLENWLVMLNAYSQQGKLEEAELVL 142 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 142 (711)
+.++|...|.+++.+.+........+.++|...+++++|..+|+.+.+..+. -+.+.|...+-.+-+ .++. --+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--~v~L-s~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--EVAL-SYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh--hHHH-HHHH
Confidence 4455666666655554444444455566666666666666666666553311 133444444432211 1110 1111
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 005161 143 VSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP 222 (711)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 222 (711)
+.++... +..+.+|-.+..+|+-+++.+.|.+.|++..+.++ ..+.+|+.+..-+.....++.|...|+..+.....
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 2222221 33566677777777777777777777776665331 25566666666666666777777777666543111
Q ss_pred cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHH
Q 005161 223 NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMA 302 (711)
Q Consensus 223 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (711)
+-..|..+.-.|.+.++++.|+-.|+.+.+..|.+..+...+...+.+.|+.|+|+.+++++...++. |+..-..-+..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~i 566 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASI 566 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence 12234445556667777777777777777777766666666777777777777777777777666665 55555566666
Q ss_pred HHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCC
Q 005161 303 YVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKP 361 (711)
Q Consensus 303 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 361 (711)
+...+++++|+..|+++++.-+. +...+..+...|.+.|+.+.|+.-|..+.+.+.++
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 67777777777777777655433 34456667777777777777777777776654333
No 57
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.1e-11 Score=111.45 Aligned_cols=292 Identities=12% Similarity=0.078 Sum_probs=224.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHc
Q 005161 404 VVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGI--TWNQELYDCVINCCAR 481 (711)
Q Consensus 404 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 481 (711)
+..++-.....+++.+-.... ...|++.+...-+....+.....++|+|+.+|+++.+..+ --|..+|+.++-. +
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l-~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~ 309 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERL-SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--K 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--H
Confidence 344455556777777777776 4455666666666666677788999999999999998842 1255667666533 3
Q ss_pred cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 005161 482 ALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTV 561 (711)
Q Consensus 482 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 561 (711)
..+. .+.++.+-.-.--+-.+.|...+.+.|.-.++.++|...|+++.+.+|....+|+.+..-|...++...|++-+
T Consensus 310 ~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 310 NDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 2221 12222222111112344566777888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC
Q 005161 562 QEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRP 641 (711)
Q Consensus 562 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 641 (711)
+..++-+ |.|-..|-.+.++|.-.+...-|+-.|++..+. -+-|...|.+|..+|.+.++.++|++.|++....| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9999885 778899999999999999999999999999985 25688899999999999999999999999999864 34
Q ss_pred ChHhHHHHHHHHhccCChHHHHHHHHHHHH----cCC-CCC-cchHHHHHHHHHhcchHHHHHHHHHH
Q 005161 642 DLCSYNTLIKAYGIAGMVEDAVGLVKEMRE----NGI-EPD-KITYTNMITALQRNDKFLEAIKWSLW 703 (711)
Q Consensus 642 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 703 (711)
+...+..|+..|.+.++.++|...|++..+ .|. .|. .....-|..-+.+.+++++|..+...
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 668899999999999999999999998775 232 332 23344466667778888887765544
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=5.5e-12 Score=109.71 Aligned_cols=290 Identities=14% Similarity=0.068 Sum_probs=189.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 005161 63 SWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPN---LENWLVMLNAYSQQGKLEEAE 139 (711)
Q Consensus 63 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~ 139 (711)
+.+.+.|.++|-.|.+.++...++-.+|.+.|.+.|..+.|+.+-+.+.++.-.+. ..+.-.+..-|.+.|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 46789999999999999998888999999999999999999999999877532211 123456777888899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhh----HHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 140 LVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETT----YRSMIEGWGRAGNYREAKWYYKEL 215 (711)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~ 215 (711)
++|..+...+ .--......|+..|-...++++|..+-+++.+.+..+...- |.-+...+....++++|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999998754 33556778899999999999999999999988654332211 222333333334455555555554
Q ss_pred HhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhH
Q 005161 216 KHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTS 295 (711)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 295 (711)
.+ .++.....-..+.+.+...|+++.|.+.++.+.+.++..-..+
T Consensus 207 lq-----------------------------------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 207 LQ-----------------------------------ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred Hh-----------------------------------hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 44 4444443334444445555555555555555555554444555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHc
Q 005161 296 CSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSV 375 (711)
Q Consensus 296 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (711)
...|..+|.+.|+.++....+.++.+....++. -..+........-.+.|...+.+.+.. +|+...+..++..-..
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhc
Confidence 666677777777777777777766655444332 222222223334455555555555543 7888888888876543
Q ss_pred ---cCCHHHHHHHHHHHHhC
Q 005161 376 ---MGMFTEAEKLYLNLKSS 392 (711)
Q Consensus 376 ---~~~~~~a~~~~~~~~~~ 392 (711)
.|...+....++.|...
T Consensus 328 daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 328 DAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cccccchhhhHHHHHHHHHH
Confidence 33455556666666543
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=6e-13 Score=127.46 Aligned_cols=287 Identities=11% Similarity=0.015 Sum_probs=221.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhhccCChHHHHHH
Q 005161 99 LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGF--SPNIVAYNTLMTGYGKVSNMEAAQRL 176 (711)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 176 (711)
+.++|...|+.....-.. +.+....+..+|...+++++|+.+|+.+.+..+ -.+..+|.+.+--+- + +-++..
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHHH
Confidence 457888999885544333 457778888999999999999999999887631 125566766654332 1 112222
Q ss_pred H-HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 005161 177 F-LSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP-NASNLYTLINLHAKYEDEEGAVNTLDDMLNMG 254 (711)
Q Consensus 177 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 254 (711)
+ +.+.+.. +-.+.+|.++..+|.-+++.+.|++.|++..+. .| ..++|..+..-+....++|.|...|...+...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 2 2333322 246788999999999999999999999998875 34 56788888888888899999999999999888
Q ss_pred CCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHH
Q 005161 255 CQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLL 334 (711)
Q Consensus 255 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 334 (711)
+..-..+..+...|.+.++++.|+-.|+++++-+|. +......+...+.+.|+.++|+.++++....+++ ++..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 888888899999999999999999999999988887 7778888888899999999999999988777665 44444455
Q ss_pred HHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 005161 335 ICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRL 396 (711)
Q Consensus 335 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 396 (711)
...+...++.++|+..++++.+. ++.+...+..+...|.+.|+.+.|+.-|..+.+...++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 66677789999999999998775 34556677888889999999999998888888765443
No 60
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.58 E-value=1.6e-09 Score=103.90 Aligned_cols=462 Identities=12% Similarity=0.065 Sum_probs=285.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHc
Q 005161 157 YNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAK 236 (711)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (711)
+..++..| ..+++...++..+.+.+..+ --..|.....-.+...|+-++|.+..+.....++. +.+.|+.+.-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~~-eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKFP-EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhCC-ccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 34444443 45667777766666665321 22333333344455667788888777777665443 55667777777777
Q ss_pred CCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 005161 237 YEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVL 316 (711)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 316 (711)
..++++|...+..+...++.+.+++..+.-...+.++++.....-...+...+. ....|..++.++.-.|+...|..++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888888888888887777888887777777666665544 6677888888888889999999988
Q ss_pred HhhhhcC-CCccHhhHHHHH------HHHHccCChhhHHHHHHHHhhcCCCCcHHH-HHHHHHHHHccCCHHHHHHHHHH
Q 005161 317 GDKRWKD-TVFEDNLYHLLI------CSCKDSGHLANAVKIYSHMHICDGKPNLHI-MCTMIDTYSVMGMFTEAEKLYLN 388 (711)
Q Consensus 317 ~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~ 388 (711)
+...... ..|+...+.... ......|..+.|.+.+..-... ..|... -..-...+.+.+++++|..++..
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 8876654 345554444332 3345678888888777665432 122222 23445667889999999999999
Q ss_pred HHhCCCCCCHHHHHHH-HHHHHHcCChHHHH-HHHHHHHhcCCCCCcHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCC
Q 005161 389 LKSSGIRLDLIAFTVV-VRMYVKAGSLKDAC-AVLETMEKQKDIEPDAYLYCDM-LRIYQQCGMLDKLSYLYYKILKSGI 465 (711)
Q Consensus 389 ~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~ 465 (711)
++.. .||...|... ..++.+-.+.-+++ .+|....+. .|....-..+ ++......-.+....++....+.|+
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~---y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK---YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc---CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 9987 3666655544 44443343444444 666665332 2221111111 1111112223344556666677776
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHh----CC----------CCccHHHHHH--HHHHHhccCcHHHHHHHHHH
Q 005161 466 TWNQELYDCVINCCARALPIDELSRVFDEMLQ----HG----------FTPNIITLNV--MLDIYGKAKLFKRVRKLFSM 529 (711)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~ 529 (711)
++ ++..+...|-.....+-..++.-.+.. .| -+|+...|.. ++..|-..|+++.|...++.
T Consensus 320 p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 53 333444333322221111111111111 10 1455554443 56667888999999999999
Q ss_pred HHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 005161 530 AKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHY 609 (711)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (711)
+....|.-+..|..-.+.+.+.|++++|..++++..+.+ .+|...-..-.....++++.++|.++.....+.|. +..
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~ 473 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAV 473 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chh
Confidence 888877777777777888899999999999999888764 44544444556666788899999999888887653 211
Q ss_pred --------HHHHH--HHHHhhcCCHHHHHHHHHHHH
Q 005161 610 --------TYNIM--IDIYGEQGWINEVVGVLTELK 635 (711)
Q Consensus 610 --------~~~~l--~~~~~~~g~~~~A~~~~~~~~ 635 (711)
+|..+ ..+|.+.|++-.|++-|..+-
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 33333 245667777766666555544
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=1.6e-10 Score=104.19 Aligned_cols=294 Identities=12% Similarity=0.044 Sum_probs=174.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005161 63 SWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVL 142 (711)
Q Consensus 63 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 142 (711)
.|++..|+++..+..+.+..+...|..-+.+--+.|+.+.+-.++.++.+....++........+.....|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 56777777777776666666555566666666666777777777776665533445555666666666677777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 005161 143 VSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP 222 (711)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 222 (711)
.++.+.+ +.++.+......+|.+.|++.....++..+.+.+.-.|...-. .
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l 227 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L 227 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence 7666664 3355566666667777777777777777776665433322100 0
Q ss_pred cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHH
Q 005161 223 NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMA 302 (711)
Q Consensus 223 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (711)
...++..+++-....++.++-.+.++.....--....+...++.-+...|+.++|.++.++.+++.-.++ -...-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 1123444444444444444444444444443333345555566666666666666666666666554433 111112
Q ss_pred HHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHH
Q 005161 303 YVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEA 382 (711)
Q Consensus 303 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 382 (711)
..+-++...-++..+......+. ++..+..+...|.+++.+.+|...|+..++. .|+..+|+.+.+++.+.|+..+|
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHH
Confidence 33445555555555544333222 3356667777777777777777777766553 57777888888888888888888
Q ss_pred HHHHHHHHhC
Q 005161 383 EKLYLNLKSS 392 (711)
Q Consensus 383 ~~~~~~~~~~ 392 (711)
.+..++....
T Consensus 381 ~~~r~e~L~~ 390 (400)
T COG3071 381 EQVRREALLL 390 (400)
T ss_pred HHHHHHHHHH
Confidence 8777766543
No 62
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.54 E-value=6.5e-09 Score=104.63 Aligned_cols=364 Identities=11% Similarity=0.011 Sum_probs=184.9
Q ss_pred HHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 005161 311 DAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLK 390 (711)
Q Consensus 311 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 390 (711)
.|+..+.+.....-. +..+|+.|.-. ...|++.-+...|-.-.... +....+|..+.-.+....+++.|...|....
T Consensus 801 ~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 445555444332211 33455554433 44566666666665544332 4455677777777777788888888888777
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH---HHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 005161 391 SSGIRLDLIAFTVVVRMYVKAGSLKDACAVLET---MEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKS---- 463 (711)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 463 (711)
... +.+...|..........|+.-++..+|.. +....+-.|....|.........+|+.+.-+...+.+-..
T Consensus 878 SLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 653 23455555555555556777777777754 2222333444444444444555666655443333322111
Q ss_pred -----CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCccHHHHH----HHHHHHhccCcHHHHHHHHHHHHHc
Q 005161 464 -----GITWNQELYDCVINCCARALPIDELSRVFDEMLQH-GFTPNIITLN----VMLDIYGKAKLFKRVRKLFSMAKKL 533 (711)
Q Consensus 464 -----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~ 533 (711)
+.+.+...|........+.+.+..|.+...+.... ....+...++ .....+...|.++.|..-+......
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 22334555666666666666666666555544310 0012222333 2233445556666554433211110
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005161 534 GLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDG-FSVSL-EAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTY 611 (711)
Q Consensus 534 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 611 (711)
.+..+...-+. ..-.++++++.+.|+++.... -..+. .....++-+....+..+.|...+-+.... -+|+..+.
T Consensus 1037 --vdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sl 1112 (1238)
T KOG1127|consen 1037 --VDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASSL 1112 (1238)
T ss_pred --HHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-CccchhhH
Confidence 01111111111 134577888888888876541 11221 23344444555667777787777766654 25666655
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhH---HHHHHHHhccCChHHHHHHHHHHHHcCCCC-CcchHHHHH
Q 005161 612 NIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSY---NTLIKAYGIAGMVEDAVGLVKEMRENGIEP-DKITYTNMI 685 (711)
Q Consensus 612 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 685 (711)
-.+...+.-..+-.....+.+++... .+.....| -..=..|.+.|+-....+.+++..- ..| |+..|..|-
T Consensus 1113 l~L~A~~ild~da~~ssaileel~kl-~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h--~~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1113 LPLPAVYILDADAHGSSAILEELEKL-LKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVH--SNPGDPALWSLLS 1187 (1238)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHh-hhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHh--cCCCChHHHHHHH
Confidence 55555555444444444444444331 00000011 1112345577777777788888775 556 556666554
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.54 E-value=9.4e-11 Score=105.68 Aligned_cols=286 Identities=12% Similarity=0.070 Sum_probs=146.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005161 375 VMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLS 454 (711)
Q Consensus 375 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 454 (711)
..|++..|++......+.+-. ....|..-.++--..|+.+.+-.++.+..+. .-.++....-+........|+.+.|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchhHH
Confidence 357777777777776665432 2233444444555567777777777776332 22344445555556666677777777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccH-------HHHHHHHHHHhccCcHHHHHHHH
Q 005161 455 YLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNI-------ITLNVMLDIYGKAKLFKRVRKLF 527 (711)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 527 (711)
.-+.++.+.+.. ++.+......+|.+.|++.....++..+.+.+.-.+. .++..+++-....+..+.-...+
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 766666666532 4556666666777777777777777777666543332 22333333333333333333333
Q ss_pred HHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005161 528 SMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFD 607 (711)
Q Consensus 528 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (711)
+.....-..++..-.+++.-+.+.|+.++|.++..+..+++..|+. ...-.+.+-++.+.-.+..+...+. .+.+
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 3333332234444445555555555555555555555554443331 1111233344444444444444332 2233
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHH
Q 005161 608 HYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 670 (711)
+..+.+|...|.+.+.|.+|...|+..++ ..|+..+|+.+..++...|++.+|.+..++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 34455555555555555555555554444 34555555555555555555555555555443
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.2e-09 Score=98.80 Aligned_cols=293 Identities=10% Similarity=0.018 Sum_probs=162.0
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHH
Q 005161 410 KAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELS 489 (711)
Q Consensus 410 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 489 (711)
..++...|...+-.+.....++.|+.....+..++...|+.++|...|++....++- +........-.+.+.|+.+...
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHH
Confidence 344555555555444444445556666666666666666666666666665544210 1111111112233455555555
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005161 490 RVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGF 569 (711)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 569 (711)
.+...+.... .-+...|-.-.......++++.|+.+-++..+.++.+...+..-...+...|++++|.-.|+..+...
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 5555544321 11222222222333445666666666666666666666666666666666666666666666665542
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhhcC-CHHHHHHHHHHHHHCCCCCC-hHhH
Q 005161 570 SVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMI-DIYGEQG-WINEVVGVLTELKECGLRPD-LCSY 646 (711)
Q Consensus 570 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g-~~~~A~~~~~~~~~~~~~p~-~~~~ 646 (711)
|-+...|.-|+..|...|++.+|.-.-+...+. ++.+..+...+. ..|.-.. --++|.+++++... +.|+ ....
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHH
Confidence 445666666677666666666666655555443 333444444442 3333222 23566666666555 4565 5556
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHHHHHHHhCcC
Q 005161 647 NTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMKQIGLQ 710 (711)
Q Consensus 647 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 710 (711)
+.+...+...|..++++.++++... ..||......|...+...+.+++|.+.|....+.+++
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 6666666666777777777666665 5666666666666666666677776666666555544
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.52 E-value=5.2e-09 Score=102.64 Aligned_cols=481 Identities=12% Similarity=0.029 Sum_probs=295.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHhhHHHHHH---HHHcCCCHHHHHHHHHHHHHCCCCCh----hHHHHHHH--HHHhc
Q 005161 201 RAGNYREAKWYYKELKHLGYKPNASNLYTLIN---LHAKYEDEEGAVNTLDDMLNMGCQHS----SILGTLLQ--AYEKA 271 (711)
Q Consensus 201 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~--~~~~~ 271 (711)
..++.+.+..-+......+...+..++..+.. .|...++.+++ ++-.++....-+. ++...++. -..+.
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~ 316 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRL 316 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 34666777777777776666666666555544 34455666665 3333333222222 22222221 22222
Q ss_pred CCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHH
Q 005161 272 GRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIY 351 (711)
Q Consensus 272 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 351 (711)
+++ .-|...|..+.-+....|+++.+.+.|++....-.. ....|..+..++...|.-..|..++
T Consensus 317 ~~~---------------qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll 380 (799)
T KOG4162|consen 317 KKF---------------QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLL 380 (799)
T ss_pred hhh---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHH
Confidence 222 236667777888888899999999999887654333 4567888888888899988899888
Q ss_pred HHHhhcCCCC-cHHHHHHHHHHH-HccCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHHc-----------CCh
Q 005161 352 SHMHICDGKP-NLHIMCTMIDTY-SVMGMFTEAEKLYLNLKSS--GI--RLDLIAFTVVVRMYVKA-----------GSL 414 (711)
Q Consensus 352 ~~~~~~~~~~-~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~ 414 (711)
+.-......| +...+...-..| .+.+..++++..-.++.+. +. ......|..+.-+|... ...
T Consensus 381 ~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h 460 (799)
T KOG4162|consen 381 RESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALH 460 (799)
T ss_pred HhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHH
Confidence 8765443223 333343333444 3456777777666666552 11 12334444444444322 124
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 005161 415 KDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDE 494 (711)
Q Consensus 415 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 494 (711)
.++++.+++..+..+..|++..|.. --|+..++++.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+.
T Consensus 461 ~kslqale~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 5677788887666555565544443 34667788999999999999987777888898888888889999999999887
Q ss_pred HHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--C-------chhHHHHHHHHHHhcCCHHHHHHHHHH--
Q 005161 495 MLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL--V-------DVISYNTIIAAYGQNKNLESMSSTVQE-- 563 (711)
Q Consensus 495 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~-- 563 (711)
....- ..|......-+..-...++.+++......+...-. + .......-.......++..++.+....
T Consensus 539 al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 539 ALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 77531 11111111112222234555555444433221100 0 000000000000000111111111111
Q ss_pred ---------------HHHCCCCCC--------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 005161 564 ---------------MQFDGFSVS--------LEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGE 620 (711)
Q Consensus 564 ---------------~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (711)
+...-..|. ...|......+.+.+..++|...+.+.... .+-....|......+..
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEV 696 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHH
Confidence 111111111 223445566777888889998888887764 34456677777788888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHH--HHHHHHHcCCCC-CcchHHHHHHHHHhcchHHH
Q 005161 621 QGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVG--LVKEMRENGIEP-DKITYTNMITALQRNDKFLE 696 (711)
Q Consensus 621 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~ 696 (711)
.|.+.+|.+.|..... +.|+ +.+..++..++...|+..-|.. ++..+.+ +.| +...|..++..+.+.|+.++
T Consensus 697 ~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHH
Confidence 9999999999999887 6787 7889999999999999888888 8999988 778 56899999999999999999
Q ss_pred HHHHHHHHHHh
Q 005161 697 AIKWSLWMKQI 707 (711)
Q Consensus 697 A~~~~~~m~~~ 707 (711)
|.+.|.-..+.
T Consensus 773 Aaecf~aa~qL 783 (799)
T KOG4162|consen 773 AAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHhh
Confidence 99999877653
No 66
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.51 E-value=9.1e-09 Score=100.04 Aligned_cols=551 Identities=15% Similarity=0.110 Sum_probs=276.2
Q ss_pred HHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH--------------------cCCCc
Q 005161 24 ACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRK--------------------LGLVC 83 (711)
Q Consensus 24 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------~~~~~ 83 (711)
+....|+++.|..+++... .| +.....|..+..+-...|++--|++-|..+-. .+...
T Consensus 453 aaid~~df~ra~afles~~-~~-~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdg 530 (1636)
T KOG3616|consen 453 AAIDDGDFDRATAFLESLE-MG-PDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDG 530 (1636)
T ss_pred cccccCchHHHHHHHHhhc-cC-ccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCC
Confidence 4457789999988887763 33 23345666666665666666555555543321 11111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTG 163 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (711)
..-|-.-...-.-..++.+|..+|-+ + | .....|..|....++++|..+-+. .|.+.-...-.+.+.+
T Consensus 531 t~fykvra~lail~kkfk~ae~ifle--q-----n--~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~ 598 (1636)
T KOG3616|consen 531 TDFYKVRAMLAILEKKFKEAEMIFLE--Q-----N--ATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQA 598 (1636)
T ss_pred chHHHHHHHHHHHHhhhhHHHHHHHh--c-----c--cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHH
Confidence 11121111111222345555555432 1 1 122345556666667766654332 2323333344555666
Q ss_pred hhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHH
Q 005161 164 YGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGA 243 (711)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 243 (711)
++..|+-++|-++- . .|..+ .+.|+.|.+.|.+.+|......-.. +..|......+..++.+..-++.|
T Consensus 599 l~dt~qd~ka~elk----~----sdgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydka 667 (1636)
T KOG3616|consen 599 LMDTGQDEKAAELK----E----SDGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKA 667 (1636)
T ss_pred HHhcCchhhhhhhc----c----ccCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhh
Confidence 66677766665442 1 12222 3457778888888777665432211 122444444444444444444444
Q ss_pred HHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcC
Q 005161 244 VNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKD 323 (711)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 323 (711)
-.+|+++.. +...+..+-+-+-+..|.++-+-+....+. ..-......+...|+++.|+..|-+..
T Consensus 668 gdlfeki~d--------~dkale~fkkgdaf~kaielarfafp~evv---~lee~wg~hl~~~~q~daainhfiea~--- 733 (1636)
T KOG3616|consen 668 GDLFEKIHD--------FDKALECFKKGDAFGKAIELARFAFPEEVV---KLEEAWGDHLEQIGQLDAAINHFIEAN--- 733 (1636)
T ss_pred hhHHHHhhC--------HHHHHHHHHcccHHHHHHHHHHhhCcHHHh---hHHHHHhHHHHHHHhHHHHHHHHHHhh---
Confidence 444444432 111111222222222333322222111111 111122334455666777766654321
Q ss_pred CCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005161 324 TVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTV 403 (711)
Q Consensus 324 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 403 (711)
.....+.+......+.+|+.+++.+.... ....-|..+.+.|...|+++.|.++|.+.- .++-
T Consensus 734 ------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~d 796 (1636)
T KOG3616|consen 734 ------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKD 796 (1636)
T ss_pred ------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHH
Confidence 23344556667778888888888776542 334456777788888888888888875432 3455
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 005161 404 VVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARAL 483 (711)
Q Consensus 404 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 483 (711)
.|.+|.+.|++++|.++-.+. .+.......|-.-..-+-+.|++.+|.+++-.+. .|+ ..|..|-+.|
T Consensus 797 ai~my~k~~kw~da~kla~e~---~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~ 864 (1636)
T KOG3616|consen 797 AIDMYGKAGKWEDAFKLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHG 864 (1636)
T ss_pred HHHHHhccccHHHHHHHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhC
Confidence 677888888888888877665 3334445556555566667777777776654322 122 2455677777
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 484 PIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQE 563 (711)
Q Consensus 484 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 563 (711)
..+..+++..+.....+ ..+-..+..-|...|+++.|...|-+... |.+-+..|...+-|++|.++-+.
T Consensus 865 ~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 865 LDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred cchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHhc
Confidence 77777766655432211 12233344556667777777777654433 44555556566666665544332
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCh
Q 005161 564 MQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDL 643 (711)
Q Consensus 564 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 643 (711)
.| ..+..- .+.-.+++.=--+.|.+++++.- ....-++.-+..+.++-|..+-+-..+.. .|.
T Consensus 934 ---eg-g~n~~k--~v~flwaksiggdaavkllnk~g---------ll~~~id~a~d~~afd~afdlari~~k~k-~~~- 996 (1636)
T KOG3616|consen 934 ---EG-GANAEK--HVAFLWAKSIGGDAAVKLLNKHG---------LLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE- 996 (1636)
T ss_pred ---cc-cccHHH--HHHHHHHHhhCcHHHHHHHHhhh---------hHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc-
Confidence 12 111111 11112222222233444443321 11222333344555555555544433321 122
Q ss_pred HhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 644 CSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 644 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
..-.+..-+...|++++|-+.|-+.++
T Consensus 997 -vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 997 -VHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred -chhHHhhhhhhccchhhhhHhhHHHhh
Confidence 222334444566667777666666554
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.50 E-value=2.1e-09 Score=106.30 Aligned_cols=98 Identities=16% Similarity=0.110 Sum_probs=60.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHh
Q 005161 226 NLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVK 305 (711)
Q Consensus 226 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (711)
++..+...|...|++++|....+..++..|.....+..-++.+-..|++++|...++.+...+.. |...-+..+..+.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555555555555555555444 66667777777788
Q ss_pred cCCHHHHHHHHHhhhhcCC
Q 005161 306 HGLIDDAMKVLGDKRWKDT 324 (711)
Q Consensus 306 ~g~~~~a~~~~~~~~~~~~ 324 (711)
+|+.++|.+++......+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCCHHHHHHHHHhhcCCCC
Confidence 8888888887777765554
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.50 E-value=2.2e-08 Score=98.36 Aligned_cols=443 Identities=11% Similarity=0.041 Sum_probs=218.7
Q ss_pred CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-cHhhH
Q 005161 149 GFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP-NASNL 227 (711)
Q Consensus 149 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 227 (711)
.+..+...|..|.-+...+|+++.+-+.|++....-+ -....|+.+...+...|.-..|..+.+........| +...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3556777888888788888888888888887765322 345567777777777888888888877665543223 33344
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHCCCC-----ChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHH
Q 005161 228 YTLINLHA-KYEDEEGAVNTLDDMLNMGCQ-----HSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVM 301 (711)
Q Consensus 228 ~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 301 (711)
......|. +.+..+++.....+++..... ....+..+.-+|...-... +..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a----------------~~~------- 453 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQA----------------NLK------- 453 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcC----------------CCh-------
Confidence 44444443 456666666666666552211 1111222222221110000 000
Q ss_pred HHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHH
Q 005161 302 AYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTE 381 (711)
Q Consensus 302 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (711)
-.+.....+++..+++..+.+.. |+...-.+.--|+..++++.|.+..++..+.+...+...|..+.-.+...+++.+
T Consensus 454 -seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 454 -SERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 00001123444445554444333 2222223333344455566666666666555445555566655555566666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005161 382 AEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKIL 461 (711)
Q Consensus 382 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 461 (711)
|+.+.+..... ...|......-+..-..-++.++++.....+..-..-.+.+. .. ++-.........+.
T Consensus 532 Al~vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q---~~-------~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 532 ALDVVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQ---QT-------LDEGKLLRLKAGLH 600 (799)
T ss_pred HHHHHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHh---hh-------hhhhhhhhhhcccc
Confidence 66666555443 111111111112222224455555544444322111011100 00 00000111111100
Q ss_pred h--cCCCCChhhHHHHHHHHHccC---CHHHHHHHHHHHHhCCCC--cc------HHHHHHHHHHHhccCcHHHHHHHHH
Q 005161 462 K--SGITWNQELYDCVINCCARAL---PIDELSRVFDEMLQHGFT--PN------IITLNVMLDIYGKAKLFKRVRKLFS 528 (711)
Q Consensus 462 ~--~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~ 528 (711)
- ....-...++..+.......+ ..+.. +...... |+ ...|......+.+.+..++|..-+.
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~ 674 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLL 674 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 0 000111112211111111000 00000 1100000 11 2233444555666677777776666
Q ss_pred HHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCC
Q 005161 529 MAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKN--VLRRMKETSCTF 606 (711)
Q Consensus 529 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~ 606 (711)
++.+..+..+..|......+...|++.+|.+.|......+ |.+.....++...+...|+..-|.. ++..+.+.+ +.
T Consensus 675 Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~ 752 (799)
T KOG4162|consen 675 EASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PL 752 (799)
T ss_pred HHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CC
Confidence 6666666666677777777777777777777777666553 3345566667777777776666655 777777653 44
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 607 DHYTYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 607 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
+...|-.+...+.+.|+.++|.+.|+...+
T Consensus 753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 566777777777777777777777777765
No 69
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.3e-07 Score=95.64 Aligned_cols=245 Identities=10% Similarity=0.070 Sum_probs=130.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCH
Q 005161 21 LIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLY 100 (711)
Q Consensus 21 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (711)
++..+++.|.++.+.-+.. +.|..|| |..+++.+.+ -+.+.+.+....+....+ +..-++.++..+...+..
T Consensus 487 Vi~cfAE~Gqf~KiilY~k---KvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~-~~~die~I~DlFme~N~i 558 (1666)
T KOG0985|consen 487 VIQCFAETGQFKKIILYAK---KVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEE-PLADIEQIVDLFMELNLI 558 (1666)
T ss_pred HHHHHHHhcchhHHHHHHH---HcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCC-CcccHHHHHHHHHHHHhh
Confidence 3444455555555443332 3455666 3445555555 578888888777777555 233456666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHH
Q 005161 101 EKAEEVIRLIREDKVVPNLEN-WLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLS 179 (711)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 179 (711)
+.+..++-++++.+ .|+..- -+.++..- -.+ |-++.+.+...+.- +..-+..+...|.+.|-+.+|++.|..
T Consensus 559 Qq~TSFLLdaLK~~-~Pd~g~LQTrLLE~N-L~~----aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytD 631 (1666)
T KOG0985|consen 559 QQCTSFLLDALKLN-SPDEGHLQTRLLEMN-LVH----APQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTD 631 (1666)
T ss_pred hhhHHHHHHHhcCC-ChhhhhHHHHHHHHH-hcc----chHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhccc
Confidence 77766666665533 233222 12222211 112 22233333332211 222256677778888888888877765
Q ss_pred HHhcCCCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC-
Q 005161 180 IKDVGLEPDETTYR----SMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMG- 254 (711)
Q Consensus 180 ~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 254 (711)
+.+- +.....-+ --+-.|.-.-.++.+.+.++.|...+++-|..+...+..-|...-..+...++|+......
T Consensus 632 l~DI--KR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eG 709 (1666)
T KOG0985|consen 632 LYDI--KRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEG 709 (1666)
T ss_pred HHHH--HHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchh
Confidence 5431 11111100 0122333445677788888888777666665555555444444444444445554433211
Q ss_pred -----------CCChhHHHHHHHHHHhcCCCCcHHHHHH
Q 005161 255 -----------CQHSSILGTLLQAYEKAGRTDNVPRILK 282 (711)
Q Consensus 255 -----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 282 (711)
.+.+++....+.+.++.|++.+.+++.+
T Consensus 710 L~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicr 748 (1666)
T KOG0985|consen 710 LYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICR 748 (1666)
T ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHh
Confidence 1233666777888888888877777665
No 70
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.47 E-value=7e-09 Score=104.41 Aligned_cols=133 Identities=11% Similarity=-0.041 Sum_probs=77.3
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECD-VQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMIT 92 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 92 (711)
+...+......|.+..++++|....-..-+.. ...-..-|..+.-.|.+.++...|...|+...+.+|.+...|..++.
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGe 604 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGE 604 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHH
Confidence 34556666677777777777766622222211 11122233444455667777777777777777777776777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 93 IYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMRE 147 (711)
Q Consensus 93 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 147 (711)
+|...|++..|+++|.++...++. +....-...-..+..|.+.+|+..++....
T Consensus 605 AY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 605 AYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 777777777777777766554422 111111222233456777777777666654
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=4.3e-09 Score=99.87 Aligned_cols=146 Identities=13% Similarity=0.060 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCCCChhhHHHHHHHHHccCC
Q 005161 413 SLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYY--------KILKSGITWNQELYDCVINCCARALP 484 (711)
Q Consensus 413 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~ 484 (711)
....|..++...-+.. ........-.++......|+++.|.+++. .+.+.+.. +.+...+...+.+.++
T Consensus 356 ~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKD 432 (652)
T ss_pred HHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccC
Confidence 3566666666653322 11123344455566667777777777776 33333333 3344555666666666
Q ss_pred HHHHHHHHHHHHhC--CCCccHH----HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHH
Q 005161 485 IDELSRVFDEMLQH--GFTPNII----TLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMS 558 (711)
Q Consensus 485 ~~~a~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 558 (711)
.+.|..+++..... ...+... ++..+...-.+.|+.++|..+++++.+.++++..+...++.+|++. +++.|.
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHH
Confidence 66666666665531 0011111 2222233334557777777777777777777777777777776654 345554
Q ss_pred HHHH
Q 005161 559 STVQ 562 (711)
Q Consensus 559 ~~~~ 562 (711)
.+-.
T Consensus 512 ~l~k 515 (652)
T KOG2376|consen 512 SLSK 515 (652)
T ss_pred HHhh
Confidence 4433
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=3.2e-11 Score=124.03 Aligned_cols=217 Identities=11% Similarity=-0.027 Sum_probs=155.3
Q ss_pred CCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005161 64 WNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL---------SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGK 134 (711)
Q Consensus 64 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 134 (711)
+++++|...|+++.+.+|....+|..+..+|... +++++|...+++....++. +..++..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 3567899999999999988877777777665432 3478888888888887655 66777777788888899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 135 LEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKE 214 (711)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 214 (711)
+++|...+++..+.+ +.+...+..+..++...|++++|...+++..+..+. +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999888875 345677788888888889999999999988876532 222333344456667888889888888
Q ss_pred HHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhh
Q 005161 215 LKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSL 285 (711)
Q Consensus 215 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 285 (711)
+.....+.++..+..+..++...|+.++|...+.++....+........+...|+..|+ .|...++.+.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll 500 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFL 500 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHH
Confidence 77653222344566667777788888888888888776655544555556666666553 5555454433
No 73
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.3e-08 Score=100.26 Aligned_cols=240 Identities=15% Similarity=0.143 Sum_probs=141.7
Q ss_pred CCHhhHHHHHH--HHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CC
Q 005161 48 PNVATFGMLMG--LYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK---------VV 116 (711)
Q Consensus 48 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~ 116 (711)
-|..|...+++ .|...|+.+.|.+-.+.+.. ...|..|...+++..+.+-|.-.+-.|.... ..
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-----~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-----DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-----hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 45566666654 46778999999888876654 4579999999999988887776665554311 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 005161 117 PNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMI 196 (711)
Q Consensus 117 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 196 (711)
|+ .+-..+.-.....|.+++|..++.+-.+. ..|=+.|...|.+++|.++-+.--.-.+ -.||..-.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 11 12222333344678899999998887763 3344566678999999988765443222 23454455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC-------------------CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 005161 197 EGWGRAGNYREAKWYYKELKHLG-------------------YKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQH 257 (711)
Q Consensus 197 ~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 257 (711)
.-+-..++.+.|+++|++..... -..|...|.-........|+.+.|+.++..+..
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 55556678888888887542110 011233333333444455555555555554443
Q ss_pred hhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 005161 258 SSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDK 319 (711)
Q Consensus 258 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 319 (711)
+..+++..|-.|+.++|-++-++.. |..+...|.+.|-..|++.+|...|.+.
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3344555555566666655554422 4445555666666666666666665543
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=2.4e-11 Score=105.86 Aligned_cols=235 Identities=15% Similarity=0.056 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 005161 435 YLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIY 514 (711)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 514 (711)
+--+.+..+|.+.|.+.+|...++..++.. |-+.||..+.+.|.+..++..|+.++.+-++. ++.+......+...+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 334678889999999999999999888874 45667888999999999999999999999876 455666667788888
Q ss_pred hccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 005161 515 GKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKN 594 (711)
Q Consensus 515 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 594 (711)
...++.++|.++++...+..+.+..+...+...|.-.++++-|+.+|+++.+.|+ .++..|+.+.-+|...++++-++.
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 9999999999999999999999999999999999999999999999999999984 578889889989999999999999
Q ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 595 VLRRMKETSCTFD--HYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 595 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
-|++.+..--.|+ ...|-.+.......||+.-|.+.|+-...+ .|+ ...+|.|...-.+.|++++|..+++...+
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 9999987533344 347888888888999999999999988875 344 78999999999999999999999999987
Q ss_pred cCCCCC
Q 005161 672 NGIEPD 677 (711)
Q Consensus 672 ~~~~p~ 677 (711)
+.|+
T Consensus 458 --~~P~ 461 (478)
T KOG1129|consen 458 --VMPD 461 (478)
T ss_pred --hCcc
Confidence 6675
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=5.2e-11 Score=122.45 Aligned_cols=234 Identities=14% Similarity=0.009 Sum_probs=176.4
Q ss_pred CchHhHHHHHHHHHh-----cCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHH---------ccCCHHHHHHHHHHHHH
Q 005161 13 LNFQLFNTLIYACNK-----RGCVELGAKWFHMMLECDVQPNVATFGMLMGLYK---------KSWNVEEAEFAFNQMRK 78 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~ 78 (711)
.+...|...+++... .++.++|..+|+++++.. +.+...|..+..++. ..+++++|...++++.+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 345666677776422 245679999999999875 334556655555443 23458999999999999
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005161 79 LGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYN 158 (711)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (711)
.+|.+..++..+..++...|++++|...|++..+.++. +...+..+...+...|++++|...+++..+..+. +...+.
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 99999999999999999999999999999999987755 5677888899999999999999999999998533 333334
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HhhHHHHHHHHHcC
Q 005161 159 TLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPN-ASNLYTLINLHAKY 237 (711)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 237 (711)
.++..+...|++++|...+++..+...+.+...+..+...+...|++++|...+.++... .|+ ....+.+...+...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhcc
Confidence 445556678999999999999876543224555777888888999999999999987654 333 33345555566777
Q ss_pred CCHHHHHHHHHHHHHC
Q 005161 238 EDEEGAVNTLDDMLNM 253 (711)
Q Consensus 238 ~~~~~a~~~~~~~~~~ 253 (711)
| +.+...++.+.+.
T Consensus 489 g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 489 S--ERALPTIREFLES 502 (553)
T ss_pred H--HHHHHHHHHHHHH
Confidence 7 4777777766653
No 76
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=9.1e-09 Score=101.28 Aligned_cols=210 Identities=16% Similarity=0.134 Sum_probs=120.1
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHc-C-------C-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLEC-D-------V-QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE 84 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~-~-------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 84 (711)
+..+|..+.+-|.+..+.+-|.-++..|... | . .|+ .+-..+...-...|.+++|+.++++..+.+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---- 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---- 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence 6778999999999998888887776655432 1 0 122 333334444457899999999998887754
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------
Q 005161 85 SAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGF-------------- 150 (711)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------- 150 (711)
.|-..|...|.+++|+++.+.-..-. =..||.....-+-..++.+.|++.|+......+
T Consensus 831 ----LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 831 ----LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred ----HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 45567778899999998887533222 224666666667777888888877764322100
Q ss_pred -----CCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHh
Q 005161 151 -----SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNAS 225 (711)
Q Consensus 151 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 225 (711)
..|...|......+-..|+.+.|+.+|....+ |-++++..|-+|+.++|-.+-++- -|..
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~A 968 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKA 968 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHH
Confidence 11333333333333344555555555544332 344444444555555554444332 1333
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHH
Q 005161 226 NLYTLINLHAKYEDEEGAVNTLDDM 250 (711)
Q Consensus 226 ~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (711)
....+.+.|...|++.+|...|-++
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3334445555555555555444443
No 77
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=3.3e-07 Score=92.79 Aligned_cols=86 Identities=16% Similarity=0.234 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005161 607 DHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMIT 686 (711)
Q Consensus 607 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 686 (711)
.+..|+.+..+-.+.|.+.+|++-|-+. -|+..|...+....+.|.|++-++++...++..-.|.. -..|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 3456777777777777777776655332 34666777777777777777777777776664444432 234555
Q ss_pred HHHhcchHHHHHHH
Q 005161 687 ALQRNDKFLEAIKW 700 (711)
Q Consensus 687 ~~~~~~~~~~A~~~ 700 (711)
+|.+.++..|-.++
T Consensus 1175 AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHHhchHHHHHHH
Confidence 66666665555444
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.8e-08 Score=94.50 Aligned_cols=474 Identities=13% Similarity=0.067 Sum_probs=243.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKL 135 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 135 (711)
=++.+...|++++|.+...++...+|.+..++..-+-++.+.++|++|+.+.+.-.... ..+...| .-+.+..+.+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~f-EKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFF-EKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhH-HHHHHHHHcccH
Confidence 34556678899999999999999988888888888889999999999986665432111 0011111 233444578999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCCHHHHHHHHHH
Q 005161 136 EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGW-GRAGNYREAKWYYKE 214 (711)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~ 214 (711)
++|...++-..+ .+..+...-...+.+.|++++|..+|+.+.+.+. +| +..-+.+- ...+ .+... +.
T Consensus 96 Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd---~d~~~r~nl~a~~---a~l~~-~~ 163 (652)
T KOG2376|consen 96 DEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DD---QDEERRANLLAVA---AALQV-QL 163 (652)
T ss_pred HHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ch---HHHHHHHHHHHHH---HhhhH-HH
Confidence 999888883222 2334555556677888999999999999877543 22 22222111 1111 11111 12
Q ss_pred HHhcCCCccHhhHHHHH---HHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCc
Q 005161 215 LKHLGYKPNASNLYTLI---NLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLF 291 (711)
Q Consensus 215 ~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 291 (711)
+......| ..+|..+. -.+...|++..|+++++...+.+... ..+-+...+-.+.-+
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-------------l~~~d~~eEeie~el------ 223 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREK-------------LEDEDTNEEEIEEEL------ 223 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-------------hcccccchhhHHHHH------
Confidence 22222233 23343333 34557788888888888775432110 000000000000000
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhh----HHHHHHHHHccCChhh-HHHHHHHHhhcCCCCcHHHH
Q 005161 292 NLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNL----YHLLICSCKDSGHLAN-AVKIYSHMHICDGKPNLHIM 366 (711)
Q Consensus 292 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~ 366 (711)
| .+...+.-++...|+.++|..++..+...++. |... -|.++..-....-++. ++..++..
T Consensus 224 ~-~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~------------ 289 (652)
T KOG2376|consen 224 N-PIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ------------ 289 (652)
T ss_pred H-HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHH------------
Confidence 0 11223444455566666666666655555433 1111 1111111100000000 00000000
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 005161 367 CTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQ 446 (711)
Q Consensus 367 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (711)
.....+..+..+..-... ....-+.++..| .+..+.+.++...+ .+..|.. .+..++..+.+
T Consensus 290 --------~~~l~~~~l~~Ls~~qk~----~i~~N~~lL~l~--tnk~~q~r~~~a~l---p~~~p~~-~~~~ll~~~t~ 351 (652)
T KOG2376|consen 290 --------VFKLAEFLLSKLSKKQKQ----AIYRNNALLALF--TNKMDQVRELSASL---PGMSPES-LFPILLQEATK 351 (652)
T ss_pred --------HHHhHHHHHHHHHHHHHH----HHHHHHHHHHHH--hhhHHHHHHHHHhC---CccCchH-HHHHHHHHHHH
Confidence 000011111111111110 111112233333 33444455544443 2223443 33444433322
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHH--------HHHhCCCCccHHHHHHHHHHHhc
Q 005161 447 --CGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFD--------EMLQHGFTPNIITLNVMLDIYGK 516 (711)
Q Consensus 447 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~ 516 (711)
......+.+++....+....-...+.-..+......|+++.|++++. .+.+.+..| .+...+...+.+
T Consensus 352 ~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~ 429 (652)
T KOG2376|consen 352 VREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYK 429 (652)
T ss_pred HHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHh
Confidence 22467778888777776555456677777788889999999999998 555544444 445566677777
Q ss_pred cCcHHHHHHHHHHHHHcCC---Cc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 005161 517 AKLFKRVRKLFSMAKKLGL---VD----VISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQM 589 (711)
Q Consensus 517 ~~~~~~a~~~~~~~~~~~~---~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 589 (711)
.++-+.|..++......-. +. ..++...+..-.+.|+.++|..+++++.+.. +++..+...++.+|++. +.
T Consensus 430 ~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~ 507 (652)
T KOG2376|consen 430 IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DP 507 (652)
T ss_pred ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CH
Confidence 7777777777765544211 11 1222333333445677777777777777653 56666666666666654 45
Q ss_pred HHHHHHHHHH
Q 005161 590 ENFKNVLRRM 599 (711)
Q Consensus 590 ~~A~~~~~~~ 599 (711)
+.|..+-..+
T Consensus 508 eka~~l~k~L 517 (652)
T KOG2376|consen 508 EKAESLSKKL 517 (652)
T ss_pred HHHHHHhhcC
Confidence 5555554443
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=4.9e-09 Score=103.69 Aligned_cols=299 Identities=12% Similarity=0.058 Sum_probs=149.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCC
Q 005161 196 IEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTD 275 (711)
Q Consensus 196 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 275 (711)
...+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.+|++...+..+..+........
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence 34456778888888888664443 33334445556667777788888888888887777776666666666553322110
Q ss_pred cHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCCh-hhHHHHHHHH
Q 005161 276 NVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHL-ANAVKIYSHM 354 (711)
Q Consensus 276 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 354 (711)
. ...+...++++++....+. ......+.-.+.....+ ..+...+..+
T Consensus 90 ~------------------------------~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~ 137 (517)
T PF12569_consen 90 D------------------------------EDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQ 137 (517)
T ss_pred c------------------------------ccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHH
Confidence 0 1122333333333222211 00111111111111111 1222333444
Q ss_pred hhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----C----------CCCCHHHH--HHHHHHHHHcCChHHHH
Q 005161 355 HICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSS----G----------IRLDLIAF--TVVVRMYVKAGSLKDAC 418 (711)
Q Consensus 355 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~~~--~~l~~~~~~~~~~~~A~ 418 (711)
+..|+|+ +|+.+-..|......+-..+++...... + -+|+...| ..+...|...|++++|+
T Consensus 138 l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al 214 (517)
T PF12569_consen 138 LRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKAL 214 (517)
T ss_pred HhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4444333 3333333343333333333333333221 0 12333223 33455555667777777
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 005161 419 AVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQH 498 (711)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 498 (711)
++++..+... +..+..|..-.+.+-+.|++.+|.+.++........ |..+-+..+..+.+.|+.++|..++....+.
T Consensus 215 ~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 215 EYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 7776665442 122445566666666677777777766666665432 5555555666666777777777776666554
Q ss_pred CCCccH--------HHHHHHHHHHhccCcHHHHHHHHHHHHHc
Q 005161 499 GFTPNI--------ITLNVMLDIYGKAKLFKRVRKLFSMAKKL 533 (711)
Q Consensus 499 ~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 533 (711)
+..|.. ........+|.+.|++..|++.|..+.+.
T Consensus 292 ~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 292 DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 432211 11123345666677777776666655443
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1.2e-10 Score=107.30 Aligned_cols=202 Identities=17% Similarity=0.120 Sum_probs=137.9
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
....+..+...+...|++++|...|+.+.+.+|....++..+...+...|++++|.+.+++.....+. +...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 34556666677777777777777777777777666667777777777777777777777777665433 44566666777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 005161 129 YSQQGKLEEAELVLVSMREAGF-SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYRE 207 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (711)
+...|++++|...+++...... +.....+..+...+...|++++|...|++..+... .+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777766421 22344566666777777778888777777766432 245566677777777788888
Q ss_pred HHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 005161 208 AKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNM 253 (711)
Q Consensus 208 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 253 (711)
|...+++.... ...+...+..+...+...|+.+.|..+.+.+...
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88777777665 2334555556666777777777777777666543
No 81
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=1.2e-10 Score=107.25 Aligned_cols=200 Identities=16% Similarity=0.108 Sum_probs=133.4
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...+..+...+...|++++|.+.++.+++.. +.+...+..+...+...|++++|.+.+++..+..+.....+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4556666677777777777777777776653 344566666667777777777777777777777666666777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHH
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVP-NLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAA 173 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 173 (711)
...|++++|.+.++........+ ....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777766542211 23445556666777777777777777777653 23455666677777777777777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 174 QRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 217 (711)
...+++..+.. ..+...+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777766542 23445555666666677777777777666544
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=5.2e-11 Score=103.80 Aligned_cols=232 Identities=12% Similarity=-0.016 Sum_probs=205.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 471 LYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQ 550 (711)
Q Consensus 471 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 550 (711)
--+.+.++|.+.|.+.+|...++..++. .|-+.||..|..+|.+..++..|+.++.+-.+..|-++....-+.+.+..
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3467888999999999999999998876 57778888899999999999999999999999988888888899999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 005161 551 NKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGV 630 (711)
Q Consensus 551 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 630 (711)
.++.++|.++|+...+.. +.+.....++...|.-.++.+-|..++++++..| ..++..|+.+.-+|...++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998874 6677788888888999999999999999999987 45888999999999999999999999
Q ss_pred HHHHHHCCCCCC--hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 631 LTELKECGLRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD-KITYTNMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 631 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
|++....--.|+ ..+|..+.......|++.-|.+.|+-... -.|+ ...++.|.-.-.+.|+.++|..+++..+..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999988555566 57899999999999999999999999876 4455 478888888889999999999999988765
Q ss_pred C
Q 005161 708 G 708 (711)
Q Consensus 708 g 708 (711)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 4
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.4e-09 Score=96.83 Aligned_cols=293 Identities=12% Similarity=0.025 Sum_probs=223.1
Q ss_pred hcCChHHHHHHHHHHhH-cCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 005161 27 KRGCVELGAKWFHMMLE-CDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEE 105 (711)
Q Consensus 27 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 105 (711)
..++...|...+-.+.. +-++-|......+..++...|+.++|...|++..-.+|....+.......+.+.|+++....
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 34444444443333322 23577888888999999999999999999999999999877666666777788899998888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCC
Q 005161 106 VIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGL 185 (711)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 185 (711)
+...+....- .+...|-.-+..+...++++.|+.+-+..++.. +.+...+-.-...+...|+.++|.-.|.......+
T Consensus 288 L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 288 LMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred HHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 8777655331 234445455555667889999999999988875 34566665556677888999999999998876432
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHH-HHH-HcCCCHHHHHHHHHHHHHCCCCChhHHHH
Q 005161 186 EPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLI-NLH-AKYEDEEGAVNTLDDMLNMGCQHSSILGT 263 (711)
Q Consensus 186 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 263 (711)
-+...|..|+..|...|.+.+|.-+-+..... ...+..++..+. ..+ ....--++|+.+++..++..|........
T Consensus 366 -~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 366 -YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL 443 (564)
T ss_pred -hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH
Confidence 57889999999999999999998877766543 233444444442 222 23334588999999999998888899999
Q ss_pred HHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCC
Q 005161 264 LLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTV 325 (711)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 325 (711)
++..+...|+.+++.++++..+.. .||....+.|.+.+...+.+++|.+.|......++.
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 999999999999999999987764 468888999999999999999999998887766654
No 84
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.38 E-value=1.2e-07 Score=92.56 Aligned_cols=170 Identities=18% Similarity=0.188 Sum_probs=98.8
Q ss_pred HHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCC
Q 005161 264 LLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGH 343 (711)
Q Consensus 264 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 343 (711)
.+.+-....++..|..+++.+.+++.. ...|..+...|...|+++.|.++|.+.. .++..|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 444555566677777777666655432 3456666777777777777777775432 35556677777777
Q ss_pred hhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005161 344 LANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLET 423 (711)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 423 (711)
++.|.++-++... .......|..-..-+...|++.+|.++|-.+.. |+. .|.+|-+.|..++.+++..+
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHH
Confidence 7777776666542 233444555555556667777777766644432 332 35566677777766666654
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005161 424 MEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYK 459 (711)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 459 (711)
-.. ..-..|...+..-+-..|+...|...|-+
T Consensus 876 ~h~----d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 876 HHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hCh----hhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 311 11223444555555666666666655543
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=1e-09 Score=91.39 Aligned_cols=204 Identities=14% Similarity=0.027 Sum_probs=157.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQ 131 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (711)
+...|.-.|.+.|+...|.+-++++++++|....+|..+...|.+.|..+.|.+.|++.+...+. +..+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 44456667788888888888888888888888888888888888888888888888888877655 66777888888888
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 005161 132 QGKLEEAELVLVSMREAGF-SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKW 210 (711)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 210 (711)
.|++++|...|++...... ..-..+|..+.-+..+.|+.+.|.+.|++..+... -...+...+.......|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHH
Confidence 8888888888888887532 22334666677677788888888888888877543 233445667777888888888888
Q ss_pred HHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh
Q 005161 211 YYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS 258 (711)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 258 (711)
.++.....+. ++...+-..|+.-...||.+.+.+.=.++.+..|.+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 8888877765 7777777778888888888888777777777666554
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=7.3e-09 Score=89.48 Aligned_cols=205 Identities=17% Similarity=0.133 Sum_probs=132.2
Q ss_pred cCCCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHH
Q 005161 9 LGAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYS 88 (711)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 88 (711)
+|...-..-+.+++..+.+..++..|.++...-.++. +.+....+.|..+|....++..|-.-++.+....|.-..-..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 3444445556677777777778888888877766653 336666666777777778888888888877776665444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 005161 89 AMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN--AYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK 166 (711)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (711)
.-.+.+-+.+.+..|+.+...|.+. ++...-..-+. ...+.+++..+..++++.... .+..+.+.......+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeec
Confidence 5566677778888888887766553 12211111111 222467777777777766643 244555556666677
Q ss_pred cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005161 167 VSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYK 221 (711)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 221 (711)
.|+++.|.+-|+...+.+--.....||..+..| +.|++..|++...+..++|++
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 788888888887777654444556666555444 567788888888877777654
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=4.7e-09 Score=90.63 Aligned_cols=293 Identities=13% Similarity=0.029 Sum_probs=148.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCC
Q 005161 194 SMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGR 273 (711)
Q Consensus 194 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 273 (711)
+.+..+++..+++.|.+++..-.+... -+...+..+..+|-...++..|...++++-...|.........++.+.+.+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 334444445555555555554444321 1333344444455555555555556655555555554444445556666666
Q ss_pred CCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHH
Q 005161 274 TDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSH 353 (711)
Q Consensus 274 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 353 (711)
+.+|+.+...+.+.. ..-..+...-.......+++..+..+++.....| +..+.+.......+.|+++.|.+-|..
T Consensus 94 ~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 94 YADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred cHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHH
Confidence 666666666555431 1011111111112223455555555555544222 222333344444566777777777776
Q ss_pred HhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----------------------------HHHHHHH
Q 005161 354 MHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDL----------------------------IAFTVVV 405 (711)
Q Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------~~~~~l~ 405 (711)
..+.+.-.....|+..+.. .+.++++.|++...+++++|++..+ ..+|.-.
T Consensus 170 AlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 6655434445556655533 3556677777777777666543111 1122222
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCH
Q 005161 406 RMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPI 485 (711)
Q Consensus 406 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 485 (711)
..+.+.++++.|.+.+.+|..+.....|+.|...+.-.= ..+++....+-+.-++..+. ....||..++-.||++.-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 334566777777777777755444445555554433211 12334444444444444433 4455666666677777666
Q ss_pred HHHHHHHHH
Q 005161 486 DELSRVFDE 494 (711)
Q Consensus 486 ~~a~~~~~~ 494 (711)
+.|-.++.+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 666666543
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=1.8e-09 Score=90.00 Aligned_cols=205 Identities=15% Similarity=0.034 Sum_probs=174.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR 96 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (711)
+...+.-.|.+.|++..|..-++++++.+ +.+..+|..+...|-+.|+.+.|.+.|++.....|.+..+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 44455568999999999999999999986 66788899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHH
Q 005161 97 LSLYEKAEEVIRLIREDKVVP-NLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQR 175 (711)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 175 (711)
+|++++|...|+........+ ...+|..+.-+..+.|+++.|...|++.++... ..+...-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999988765333 346788888888899999999999999998753 355667788888999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhh
Q 005161 176 LFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASN 226 (711)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 226 (711)
.++.....+. ++..+.-..|+.--+.|+.+.+-++=.++.+. .|...-
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e 242 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEE 242 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHH
Confidence 9999988776 88888888888888899999888877777664 444433
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.3e-08 Score=92.42 Aligned_cols=396 Identities=15% Similarity=0.068 Sum_probs=214.5
Q ss_pred HHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHH
Q 005161 23 YACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEK 102 (711)
Q Consensus 23 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (711)
.+.+..|+++.|+.+|.+.+... ++|...|..-..+|+..|++++|++--.+-.+.+|.....|+.+..++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 46778999999999999999987 56999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHcC---CCCCHHHHHHHHHHhhcc---------
Q 005161 103 AEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEA---ELVLVSMREAG---FSPNIVAYNTLMTGYGKV--------- 167 (711)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~--------- 167 (711)
|+..|.+=++..+. |...+..+..++......... -.++..+.... .......|..++..+-+.
T Consensus 89 A~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 99999998876644 555666666665211000000 01111111100 000111222232222111
Q ss_pred -CChHHHHHHHHHHH-----hcC-------CCC---------C-------------hhhHHHHHHHHHhcCCHHHHHHHH
Q 005161 168 -SNMEAAQRLFLSIK-----DVG-------LEP---------D-------------ETTYRSMIEGWGRAGNYREAKWYY 212 (711)
Q Consensus 168 -~~~~~a~~~~~~~~-----~~~-------~~~---------~-------------~~~~~~li~~~~~~g~~~~A~~~~ 212 (711)
..+..+...+.... ..+ ..| . ..-...+.++..+..+++.|.+-|
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 11111211111100 000 011 0 011233444555555666666666
Q ss_pred HHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcc
Q 005161 213 KELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFN 292 (711)
Q Consensus 213 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 292 (711)
....+.. -+..-++....++...|.+.......+...+.|......++.+...+
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~------------------------ 301 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKAL------------------------ 301 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHH------------------------
Confidence 6665543 23333444455566666666555555555554443332222111111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcH-HHHHHHHH
Q 005161 293 LTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNL-HIMCTMID 371 (711)
Q Consensus 293 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 371 (711)
..+...|.+.++++.++..|.+.......|+.. .+....+++....+...-.+ |.. .-...-..
T Consensus 302 ----~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGn 366 (539)
T KOG0548|consen 302 ----ARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGN 366 (539)
T ss_pred ----HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHH
Confidence 112234444455555555555544333332211 11222333333333322211 111 11111234
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHH
Q 005161 372 TYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLD 451 (711)
Q Consensus 372 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 451 (711)
.+.+.|++..|...|.+++... +-|...|....-+|.+.|.+..|+.-.+...+.. ++....|..-..++....+++
T Consensus 367 e~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 367 EAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777776666664 3356666666666667776666666655554331 233344555555555666677
Q ss_pred HHHHHHHHHHhcC
Q 005161 452 KLSYLYYKILKSG 464 (711)
Q Consensus 452 ~a~~~~~~~~~~~ 464 (711)
.|.+.|.+.++..
T Consensus 444 kAleay~eale~d 456 (539)
T KOG0548|consen 444 KALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHhcC
Confidence 7777777666654
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.2e-08 Score=96.15 Aligned_cols=103 Identities=19% Similarity=0.186 Sum_probs=64.3
Q ss_pred HhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HhhHHHHHHHHHcCCCHH
Q 005161 163 GYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPN-ASNLYTLINLHAKYEDEE 241 (711)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 241 (711)
+.+..|+++.|...|.+.....+ ++-+.|..-..+|...|++++|++--.+.++. .|+ +.-|.....++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 34456777777777777666544 35666666677777777777776655555543 444 335666666666666777
Q ss_pred HHHHHHHHHHHCCCCChhHHHHHHHHH
Q 005161 242 GAVNTLDDMLNMGCQHSSILGTLLQAY 268 (711)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~~l~~~~ 268 (711)
+|+..|.+-++..+.+......+..++
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 777666666666666555555555554
No 91
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=3.8e-09 Score=103.00 Aligned_cols=235 Identities=15% Similarity=0.157 Sum_probs=146.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC-CccHH-HHHHHHHHHhccCcHHHHHHHHHHHHHcC-----CC--
Q 005161 471 LYDCVINCCARALPIDELSRVFDEMLQH-----GF-TPNII-TLNVMLDIYGKAKLFKRVRKLFSMAKKLG-----LV-- 536 (711)
Q Consensus 471 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-- 536 (711)
+...+...|...|+++.|..+++..++. |. .|... ..+.+...|...+++.+|..+|+.+.... ..
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555666666666666666655532 10 12222 22335556667777777777776554322 11
Q ss_pred -chhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC
Q 005161 537 -DVISYNTIIAAYGQNKNLESMSSTVQEMQFD-----G-FSVS-LEAYNSMLDAYGKEGQMENFKNVLRRMKET---SCT 605 (711)
Q Consensus 537 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 605 (711)
-..+++.|..+|.+.|++++|...++...+. | ..|. ...++.+...|...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2345666666777777777766665554332 1 1112 223455666777888888888888776541 122
Q ss_pred CC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-----C-CCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHH---
Q 005161 606 FD----HYTYNIMIDIYGEQGWINEVVGVLTELKEC-----G-LRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRE--- 671 (711)
Q Consensus 606 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 671 (711)
++ ..+++.|...|...|++++|.++++++++. | ..+. ...++.+...|.+.+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 237788888888888888888888887752 1 1222 45678888888888888888888877542
Q ss_pred -cC-CCCCc-chHHHHHHHHHhcchHHHHHHHHHHHH
Q 005161 672 -NG-IEPDK-ITYTNMITALQRNDKFLEAIKWSLWMK 705 (711)
Q Consensus 672 -~~-~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~ 705 (711)
.| -.|+. .+|..|...|.+.|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 12333 678888888888888888888877664
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.26 E-value=7.9e-09 Score=97.01 Aligned_cols=220 Identities=14% Similarity=-0.002 Sum_probs=136.6
Q ss_pred cCChHHHHHHHHHHhHcCC-CCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHH
Q 005161 28 RGCVELGAKWFHMMLECDV-QPN--VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAE 104 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 104 (711)
.+..+.++..+.+++.... .|+ ...|..+..+|...|+.++|...|.+..+.+|....+|+.+...+...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3455667777777775431 122 3456666777778888888888888888888877888888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcC
Q 005161 105 EVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVG 184 (711)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (711)
..|+...+.++. +..++..+...+...|++++|.+.++...+.. |+..........+...++.++|...|++.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888888776544 45667777777778888888888888887764 322211122222344567888888886654322
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC--c-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005161 185 LEPDETTYRSMIEGWGRAGNYREAKWYYKELKHL---GYK--P-NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGC 255 (711)
Q Consensus 185 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (711)
.|+...+ .+. ....|+...+ ..+..+.+. .+. | ....|..+...+...|+.++|...|+++++..+
T Consensus 196 -~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 -DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2222222 222 2234554443 233443321 111 1 123566666677777777777777777776554
No 93
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=6.8e-09 Score=101.29 Aligned_cols=241 Identities=20% Similarity=0.200 Sum_probs=127.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-C
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKL--------GLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED-----KV-V 116 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~ 116 (711)
.+...+...|...|+++.|..++++..+. .+.-....+.+...|...+++.+|..+|++++.. |. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455666777777777777777776654 1212344555667777777777777777766541 11 1
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHhhccCChHHHHHHHHHHHhc---CC
Q 005161 117 P-NLENWLVMLNAYSQQGKLEEAELVLVSMREA-----GF-SPNI-VAYNTLMTGYGKVSNMEAAQRLFLSIKDV---GL 185 (711)
Q Consensus 117 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 185 (711)
| -..+++.+..+|.+.|++++|...+++..+. +. .|.+ ..++.+...+...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 1234566666677777777776666665532 10 1111 22444555566666666666666544321 11
Q ss_pred CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C--Cc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 005161 186 EPD----ETTYRSMIEGWGRAGNYREAKWYYKELKHLG----Y--KP-NASNLYTLINLHAKYEDEEGAVNTLDDMLNMG 254 (711)
Q Consensus 186 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 254 (711)
.++ ..+++.|...|...|++++|.++|++....- - .+ ....++.+...|.+.+..++|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i- 438 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI- 438 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH-
Confidence 111 2345666666666666666666666554321 0 11 1223344444444444444444444443321
Q ss_pred CCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 005161 255 CQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDK 319 (711)
Q Consensus 255 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 319 (711)
.+.....++. -..+|..|+..|.+.|++++|.++.+.+
T Consensus 439 --------------------------~~~~g~~~~~-~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 439 --------------------------MKLCGPDHPD-VTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred --------------------------HHHhCCCCCc-hHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1000001111 2356667777777777777777766554
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=1.7e-08 Score=94.85 Aligned_cols=197 Identities=16% Similarity=0.050 Sum_probs=148.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
..|...-..+.+.|+.++|...|+.+++.. +.+...|..+...+...|++++|...|+++.+.+|....+|..++.++.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 446666678889999999999999999975 5678899999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHH
Q 005161 96 RLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQR 175 (711)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 175 (711)
..|++++|++.|+...+.++. +. ............++.++|...+.+..... +++...+ .+... ..|+...+ +
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~~--~lg~~~~~-~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVEF--YLGKISEE-T 216 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHHH--HccCCCHH-H
Confidence 999999999999999886643 22 12222223445688999999997765432 3333222 23332 34555443 3
Q ss_pred HHHHHHhc---CC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005161 176 LFLSIKDV---GL---EPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGY 220 (711)
Q Consensus 176 ~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 220 (711)
.++.+.+. .+ .....+|..+...+.+.|++++|...|++..+.++
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 44444321 11 12345788999999999999999999999998753
No 95
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=4.3e-11 Score=77.19 Aligned_cols=50 Identities=34% Similarity=0.549 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhc
Q 005161 606 FDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGI 655 (711)
Q Consensus 606 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 655 (711)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 96
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=4.8e-11 Score=76.96 Aligned_cols=49 Identities=39% Similarity=0.650 Sum_probs=27.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHH
Q 005161 187 PDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHA 235 (711)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (711)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=4.8e-07 Score=88.95 Aligned_cols=201 Identities=10% Similarity=-0.018 Sum_probs=109.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh--hhHHHHHHH
Q 005161 506 TLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGF-SVSL--EAYNSMLDA 582 (711)
Q Consensus 506 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~ 582 (711)
....+...+...|++++|...++...+..+.+...+..+...+...|++++|...+++...... .++. ..|..+...
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 3344455666777777777777777777776666777777777777777777777777665421 1221 234456666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHhhcCCHHHHHHHHHHHHH---CCCCCC--hHhHHHHHHHH
Q 005161 583 YGKEGQMENFKNVLRRMKETSC-TFDHYTY-N--IMIDIYGEQGWINEVVGVLTELKE---CGLRPD--LCSYNTLIKAY 653 (711)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~--~~~~~~l~~~~ 653 (711)
+...|++++|..++++...... .+..... + .++..+...|....+.+. +.+.. ...... .........++
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 7777777777777777653211 1111111 1 222233333432222222 11111 000101 11122456667
Q ss_pred hccCChHHHHHHHHHHHHcCCC-------C-CcchHHHHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 654 GIAGMVEDAVGLVKEMRENGIE-------P-DKITYTNMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 654 ~~~g~~~~A~~~~~~~~~~~~~-------p-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
...|+.+.|...++.+...... . ..........++...|++++|.+.+.+....
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777888888887777642111 1 1222333444556778888888877766543
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=2.2e-08 Score=95.22 Aligned_cols=220 Identities=16% Similarity=0.104 Sum_probs=169.9
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005161 60 YKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAE 139 (711)
Q Consensus 60 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 139 (711)
+.+.|++.+|.-.|+.....+|....+|-.|......+++-..|+..+++.++.++. |..+...|.-.|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 467899999999999999999999999999999999999999999999999998776 8888999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH---------HHhhccCChHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHH
Q 005161 140 LVLVSMREAGFSPNIVAYNTLM---------TGYGKVSNMEAAQRLFLSIKDV-GLEPDETTYRSMIEGWGRAGNYREAK 209 (711)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 209 (711)
..+..-++..++ - .|.... ..+..........++|-++... +..+|...+..|.-.|--.|+|++|.
T Consensus 374 ~~L~~Wi~~~p~-y--~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-Y--VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHhCcc-c--hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 999988765321 0 010000 1222223345556666655443 33467777888888888888888888
Q ss_pred HHHHHHHhcCCCc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhh
Q 005161 210 WYYKELKHLGYKP-NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSL 285 (711)
Q Consensus 210 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 285 (711)
+.|+.++.. +| |...|+.|...++...+.++|+..|.++++..|.-..+...++-.+...|.+++|.+.|-.++
T Consensus 451 Dcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 888888774 44 456788888888888888888888888888877777777777777888888777777665544
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.08 E-value=8.8e-07 Score=87.14 Aligned_cols=55 Identities=9% Similarity=0.149 Sum_probs=23.6
Q ss_pred HHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 162 TGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 217 (711)
..+...|++++|...+++..+..+ .+...+..+...+...|++++|...+++...
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 334444444444444444444321 2233334444444444444444444444433
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=1.8e-06 Score=76.66 Aligned_cols=298 Identities=12% Similarity=0.064 Sum_probs=159.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCC
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLE-NWLVMLNAYSQQGK 134 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~ 134 (711)
+...+...|.+..|+.-|-.+.+.+|.+-.++..-...|...|+..-|+.-+.++++.. |+.. +.......+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHhchhhhhccc
Confidence 34444444555555555555555555444444444455555555555555555544422 3321 12223334445555
Q ss_pred HHHHHHHHHHHHHcCCCCC------------H--HHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 005161 135 LEEAELVLVSMREAGFSPN------------I--VAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWG 200 (711)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~------------~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 200 (711)
++.|..-|+.+++.....+ . ......+..+...|+...|......+.+..+ -|+..|..-..+|.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHH
Confidence 5555555555554321100 0 0112233444556666666666666665432 45555666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh---hHHHHH---------HHHH
Q 005161 201 RAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS---SILGTL---------LQAY 268 (711)
Q Consensus 201 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l---------~~~~ 268 (711)
..|.+..|..-++...+.. ..++.++..+...+...|+.+.++....+.++.+|+.. +.|..+ +...
T Consensus 201 ~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred hcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655554442 23444555555666666666666666666666666544 112111 2223
Q ss_pred HhcCCCCcHHHHHHHhhhccCCc---chhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChh
Q 005161 269 EKAGRTDNVPRILKGSLYQHVLF---NLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLA 345 (711)
Q Consensus 269 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (711)
...+++.++.+--+..+...|.. ....+..+...+...+++.+|+..-.++..-.+. |..++..-..+|.-...++
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYD 358 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHH
Confidence 44566666766666666665542 2233445556666677777777776666544332 3455666666777777777
Q ss_pred hHHHHHHHHhhcC
Q 005161 346 NAVKIYSHMHICD 358 (711)
Q Consensus 346 ~a~~~~~~~~~~~ 358 (711)
.|+.-|+...+.+
T Consensus 359 ~AI~dye~A~e~n 371 (504)
T KOG0624|consen 359 DAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHhcC
Confidence 7777777776653
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.06 E-value=2e-06 Score=76.46 Aligned_cols=313 Identities=12% Similarity=0.050 Sum_probs=222.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHh
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYN-TLMTGY 164 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~ 164 (711)
-..-+...+...|++..|+.-|-...+.++. +-.++-.....|...|+-..|+.-+.++++. .||-..-. .-...+
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 3455778888899999999999988886544 4445556677888899999999999999986 56643322 123467
Q ss_pred hccCChHHHHHHHHHHHhcCCCCC------------hhhH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHH
Q 005161 165 GKVSNMEAAQRLFLSIKDVGLEPD------------ETTY--RSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTL 230 (711)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 230 (711)
.+.|.+++|..-|+.+.+..+... ...| ...+..+.-.|+...|......+.+.. .-|...+..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 899999999999999988653111 1112 234556667899999999999999863 3367777778
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHH
Q 005161 231 INLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLID 310 (711)
Q Consensus 231 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 310 (711)
..+|...|++..|+.-++.+.+...+++..+..+...+...|+.+.++...++.+..+|. .-.+|.. | ..+.
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd-HK~Cf~~----Y---Kklk 267 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD-HKLCFPF----Y---KKLK 267 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc-hhhHHHH----H---HHHH
Confidence 889999999999999999999999999999999999999999999999999988876554 1122211 1 1222
Q ss_pred HHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHH---HHHHHHHHHHccCCHHHHHHHHH
Q 005161 311 DAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLH---IMCTMIDTYSVMGMFTEAEKLYL 387 (711)
Q Consensus 311 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~ 387 (711)
+..+.++.|. .....+++.++++-.+..++........ .+..+-.++...+++.+|++...
T Consensus 268 Kv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 268 KVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred HHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 3333333322 1234456666666666666554321222 23344455667788888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 005161 388 NLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQ 427 (711)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 427 (711)
++.+.. +.|..++.--..+|.-...++.|+.-|+...+.
T Consensus 332 evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 332 EVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 888752 224777777888888888888898888887543
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=3.3e-08 Score=94.00 Aligned_cols=222 Identities=16% Similarity=0.112 Sum_probs=179.8
Q ss_pred HHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHH
Q 005161 23 YACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEK 102 (711)
Q Consensus 23 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (711)
..+.++|+..+|.-+|+..++.. |-+...|..|...-+..++-..|+..+.++.+.+|.+..+.-.|...|...|.-.+
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 45778999999999999999987 67889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhccCCh
Q 005161 103 AEEVIRLIREDKVVPNLENWLVML-----------NAYSQQGKLEEAELVLVSMREA-GFSPNIVAYNTLMTGYGKVSNM 170 (711)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 170 (711)
|++.+...+...++ |..+. ..+.....+....++|-++... +..+|+.+...|.-.|.-.|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999987654322 10000 1111222334455556555543 4347888889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc-HhhHHHHHHHHHcCCCHHHHHHHHHH
Q 005161 171 EAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPN-ASNLYTLINLHAKYEDEEGAVNTLDD 249 (711)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 249 (711)
++|...|+......+ -|..+||.|...+....+.++|...|++.++. +|+ +.+...|.-.|...|.+.+|...|-.
T Consensus 447 draiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999999988653 57888999999999999999999999999985 565 44556677788999999999998887
Q ss_pred HHHC
Q 005161 250 MLNM 253 (711)
Q Consensus 250 ~~~~ 253 (711)
++..
T Consensus 524 AL~m 527 (579)
T KOG1125|consen 524 ALSM 527 (579)
T ss_pred HHHh
Confidence 7754
No 103
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.05 E-value=3.5e-05 Score=78.00 Aligned_cols=162 Identities=10% Similarity=0.052 Sum_probs=99.2
Q ss_pred HHHHHHHHHhccCcHH---HHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 005161 506 TLNVMLDIYGKAKLFK---RVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDA 582 (711)
Q Consensus 506 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 582 (711)
+.+.|++.|-+.++.. +|+-+++......+.+..+--.+++.|.-.|-+..|.+.|+.+.-..+..|...|. +...
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 3466777888777744 56666666677777788888889999999999999999999887766666655443 3444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHH---HHHHHHHCCCCCChHhHHHHHHHHhccCC
Q 005161 583 YGKEGQMENFKNVLRRMKETSCTFD-HYTYNIMIDIYGEQGWINEVVG---VLTELKECGLRPDLCSYNTLIKAYGIAGM 658 (711)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 658 (711)
+...|++..+...++...+- +..+ ..+-..+..+| +.|.+.+..+ +=+++.......-..+-+..+...+..++
T Consensus 517 ~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 56678888888887776642 1111 11222222333 3455444333 33333321111112344666666777777
Q ss_pred hHHHHHHHHHHH
Q 005161 659 VEDAVGLVKEMR 670 (711)
Q Consensus 659 ~~~A~~~~~~~~ 670 (711)
.+.-...+..|.
T Consensus 595 ~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 595 GTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHhccc
Confidence 777777777665
No 104
>PLN02789 farnesyltranstransferase
Probab=98.96 E-value=1.3e-06 Score=81.70 Aligned_cols=215 Identities=11% Similarity=0.000 Sum_probs=142.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSW-NVEEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
++..+-..+...+..+.|+.+..++++.. +-+..+|.....++...| ++++++..++.+.+.+|.+..+|+....++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 33344445556778888888888888765 445567776666666666 5788888888888888888778887766666
Q ss_pred hcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc---CCh
Q 005161 96 RLSLY--EKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV---SNM 170 (711)
Q Consensus 96 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 170 (711)
+.|.. ++++.+++.+.+.+++ |..+|....-.+.+.|+++++++.++++++.++ .+..+|+....++.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccc
Confidence 66653 6678888888877766 777888877778788888888888888888764 3666777666555443 222
Q ss_pred ----HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHc
Q 005161 171 ----EAAQRLFLSIKDVGLEPDETTYRSMIEGWGRA----GNYREAKWYYKELKHLGYKPNASNLYTLINLHAK 236 (711)
Q Consensus 171 ----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (711)
+.......++....+ -+...|+.+...+... +...+|.+.+.+....+ ..+...+..++..++.
T Consensus 196 ~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 345555555555432 4556676666666552 33455666666655532 1244555566666654
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=6.2e-08 Score=89.32 Aligned_cols=82 Identities=12% Similarity=0.149 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCH-HHHHHHHHh
Q 005161 240 EEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLI-DDAMKVLGD 318 (711)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 318 (711)
+..|..+|+++....+....+.+.++.++...|++++|.+++++++..++. +..+...++......|+. +.+.+.+..
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 444444444444433333344444444444445555555544444444433 444444455555555554 444455555
Q ss_pred hhhc
Q 005161 319 KRWK 322 (711)
Q Consensus 319 ~~~~ 322 (711)
+...
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 5443
No 106
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=1.3e-06 Score=81.68 Aligned_cols=213 Identities=12% Similarity=0.029 Sum_probs=147.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005161 54 GMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS-LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQ 132 (711)
Q Consensus 54 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (711)
..+-.++...+..++|+.+...+.+.+|....+|+....++...| .+++++..++.+...+++ +..+|+...-.+.+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 344445556778899999999999999988889988888888888 579999999999887766 666777666556666
Q ss_pred CCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---CCH--
Q 005161 133 GKL--EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRA---GNY-- 205 (711)
Q Consensus 133 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~-- 205 (711)
|+. +++...++.+++.. +.+..+|+...-++.+.|+++++++.++++.+.++ .+..+|+.....+.+. |.+
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccc
Confidence 653 67788888888875 34778888888888888899999999999888764 4566676655444433 222
Q ss_pred --HHHHHHHHHHHhcCCCccHhhHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHh
Q 005161 206 --REAKWYYKELKHLGYKPNASNLYTLINLHAKY----EDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEK 270 (711)
Q Consensus 206 --~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (711)
++++++..+++.... -|...|+.+...+... +...+|...+.++....+.+...+..++..|+.
T Consensus 198 ~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 355666656665432 2455666666666552 233456666666666555555555666666653
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=1.3e-05 Score=89.76 Aligned_cols=375 Identities=10% Similarity=-0.014 Sum_probs=191.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 005161 295 SCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYS 374 (711)
Q Consensus 295 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 374 (711)
.+......+...|++.+|............. ..............|+++.+...+..+.......+..........+.
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~--~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQLL--RDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHH--HHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 3444556666777777776655444222100 01111222334445666666666655422111112222233334445
Q ss_pred ccCCHHHHHHHHHHHHhCCCC------CCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc---HHHHHHHHHH
Q 005161 375 VMGMFTEAEKLYLNLKSSGIR------LDL--IAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD---AYLYCDMLRI 443 (711)
Q Consensus 375 ~~~~~~~a~~~~~~~~~~~~~------~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~ 443 (711)
..|+++++...+......--. +.. .....+...+...|++++|...++........... ....+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 667777777777766543110 111 11122233445677788887777776442111110 1233445555
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC---C--ChhhHHHHHHHHHccCCHHHHHHHHHHHHh----CCCC--c-cHHHHHHHH
Q 005161 444 YQQCGMLDKLSYLYYKILKSGIT---W--NQELYDCVINCCARALPIDELSRVFDEMLQ----HGFT--P-NIITLNVML 511 (711)
Q Consensus 444 ~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~ 511 (711)
+...|+++.|...+.+....... + ...++..+...+...|++++|...+++... .+.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 66777787777777776543111 1 112334445566677777777777776653 1211 1 122233344
Q ss_pred HHHhccCcHHHHHHHHHHHHHcCC---C--chhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhH-----HHHH
Q 005161 512 DIYGKAKLFKRVRKLFSMAKKLGL---V--DVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSV-SLEAY-----NSML 580 (711)
Q Consensus 512 ~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~ 580 (711)
..+...|++++|...+........ + ....+..+...+...|+++.|...+.......... ....+ ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 455566777777777766544211 1 23334445556667777777777777664421000 00001 0112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC-hHhHHHHHHH
Q 005161 581 DAYGKEGQMENFKNVLRRMKETSCTFDH---YTYNIMIDIYGEQGWINEVVGVLTELKEC----GLRPD-LCSYNTLIKA 652 (711)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~ 652 (711)
..+...|+.+.|...+............ ..+..+..++...|+.++|...+++.... |..++ ..++..+..+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 3334467777777776665432111111 11234555666777777777777776642 22222 3455566677
Q ss_pred HhccCChHHHHHHHHHHHH
Q 005161 653 YGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 653 ~~~~g~~~~A~~~~~~~~~ 671 (711)
+...|+.++|...+.++.+
T Consensus 741 ~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777776
No 108
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.91 E-value=0.00012 Score=74.36 Aligned_cols=226 Identities=11% Similarity=0.079 Sum_probs=152.6
Q ss_pred HhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHH
Q 005161 26 NKRGCVELGAKWFHMMLECDVQPNVATFGMLMGL--YKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKA 103 (711)
Q Consensus 26 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 103 (711)
...+++..|.....++.+.. |+.. |..++.+ +.+.|+.++|..+++......+.+..+...+...|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 45678999999998888763 5533 3344444 45899999999999988888888888999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC----------ChHHH
Q 005161 104 EEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVS----------NMEAA 173 (711)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a 173 (711)
..+|++..+.. |+..-...+.-+|.|.+.+.+-.++--++-+. ++.+...+=+++..+.... -..-|
T Consensus 97 ~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 99999998865 66777778888899988887766655555553 3344544444444433221 13345
Q ss_pred HHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005161 174 QRLFLSIKDVGLEPDE-TTYRSMIEGWGRAGNYREAKWYYK-ELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDML 251 (711)
Q Consensus 174 ~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 251 (711)
.+.++.+.+.+.+-.. .-...-...+-..|++++|++++. ...+.-..-+...-+.-+..+...+++.+..++..++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 6666666654311111 111111233446788999998884 33333233344445566777788888888888888888
Q ss_pred HCCCCC
Q 005161 252 NMGCQH 257 (711)
Q Consensus 252 ~~~~~~ 257 (711)
..+++.
T Consensus 254 ~k~~Dd 259 (932)
T KOG2053|consen 254 EKGNDD 259 (932)
T ss_pred HhCCcc
Confidence 877664
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=1.8e-07 Score=86.21 Aligned_cols=81 Identities=15% Similarity=0.100 Sum_probs=40.8
Q ss_pred CCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCCh-hhHHHHH
Q 005161 273 RTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHL-ANAVKIY 351 (711)
Q Consensus 273 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~ 351 (711)
.+.+|..+|+++.++ ..+++.+.+.+..+....|++++|.+++.+....++. ++.++..++.+....|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 466666666665444 2235555666666666666666666666665544433 334444444444444444 3344444
Q ss_pred HHHh
Q 005161 352 SHMH 355 (711)
Q Consensus 352 ~~~~ 355 (711)
.++.
T Consensus 260 ~qL~ 263 (290)
T PF04733_consen 260 SQLK 263 (290)
T ss_dssp HHCH
T ss_pred HHHH
Confidence 4443
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=2e-05 Score=88.31 Aligned_cols=377 Identities=13% Similarity=0.051 Sum_probs=234.1
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHH
Q 005161 259 SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSC 338 (711)
Q Consensus 259 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 338 (711)
......+..+...|++.+|........+... -..............|+++.+..++..+.......++.........+
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~--~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDAQL--LRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH--HHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 5556667777778887777665544322110 01112223344556788888888877764322222222334445556
Q ss_pred HccCChhhHHHHHHHHhhcCC------CCcHH--HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHH
Q 005161 339 KDSGHLANAVKIYSHMHICDG------KPNLH--IMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDL----IAFTVVVR 406 (711)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~~~------~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~ 406 (711)
...|+++++...+......-. .+... ....+...+...|++++|...++.........+. ...+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 678999999999988754311 11111 2222334556889999999999988763212222 23455666
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC--C-ChhhHHHH
Q 005161 407 MYVKAGSLKDACAVLETMEKQKDI----EPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKS----GIT--W-NQELYDCV 475 (711)
Q Consensus 407 ~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l 475 (711)
.+...|++++|...+......... .+.......+...+...|+++.|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 677899999999999887543211 112234556677788999999999999887553 211 1 12234445
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC--CCCc--cHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--CchhHH-----HHH
Q 005161 476 INCCARALPIDELSRVFDEMLQH--GFTP--NIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL--VDVISY-----NTI 544 (711)
Q Consensus 476 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~-----~~l 544 (711)
...+...|++++|...+.+.... ...+ ....+..+...+...|+.++|.+.+........ .....+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 55677789999999999887642 1112 233344456677789999999999988755321 111111 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHH
Q 005161 545 IAAYGQNKNLESMSSTVQEMQFDGFSVSL---EAYNSMLDAYGKEGQMENFKNVLRRMKET----SCTFD-HYTYNIMID 616 (711)
Q Consensus 545 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~ 616 (711)
+..+...|+.+.|...+............ ..+..+..++...|+.++|...+++.... |..++ ..+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 24455688999999988775442211111 11345667788899999999999988752 22222 235566678
Q ss_pred HHhhcCCHHHHHHHHHHHHHC
Q 005161 617 IYGEQGWINEVVGVLTELKEC 637 (711)
Q Consensus 617 ~~~~~g~~~~A~~~~~~~~~~ 637 (711)
++...|+.++|...+.+..+.
T Consensus 740 a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888999999999999999985
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=5.8e-07 Score=88.20 Aligned_cols=208 Identities=13% Similarity=-0.005 Sum_probs=92.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 476 INCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLE 555 (711)
Q Consensus 476 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 555 (711)
...+...|-...|..+|++.. .|...+.+|...|+..+|..+..+..+ .+|++..|..+++......-++
T Consensus 405 aell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHH
Confidence 334444444445555444332 233344445555555555555444444 3445555555544444444444
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 005161 556 SMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELK 635 (711)
Q Consensus 556 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (711)
+|+++.+..... .-..+.....+.++++++.+.|+...+.+ +-...+|..+..+..+.++++.|.+.|....
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 444444432211 00011111122345555555555444421 2233444444444445555555555555544
Q ss_pred HCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHHHHH
Q 005161 636 ECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWM 704 (711)
Q Consensus 636 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~m 704 (711)
. ..|| ...||.+..+|.+.|+-.+|...+++..+.+ .-+...|...+-.....|.+++|.+.++++
T Consensus 547 t--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 547 T--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred h--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 4 3444 4445555555555555555555555555433 222333433334444555555555544444
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.86 E-value=2.9e-06 Score=89.37 Aligned_cols=226 Identities=12% Similarity=0.065 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 005161 434 AYLYCDMLRIYQQCGMLDKLSYLYYKILKSG-ITWN---QELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNV 509 (711)
Q Consensus 434 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 509 (711)
+..|-..|......++.+.|.++.++++..- +.-. ..+|.++++.-...|.-+...++|+++.+.. .....+..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 3445555555555555555555555554331 1101 1245555555555566677777777777642 23445667
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcC
Q 005161 510 MLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSV--SLEAYNSMLDAYGKEG 587 (711)
Q Consensus 510 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 587 (711)
|...|.+.+..++|.++++.|.+........|...+..+.+..+-+.|..++.+..+.- |. ........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhcC
Confidence 77778888888888888888777666777788888888888888788888887777652 22 2344555566667888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHhccCChHHHH
Q 005161 588 QMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD--LCSYNTLIKAYGIAGMVEDAV 663 (711)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~ 663 (711)
+.+.++.+|+..+.. .+--...|+.+++.-.++|+.+.+..+|++++..++.|. -..|...+.---..|+-+.+.
T Consensus 1615 DaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 888888888888765 345667888888888888888888888888888777765 344555554444455543333
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.82 E-value=0.00014 Score=69.50 Aligned_cols=174 Identities=14% Similarity=0.149 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHHhccCcHHHHHHHHH
Q 005161 450 LDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTP-NIITLNVMLDIYGKAKLFKRVRKLFS 528 (711)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 528 (711)
.+.....++++......--.-+|..+++...+..-++.|..+|.++.+.+..+ ++...++++..|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55566677776665444344577788888888888999999999999877666 6777788887665 678889999999
Q ss_pred HHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-
Q 005161 529 MAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVS--LEAYNSMLDAYGKEGQMENFKNVLRRMKETSCT- 605 (711)
Q Consensus 529 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 605 (711)
.-.+....++.-....+..+...++-..+..+|++....+.+++ ...|..+++.-..-|+...+.++-++.... ++
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a-f~~ 504 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA-FPA 504 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-cch
Confidence 88877777777777888888899999999999999988855554 578999999889999999999888877653 22
Q ss_pred ---CCHHHHHHHHHHHhhcCCHH
Q 005161 606 ---FDHYTYNIMIDIYGEQGWIN 625 (711)
Q Consensus 606 ---~~~~~~~~l~~~~~~~g~~~ 625 (711)
+....-..+++.|.-.+...
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccc
Confidence 22223344556665555543
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.81 E-value=0.00015 Score=69.23 Aligned_cols=186 Identities=11% Similarity=0.131 Sum_probs=129.9
Q ss_pred HHHHHHHHHhhhhcCCCccHhhHHHHHHHHH---ccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 005161 309 IDDAMKVLGDKRWKDTVFEDNLYHLLICSCK---DSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKL 385 (711)
Q Consensus 309 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 385 (711)
.+++..+++.....-..-+..+|..+.+.-- .....+.....+++++......-..+|...+....+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455555555443332223334444433222 2223667777777776553333445677788888888889999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005161 386 YLNLKSSGIRL-DLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSG 464 (711)
Q Consensus 386 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 464 (711)
|.++.+.+..+ +..+.++++.-|| .++.+.|.++|+.-.+..+ .+...-...+..+...++-..+..+|++....+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999876655 6777788887665 4688899999987666653 333444566777888899999999999999886
Q ss_pred CCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 465 ITWN--QELYDCVINCCARALPIDELSRVFDEMLQ 497 (711)
Q Consensus 465 ~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 497 (711)
+.++ ..+|..++.--+..|+...+.++-+++..
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5554 46899999999999999999988887764
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.80 E-value=1.2e-06 Score=75.34 Aligned_cols=159 Identities=12% Similarity=-0.004 Sum_probs=109.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 005161 508 NVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEG 587 (711)
Q Consensus 508 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 587 (711)
..+-..+...|+-+....+........+.+.......+....+.|++..|+..+.+..... ++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4455566667777777777766666666666666667777777777777777777776654 677777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHH
Q 005161 588 QMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVK 667 (711)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 667 (711)
+.+.|..-+.+..+. .+-++...+.+...+.-.||++.|..++......+ .-|..+-..+..+....|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777777777764 23345566677777777777777777777776642 2245666667777777777777776655
Q ss_pred HH
Q 005161 668 EM 669 (711)
Q Consensus 668 ~~ 669 (711)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.79 E-value=3.2e-06 Score=89.13 Aligned_cols=204 Identities=12% Similarity=0.097 Sum_probs=157.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCC-hhhH
Q 005161 118 NLENWLVMLNAYSQQGKLEEAELVLVSMREA-GFSP---NIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPD-ETTY 192 (711)
Q Consensus 118 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 192 (711)
+...|...|......++.++|+++.+++++. +++. -...|.+++..-..-|.-+...++|++..+. -| -..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHH
Confidence 3456777777777888888888888887753 2222 2345666666656667788888888888773 23 3347
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh--hHHHHHHHHHHh
Q 005161 193 RSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS--SILGTLLQAYEK 270 (711)
Q Consensus 193 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 270 (711)
..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.++++.-|... .++...+....+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 77888888888888888888888775 334566788888888888888888888888888777633 788888888889
Q ss_pred cCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCc
Q 005161 271 AGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVF 326 (711)
Q Consensus 271 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 326 (711)
.|+.+.+..+|+..+...|. -...|+.+++.-.+.|+.+.+..+|++....+..|
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 99999999999988888777 67788999998888899888888888888777664
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.78 E-value=1.3e-06 Score=79.84 Aligned_cols=184 Identities=14% Similarity=-0.065 Sum_probs=100.5
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCH---hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchh---HHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNV---ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCES---AYS 88 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 88 (711)
...+......+...|+++.|...|+.+++.. +.+. ..+..+..++.+.|++++|...++.+.+..|.+.. ++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3444445555555555555555555555432 1111 23344455555555555565555555555554322 344
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005161 89 AMITIYTRL--------SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTL 160 (711)
Q Consensus 89 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (711)
.+..++... |++++|.+.++.+....+. +...+..+.... .... .. ......+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~----~~~~------~~--------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD----YLRN------RL--------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH----HHHH------HH--------HHHHHHH
Confidence 444444433 4555555555555544322 111111111000 0000 00 0011245
Q ss_pred HHHhhccCChHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005161 161 MTGYGKVSNMEAAQRLFLSIKDVGLE--PDETTYRSMIEGWGRAGNYREAKWYYKELKHL 218 (711)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 218 (711)
...+.+.|++++|...|++..+..+. .....+..+..++...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66788999999999999998875321 23567888999999999999999999888765
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=1.6e-06 Score=85.18 Aligned_cols=222 Identities=10% Similarity=0.058 Sum_probs=174.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHH
Q 005161 394 IRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYD 473 (711)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 473 (711)
.+|-...-..+...+...|-...|+.+++++ ..|..++.+|+..|+..+|..+..+..+ -+|++..|.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc 461 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYC 461 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHH
Confidence 3444455566778888899999999999887 2567788889999999999988888777 467888888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC
Q 005161 474 CVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKN 553 (711)
Q Consensus 474 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 553 (711)
.+.+......-+++|.++.+....+ .-..+.....+.++++++.+.|+...+.++....+|..+.-+..+.++
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence 8888777777778888888765432 111122223447889999999999888888888899988888899999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 005161 554 LESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTE 633 (711)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (711)
++.|.+.|.....-. |-+...||.+-.+|.+.|+..+|...+++..+.+ ..+...|...+....+.|.+++|++.+.+
T Consensus 535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999888887652 5566789999999999999999999999998876 45556777777788888999999999988
Q ss_pred HHH
Q 005161 634 LKE 636 (711)
Q Consensus 634 ~~~ 636 (711)
+.+
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 876
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=1.8e-06 Score=78.88 Aligned_cols=189 Identities=11% Similarity=-0.119 Sum_probs=135.1
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHH
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE---SAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNL--ENW 122 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 122 (711)
.....+..+...+.+.|+++.|...|+.+....|.+. .++..+..+|.+.|++++|...++++.+..+.... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 4556677788888899999999999999999887653 57888999999999999999999999876543221 245
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHH
Q 005161 123 LVMLNAYSQQ--------GKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRS 194 (711)
Q Consensus 123 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (711)
..+..++... |+++.|.+.++.+.+..+ .+...+..+..... . ..... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~~~~----~------~~~~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEYAPDAKKRMDY----L------RNRLA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChhHHHHHHHHHH----H------HHHHH--------HHHHH
Confidence 5555555554 678889999998887632 22223322221100 0 00000 11224
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-Cc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005161 195 MIEGWGRAGNYREAKWYYKELKHLGY-KP-NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGC 255 (711)
Q Consensus 195 li~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (711)
+...+.+.|++.+|...+++..+... .| ....+..+..++...|+.++|...++.+....+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56778899999999999999987632 12 356788999999999999999999998887654
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.73 E-value=3.1e-06 Score=73.65 Aligned_cols=150 Identities=11% Similarity=0.039 Sum_probs=119.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (711)
+..|...|+++......+.+. .|. . .+...++.+++...++...+.+|.+...|..+..+|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~----~~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA----DPL-H-------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh----Ccc-c-------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 346889999888755543221 111 1 1223678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHH
Q 005161 102 KAEEVIRLIREDKVVPNLENWLVMLNAY-SQQGK--LEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFL 178 (711)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 178 (711)
+|...|++....++. +...+..+..++ .+.|+ .++|.+++++..+.+ +.+...+..+...+.+.|++++|...|+
T Consensus 91 ~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999887755 677777777764 67677 589999999999986 3477888888889999999999999999
Q ss_pred HHHhcCC
Q 005161 179 SIKDVGL 185 (711)
Q Consensus 179 ~~~~~~~ 185 (711)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9988653
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.72 E-value=3.2e-06 Score=72.83 Aligned_cols=159 Identities=16% Similarity=0.079 Sum_probs=112.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 54 GMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 54 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
..+-..+.-.|+-+.+..+........+.........+....++|++.+|...+++.....+. |..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHcc
Confidence 445556666777777777777666666655566666777778888888888888877665433 6777777888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 005161 134 KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYK 213 (711)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 213 (711)
+++.|..-|.+..+.. +.++...|.|...+.-.|+.+.|..++......+. .|...-..+.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888888887777763 34666777777777777888888888877766442 355566666667777788888777765
Q ss_pred HH
Q 005161 214 EL 215 (711)
Q Consensus 214 ~~ 215 (711)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 44
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.71 E-value=0.00057 Score=72.12 Aligned_cols=220 Identities=16% Similarity=0.076 Sum_probs=125.4
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV----------- 116 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------- 116 (711)
.+...+..|+..+...+++++|.++.+...+..|.....|..++..+.+.+++..+..+ .+.+.-..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHH
Confidence 44556666666666667777777777766666666555555555566666665555444 22221100
Q ss_pred -------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCCh
Q 005161 117 -------PNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDE 189 (711)
Q Consensus 117 -------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 189 (711)
-+..++..++.+|.+.|+.++|..+++++++.. +.|+.+.|.+...|+.. +.++|.+++.+....
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------ 178 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------ 178 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------
Confidence 122355556666666677777777777777665 44666667777666666 677777666665542
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--ChhHHHHHHHH
Q 005161 190 TTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ--HSSILGTLLQA 267 (711)
Q Consensus 190 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 267 (711)
+...+++..+.++..++....+. +...+. ++.+.+...-.. ...++..+-..
T Consensus 179 ---------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 179 ---------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred ---------HHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHHHhhhccchhHHHHHHHHHH
Confidence 44455666666666666554211 122222 222222222110 11344455566
Q ss_pred HHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHH
Q 005161 268 YEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYV 304 (711)
Q Consensus 268 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (711)
|...++++++..+++.+++..+. |..+..-++..|.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 66777777888888877777666 6666666666665
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=1.2e-06 Score=76.23 Aligned_cols=128 Identities=13% Similarity=0.125 Sum_probs=111.8
Q ss_pred cCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH-HhcCC--HHHHH
Q 005161 28 RGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY-TRLSL--YEKAE 104 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~ 104 (711)
.++.+++...++..++.+ +.|...|..+..+|...|+++.|...|+++.+.+|.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 566788888999988876 778999999999999999999999999999999999999999999874 67777 59999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005161 105 EVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYN 158 (711)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (711)
+++++..+.++. +..++..+...+...|++++|...|+.+.+.. +|+...+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH
Confidence 999999998866 77888899999999999999999999999875 44554443
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=1.3e-05 Score=83.25 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=69.8
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+...+..|.++..+.|.+++|+.+++.+.+..|....++..++.++.+.+++++|+..+++..+.++. +......+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555555555555555555555554433 44444455555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 005161 129 YSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKD 182 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (711)
+.+.|++++|..+|+++...+ +.+..++..+...+.+.|+.++|...|+...+
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555422 22344555555555555555555555555544
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=2.7e-06 Score=69.80 Aligned_cols=120 Identities=10% Similarity=-0.075 Sum_probs=89.6
Q ss_pred HHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005161 34 GAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED 113 (711)
Q Consensus 34 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 113 (711)
...+|+..++. .|+. +..+...+...|++++|...|+.+...+|.+..+|..+..++.+.|++++|...|+.....
T Consensus 12 ~~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 12 PEDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34566666664 3443 4456677778888888888888888888888888888888888888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005161 114 KVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNT 159 (711)
Q Consensus 114 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (711)
++. +..++..+..++.+.|++++|...++...+.. +.+...+..
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~ 131 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEI 131 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 654 66777788888888888888888888888763 224444433
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=4.9e-06 Score=86.31 Aligned_cols=204 Identities=13% Similarity=0.035 Sum_probs=153.7
Q ss_pred CCchHhHHHHHHHHHhcCChHHHH-HHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHH
Q 005161 12 KLNFQLFNTLIYACNKRGCVELGA-KWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAM 90 (711)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 90 (711)
..+..+..-+=.+....|..++|- +++.++.+ ++....+.....+++.-.....+..+....++..|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 92 (694)
T PRK15179 25 ASGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLV 92 (694)
T ss_pred CCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHH
Confidence 344444444445677888877763 44454433 22222333344444444445556666678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCh
Q 005161 91 ITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNM 170 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (711)
..+..+.|.+++|+.+++...+..+. +...+..++..+.+.+++++|+...++..... +.+......+..++.+.|++
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcch
Confidence 99999999999999999999987755 66788889999999999999999999999875 34777788888999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHH
Q 005161 171 EAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLI 231 (711)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 231 (711)
++|..+|+++...++ -+..++..+...+-..|+.++|...|++..+. ..|....|+..+
T Consensus 171 ~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 171 EQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 999999999998442 34788899999999999999999999999876 233444444433
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=4.4e-05 Score=65.35 Aligned_cols=186 Identities=11% Similarity=0.072 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHhc---C-CCCChhh-HHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHH
Q 005161 448 GMLDKLSYLYYKILKS---G-ITWNQEL-YDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKR 522 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 522 (711)
.+.++..+++.++... + ..++..+ |..++-+....++.+-|...++++.++- +-+......-.-.+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 3455555555554321 2 2223222 2333334444555555555555554431 2222221111112333455555
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005161 523 VRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET 602 (711)
Q Consensus 523 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (711)
|.++++.+.+.+|.|..++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 555555555555555555544444444445544555555554444 3445555555555555555555555555555432
Q ss_pred CCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHHH
Q 005161 603 SCTFDHYTYNIMIDIYGEQG---WINEVVGVLTELKE 636 (711)
Q Consensus 603 ~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 636 (711)
.|.++..+..+.+.+.-.| +.+.|.++|.+..+
T Consensus 184 -~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 184 -QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred -CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1222223333333332222 34445555555544
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.61 E-value=2.1e-06 Score=70.52 Aligned_cols=106 Identities=9% Similarity=-0.085 Sum_probs=93.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR 96 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (711)
.+......+...|++++|...|+.++... +.+...|..+..++...|++++|...|+.+...+|....++..+..++..
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 35567788899999999999999999876 66888999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005161 97 LSLYEKAEEVIRLIREDKVVPNLENWLV 124 (711)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 124 (711)
.|++++|...|+......+. +...+..
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~-~~~~~~~ 131 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYA-DASWSEI 131 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 99999999999999886643 3444433
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.60 E-value=2e-05 Score=82.58 Aligned_cols=220 Identities=12% Similarity=0.095 Sum_probs=155.9
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---------
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC--------- 83 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------- 83 (711)
.+...+..++..+...+++++|.++.+..++.. +.....|..+.-++.+.++.+.+..+ .+...-+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 347788899999999999999999999877753 33344444444466777777766655 333322222
Q ss_pred ----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005161 84 ----------ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPN 153 (711)
Q Consensus 84 ----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 153 (711)
..++..++.+|-+.|+.++|..+++++++.++. |..+.+.+...|+.. ++++|.+++.+.+..
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 267888999999999999999999999998865 889999999999999 999999999988764
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCccHhhHHHHHH
Q 005161 154 IVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHL-GYKPNASNLYTLIN 232 (711)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~ 232 (711)
+...+++..+.++++++....+ -|...+..+.+ .+... |..--..++..+-.
T Consensus 179 ----------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~----------------ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 179 ----------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIER----------------KVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred ----------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHH----------------HHHhhhccchhHHHHHHHHH
Confidence 5566788888888888887432 12222222221 22111 11222334455556
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHH
Q 005161 233 LHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYE 269 (711)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 269 (711)
.|...++++.+..+++.+++..+.+......++..|.
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 6677777888888888888887777777777777776
No 130
>PF12854 PPR_1: PPR repeat
Probab=98.58 E-value=7.7e-08 Score=55.19 Aligned_cols=32 Identities=41% Similarity=0.733 Sum_probs=19.6
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 184 GLEPDETTYRSMIEGWGRAGNYREAKWYYKEL 215 (711)
Q Consensus 184 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 215 (711)
|+.||..||++||.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666655
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=7.2e-05 Score=64.62 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 005161 402 TVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCAR 481 (711)
Q Consensus 402 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 481 (711)
..-...|++.+++++|++..+... +......-+..+.+..+.+-|...+++|.+.. +..+.+.+..++.+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~ 181 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVK 181 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHH
Confidence 333445667777777777766531 22333333445556666666666666666543 44455555554443
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHH-
Q 005161 482 ----ALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLES- 556 (711)
Q Consensus 482 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 556 (711)
.+.+..|.-+|+++.+. .+|+..+.+....++...|++++|..+++.+......++.+...++..-...|...+
T Consensus 182 la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred HhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 34567777777777653 467777777777777777888888888877777777777777666666555555433
Q ss_pred HHHHHHHHHH
Q 005161 557 MSSTVQEMQF 566 (711)
Q Consensus 557 a~~~~~~~~~ 566 (711)
..+.+.++..
T Consensus 261 ~~r~l~QLk~ 270 (299)
T KOG3081|consen 261 TERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHh
Confidence 3344444443
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=9.3e-05 Score=63.41 Aligned_cols=189 Identities=16% Similarity=0.057 Sum_probs=142.7
Q ss_pred cCChHHHHHHHHHHhH---cC-CCCCHhh-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHH
Q 005161 28 RGCVELGAKWFHMMLE---CD-VQPNVAT-FGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEK 102 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~---~~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (711)
..+.++.++++..++. +| ..++..+ |..++-+....|+.+.|...++.+...-|.+..+-..-...+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 4567888888888775 33 4455443 44566667788999999999999998887765555555666778899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 005161 103 AEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKD 182 (711)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (711)
|.++++.++..++. |..++-.-+-..-..|+--+|.+-+....+. +..|...|..+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999999998855 6666766666666778877888888888776 677999999999999999999999999999886
Q ss_pred cCCCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 005161 183 VGLEPDETTYRSMIEGWGRA---GNYREAKWYYKELKHLG 219 (711)
Q Consensus 183 ~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~ 219 (711)
..+ .+...+..+...+.-. .+.+-|.++|.+..+..
T Consensus 183 ~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 432 2333444555544433 35667888898888763
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=6.3e-05 Score=64.96 Aligned_cols=139 Identities=17% Similarity=0.243 Sum_probs=71.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh---
Q 005161 125 MLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGR--- 201 (711)
Q Consensus 125 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 201 (711)
-+..|...|++++|.+...... +......=+.++.+..+++-|.+.++.|.+- -+-.|.+.|..+|++
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 3444556666666666555411 2222222233344555666666666666552 233444445555443
Q ss_pred -cCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCC
Q 005161 202 -AGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGR 273 (711)
Q Consensus 202 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 273 (711)
.+....|.-+|++|-+. ..|++.+.+....++...|++++|..+++.++...+..+.++..++..-...|.
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 23455666666666543 345555666666666666666666666666665555544444444444433333
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=8.1e-05 Score=70.37 Aligned_cols=148 Identities=13% Similarity=0.054 Sum_probs=108.4
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 005161 513 IYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENF 592 (711)
Q Consensus 513 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 592 (711)
.+...|++++|+..+..+....|.|+..+......+.+.++.++|.+.++.+.... |........+..++.+.|++.+|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHH
Confidence 45567888888888888887777788888888888888888888888888887763 33355666777888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHc
Q 005161 593 KNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMREN 672 (711)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 672 (711)
..+++..... .+.|+..|..|..+|...|+..+|.... ...|...|+++.|+..+....+.
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 8888887765 4667778888888888888777765433 34556778888888888887764
Q ss_pred CCCCCcchH
Q 005161 673 GIEPDKITY 681 (711)
Q Consensus 673 ~~~p~~~~~ 681 (711)
..++..+|
T Consensus 455 -~~~~~~~~ 462 (484)
T COG4783 455 -VKLGFPDW 462 (484)
T ss_pred -ccCCcHHH
Confidence 33444333
No 135
>PF12854 PPR_1: PPR repeat
Probab=98.53 E-value=1.4e-07 Score=54.11 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=22.5
Q ss_pred CCCCchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 005161 10 GAKLNFQLFNTLIYACNKRGCVELGAKWFHMM 41 (711)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~ 41 (711)
|+.||..+|+++|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66677777777777777777777777777665
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.47 E-value=7.5e-06 Score=67.19 Aligned_cols=97 Identities=14% Similarity=0.021 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYS 130 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (711)
.....+...+...|++++|...|+.+...+|.....|..+...+...|++++|...++.....++. +...+..+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 334445555556666666666666666666655666666666666666666666666665554432 4445555555666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 005161 131 QQGKLEEAELVLVSMREA 148 (711)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~ 148 (711)
..|++++|...++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666654
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=9.2e-05 Score=70.01 Aligned_cols=138 Identities=14% Similarity=0.000 Sum_probs=90.5
Q ss_pred HccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005161 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAEL 140 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 140 (711)
...|+++.|+..++.+....|.+...+.....++.+.++..+|.+.++.+....+. .......+..+|.+.|+..+|..
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHH
Confidence 35667777777777777777666666667777777777777777777777665433 24455566677777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005161 141 VLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHL 218 (711)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 218 (711)
+++...... +.|+..|..|..+|...|+..++..-..+. +...|+++.|...+....+.
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHh
Confidence 777766653 446677777777777777666665544332 33456667776666666554
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.42 E-value=1.2e-05 Score=66.00 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=84.9
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005161 71 FAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGF 150 (711)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 150 (711)
+.|+.+...+|.+......++..+...|++++|.+.++.+...++. +...+..+...+.+.|+++.|...++...+.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 3566667777766667777888888888888888888887776543 66777777888888888888888888877764
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcC
Q 005161 151 SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVG 184 (711)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (711)
+.+...+..+...+...|+++.|...|+...+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4466677777778888888888888888877743
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.30 E-value=5e-05 Score=62.76 Aligned_cols=115 Identities=18% Similarity=0.119 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 005161 63 SWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNL--ENWLVMLNAYSQQGKLEE 137 (711)
Q Consensus 63 ~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 137 (711)
.++...+...++.+....+.. ..+...+...+...|++++|...|+.+....+.|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 444455555555555444433 223333445555555555555555555444322211 122334444445555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHH
Q 005161 138 AELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLS 179 (711)
Q Consensus 138 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 179 (711)
|...++..... ......+.....++.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555443222 12333344444555555555555555543
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.28 E-value=5.5e-05 Score=62.51 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=63.2
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPN--VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAM 90 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 90 (711)
..|..++..+ ..++...+...++.+.+...... ......+...+...|++++|...|+++....+.+ ..+...+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3444444444 25555555555666655431111 1122223344555666666666666666554332 2344455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 91 ITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVS 144 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 144 (711)
..++...|++++|+..++...... .....+......+.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566666666666666665432222 2233444555566666666666665554
No 141
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.23 E-value=9.1e-05 Score=59.52 Aligned_cols=98 Identities=8% Similarity=-0.101 Sum_probs=84.3
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
....-.+...+...|++++|..+|+.+...+|.+..-|..|..++...|++++|+..|......++. ++.++-.+..++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 3344456666778999999999999999999998999999999999999999999999998887764 777888888999
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 005161 130 SQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~ 148 (711)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=7.6e-05 Score=71.47 Aligned_cols=129 Identities=14% Similarity=0.134 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTG 163 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (711)
......++..+...++++.|+++++++...+ |+ ....++..+...++-.+|.+++++.++.. +.+..........
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455566667777777888888888877755 33 33346666666777777888777777653 3456666666677
Q ss_pred hhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005161 164 YGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHL 218 (711)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 218 (711)
+.+.++++.|+.+.+++.+..+ -+..+|..|..+|.+.|+++.|+-.++.+.-.
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 7778888888888888777532 34447888888888888888888777776543
No 143
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.17 E-value=0.0056 Score=60.74 Aligned_cols=156 Identities=16% Similarity=0.170 Sum_probs=76.4
Q ss_pred cCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhc-CCCCcHHHHHHHHHHHHccCCHHHHHH
Q 005161 306 HGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHIC-DGKPNLHIMCTMIDTYSVMGMFTEAEK 384 (711)
Q Consensus 306 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 384 (711)
-|++++|.+++-++..++.. +..+.+.|++-...++++.--.. +-..-..+|+.+...+.....+++|.+
T Consensus 747 ~g~feeaek~yld~drrDLA---------ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA---------IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhhhh---------HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666555544332 44444555555555544331100 001112355666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005161 385 LYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSG 464 (711)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 464 (711)
.|..-... ...+.++.+..++++-..+-..+ +.+......+...+...|.-++|.+.+-+.-..
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p- 881 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP- 881 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhccCc-
Confidence 65543321 22445555555555544444444 234444555566666666666666544332111
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 005161 465 ITWNQELYDCVINCCARALPIDELSRVFDE 494 (711)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 494 (711)
...+..|...+++.+|.++-+.
T Consensus 882 --------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 882 --------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHh
Confidence 1234455556666666655443
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=8e-05 Score=71.30 Aligned_cols=130 Identities=13% Similarity=0.054 Sum_probs=109.4
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+......|+..+...++++.|..+|+++.+.+|. ....+++.+...++..+|.+++.+.+...+. +...+..-...
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~f 243 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEF 243 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3444456777777889999999999999998864 5667888998999999999999998876654 66777777888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhc
Q 005161 129 YSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDV 183 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (711)
|.+.++++.|..+.+++.+.. +.+-.+|..|+.+|.+.|+++.|+..++.++-.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999999999974 345669999999999999999999999988753
No 145
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.0018 Score=60.08 Aligned_cols=263 Identities=14% Similarity=0.030 Sum_probs=166.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC
Q 005161 20 TLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSL 99 (711)
Q Consensus 20 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (711)
..-..+....++..|+..+..+++.. +.+..-|..-...+...|++++|..-.+.-.+..+..........+++...+.
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 33445666778888999999999876 33455666666777778888888877766666555433344444444444444
Q ss_pred HHHHHHHHH---------------HHHhCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005161 100 YEKAEEVIR---------------LIREDKV-VPNLENWLVM-LNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMT 162 (711)
Q Consensus 100 ~~~a~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 162 (711)
..+|.+.++ ....... .|...++..+ ..++.-.|++++|..+--..++.. ....+..+++
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vr 209 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVR 209 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhc
Confidence 444443333 2222211 1333344333 345666799999988888888763 2233334443
Q ss_pred --HhhccCChHHHHHHHHHHHhcCCCCChhh-------------HHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCccH
Q 005161 163 --GYGKVSNMEAAQRLFLSIKDVGLEPDETT-------------YRSMIEGWGRAGNYREAKWYYKELKHLG---YKPNA 224 (711)
Q Consensus 163 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~ 224 (711)
++.-.++.+.+...|++....+ ||-.. +..-..-..++|++..|.+.|.+.+..+ ..|+.
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred ccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 3345678888988888887754 33222 1112333456788888888888887652 44556
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhcc
Q 005161 225 SNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQH 288 (711)
Q Consensus 225 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (711)
..|.....+..+.|+..+|+.-.+...+.++.....+..-+.++...+++++|.+-++.+....
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6677777777888888888888888887665555566666677777777888887777766543
No 146
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.08 E-value=0.01 Score=55.91 Aligned_cols=147 Identities=10% Similarity=0.136 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 469 QELYDCVINCCARALPIDELSRVFDEMLQHG-FTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAA 547 (711)
Q Consensus 469 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 547 (711)
..+|...++...+..-.+.|..+|-++.+.+ +.+++..+++++..++ .|+..-|..+|+.-....+.++.-....+..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3456666777777777788888888888777 5567777777776554 5677778888876666655555555566666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005161 548 YGQNKNLESMSSTVQEMQFDGFSVS--LEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYG 619 (711)
Q Consensus 548 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (711)
+...++-+.|..+|+..+.. +..+ ...|..+++.-..-|+...+..+-+++.+. .|...+.......|.
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 77778878888888754433 1222 457777888777888888888877777763 455544444444443
No 147
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.08 E-value=0.011 Score=55.92 Aligned_cols=268 Identities=15% Similarity=0.120 Sum_probs=142.2
Q ss_pred CcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCChhh-HHHHHHHHHccCCHHHHHHHHHHHHhCCCC----ccH
Q 005161 432 PDAYLYCDMLRIYQQCG--MLDKLSYLYYKILKSGITWNQEL-YDCVINCCARALPIDELSRVFDEMLQHGFT----PNI 504 (711)
Q Consensus 432 ~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~ 504 (711)
|.......++....-.. ...--.++++.....-+.|+... ...+...+.+ +.+++..+-+.+....+. .-.
T Consensus 221 peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li 298 (549)
T PF07079_consen 221 PEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELI 298 (549)
T ss_pred cHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44444444444433221 22223333344444444554332 2333333333 445555554444432111 123
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHH------HHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChh
Q 005161 505 ITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISY------NTIIAAYG----QNKNLESMSSTVQEMQFDGFSVSLE 574 (711)
Q Consensus 505 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~ 574 (711)
.++..++....+.++...|.+.+..+....|.....- ..+-+..+ ...+...=+.+|+.....++..- .
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-Q 377 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-Q 377 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-H
Confidence 4566677777788888888888887776665322111 11112222 11122233445555554432211 1
Q ss_pred hHHHH---HHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHhhc---CCHHHHHHHHHHHHHCCCCCC-
Q 005161 575 AYNSM---LDAYGKEGQ-MENFKNVLRRMKETSCTFDHYTYNIMI----DIYGEQ---GWINEVVGVLTELKECGLRPD- 642 (711)
Q Consensus 575 ~~~~l---~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~~A~~~~~~~~~~~~~p~- 642 (711)
....+ ..-+.+.|. -++|..+++.+.+-. +-|...-|... .+|... ..+.+-..+-+-+.+.|+.|-
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~ 456 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT 456 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence 11122 233455565 788888888887631 23333322222 223221 223444444444556777763
Q ss_pred ---hHhHHHHHHH--HhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHHHHHH
Q 005161 643 ---LCSYNTLIKA--YGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMK 705 (711)
Q Consensus 643 ---~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 705 (711)
...-|.|..+ +...|++.++.-.-..+.+ +.|++.+|..++-++....++++|.++++.+.
T Consensus 457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3345666544 5578999998888777777 88988999999999999999999999887653
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=0.00022 Score=56.90 Aligned_cols=94 Identities=16% Similarity=0.040 Sum_probs=42.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 005161 55 MLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVP--NLENWLVMLNAY 129 (711)
Q Consensus 55 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 129 (711)
.+...+.+.|++++|...|..+.+..+.+ ..++..++.++.+.|++++|...|+.+....+.. ....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 34444444455555555555544443322 2334444455555555555555555444322111 123344444444
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 005161 130 SQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~ 148 (711)
.+.|+.++|...++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 4455555555555554444
No 149
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.02 E-value=0.00073 Score=55.00 Aligned_cols=155 Identities=15% Similarity=0.069 Sum_probs=92.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHhcC
Q 005161 20 TLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLV-CESAYSAMITIYTRLS 98 (711)
Q Consensus 20 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 98 (711)
.+..+..+.=|++...+-..+-.. .-|+..-...|...+.+.|+..+|...|......-.. +......+.++....+
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 334444444444444333332222 2466666667777778888888888888777653332 2456667777777788
Q ss_pred CHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 99 LYEKAEEVIRLIREDKVV-PNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
++..|...++++-+.++. -++.+...+.+.|...|++..|...|+.....- |+...-......+.+.|+.+++..-+
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 888888888777654421 123345566777777888888888888777753 34333333334455666655554443
Q ss_pred H
Q 005161 178 L 178 (711)
Q Consensus 178 ~ 178 (711)
.
T Consensus 217 ~ 217 (251)
T COG4700 217 V 217 (251)
T ss_pred H
Confidence 3
No 150
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00057 Score=63.17 Aligned_cols=89 Identities=10% Similarity=-0.028 Sum_probs=63.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccC
Q 005161 582 AYGKEGQMENFKNVLRRMKET---SCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAG 657 (711)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 657 (711)
-..+.|.+..|.+.+.+.+.. +..|+...|.....+..+.|+.++|+.--++..+ +.|. ...|..-..++...+
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888752 3344555666666777888888888888888765 3443 344555556677788
Q ss_pred ChHHHHHHHHHHHHc
Q 005161 658 MVEDAVGLVKEMREN 672 (711)
Q Consensus 658 ~~~~A~~~~~~~~~~ 672 (711)
+|++|++-+++..+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888898888888763
No 151
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=0.015 Score=57.84 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=91.1
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCchhHHHH-------HHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005161 47 QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLG-LVCESAYSA-------MITIYTRLSLYEKAEEVIRLIREDKVVPN 118 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 118 (711)
.|.+..|..+...-...-.++-|+..|-+...-. ..-..-... -..+-.--|.+++|.++|-++...+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 5888888888877666677888888776553311 100000000 0111222367777777776665433
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 005161 119 LENWLVMLNAYSQQGKLEEAELVLVSMREA-GFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIE 197 (711)
Q Consensus 119 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 197 (711)
..+..+.+.|++-...+++..--.. .-+.-...++.+...++....++.|.+.|..-.. ....+.
T Consensus 765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~e 830 (1189)
T KOG2041|consen 765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIE 830 (1189)
T ss_pred -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHH
Confidence 2355566667766555544321110 0001134566666666666666666666654322 122345
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHH
Q 005161 198 GWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTL 247 (711)
Q Consensus 198 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 247 (711)
++.+...+++-..+...+.+ +...+-.+..++.+.|--++|.+.+
T Consensus 831 cly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 55555555555444444332 3333444555555555555555443
No 152
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.98 E-value=1.4e-05 Score=46.89 Aligned_cols=33 Identities=36% Similarity=0.648 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc
Q 005161 191 TYRSMIEGWGRAGNYREAKWYYKELKHLGYKPN 223 (711)
Q Consensus 191 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 223 (711)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677778888888888888888888877777776
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.98 E-value=0.00029 Score=56.17 Aligned_cols=101 Identities=15% Similarity=-0.006 Sum_probs=84.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCC--CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQ--PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAM 90 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 90 (711)
.++......+.+.|++++|.+.|..+++.... .....+..+..++.+.|+++.|...|+.+....|.. ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45677888899999999999999999986421 113466678899999999999999999999877664 4678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005161 91 ITIYTRLSLYEKAEEVIRLIREDKVV 116 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 116 (711)
..++.+.|++++|...++++....+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 99999999999999999999887644
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.96 E-value=0.00014 Score=55.36 Aligned_cols=89 Identities=25% Similarity=0.218 Sum_probs=40.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCH
Q 005161 21 LIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLY 100 (711)
Q Consensus 21 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (711)
+...+...|++++|...++.+++.. +.+...+..+..++...|+++.|.+.|.......+....++..++.++...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3344444455555555555444432 222233344444444444455555555444444444334444444444444444
Q ss_pred HHHHHHHHHH
Q 005161 101 EKAEEVIRLI 110 (711)
Q Consensus 101 ~~a~~~~~~~ 110 (711)
++|...++..
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.95 E-value=0.0031 Score=56.97 Aligned_cols=74 Identities=8% Similarity=-0.049 Sum_probs=51.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchh---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 55 MLMGLYKKSWNVEEAEFAFNQMRKLGLVCES---AYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 55 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
.....+.+.|+++.|.+.|+.+....|.+.. +...++.+|.+.+++++|...++++.+..+......+...+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 3444556778899999999988888877643 4467778888888898888888888876544333333333333
No 156
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.95 E-value=1.6e-05 Score=46.68 Aligned_cols=32 Identities=63% Similarity=0.862 Sum_probs=14.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 005161 646 YNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD 677 (711)
Q Consensus 646 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 677 (711)
|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.94 E-value=0.00017 Score=54.97 Aligned_cols=93 Identities=27% Similarity=0.184 Sum_probs=51.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 54 GMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 54 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
..+...+...|++++|...|..+.+..+....++..+..++...+++++|.+.++......+. +..++..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHH
Confidence 334445555666666666666666555554455555666666666666666666655544322 2234445555555555
Q ss_pred CHHHHHHHHHHHHH
Q 005161 134 KLEEAELVLVSMRE 147 (711)
Q Consensus 134 ~~~~a~~~~~~~~~ 147 (711)
+++.|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 55655555555544
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.94 E-value=2e-05 Score=57.82 Aligned_cols=80 Identities=20% Similarity=0.171 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005161 63 SWNVEEAEFAFNQMRKLGLVC--ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAEL 140 (711)
Q Consensus 63 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 140 (711)
.|+++.|+.+|+++.+..+.+ ...+..++.+|.+.|++++|.++++. .+.+.. +......+..++.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 355566666666665555532 23344456666666666666666655 222211 22333344555666666666666
Q ss_pred HHHH
Q 005161 141 VLVS 144 (711)
Q Consensus 141 ~~~~ 144 (711)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5553
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.93 E-value=0.00034 Score=67.61 Aligned_cols=92 Identities=16% Similarity=0.058 Sum_probs=66.2
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (711)
...+...|+++.|++.|..+++.. +.+...|..+..+|.+.|++++|+..++++.+.+|....+|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 345666777777777777777764 4456666667777777777777777777777777776777777777777777777
Q ss_pred HHHHHHHHHHhCC
Q 005161 102 KAEEVIRLIREDK 114 (711)
Q Consensus 102 ~a~~~~~~~~~~~ 114 (711)
+|+..|+..+..+
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 7777777776654
No 160
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=2.1e-05 Score=45.66 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHhCcCC
Q 005161 680 TYTNMITALQRNDKFLEAIKWSLWMKQIGLQD 711 (711)
Q Consensus 680 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~ 711 (711)
+|+.++.+|.+.|+++.|.+++++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
No 161
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=2.2e-05 Score=45.57 Aligned_cols=33 Identities=30% Similarity=0.564 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 005161 190 TTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP 222 (711)
Q Consensus 190 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 222 (711)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666665554
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00082 Score=59.67 Aligned_cols=86 Identities=20% Similarity=0.150 Sum_probs=44.7
Q ss_pred HhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 005161 26 NKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEE 105 (711)
Q Consensus 26 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 105 (711)
.+.+++.+|+..|..+++.. +.|...|.....+|++.|.++.|.+-.+.....+|....+|..|..+|...|++++|++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 34455555555555555543 33444444455555555555555555555555555545555555555555555555555
Q ss_pred HHHHHHh
Q 005161 106 VIRLIRE 112 (711)
Q Consensus 106 ~~~~~~~ 112 (711)
.|++.+.
T Consensus 171 aykKaLe 177 (304)
T KOG0553|consen 171 AYKKALE 177 (304)
T ss_pred HHHhhhc
Confidence 5555444
No 163
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.88 E-value=0.0011 Score=51.62 Aligned_cols=106 Identities=12% Similarity=0.017 Sum_probs=67.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC---chhHHHHHHHHHH
Q 005161 21 LIYACNKRGCVELGAKWFHMMLECDVQPN--VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLV---CESAYSAMITIYT 95 (711)
Q Consensus 21 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~ 95 (711)
...++-..|+.++|+.+|+..++.|.... ...+..+...|...|++++|..+|+......|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34556677888888888888887765443 334555666777788888888888877776555 3334444555677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 96 RLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYS 130 (711)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (711)
..|+.++|++.+-.... ++...|..-|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 77888887777765544 23334544454443
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.86 E-value=0.00039 Score=56.00 Aligned_cols=99 Identities=11% Similarity=0.014 Sum_probs=87.4
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
+.....++-..+...|++++|..+|+.+..-+ +-+..-|..|.-++-..|++++|+..|......+|.++.++..+..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 35566677778889999999999999999875 45667777888888899999999999999999999989999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 005161 94 YTRLSLYEKAEEVIRLIRED 113 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~ 113 (711)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999987664
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.85 E-value=0.00059 Score=58.43 Aligned_cols=112 Identities=15% Similarity=0.003 Sum_probs=55.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 53 FGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 53 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
+..+...+...|++++|...|+++.+..+.+ ...+..++.++.+.|++++|...+++.....+. +...+..+...+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 3344444444555555555555554433221 234445555555555555555555554443322 233333444444
Q ss_pred HhcCC--------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC
Q 005161 130 SQQGK--------------LEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSN 169 (711)
Q Consensus 130 ~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (711)
...|+ +++|.+++++..+.+ |+ .|..++..+...|+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--PN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--ch--hHHHHHHHHHhcCc
Confidence 44443 577888888877753 22 25555555544443
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.00024 Score=62.94 Aligned_cols=98 Identities=19% Similarity=0.147 Sum_probs=62.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCH
Q 005161 546 AAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFD-HYTYNIMIDIYGEQGWI 624 (711)
Q Consensus 546 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 624 (711)
.-..+.+++.+|+..|.+.++.. |.|...|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 34556677777777777776653 445555566666777777777777777766652 333 23666777777777777
Q ss_pred HHHHHHHHHHHHCCCCCChHhHHH
Q 005161 625 NEVVGVLTELKECGLRPDLCSYNT 648 (711)
Q Consensus 625 ~~A~~~~~~~~~~~~~p~~~~~~~ 648 (711)
++|++.|++.++ +.|+..+|..
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHH
Confidence 777777777766 5666555433
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.83 E-value=0.0098 Score=53.81 Aligned_cols=68 Identities=12% Similarity=0.029 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLE--NWLVMLNAYSQQGKLEEAELVLVSMREAGFS 151 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 151 (711)
...+......+...|++++|.+.|+.+....+.+... +...++.++.+.+++++|...+++.++..+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 3445566777788899999999999988866543221 2245677888899999999999999887543
No 168
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.82 E-value=0.031 Score=52.91 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=68.0
Q ss_pred HccCCHHHHHHHHHHHHHcCCCc------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhc
Q 005161 61 KKSWNVEEAEFAFNQMRKLGLVC------ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA--YSQQ 132 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ 132 (711)
-+++++.+|+++|.++.+..... +..-+.++++|..+ +.+.....+....+.... . .|..+..+ +-+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~-s--~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGK-S--AYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCC-c--hHHHHHHHHHHHHh
Confidence 46778888888888876544332 12234566666553 444444444444443221 1 23232222 3367
Q ss_pred CCHHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHhhccCChHHHHHHHHHHHhcCC----CCChhhHHH
Q 005161 133 GKLEEAELVLVSMREA--GFSP------------NIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGL----EPDETTYRS 194 (711)
Q Consensus 133 ~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ 194 (711)
+.+.+|.+.+..-.+. +..| |-..-+..+.++...|++.+++.+++++...-+ .-++.+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 7888887777766543 2111 111123344455556666666666655543322 234555554
Q ss_pred HHHHH
Q 005161 195 MIEGW 199 (711)
Q Consensus 195 li~~~ 199 (711)
++-.+
T Consensus 173 ~vlml 177 (549)
T PF07079_consen 173 AVLML 177 (549)
T ss_pred HHHHH
Confidence 44333
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.82 E-value=0.0067 Score=49.64 Aligned_cols=131 Identities=10% Similarity=0.000 Sum_probs=83.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHH
Q 005161 536 VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETS---CTFDHYTYN 612 (711)
Q Consensus 536 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~ 612 (711)
|+......+..+....|+..+|...|++...--+.-|......+.++....++...|...++.+.+.+ -.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 44445556677777777777777777777655455566666677777777777777777777776532 2233 233
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHH
Q 005161 613 IMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 670 (711)
.+...+...|+..+|...|+..++ ..|+...-......+.++|+.+++..-+..+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 455667777777777777777776 35665554445555666676666555444443
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.80 E-value=7e-05 Score=54.89 Aligned_cols=81 Identities=25% Similarity=0.237 Sum_probs=46.8
Q ss_pred cCChHHHHHHHHHHhHcCCC-CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 005161 28 RGCVELGAKWFHMMLECDVQ-PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEV 106 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 106 (711)
+|+++.|+.+|+.+++.... ++...+..+..+|.+.|++++|..+++. .+.++.+......++.++.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46666777777777665421 1334444466666677777777777766 433333334444556667777777777766
Q ss_pred HHH
Q 005161 107 IRL 109 (711)
Q Consensus 107 ~~~ 109 (711)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.79 E-value=0.00066 Score=65.62 Aligned_cols=92 Identities=12% Similarity=-0.059 Sum_probs=76.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005161 57 MGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLE 136 (711)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 136 (711)
...+...|+++.|+..|.++.+.+|.....|..+..+|...|++++|+..++.++..++. +...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 345567789999999999999888888888888888899999999999999888876654 5667778888888889999
Q ss_pred HHHHHHHHHHHcC
Q 005161 137 EAELVLVSMREAG 149 (711)
Q Consensus 137 ~a~~~~~~~~~~~ 149 (711)
+|...|++.++..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 9999888888864
No 172
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.78 E-value=0.00075 Score=62.77 Aligned_cols=129 Identities=15% Similarity=0.132 Sum_probs=56.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHH-HhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 471 LYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDI-YGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYG 549 (711)
Q Consensus 471 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (711)
+|..+++...+.+..+.|..+|.+..+.+ ..+...|...... |...++.+.|..+|+...+..+.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 34455555555555555555555555322 1112222222222 122334444555555555554444455555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 550 QNKNLESMSSTVQEMQFDGFSVSL---EAYNSMLDAYGKEGQMENFKNVLRRMKE 601 (711)
Q Consensus 550 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (711)
..++.+.|..+|++.... ++++. ..|...+..-.+.|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555554433 12111 2444444444444555555555444444
No 173
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.75 E-value=0.00083 Score=64.80 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 005161 118 NLENWLVMLNAYSQQGKLEEAELVLVSMREAG--FSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSM 195 (711)
Q Consensus 118 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 195 (711)
+.......+..+....+++.+..++-++.... ...-+.+..++++.|.+.|..+.+..++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 55556666777777777888888888777641 1122344568888888888888888888888888888899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcC
Q 005161 196 IEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKY 237 (711)
Q Consensus 196 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (711)
+..+.+.|++..|.++...|...+...++.|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 998889999988888888887776666666666656555544
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.74 E-value=0.0021 Score=64.98 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchH
Q 005161 605 TFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITY 681 (711)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 681 (711)
+.++..+..+.-.....|++++|...++++++. .|+...|..+..+|...|++++|.+.+++... +.|...+|
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 334556666666666678888888888888874 56777788888888888888888888888876 66765554
No 175
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.72 E-value=0.00079 Score=64.96 Aligned_cols=124 Identities=8% Similarity=0.022 Sum_probs=101.1
Q ss_pred CCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC---CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 005161 498 HGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL---VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLE 574 (711)
Q Consensus 498 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 574 (711)
.+.+.+...+..+++.+....+.+.+..++.+.+.... .-+.+..++++.|...|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 44566777888888888888889999998888877643 245566789999999999999999999988899999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 005161 575 AYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQ 621 (711)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 621 (711)
+++.+++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998887666666777776666666555
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.72 E-value=0.04 Score=51.11 Aligned_cols=294 Identities=13% Similarity=0.065 Sum_probs=172.1
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHH--HHHH
Q 005161 86 AYSAMITIYT--RLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAY--SQQGKLEEAELVLVSMREAGFSPNIV--AYNT 159 (711)
Q Consensus 86 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ 159 (711)
.|..|..++. -.|+-..|.+.-.+..+. +..|...+..++.+- .-.|+++.|.+-|+.|... |... ....
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 4555554443 446777777766654321 223444455555433 3469999999999999873 3322 2223
Q ss_pred HHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCccHhh--HHHHHHH---
Q 005161 160 LMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLG-YKPNASN--LYTLINL--- 233 (711)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~~l~~~--- 233 (711)
|.-.--+.|+.+.|.+.-++.-.... .-...+...+...+..|+++.|+++++.-++.. +.++..- -..|+.+
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 33333467888888888887766432 234567788888999999999999998776542 3333221 1122221
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHH
Q 005161 234 HAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAM 313 (711)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 313 (711)
-.-.-|...|...-.+..+..+.-.+....-...+.+.|+..++-++++.+-...|+|+.. ..|.....-+.++
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~lY~~ar~gdta~ 312 (531)
T COG3898 239 SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LLYVRARSGDTAL 312 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HHHHHhcCCCcHH
Confidence 1122356677777777777666666666777788888888888888888888877776632 2333322223333
Q ss_pred HHHHhhhhc-CCCc-cHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHH-ccCCHHHHHHHHHHHH
Q 005161 314 KVLGDKRWK-DTVF-EDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYS-VMGMFTEAEKLYLNLK 390 (711)
Q Consensus 314 ~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 390 (711)
+-+++.... ..+| +..+...+..+....|++..|..--+..... .|....|..|.+.-. ..||-.++...+.+..
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 333322211 1122 2234445555666666666666555555442 455666666655543 3366666666666665
Q ss_pred hC
Q 005161 391 SS 392 (711)
Q Consensus 391 ~~ 392 (711)
+.
T Consensus 391 ~A 392 (531)
T COG3898 391 KA 392 (531)
T ss_pred cC
Confidence 54
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.72 E-value=0.0013 Score=56.12 Aligned_cols=97 Identities=15% Similarity=-0.094 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN 127 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (711)
..|..+...+...|++++|+..|+.+....+.+ ..++..+..+|...|++++|+..++......+. ...++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 334444444555566666666666655443322 235555566666666666666666655543322 2233434444
Q ss_pred HHH-------hcCCHH-------HHHHHHHHHHHc
Q 005161 128 AYS-------QQGKLE-------EAELVLVSMREA 148 (711)
Q Consensus 128 ~~~-------~~~~~~-------~a~~~~~~~~~~ 148 (711)
.+. ..|+++ +|..++++....
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~ 149 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIAL 149 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHh
Confidence 444 444433 556666666554
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.71 E-value=0.00083 Score=62.45 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHH
Q 005161 137 EAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDE----TTYRSMIEGWGRAGNYREAKWYY 212 (711)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~ 212 (711)
.|..+|+...+. ++.+...|...+..+.+.++.+.|+.+|++.... + +.. ..|...+..=.+.|+.+....+.
T Consensus 54 ~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 54 RARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344444444433 2334444444444444444444444444444332 1 111 23444444444444444444444
Q ss_pred HHHHh
Q 005161 213 KELKH 217 (711)
Q Consensus 213 ~~~~~ 217 (711)
+++.+
T Consensus 131 ~R~~~ 135 (280)
T PF05843_consen 131 KRAEE 135 (280)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 179
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.70 E-value=0.0069 Score=53.37 Aligned_cols=59 Identities=15% Similarity=-0.049 Sum_probs=37.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005161 57 MGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKV 115 (711)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 115 (711)
...+...|++.+|...|+.+....|.+ ..+...++.++.+.|+++.|...++.+....+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 334456677777777777777766654 45666777777777777777777777666543
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.68 E-value=0.00091 Score=57.07 Aligned_cols=111 Identities=11% Similarity=-0.111 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005161 68 EAEFAFNQMRKLGLVC--ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVP--NLENWLVMLNAYSQQGKLEEAELVLV 143 (711)
Q Consensus 68 ~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 143 (711)
.+...+..+.+..... ...|..++..+...|++++|+..|+........+ ...++..+...+...|++++|...++
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444443333332 4567788888888899999999998887654332 23467788888888999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHhh-------ccCChHHHHHHHHH
Q 005161 144 SMREAGFSPNIVAYNTLMTGYG-------KVSNMEAAQRLFLS 179 (711)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~ 179 (711)
...+.. +.....++.+...+. ..|+++.|...+++
T Consensus 97 ~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 97 QALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 888763 334555666666666 77787765555543
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.68 E-value=0.00017 Score=50.33 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=35.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
+.|++++|.+.|+.+...+|.+..++..++.+|.+.|++++|.++++.+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45667777777777776666666666667777777777777777776666544
No 182
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.66 E-value=0.0026 Score=54.51 Aligned_cols=115 Identities=17% Similarity=0.073 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPN--LENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLM 161 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (711)
...+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34567777777778888888888887765443322 3566677777777888888888888777753 23455566666
Q ss_pred HHhhccCC--------------hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 005161 162 TGYGKVSN--------------MEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAG 203 (711)
Q Consensus 162 ~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 203 (711)
.++...|+ +++|.+.+++....+ |+ .|..++.-+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p~--~~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--PN--NYIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--ch--hHHHHHHHHHhcC
Confidence 66666665 567777777777632 22 2444444444433
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.66 E-value=0.0002 Score=49.41 Aligned_cols=58 Identities=19% Similarity=0.051 Sum_probs=36.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 57 MGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
...+.+.|++++|...|+.+.+..|.+..++..+..++...|++++|...|+.+.+..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3455566666666666666666666666666666666666666666666666665543
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.65 E-value=0.00025 Score=49.65 Aligned_cols=65 Identities=25% Similarity=0.180 Sum_probs=46.2
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhC
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS-LYEKAEEVIRLIRED 113 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 113 (711)
+...|..+...+...|++++|+..|.+..+.+|....+|..+..+|...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34566666777777777777777777777777776777777777777777 577777777766553
No 185
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0035 Score=56.23 Aligned_cols=131 Identities=18% Similarity=0.050 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHH
Q 005161 65 NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQ---GKLEEAELV 141 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~ 141 (711)
+++....-++.-...+|.+...|..|..+|...|++..|...|....+.... |+..+..+..++... ..-.++.++
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 3555555666677788988999999999999999999999999998776543 666776766666543 335678899
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 005161 142 LVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGW 199 (711)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 199 (711)
|+++++.+ +.|+.+...|...+...|++.+|...|+.|.+.. |....+..+|...
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~~ 270 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIERS 270 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHHH
Confidence 99999875 3467777777788899999999999999999864 4555666666543
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.038 Score=48.23 Aligned_cols=223 Identities=10% Similarity=0.031 Sum_probs=122.3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc------------------hhH-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC------------------ESA-YSAMITIYTRLSLYEKAEEVIRLIR 111 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------------~~~-~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (711)
..|...+.++.+....++|..-+....+.+.++ +.+ ...-..+....|+..+.+.-+..++
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 345556777888888888887777665544321 000 1111223333444444443333322
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhh
Q 005161 112 EDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETT 191 (711)
Q Consensus 112 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 191 (711)
. ....++..+-.....+.-.+.|+.=. ..+.+.++..+.-.|.+.-...++.++.+...+.++..
T Consensus 150 ~--------~V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 150 T--------VVSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred H--------HHHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 1 01112222222222234444444322 23556677777777888888888888888776667777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHH-----HHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHH
Q 005161 192 YRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLY-----TLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQ 266 (711)
Q Consensus 192 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 266 (711)
...|.+.-.+.|+.+.|..+|++..+..-..+..+++ .....+.-.+++..|...+.+++..++......+.-+-
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL 294 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL 294 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence 7788888888888888888888766543233333332 23334455566666666666666666555444444444
Q ss_pred HHHhcCCCCcHHHHHHHhhhcc
Q 005161 267 AYEKAGRTDNVPRILKGSLYQH 288 (711)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~~~~~ 288 (711)
++...|+..+|.+.++.+....
T Consensus 295 cllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 295 CLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 4444455555555555444443
No 187
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.62 E-value=8.9e-05 Score=41.86 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHhCc
Q 005161 680 TYTNMITALQRNDKFLEAIKWSLWMKQIGL 709 (711)
Q Consensus 680 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 709 (711)
+|+.++++|.+.|++++|.+++++|++.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 455555666666666666666666655553
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.62 E-value=0.0046 Score=57.89 Aligned_cols=133 Identities=18% Similarity=0.217 Sum_probs=61.6
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCC---C--CHhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCc--
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQ---P--NVATFGMLMGLYKKSWNVEEAEFAFNQMRKL----GLVC-- 83 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-- 83 (711)
...|..-...|-..|++++|.+.|..+.+.... + -...|.....+| +.+++++|...+.+..+. |-..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 334555555566667777777776665442111 0 111222223333 333666666666655432 1111
Q ss_pred hhHHHHHHHHHHhc-CCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005161 84 ESAYSAMITIYTRL-SLYEKAEEVIRLIRE----DKV-VPNLENWLVMLNAYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 84 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 148 (711)
...+..+..+|... |++++|++.|++..+ .+. ..-..++..++..+.+.|++++|.++|+++...
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 23455555555555 566666666655433 110 001223445555555666666666666655543
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.61 E-value=0.00089 Score=49.70 Aligned_cols=77 Identities=16% Similarity=0.296 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccC--------ChHHHHHHHHHHHhcCCCCChhhHHH
Q 005161 124 VMLNAYSQQGKLEEAELVLVSMREAGF-SPNIVAYNTLMTGYGKVS--------NMEAAQRLFLSIKDVGLEPDETTYRS 194 (711)
Q Consensus 124 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (711)
..|..+...+++...--+|+.+.+.|+ -|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555666666666666666666 566666666666554332 23334455555555555555555555
Q ss_pred HHHHHH
Q 005161 195 MIEGWG 200 (711)
Q Consensus 195 li~~~~ 200 (711)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.60 E-value=0.0033 Score=48.91 Aligned_cols=90 Identities=18% Similarity=0.113 Sum_probs=52.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcc--HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC---ChhHHHHHHHHHHh
Q 005161 196 IEGWGRAGNYREAKWYYKELKHLGYKPN--ASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ---HSSILGTLLQAYEK 270 (711)
Q Consensus 196 i~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 270 (711)
..++-..|+.++|..+|++....|.... ...+..+...+...|++++|..++++.....|. +..+..-+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 4445566777777777777777665543 234555556666667777777777766665554 22333334445555
Q ss_pred cCCCCcHHHHHHHhh
Q 005161 271 AGRTDNVPRILKGSL 285 (711)
Q Consensus 271 ~~~~~~a~~~~~~~~ 285 (711)
.|+.++|.+.+-..+
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 566666655554433
No 191
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.60 E-value=0.0014 Score=48.73 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=53.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCCC-CCChHhHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCCCcchHHH
Q 005161 613 IMIDIYGEQGWINEVVGVLTELKECGL-RPDLCSYNTLIKAYGIAG--------MVEDAVGLVKEMRENGIEPDKITYTN 683 (711)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~ 683 (711)
..|..|...+++.....+|+.++..|+ .|+..+|+.++.+..+.. +.-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555777777777777777777 677777777776665432 13345677788887778888888888
Q ss_pred HHHHHHh
Q 005161 684 MITALQR 690 (711)
Q Consensus 684 l~~~~~~ 690 (711)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7777654
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0062 Score=54.69 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc---CChHHHHHHH
Q 005161 101 EKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV---SNMEAAQRLF 177 (711)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~ 177 (711)
+....-++.-+..++. |...|..+...|.+.|+++.|..-|....+.. ++++..+..+..++... ....++..+|
T Consensus 139 ~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 139 EALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3333445555566655 78899999999999999999999999999874 45777777777766433 3577889999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005161 178 LSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLG 219 (711)
Q Consensus 178 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 219 (711)
+++..... -++.+...|...+...|++.+|...++.|.+..
T Consensus 217 ~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 217 RQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 99998653 566777778888999999999999999999873
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.58 E-value=0.013 Score=51.58 Aligned_cols=156 Identities=16% Similarity=0.096 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV--PNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLM 161 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (711)
...+...+..+...|++.+|.+.|+.+....+. ....+...++.++.+.|+++.|...++++++.-+.....-+...+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 456667778888999999999999999876433 123556678888999999999999999998874332222222222
Q ss_pred HHhhcc-------------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHH
Q 005161 162 TGYGKV-------------SNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLY 228 (711)
Q Consensus 162 ~~~~~~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 228 (711)
.+.+.. +...+|... +..++.-|-......+|...+..+.+. =...-.
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~ 145 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHEL 145 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHH
Confidence 222111 111122222 334444444444555555555444332 011122
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCh
Q 005161 229 TLINLHAKYEDEEGAVNTLDDMLNMGCQHS 258 (711)
Q Consensus 229 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 258 (711)
.+...|.+.|.+..|..-++.+++.-|...
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~ 175 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTP 175 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence 356677777788878777777777766554
No 194
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.58 E-value=0.00011 Score=41.50 Aligned_cols=29 Identities=34% Similarity=0.705 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005161 191 TYRSMIEGWGRAGNYREAKWYYKELKHLG 219 (711)
Q Consensus 191 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 219 (711)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665544
No 195
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.57 E-value=0.0058 Score=61.92 Aligned_cols=144 Identities=12% Similarity=0.082 Sum_probs=98.5
Q ss_pred CCccHHHHHHHHHHHhc-----cCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC--------CHHHHHHHHHHHHH
Q 005161 500 FTPNIITLNVMLDIYGK-----AKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNK--------NLESMSSTVQEMQF 566 (711)
Q Consensus 500 ~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~ 566 (711)
.+.+...|...+.+... .++.+.|..+|+++.+..|.....+..+..++.... +...+.+...+...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 35556666666655322 233667888888888888777777766655543321 12233333333333
Q ss_pred C-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHh
Q 005161 567 D-GFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCS 645 (711)
Q Consensus 567 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 645 (711)
. ..+.+...|..+.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++... +.|...+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 2 23445567777766677789999999999999985 47888899999999999999999999999987 5676555
Q ss_pred HH
Q 005161 646 YN 647 (711)
Q Consensus 646 ~~ 647 (711)
|.
T Consensus 489 ~~ 490 (517)
T PRK10153 489 LY 490 (517)
T ss_pred HH
Confidence 43
No 196
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.0095 Score=55.81 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcc-CChHHHHHHHHHHHhc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----ccH
Q 005161 156 AYNTLMTGYGKV-SNMEAAQRLFLSIKDV----GL-EPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYK-----PNA 224 (711)
Q Consensus 156 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~ 224 (711)
.+..+...|-.. |+++.|.+.|++..+. +- ..-...+..+...+.+.|++++|.++|++....... .+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455566666 7788888777766442 10 001223456667777888888888888877654322 112
Q ss_pred h-hHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005161 225 S-NLYTLINLHAKYEDEEGAVNTLDDMLNMGC 255 (711)
Q Consensus 225 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (711)
. .+...+-++...||...|...++......|
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1 233344456667788888888887776654
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.55 E-value=0.00036 Score=48.84 Aligned_cols=59 Identities=24% Similarity=0.241 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccC-ChHHHHHHHHHHH
Q 005161 610 TYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAG-MVEDAVGLVKEMR 670 (711)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 670 (711)
.|..+...+...|++++|+..|++.++. .|+ ...|..+..+|...| ++++|++.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444444444444444444444444442 232 334444444444444 3444444444443
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.53 E-value=0.00031 Score=48.99 Aligned_cols=64 Identities=17% Similarity=0.068 Sum_probs=53.5
Q ss_pred HHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHH
Q 005161 25 CNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSA 89 (711)
Q Consensus 25 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 89 (711)
+...|++++|.+.|+.+++.. +.+...+..+..+|.+.|++++|..+++++...+|.++..+..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 357899999999999999886 5588888889999999999999999999999999875444433
No 199
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.51 E-value=0.092 Score=49.80 Aligned_cols=142 Identities=8% Similarity=0.089 Sum_probs=93.6
Q ss_pred HHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 005161 38 FHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVP 117 (711)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 117 (711)
+++=++.+ +.|+..|-.|+.-|-.+|..++-.++++.+...-|..+.+|...+.+-...+++.....+|.+.+.....
T Consensus 31 LRerIkdN-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 31 LRERIKDN-PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHhhcC-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 33333433 7789999999999999999999999999998888777889999999888899999999999988776544
Q ss_pred CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHH-cCCCC-CHHHHHHHHHHhh---------ccCChHHHHHHHHHH
Q 005161 118 NLENWLVMLNAYSQQGK------LEEAELVLVSMRE-AGFSP-NIVAYNTLMTGYG---------KVSNMEAAQRLFLSI 180 (711)
Q Consensus 118 ~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~-~~~~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~ 180 (711)
...|...++--.+.+. -....+.++-.+. .+++| +...|+..+..+- .+.+.+..++.|.++
T Consensus 109 -ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 109 -LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred -HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 4455555543333221 1112344444333 33443 3445555554321 123455666677777
Q ss_pred Hh
Q 005161 181 KD 182 (711)
Q Consensus 181 ~~ 182 (711)
..
T Consensus 188 l~ 189 (660)
T COG5107 188 LQ 189 (660)
T ss_pred Hc
Confidence 65
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.43 E-value=0.00073 Score=46.53 Aligned_cols=62 Identities=18% Similarity=0.112 Sum_probs=53.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 005161 21 LIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC 83 (711)
Q Consensus 21 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 83 (711)
+...+.+.|++++|...|+.+++.. +-+...+..+..++...|++++|...|+.+.+.+|.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4567889999999999999999986 5578888889999999999999999999999988764
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.42 E-value=0.0012 Score=61.00 Aligned_cols=234 Identities=17% Similarity=0.094 Sum_probs=126.4
Q ss_pred hHhHHHHH--HHHHhcCChHHHHHHHHHHhHcCCCCCH----hhHHHHHHHHHccCCHHHHHHHHHHHH--HcCCC----
Q 005161 15 FQLFNTLI--YACNKRGCVELGAKWFHMMLECDVQPNV----ATFGMLMGLYKKSWNVEEAEFAFNQMR--KLGLV---- 82 (711)
Q Consensus 15 ~~~~~~~l--~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~---- 82 (711)
.+.+.--+ .-+|+.|+....+.+|+.+++.|. .|. ..|..|.++|.-.++++.|++....=. .+...
T Consensus 15 ~SCleLalEGERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG 93 (639)
T KOG1130|consen 15 RSCLELALEGERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG 93 (639)
T ss_pred hHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc
Confidence 34444444 358899999999999999999873 333 345566677777788999988765321 11111
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCC--------------------HHH
Q 005161 83 CESAYSAMITIYTRLSLYEKAEEVIRLIRE----DK-VVPNLENWLVMLNAYSQQGK--------------------LEE 137 (711)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~--------------------~~~ 137 (711)
...+-..|.+.+--.|.+++|+....+-+. .| ......++..+...|...|+ ++.
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 134556677888888999999877665432 11 11123445556666655443 233
Q ss_pred HHHHHHHHHHc----CC-CCCHHHHHHHHHHhhccCChHHHHHHHHHH----HhcCCC-CChhhHHHHHHHHHhcCCHHH
Q 005161 138 AELVLVSMREA----GF-SPNIVAYNTLMTGYGKVSNMEAAQRLFLSI----KDVGLE-PDETTYRSMIEGWGRAGNYRE 207 (711)
Q Consensus 138 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~li~~~~~~g~~~~ 207 (711)
|.+.|++=++. |- -.-...|..|...|.-.|+++.|...-+.- .+.|-. .....+..+..+++-.|+++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 34444332221 10 001123444555555567777776554331 122211 122345566667777777777
Q ss_pred HHHHHHHHHhcCCC-----ccHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 005161 208 AKWYYKELKHLGYK-----PNASNLYTLINLHAKYEDEEGAVNTLDD 249 (711)
Q Consensus 208 A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 249 (711)
|.+.|+......++ .......++...|.-..+++.|+..+.+
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 77777655432111 1122233444444444455555554443
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.40 E-value=0.0059 Score=51.88 Aligned_cols=104 Identities=16% Similarity=0.286 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhh
Q 005161 117 PNLENWLVMLNAYSQ-----QGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETT 191 (711)
Q Consensus 117 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 191 (711)
.+..+|..+++.+.+ .|.++-....+..|.+.|+..|..+|+.|++++=+ |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 366677777777764 36677777778888888888888888888887644 2211 11111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCC
Q 005161 192 YRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYED 239 (711)
Q Consensus 192 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (711)
--.| -.+.+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 112 ----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1011 12345577777888888888888888777777766653
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.37 E-value=0.0046 Score=56.30 Aligned_cols=97 Identities=10% Similarity=0.035 Sum_probs=57.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV--PNLENWLVML 126 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 126 (711)
.|...+..+.+.|++++|...|+.+.+..|.+ ..++..++..|...|++++|...|+.+....+. ....++..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 33343444445566777777777776666654 346666666667777777777777666643321 1233444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 005161 127 NAYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~ 148 (711)
..+...|+.++|..+++.+++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5565666666666666666665
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.37 E-value=0.0025 Score=59.02 Aligned_cols=52 Identities=10% Similarity=0.082 Sum_probs=35.6
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCC--CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005161 406 RMYVKAGSLKDACAVLETMEKQKD--IEPDAYLYCDMLRIYQQCGMLDKLSYLY 457 (711)
Q Consensus 406 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 457 (711)
.-+++.|+....+.+|+..++... +..-+..|+.+.++|.-.+++++|+++.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 347788888888888888754321 1222455777777777788888887764
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.32 E-value=0.0061 Score=55.52 Aligned_cols=102 Identities=13% Similarity=-0.019 Sum_probs=82.4
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPN--VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSA 89 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~ 89 (711)
...|..-+..+.+.|++++|...|+.+++..+... ...+.-+..+|...|++++|...|..+.+..|.+ ..++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34455555555778999999999999998742211 3567778889999999999999999999877764 577888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005161 90 MITIYTRLSLYEKAEEVIRLIREDKVV 116 (711)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 116 (711)
++.++...|+.++|...|+.+....+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 889999999999999999999886644
No 206
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.30 E-value=0.0084 Score=50.98 Aligned_cols=105 Identities=13% Similarity=0.284 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHhhc-----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhh
Q 005161 152 PNIVAYNTLMTGYGK-----VSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASN 226 (711)
Q Consensus 152 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 226 (711)
.+-.+|..++..|.+ .|.++=....+..|.+.|+..|..+|+.|++.+-+ |.+- -..+|+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ------------- 109 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ------------- 109 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-------------
Confidence 466777777776653 47888888889999999999999999999988764 3321 111111
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh-hHHHHHHHHHHhcCCCC
Q 005161 227 LYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS-SILGTLLQAYEKAGRTD 275 (711)
Q Consensus 227 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 275 (711)
.+.. -...+-+-|+.++++|...|.-|+ ++...+++.+.+.+..-
T Consensus 110 --~~F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 110 --AEFM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred --HHhc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 1111 112355778999999999999988 88999999988877643
No 207
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.28 E-value=0.24 Score=49.33 Aligned_cols=119 Identities=11% Similarity=0.061 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHH-hcCCHHHHHHH
Q 005161 237 YEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYV-KHGLIDDAMKV 315 (711)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~ 315 (711)
..+.+.+...+..++..-|-....+...+..-.+.|..+.+.++|++.+..-+ .....|........ ..|+.+...+.
T Consensus 58 ~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip-~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 58 IEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP-LSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred hhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 33445566666667666666667777777777788888888888887776544 36666666555444 35666666667
Q ss_pred HHhhhhc-CCC-ccHhhHHHHHHHHHccCChhhHHHHHHHHhh
Q 005161 316 LGDKRWK-DTV-FEDNLYHLLICSCKDSGHLANAVKIYSHMHI 356 (711)
Q Consensus 316 ~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 356 (711)
|+..... |.. .+...|...|.--..++++.....++++.++
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 7665443 211 1223466666666666777777777777765
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=97.27 E-value=0.014 Score=47.53 Aligned_cols=89 Identities=10% Similarity=0.008 Sum_probs=73.5
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005161 59 LYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEA 138 (711)
Q Consensus 59 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 138 (711)
-+-..|++++|..+|.-+.-.++.+..-|..|..++...+++++|+..|......++. |+.+.-....++...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 3457899999999999999988888888899999999999999999999876554432 444555778888899999999
Q ss_pred HHHHHHHHHc
Q 005161 139 ELVLVSMREA 148 (711)
Q Consensus 139 ~~~~~~~~~~ 148 (711)
...|+..+..
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 9999998884
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.26 E-value=0.17 Score=47.21 Aligned_cols=151 Identities=13% Similarity=-0.018 Sum_probs=96.0
Q ss_pred cHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 519 LFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRR 598 (711)
Q Consensus 519 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (711)
+...|...-.+..+..+.-...-..-..++.+.|+..++..+++.+.+....| ..+... .+.+.|+ .+..-+++
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~lY--~~ar~gd--ta~dRlkR 317 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIALLY--VRARSGD--TALDRLKR 317 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHHHH--HHhcCCC--cHHHHHHH
Confidence 45666666666666655444555556677888888889989998888874333 333222 2334444 33333333
Q ss_pred HHHc-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHh-ccCChHHHHHHHHHHHHcCCC
Q 005161 599 MKET-SCTFD-HYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYG-IAGMVEDAVGLVKEMRENGIE 675 (711)
Q Consensus 599 ~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~ 675 (711)
..+. ..+|+ ..+...+..+-...|++..|..--+.... ..|....|-.|...-. ..|+-.++...+-+..+..-.
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 3221 13444 44555666777778888888777776665 4788778877777655 458888888888888765555
Q ss_pred CC
Q 005161 676 PD 677 (711)
Q Consensus 676 p~ 677 (711)
|.
T Consensus 396 Pa 397 (531)
T COG3898 396 PA 397 (531)
T ss_pred Cc
Confidence 54
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.24 E-value=0.0022 Score=45.39 Aligned_cols=57 Identities=19% Similarity=0.096 Sum_probs=37.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 58 GLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
.+|.+.++++.|.++++.+...+|.+...|.....++.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 455666666666666666666666666666666666666666666666666666544
No 211
>PRK15331 chaperone protein SicA; Provisional
Probab=97.19 E-value=0.0036 Score=50.82 Aligned_cols=94 Identities=9% Similarity=-0.048 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 005161 87 YSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK 166 (711)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (711)
......-+-..|++++|..+|+-+.--++. +..-+..+..++-..+++++|...+......+. .|+........++..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHH
Confidence 344455566778888888888876655543 555566677777777888888888877665542 344445556677777
Q ss_pred cCChHHHHHHHHHHHh
Q 005161 167 VSNMEAAQRLFLSIKD 182 (711)
Q Consensus 167 ~~~~~~a~~~~~~~~~ 182 (711)
.|+.+.|+..|+....
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 8888888888887776
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.16 Score=44.49 Aligned_cols=140 Identities=11% Similarity=0.040 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----
Q 005161 540 SYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMI---- 615 (711)
Q Consensus 540 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~---- 615 (711)
..+.++..+...|.+.-....+.+.++...+.++.....+++.-.+.||.+.|...|+...+.....+..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4455666666777777777788888877666677777888888888888888888888776543344444443333
Q ss_pred -HHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHH
Q 005161 616 -DIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYT 682 (711)
Q Consensus 616 -~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 682 (711)
..|.-++++..|...++++.... .-++...|.-+-+..-.|+..+|++.++.|.+ ..|...+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 34555677888888888877642 22455556666666677888888888888887 566554433
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.11 E-value=0.024 Score=46.95 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=45.9
Q ss_pred chHhHHHHHHH---HHhcCChHHHHHHHHHHhHc--C-CCCCHhh--H----------------HHHHHHHHccCCHHHH
Q 005161 14 NFQLFNTLIYA---CNKRGCVELGAKWFHMMLEC--D-VQPNVAT--F----------------GMLMGLYKKSWNVEEA 69 (711)
Q Consensus 14 ~~~~~~~~l~~---~~~~~~~~~a~~~~~~~~~~--~-~~~~~~~--~----------------~~l~~~~~~~g~~~~A 69 (711)
|...|..+++. ....|+...+...++.++.. | +-|+... | ..++..+...|+++.|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 45566666543 35678888888888888763 2 1122111 1 1222333334444444
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 70 EFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRL 109 (711)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 109 (711)
..+...+...+|.+...|..++.+|...|+..+|.+.|+.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.09 E-value=0.12 Score=51.30 Aligned_cols=91 Identities=12% Similarity=0.062 Sum_probs=61.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------
Q 005161 536 VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHY------ 609 (711)
Q Consensus 536 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------ 609 (711)
.+..+...+...+.+...+.-|.++|..|-+. .++++.....++|.+|..+-++..+ +.||..
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQW 813 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHH
Confidence 45555555555566666677777777776443 3566777788888888888888776 344433
Q ss_pred -----HHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 005161 610 -----TYNIMIDIYGEQGWINEVVGVLTELKEC 637 (711)
Q Consensus 610 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (711)
-|...-.+|.++|+-.+|..+++++...
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2334456778888888888888887653
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.07 E-value=0.093 Score=49.92 Aligned_cols=163 Identities=15% Similarity=0.055 Sum_probs=98.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCC----CchhHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 005161 507 LNVMLDIYGKAKLFKRVRKLFSMAKKLGL----VDVISYNTIIAAYGQ---NKNLESMSSTVQEMQFDGFSVSLEAYNSM 579 (711)
Q Consensus 507 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 579 (711)
...++-+|....+++...++.+.+..... ..+..-...+.++-+ .|+.++|+.++..+....-.+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 33455568888889988888888877632 234444455566666 78888899888886666567888888888
Q ss_pred HHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC-HH---HHHHHH---HHHH-HCCCCC-
Q 005161 580 LDAYGKE---------GQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGW-IN---EVVGVL---TELK-ECGLRP- 641 (711)
Q Consensus 580 ~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~~-~~~~~p- 641 (711)
...|-.. ...++|...+.+.-+. .|+..+=-.+...+...|. .+ +..++- ..+. +.|...
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 7766321 2356677777666553 3554422222222333332 22 222332 1111 233222
Q ss_pred --ChHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 642 --DLCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 642 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
+--.+.+++.++.-.|++++|.+.+++|..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 223446677888888888888888888886
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.06 E-value=0.0045 Score=43.82 Aligned_cols=64 Identities=14% Similarity=-0.074 Sum_probs=56.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESA 86 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 86 (711)
-..|.+.++++.|.++++.+++.+ +.+...+.....++.+.|++++|...|+.+.+.+|.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 357889999999999999999986 5678888889999999999999999999999999876443
No 217
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.98 E-value=0.47 Score=47.35 Aligned_cols=98 Identities=11% Similarity=0.089 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 329 NLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMY 408 (711)
Q Consensus 329 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 408 (711)
.+|...+..-...|+.+.+.-+|++..-. +..-...|-..+......|+.+.+..++....+--.+..+.+-..-....
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 45666666667777777777777776431 11223344445555555577777766665554432222222211111122
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 005161 409 VKAGSLKDACAVLETMEKQ 427 (711)
Q Consensus 409 ~~~~~~~~A~~~~~~~~~~ 427 (711)
-..|++..|..+++.+..+
T Consensus 377 e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HhhccHHHHHHHHHHHHhh
Confidence 2346777777777777544
No 218
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.98 E-value=0.34 Score=45.77 Aligned_cols=111 Identities=17% Similarity=0.143 Sum_probs=77.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 005161 506 TLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGK 585 (711)
Q Consensus 506 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 585 (711)
+.+..+.-+...|+...|.++-.. ..+|+..-|...+.+++..++|++...+... .-++.-|..++.+|.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~---Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKE---FKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHH---cCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 344445556677887777776543 3457888888888888888888877765432 2345778888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 005161 586 EGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELK 635 (711)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (711)
.|+..+|..++.++. +..-+..|.+.|++.+|.+.--+..
T Consensus 250 ~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 888888888877721 1345677788888888877655443
No 219
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.64 Score=48.28 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 005161 124 VMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTL----MTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGW 199 (711)
Q Consensus 124 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 199 (711)
..+..+.+...++-|..+-+. .+. +..+...+ ...+.+.|++++|...|-+-... ++| ..+|.-|
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 345555555555555544332 211 22222222 23334556666666655544321 112 1234444
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHH
Q 005161 200 GRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAV 244 (711)
Q Consensus 200 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 244 (711)
........-..+++.+.+.|+. +...-..|+.+|.+.++.+...
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 4444555555555555555543 3333344555666666655433
No 220
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.18 Score=45.45 Aligned_cols=142 Identities=13% Similarity=0.035 Sum_probs=85.8
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005161 60 YKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAE 139 (711)
Q Consensus 60 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 139 (711)
....|++.+|..+|+......+.+..+...++.+|...|+.+.|..++..+..............-+..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 45677888888888888877777777777788888888888888888877655432222222233455555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcC
Q 005161 140 LVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVG-LEPDETTYRSMIEGWGRAG 203 (711)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g 203 (711)
.+-.+.-.. +.|...-..+...+...|+.+.|.+.+-.+.+.+ -..|...-..++..+.-.|
T Consensus 224 ~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 555555543 2366666666777777777777776655554421 1123334444444444333
No 221
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.84 E-value=0.31 Score=43.13 Aligned_cols=53 Identities=21% Similarity=0.079 Sum_probs=29.7
Q ss_pred ccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
+.|++++|...|+.+....|.+ ..+...++.++-+.+++++|+..+++.....
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 4566666666666666555543 3445555555556666666665555555443
No 222
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.78 E-value=0.26 Score=49.18 Aligned_cols=87 Identities=9% Similarity=0.092 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcch---------
Q 005161 610 TYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKIT--------- 680 (711)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--------- 680 (711)
+...+...+.+...+.-|-++|.+|-+ ...++......++|.+|..+.++..+ +.||...
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhh
Confidence 333333334444445556666665533 12345555666677777666666554 4444311
Q ss_pred --HHHHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 681 --YTNMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 681 --~~~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
+.-.-++|.++|+..||..+++.+...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 222334566777777777777776554
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.78 E-value=0.0026 Score=45.77 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=35.5
Q ss_pred HhHHHHHHHHhccCChHHHHHHHHHHHHc--CCCC---C-cchHHHHHHHHHhcchHHHHHHHHHHHH
Q 005161 644 CSYNTLIKAYGIAGMVEDAVGLVKEMREN--GIEP---D-KITYTNMITALQRNDKFLEAIKWSLWMK 705 (711)
Q Consensus 644 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p---~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 705 (711)
.+|+.+..+|...|++++|+..+++..+. ...+ + ..++..+..++...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666666666666666666665531 0111 1 3455666666666666666666666554
No 224
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.86 Score=47.39 Aligned_cols=46 Identities=11% Similarity=0.217 Sum_probs=24.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005161 404 VVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLS 454 (711)
Q Consensus 404 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 454 (711)
++..+.+..+++.+..+.+...+ .++..|..++..+.+.+.++...
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~-----~~p~l~~~~L~yF~~~~~i~~~~ 756 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK-----EDPSLWLHALKYFVSEESIEDCY 756 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc-----cChHHHHHHHHHHhhhcchhhHH
Confidence 44445555666666666655521 14555666666666665444433
No 225
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.77 E-value=0.044 Score=48.74 Aligned_cols=96 Identities=22% Similarity=0.162 Sum_probs=71.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHH
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV-P-NLENWLVML 126 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~ 126 (711)
.|+.-+.. .+.|++..|...|....+..|.+ ..++..|...+...|++++|...|..+.+..+. | -+.++..+.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655554 36677888888888888877765 567888888888888888888888877765432 1 235666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 005161 127 NAYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~ 148 (711)
.+..+.|+-++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777888888888888888876
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.84 Score=46.80 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=79.1
Q ss_pred CCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005161 323 DTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFT 402 (711)
Q Consensus 323 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 402 (711)
+.....-+.+..+.-+...|+..+|.++-.+.. -||...|-.-+.++...+++++-+++-+... ++.-|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCch
Confidence 334445567777777778888888888877775 5777788888888888888876665443322 355677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005161 403 VVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYL 456 (711)
Q Consensus 403 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 456 (711)
..+..|.+.|+.++|..++-+.. +.. -...+|.+.|++.+|.++
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~------~l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVG------GLQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccC------ChH----HHHHHHHHhccHHHHHHH
Confidence 78888888888888888887661 111 455667777777776654
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.69 E-value=0.56 Score=44.84 Aligned_cols=168 Identities=5% Similarity=-0.061 Sum_probs=106.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC---CCccHHHHHHHHHHHhc---cCcHHHHHHHHHH-HHHcCCCchhH
Q 005161 468 NQELYDCVINCCARALPIDELSRVFDEMLQHG---FTPNIITLNVMLDIYGK---AKLFKRVRKLFSM-AKKLGLVDVIS 540 (711)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~-~~~~~~~~~~~ 540 (711)
+..+...++-+|....+++..+++.+.+.... +......-....-++.+ .|+.++|.+++.. +.....+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34444556667889999999999999988641 11122222334445666 8999999999988 55555688999
Q ss_pred HHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH----HHHHHHHH---H-HHHcC
Q 005161 541 YNTIIAAYGQ---------NKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQM----ENFKNVLR---R-MKETS 603 (711)
Q Consensus 541 ~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~---~-~~~~~ 603 (711)
+..+.+.|-. ....++|+..|.+.-+.. |+...--.++..+...|.. .+..++-- . +.+.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 9999988742 123667888887766543 4433322233333344432 23333331 1 11233
Q ss_pred C---CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 005161 604 C---TFDHYTYNIMIDIYGEQGWINEVVGVLTELKEC 637 (711)
Q Consensus 604 ~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (711)
. ..+.-.+..++.++.-.||.++|.+..++|.+.
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2 234445667888889999999999999999874
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.67 E-value=0.073 Score=40.85 Aligned_cols=92 Identities=15% Similarity=0.005 Sum_probs=74.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCC
Q 005161 58 GLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED-KVVPN--LENWLVMLNAYSQQGK 134 (711)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~ 134 (711)
-+++..|+++.|++.|.+....-|....+||.-.+++.-+|+.++|++-+++.++. |...- ..+|..-...|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 45678999999999999999999988999999999999999999999999987764 33311 1234445556777899
Q ss_pred HHHHHHHHHHHHHcC
Q 005161 135 LEEAELVLVSMREAG 149 (711)
Q Consensus 135 ~~~a~~~~~~~~~~~ 149 (711)
.+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999998888876
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.65 E-value=0.019 Score=55.23 Aligned_cols=66 Identities=8% Similarity=-0.107 Sum_probs=45.9
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 005161 570 SVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDH----YTYNIMIDIYGEQGWINEVVGVLTELKEC 637 (711)
Q Consensus 570 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (711)
+.+...++.+..+|...|++++|...+++.++. .|+. .+|..+..+|...|++++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445566777777777777777777777777763 4553 24677777777777777777777777763
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.64 E-value=0.047 Score=52.64 Aligned_cols=66 Identities=17% Similarity=0.004 Sum_probs=47.1
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE---SAYSAMITIYTRLSLYEKAEEVIRLIRED 113 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 113 (711)
.+...+..+..+|.+.|++++|...|++..+.+|.+. .+|+.+..+|...|++++|+..+++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455666777777777777777777777777777664 34777777777777777777777777664
No 231
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.53 E-value=0.52 Score=41.77 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV--PNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLM 161 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (711)
...|..-+....+.|++++|.+.|+.+....+. ....+...++-++-+.++++.|+..+++.++..+.....-|...+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 445555566667778888888888877665422 133455566667777788888888888877764333333344444
Q ss_pred HHhh
Q 005161 162 TGYG 165 (711)
Q Consensus 162 ~~~~ 165 (711)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 4433
No 232
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.49 E-value=0.21 Score=40.71 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=59.2
Q ss_pred HccCCHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCH
Q 005161 61 KKSWNVEEAEFAFNQMRKLGLVC--ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLEN---WLVMLNAYSQQGKL 135 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 135 (711)
++.+..++|+..|..+.+.+... .-+...+.....+.|+...|...|.++-.....|...- ...-.-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45556666666666666555432 22334445555666666666666666655444443221 11111223344555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 005161 136 EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKD 182 (711)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (711)
+......+-+...+-+.-...-..|.-+-.+.|++..|..+|+.+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555444444333222222333444444455666666666655554
No 233
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.43 E-value=0.5 Score=40.32 Aligned_cols=182 Identities=13% Similarity=0.024 Sum_probs=88.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005161 63 SWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVL 142 (711)
Q Consensus 63 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 142 (711)
.|-...|.--|.......|..+.++|.+...+...|+++.|.+.|+...+.++.-+-...+.-|. +--.|+++-|.+-+
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHH
Confidence 34444455555555555666667777777777777777777777777766554423222222222 22456777776555
Q ss_pred HHHHHcCC-CCCHHHHHHHHHHhhccCChHHHHHHH-HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 005161 143 VSMREAGF-SPNIVAYNTLMTGYGKVSNMEAAQRLF-LSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGY 220 (711)
Q Consensus 143 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 220 (711)
...-+.+. +|-...|--+.. ..-++.+|..-+ ++... .|..-|..-|-.+.- |+..+ ..+++++....-
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a~ 227 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKISE-ETLMERLKADAT 227 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhccH-HHHHHHHHhhcc
Confidence 55544421 122222332222 233455554433 33332 233333333322211 11110 111222221100
Q ss_pred ------CccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 005161 221 ------KPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMG 254 (711)
Q Consensus 221 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 254 (711)
+.-+.||--+.+.+...|+.++|..+|+-.+...
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 0114566777777777777777777777776644
No 234
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.42 E-value=0.01 Score=42.61 Aligned_cols=62 Identities=24% Similarity=0.354 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHC--CCC---CC-hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 610 TYNIMIDIYGEQGWINEVVGVLTELKEC--GLR---PD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
+++.+...|...|++++|+..|++..+. ... |+ ..+++.+..+|...|++++|++.+++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666666777777777777666541 011 22 34566677777777777777777776653
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.064 Score=50.44 Aligned_cols=90 Identities=18% Similarity=0.067 Sum_probs=44.6
Q ss_pred HHHHhcCChHHHHHHHHHHhHcC-----CCC---------CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHH
Q 005161 23 YACNKRGCVELGAKWFHMMLECD-----VQP---------NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYS 88 (711)
Q Consensus 23 ~~~~~~~~~~~a~~~~~~~~~~~-----~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 88 (711)
..|.+.|++..|..-|+.++..= .++ -...+..|.-+|.+.+++..|++.-.++++.++.+..+..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 36778899999998888866521 000 0112223333344444444444444444444444444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 89 AMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
.-..+|...|+++.|+..|+.+++
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH
Confidence 444444444444444444444444
No 236
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.37 E-value=0.88 Score=42.54 Aligned_cols=164 Identities=12% Similarity=0.129 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 539 ISYNTIIAAYGQNKNLE---SMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMI 615 (711)
Q Consensus 539 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 615 (711)
.++..++.+|...+..+ +|..+++.+... ++..+.++..-+..+.+.++.+.+.+.+.+|... +.-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHH
Confidence 45667778887777655 556666666544 3444556666677777788999999999999875 222333444444
Q ss_pred HHH---hhcCCHHHHHHHHHHHHHCCCCCChH-hHHHH----HHHHhccCC------hHHHHHHHHHHHHc---CCCCCc
Q 005161 616 DIY---GEQGWINEVVGVLTELKECGLRPDLC-SYNTL----IKAYGIAGM------VEDAVGLVKEMREN---GIEPDK 678 (711)
Q Consensus 616 ~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l----~~~~~~~g~------~~~A~~~~~~~~~~---~~~p~~ 678 (711)
..+ .. .....|...++.++...+.|... ....+ +......++ .+...+++....+. .+.+..
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444 33 33456777777776654566543 11111 112222222 33344444433221 222221
Q ss_pred -chHHHHH----HHHHhcchHHHHHHHHHHHH
Q 005161 679 -ITYTNMI----TALQRNDKFLEAIKWSLWMK 705 (711)
Q Consensus 679 -~~~~~l~----~~~~~~~~~~~A~~~~~~m~ 705 (711)
....+++ ..+.+.+++.+|.+|++-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2223332 23567899999999998543
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.36 E-value=0.037 Score=45.82 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=38.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCChhh
Q 005161 507 LNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFD-----GFSVSLEA 575 (711)
Q Consensus 507 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 575 (711)
...++..+...|++++|..+...+....|.+...|..++.+|...|+...|.+.|+.+.+. |++|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555666666777777776666666666666666666666666666666666655332 55555443
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.34 E-value=0.13 Score=40.98 Aligned_cols=71 Identities=15% Similarity=0.025 Sum_probs=45.8
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 60 YKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYS 130 (711)
Q Consensus 60 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (711)
..+.|++++|.+.|+.+..+-|.+ ..+...++.+|.+.+++++|...++++++..+......|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 346677777777777777766654 45666777777777777777777777776654433334444444443
No 239
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.26 E-value=0.013 Score=36.17 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=25.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHH
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMI 91 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 91 (711)
++..+..+|.+.|++++|.++|+++.+.+|.+..+|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555666666666666666666666666666666655544
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.84 Score=41.35 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcC
Q 005161 397 DLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCG 448 (711)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 448 (711)
|...-..+...+...|+.+.|.+.+-.+.+...-..|...-..++..+...|
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4444555555566666666666555544443322333344444444444444
No 241
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.22 E-value=0.41 Score=37.14 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 005161 439 DMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGF 500 (711)
Q Consensus 439 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 500 (711)
.-+..+...|.-++..+++..+.+ +-.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 333444445555555555555443 2234444555555555555555555555555555443
No 242
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.16 E-value=0.11 Score=41.13 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 005161 393 GIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQ 445 (711)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (711)
...|+..+..+++.+|+..+++..|+++++.+.+..+++-+...|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34577788888888888888888888888888777777767777777776543
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.14 E-value=1.1 Score=41.19 Aligned_cols=226 Identities=20% Similarity=0.102 Sum_probs=143.9
Q ss_pred cCChHHHHHHHHHHhHcCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHhcCCHHHHH
Q 005161 28 RGCVELGAKWFHMMLECDVQP-NVATFGMLMGLYKKSWNVEEAEFAFNQMRK--LGLVCESAYSAMITIYTRLSLYEKAE 104 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~ 104 (711)
.+....+...+.......... ....+......+...+++..+...+..... ..+.....+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 455666666666666653221 356666677777888888888888888776 44444667777888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 005161 105 EVIRLIREDKVVPNLENWLVMLN-AYSQQGKLEEAELVLVSMREAGF--SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIK 181 (711)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 181 (711)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888877755443 122222333 67788888888888888865321 1233333444444566778888888888877
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005161 182 DVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGC 255 (711)
Q Consensus 182 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (711)
..........+..+...+...+.++.|...+......... ....+..+...+...+..+.+...+.......+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 6432113556667777777777788888888877765221 123333334444455566777766666666544
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=96.14 E-value=0.57 Score=45.62 Aligned_cols=114 Identities=11% Similarity=-0.005 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHH---HcCCCchhHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 005161 520 FKRVRKLFSMAK---KLGLVDVISYNTIIAAYGQN---------KNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEG 587 (711)
Q Consensus 520 ~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 587 (711)
.+.|..+|.++. ..+|.....|..+..++... .+..+|.+..+...+.+ +.|+.....+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 456666676666 44444455555555544321 11223444444444443 444555555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 588 QMENFKNVLRRMKETSCTFD-HYTYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
+++.|...|++.... .|| ..+|......+.-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 555566666555543 233 22333334444445555666555555444
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.12 E-value=0.6 Score=43.26 Aligned_cols=129 Identities=12% Similarity=-0.011 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHH
Q 005161 542 NTIIAAYGQNKNLESMSSTVQEMQFDG-----FSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKE----TSCTFDHYTYN 612 (711)
Q Consensus 542 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~ 612 (711)
.++..++...+.++++++.|+...+.- .-....++-.+...|.+..|+++|.....+..+ .++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 334455555555555555555544321 111233455566666666666666655554432 11111111122
Q ss_pred -----HHHHHHhhcCCHHHHHHHHHHHHH----CCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHH
Q 005161 613 -----IMIDIYGEQGWINEVVGVLTELKE----CGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 613 -----~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 670 (711)
.+.-++...|.+-+|.+.-++..+ .|-.+. ......+...|...|+.+.|+.-|+...
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 222344555665555555555443 333332 3344555666666777766666666543
No 246
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.11 E-value=1.1 Score=41.09 Aligned_cols=221 Identities=14% Similarity=0.001 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCccHHHHHHHHHHHhccCcHHHHHH
Q 005161 448 GMLDKLSYLYYKILKSGITW-NQELYDCVINCCARALPIDELSRVFDEMLQH-GFTPNIITLNVMLDIYGKAKLFKRVRK 525 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 525 (711)
+....+...+.......... ...........+...+....+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444444444444443221 2344555555556666666666666655531 123334444444555555566666666
Q ss_pred HHHHHHHcCCCchhHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005161 526 LFSMAKKLGLVDVISYNTIIA-AYGQNKNLESMSSTVQEMQFDGF--SVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET 602 (711)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (711)
.+.......+.+......... .+...|+++.+...+.+...... ......+......+...++.+.+...+......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 666665544433233333333 55666666666666666544210 012222233333344555666666666666553
Q ss_pred CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 603 SCTF-DHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 603 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
. +. ....+..+...+...++++.|...+...... .|+ ...+..+...+...+..+.+...+.+...
T Consensus 197 ~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 197 N-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred C-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 22 2445555555556666666666666666552 233 33334444444444556666666666554
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.12 Score=48.79 Aligned_cols=91 Identities=13% Similarity=0.010 Sum_probs=56.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcC----CCc-----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005161 57 MGLYKKSWNVEEAEFAFNQMRKLG----LVC-----------ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLEN 121 (711)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~~~~----~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (711)
.+.|.+.|++..|...|+++...= ..+ ..+++.+..+|.+.+++..|+...+.++..++. |.-+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhH
Confidence 456678899999988888755321 111 123555666666666666666666666655443 5555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005161 122 WLVMLNAYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 122 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 148 (711)
+-.-..++...|+++.|...|+.+++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 555566666666666666666666665
No 248
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.94 Score=39.58 Aligned_cols=146 Identities=12% Similarity=0.055 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCChhhHHHH
Q 005161 505 ITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFD---G--FSVSLEAYNSM 579 (711)
Q Consensus 505 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l 579 (711)
..++.-...|..+|.++.|-..+++.-+. ....++++|+++|++.... + ...-...+...
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 33444455666666666666655544332 2344556666666554322 1 01112233444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHCC--CCC-ChHhHHHHHH
Q 005161 580 LDAYGKEGQMENFKNVLRRMKE----TSCTFDH-YTYNIMIDIYGEQGWINEVVGVLTELKECG--LRP-DLCSYNTLIK 651 (711)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~~~~~l~~ 651 (711)
...+.+...+++|-..+.+-.. ..--++. ..|-..|-.+....|+..|.+.++.-.+.+ ..| +..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 5556666677666655544321 1112222 234455556666778888888888754421 122 3567777777
Q ss_pred HHhccCChHHHHHHH
Q 005161 652 AYGIAGMVEDAVGLV 666 (711)
Q Consensus 652 ~~~~~g~~~~A~~~~ 666 (711)
+| ..|+.+.+.+++
T Consensus 237 ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVL 250 (308)
T ss_pred Hh-ccCCHHHHHHHH
Confidence 77 566777766554
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=96.02 E-value=0.6 Score=45.46 Aligned_cols=148 Identities=7% Similarity=0.026 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHh-CCCCcc-HHHHHHHHHHHhc---------cCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC
Q 005161 484 PIDELSRVFDEMLQ-HGFTPN-IITLNVMLDIYGK---------AKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNK 552 (711)
Q Consensus 484 ~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 552 (711)
..+.|+.+|.+... ....|+ ...|..+..++.. .....+|.++..+..+.++.|+.+...+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 45678888888882 223444 3344444433321 234567788888888998899999999998888888
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhhcCCHHHHHH
Q 005161 553 NLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHY---TYNIMIDIYGEQGWINEVVG 629 (711)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~ 629 (711)
+.+.|...|++....+ |.....|......+.-.|+.++|.+.+++..+. .|... .....++.|+. ..+++|++
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcC-CchhhhHH
Confidence 8999999999988764 445666777777778889999999999997763 45432 33333445554 34677777
Q ss_pred HHHHHH
Q 005161 630 VLTELK 635 (711)
Q Consensus 630 ~~~~~~ 635 (711)
++-+-.
T Consensus 429 ~~~~~~ 434 (458)
T PRK11906 429 LYYKET 434 (458)
T ss_pred HHhhcc
Confidence 765433
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=1 Score=39.41 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=24.1
Q ss_pred HHHHHHHccCChhhHHHHHHHHhhcC---CCCcHHHHHHHHHHHHccCCHHHHHHHH
Q 005161 333 LLICSCKDSGHLANAVKIYSHMHICD---GKPNLHIMCTMIDTYSVMGMFTEAEKLY 386 (711)
Q Consensus 333 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 386 (711)
..|-.+...+++..|...++.-.+.+ -+.+..+...++.+| ..|+.+++..++
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 33334444445555555555432211 123445555666554 345555544433
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.92 E-value=0.62 Score=47.18 Aligned_cols=181 Identities=19% Similarity=0.151 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-chh------HHHHHHHHHHh----cCC
Q 005161 31 VELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLV-CES------AYSAMITIYTR----LSL 99 (711)
Q Consensus 31 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~------~~~~l~~~~~~----~~~ 99 (711)
+.-..=+|+.++.. +||.. ..++....-.||-+.+++.+....+.+-. .+- .|...+..++. ...
T Consensus 173 v~~G~G~f~L~lSl-LPp~~---~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~ 248 (468)
T PF10300_consen 173 VYFGFGLFNLVLSL-LPPKV---LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVP 248 (468)
T ss_pred HHHHHHHHHHHHHh-CCHHH---HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 45555567777765 35543 34666666789999999998887663322 221 23444433333 456
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhccCChHHHHH
Q 005161 100 YEKAEEVIRLIREDKVVPNLENWLVM-LNAYSQQGKLEEAELVLVSMREAG---FSPNIVAYNTLMTGYGKVSNMEAAQR 175 (711)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~ 175 (711)
.+.|.++++.+...- |+...|... .+.+...|++++|.+.++...... .+.....+-.++-.+.-.+++++|.+
T Consensus 249 ~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 249 LEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 788999999988865 555555433 455666899999999999766421 12234456667777888899999999
Q ss_pred HHHHHHhcCCCCChhhHHHHH-HHHHhcCCH-------HHHHHHHHHHHhc
Q 005161 176 LFLSIKDVGLEPDETTYRSMI-EGWGRAGNY-------REAKWYYKELKHL 218 (711)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~-------~~A~~~~~~~~~~ 218 (711)
.|..+.+.+- -+...|..+. .++...|+. ++|.++|.+....
T Consensus 327 ~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 327 YFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999988542 2334444333 334456777 8999999888654
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.2 Score=45.61 Aligned_cols=115 Identities=7% Similarity=-0.030 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchh----HHHHHHHHHHhcCCHHHH
Q 005161 482 ALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVI----SYNTIIAAYGQNKNLESM 557 (711)
Q Consensus 482 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a 557 (711)
.|+..+|-..++++++. .|.|...+...-.+|.-.|+...-...++++...-.++.+ ....+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45555555555555543 3445555555555566666666666666555544222221 112223333455556666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 558 SSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRR 598 (711)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (711)
.+.-++..+.+ +.|.-.-......+.-.|+..++.+...+
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 65555555443 33333333444444455555555555444
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.88 E-value=0.14 Score=39.44 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=61.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-CCCCC--hHhHHHHHHHHhccCC
Q 005161 582 AYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKEC-GLRPD--LCSYNTLIKAYGIAGM 658 (711)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~ 658 (711)
+.+..|+.+.|++.|.+.+.. .+.....||.-..++.-+|+.++|+.-+++..+. |-+.. -..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456677888888888777764 3456667777777777788888888877777762 22211 1234444556667777
Q ss_pred hHHHHHHHHHHHHcC
Q 005161 659 VEDAVGLVKEMRENG 673 (711)
Q Consensus 659 ~~~A~~~~~~~~~~~ 673 (711)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777877777777654
No 254
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=2.7 Score=43.33 Aligned_cols=332 Identities=11% Similarity=0.092 Sum_probs=170.2
Q ss_pred HHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 333 LLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGM---FTEAEKLYLNLKSSGIRLDLIAFTVVVRMYV 409 (711)
Q Consensus 333 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (711)
.+++-+...+.+..|+++-..+...-..- ...|......+.+..+ -+.+..+-+++... . .+...|..+..--.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHH
Confidence 45666777888888888887775322111 4556555555555432 22222222333221 2 34455666666666
Q ss_pred HcCChHHHHHHHHHHHhcCCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHH
Q 005161 410 KAGSLKDACAVLETMEKQKDIEP---DAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPID 486 (711)
Q Consensus 410 ~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 486 (711)
..|+.+-|..+++.=.....-.| +..-+..-+.-+.+.|+.+....++-.+...- +...+.. ...+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~------~l~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFM------TLRNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHH------HHHhch
Confidence 78888888887764311110001 11223344445556666666665555543321 1111111 112334
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHH-HHHHHcC-C-CchhHHHHHHHHHHhcCCHH---H----
Q 005161 487 ELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLF-SMAKKLG-L-VDVISYNTIIAAYGQNKNLE---S---- 556 (711)
Q Consensus 487 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~---~---- 556 (711)
.|..+|.++.+.. +.. .+-+.|.+..+...+-.+. +...... . +-..........+.+.+... +
T Consensus 590 ~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 590 LALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 4555555555421 111 1122232222222221111 1100000 0 11222333344444433311 1
Q ss_pred ---HHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 005161 557 ---MSSTVQEMQFD-GFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLT 632 (711)
Q Consensus 557 ---a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 632 (711)
-+.+.+.+... |......+.+--+..+...|+..+|.++-.+.. -||-..|..-+.+++..+++++-+++-+
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 11222222221 333344445555666677788888888777765 5777788888888888888887766655
Q ss_pred HHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHH
Q 005161 633 ELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWS 701 (711)
Q Consensus 633 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 701 (711)
..+ .+.-|.-...+|.+.|+.++|.+++-+... .. -.+.+|.+.|++.+|.+.-
T Consensus 740 skk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 740 SKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 432 244566677888888888888887766432 11 4667788888888877654
No 255
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.81 E-value=1.1 Score=38.47 Aligned_cols=180 Identities=13% Similarity=0.027 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
|-..-|..-|.+.+...+. -+.+|+.+.--+...|+++.|.+.|+...+.++.-+-...|.-+. +.-.|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHH
Confidence 3334444444444443333 456788888888889999999999999998754333333333333 33468999998877
Q ss_pred HHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHH-HHHHhcCCCccHhhHHHH-HHHHHcCCCHHHHHHHHHHHHHCC
Q 005161 178 LSIKDVGL-EPDETTYRSMIEGWGRAGNYREAKWYY-KELKHLGYKPNASNLYTL-INLHAKYEDEEGAVNTLDDMLNMG 254 (711)
Q Consensus 178 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~ 254 (711)
...-+.+. .|=...|--++. +.-++.+|..-+ ++.... +..-|... ...|...-.. +.+++++....
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a 226 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISE---ETLMERLKADA 226 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccH---HHHHHHHHhhc
Confidence 76655332 232333433332 344666665443 333332 33333322 2333222222 22333333322
Q ss_pred CCC-------hhHHHHHHHHHHhcCCCCcHHHHHHHhhhccC
Q 005161 255 CQH-------SSILGTLLQAYEKAGRTDNVPRILKGSLYQHV 289 (711)
Q Consensus 255 ~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 289 (711)
.++ ++++-.+...+...|+.++|..+|+-++..++
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 222 25677899999999999999999998876543
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.66 E-value=0.35 Score=48.11 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHH
Q 005161 259 SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSC 338 (711)
Q Consensus 259 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 338 (711)
.....++..+.+.|..+.|+.+.+ |.. .-.....+.|+++.|.++.++.. +...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~~------~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKELD------DPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCCS------THHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhcC------cHHHHHHHHHHH
Confidence 334555555555555555555543 221 12344566777777776654432 445677777777
Q ss_pred HccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 005161 339 KDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDAC 418 (711)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 418 (711)
...|+++-|...|.+... +..++-.|...|+.+.-.++.+.....|- ++....++.-.|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 777777777777766542 44455556667776666666666555431 344445555567777777
Q ss_pred HHHHHH
Q 005161 419 AVLETM 424 (711)
Q Consensus 419 ~~~~~~ 424 (711)
+++...
T Consensus 423 ~lL~~~ 428 (443)
T PF04053_consen 423 DLLIET 428 (443)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 666654
No 257
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.64 E-value=2.5 Score=41.46 Aligned_cols=113 Identities=13% Similarity=0.067 Sum_probs=79.9
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--hcCCHHHHHHHHHHHHH-
Q 005161 560 TVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYG--EQGWINEVVGVLTELKE- 636 (711)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~- 636 (711)
++..+...+.+.....-+.+++.+...|-..+|+..+..+... .+|+...|..++..-. ..-++..+..+++.|..
T Consensus 447 Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~ 525 (568)
T KOG2396|consen 447 IISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE 525 (568)
T ss_pred HHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH
Confidence 3444444443333334467888888999999999999999876 3677788887775422 12237788889988876
Q ss_pred CCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 005161 637 CGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEP 676 (711)
Q Consensus 637 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 676 (711)
.| .|+..|...+.--...|..+.+-.++.++.+. +.|
T Consensus 526 fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt-l~~ 562 (568)
T KOG2396|consen 526 FG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMKT-LQG 562 (568)
T ss_pred hC--CChHHHHHHHHhhccCCCcccccHHHHHHHHh-hCh
Confidence 45 67778877777777889998888888887652 444
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.23 Score=44.38 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=80.2
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCC--CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQ--PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAM 90 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 90 (711)
..|+.-+..+ ..|++..|...|...++..+. -....+-=|..++...|+++.|...|..+.+..|.+ ++++..+
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3566666555 566699999999999986522 112233347888899999999999999999988765 5789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005161 91 ITIYTRLSLYEKAEEVIRLIREDKVV 116 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 116 (711)
..+..+.|+.++|...|+++.+.-+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999987644
No 259
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.54 E-value=0.24 Score=39.19 Aligned_cols=50 Identities=8% Similarity=0.022 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-CCCCCChHhHHHHHHH
Q 005161 603 SCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKE-CGLRPDLCSYNTLIKA 652 (711)
Q Consensus 603 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~ 652 (711)
...|+..+..+++.+|+..|++..|+++++...+ .+++.+..+|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4567777888888888888888888888887776 4555566777777633
No 260
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.42 E-value=0.35 Score=48.09 Aligned_cols=104 Identities=16% Similarity=0.114 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 005161 541 YNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGE 620 (711)
Q Consensus 541 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (711)
.+.++..+.+.|-++.|+++..+-. .-.+...+.|+++.|.++.++. ++...|..|.+....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4444555555555555555433211 1122334455555555544332 244556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 621 QGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 621 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
+|+++-|.+.|++..+ +..|+-.|...|+.++-.++.+....
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666666666655432 34455555555555555555544443
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.40 E-value=2.4 Score=39.71 Aligned_cols=165 Identities=11% Similarity=0.032 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhccCcH---HHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 005161 505 ITLNVMLDIYGKAKLF---KRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLD 581 (711)
Q Consensus 505 ~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 581 (711)
.++..++.+|...+.. ++|..+++.+....+..+..+..-+..+.+.++.+.+.+.+.+|... +......+...+.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 3456667777776654 45666666776666656666767777777788889999999998876 2324445555555
Q ss_pred HHHh--cCCHHHHHHHHHHHHHcCCCCCHH-HHHH-HH-H--HHhhcCC------HHHHHHHHHHHHH-CCCCCChH---
Q 005161 582 AYGK--EGQMENFKNVLRRMKETSCTFDHY-TYNI-MI-D--IYGEQGW------INEVVGVLTELKE-CGLRPDLC--- 644 (711)
Q Consensus 582 ~~~~--~g~~~~A~~~~~~~~~~~~~~~~~-~~~~-l~-~--~~~~~g~------~~~A~~~~~~~~~-~~~~p~~~--- 644 (711)
.+.. ......|...+..+....+.|... .... ++ . .....++ ++....+++.+.. .+.+.+..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4422 123455666666666544555553 1111 11 1 1122222 4445555554333 12222322
Q ss_pred hHHHHH----HHHhccCChHHHHHHHHHHH
Q 005161 645 SYNTLI----KAYGIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 645 ~~~~l~----~~~~~~g~~~~A~~~~~~~~ 670 (711)
+..+++ ..+.+.++++.|.+.|+-..
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 233333 44668899999999998654
No 262
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.36 E-value=1.3 Score=36.43 Aligned_cols=132 Identities=10% Similarity=0.001 Sum_probs=93.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch----hHHHHHH
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPNV-ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE----SAYSAMI 91 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~ 91 (711)
.|..-|. +.+.+..++|+.-|..+.+.|...=+ ........+.+..|+-..|...|+.+-...+.|. -+...-.
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3433333 45667789999999999987743211 1222334556789999999999999988766552 2344445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005161 92 TIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 149 (711)
-.++.+|.|+......+.+-..+...-......+.-+-.+.|++..|...|..+....
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 6778899999998888877655433334455667767778999999999999988753
No 263
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.34 E-value=4.2 Score=42.28 Aligned_cols=104 Identities=11% Similarity=0.050 Sum_probs=68.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLV--CESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
=++++.+.+.+++|..+-+.....-+. ....+...+..+...|++++|-...-.|... +..-|...+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 457777888888888887766554432 3567778888888888888888888877763 4455666666666555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 005161 134 KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK 166 (711)
Q Consensus 134 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (711)
... .++..+.......++.+|..++..+..
T Consensus 438 ~l~---~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLT---DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccc---hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 544 334444444334566777777766654
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.31 E-value=1.3 Score=48.17 Aligned_cols=134 Identities=14% Similarity=0.076 Sum_probs=76.8
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhcCCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHH
Q 005161 159 TLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTY----RSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLH 234 (711)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (711)
..+..--++|-+..|+.++. |+...+ .+....+.+.+.+++|.-.|+..-+ ....+.+|
T Consensus 913 e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~ 975 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAY 975 (1265)
T ss_pred HHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHH
Confidence 33333345566666665552 444443 3444455567777777777765432 22356677
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHH
Q 005161 235 AKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMK 314 (711)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 314 (711)
..+|++.+|..+..++....-.....-..++..+...+++-+|-++.+..... ..-.+..|++...+++|+.
T Consensus 976 ~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlr 1047 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALR 1047 (1265)
T ss_pred HHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHH
Confidence 77888888877776654321111122256777777778888887777765443 1233445566666666665
Q ss_pred HHH
Q 005161 315 VLG 317 (711)
Q Consensus 315 ~~~ 317 (711)
+-.
T Consensus 1048 va~ 1050 (1265)
T KOG1920|consen 1048 VAS 1050 (1265)
T ss_pred HHH
Confidence 543
No 265
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.30 E-value=0.54 Score=37.64 Aligned_cols=58 Identities=22% Similarity=0.132 Sum_probs=27.7
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC--ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 005161 200 GRAGNYREAKWYYKELKHLGYK--PNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQH 257 (711)
Q Consensus 200 ~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 257 (711)
.+.|++++|.+.|+.+...-.. -...+-..++.++.+.++++.|...+++.++..|.+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 3555566665555555544111 012233344445555555555555555555554443
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.26 E-value=0.076 Score=32.67 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWL 123 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 123 (711)
+|..+...|...|++++|.++|+++++..+. +...+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHH
Confidence 4555566666666666666666666555433 334433
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.24 E-value=1.4 Score=36.08 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=8.8
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 005161 579 MLDAYGKEGQMENFKNVLRR 598 (711)
Q Consensus 579 l~~~~~~~g~~~~A~~~~~~ 598 (711)
.+..|.+.+-++++.-++.+
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHh
Confidence 44444444444444444443
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.7 Score=42.34 Aligned_cols=156 Identities=9% Similarity=-0.075 Sum_probs=109.0
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH--HHHhcCCHH
Q 005161 60 YKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED-KVVPNLENWLVMLN--AYSQQGKLE 136 (711)
Q Consensus 60 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~--~~~~~~~~~ 136 (711)
+-..|+..+|-..++++.+..|.+--++.-.=.+|.-+|+...-...++++... +......+|..-+. ++...|-++
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346789999999999999988887667777778888899999999999988764 43322333433333 334679999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 005161 137 EAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEP---DETTYRSMIEGWGRAGNYREAKWYYK 213 (711)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~ 213 (711)
.|++.-++..+.+ +.|.....++...+--.|+..++.+...+-...--.. -..-|=-..-.++..+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999988888875 4577777778888888899999988876644321101 11112223334567789999999998
Q ss_pred HHH
Q 005161 214 ELK 216 (711)
Q Consensus 214 ~~~ 216 (711)
+-.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 654
No 269
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.23 E-value=1.6 Score=44.37 Aligned_cols=83 Identities=10% Similarity=-0.054 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCChhhHHHHHHHHHhcCCHHHHHHH
Q 005161 519 LFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDG--F-SVSLEAYNSMLDAYGKEGQMENFKNV 595 (711)
Q Consensus 519 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (711)
+.+.|.+++..+.+..|....-...-.+.+...|++++|++.++...... . ......+.-+...+.-.++|++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 34455555555555444433333334444445555555555555433210 0 01112222333444445555555555
Q ss_pred HHHHHH
Q 005161 596 LRRMKE 601 (711)
Q Consensus 596 ~~~~~~ 601 (711)
|..+.+
T Consensus 328 f~~L~~ 333 (468)
T PF10300_consen 328 FLRLLK 333 (468)
T ss_pred HHHHHh
Confidence 555554
No 270
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.09 E-value=0.035 Score=31.74 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=24.8
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHhcCCHHHHH
Q 005161 73 FNQMRKLGLVCESAYSAMITIYTRLSLYEKAE 104 (711)
Q Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 104 (711)
|++..+.+|.+..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56677777877888888888888888888775
No 271
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.05 E-value=3.3 Score=39.37 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=75.9
Q ss_pred hHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 330 LYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYV 409 (711)
Q Consensus 330 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (711)
+.+..+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-.++-.. +-++.-|...+..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 55666677777888888877776664 47888888888888888888877665332 224567888888888
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005161 410 KAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYL 456 (711)
Q Consensus 410 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 456 (711)
+.|...+|..++..+. +..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHH
Confidence 8888888888877641 13456667777877777653
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.84 E-value=1.4 Score=34.27 Aligned_cols=30 Identities=20% Similarity=0.100 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 005161 608 HYTYNIMIDIYGEQGWINEVVGVLTELKEC 637 (711)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (711)
+...-.+..+|.+.|+..++.+++.++.+.
T Consensus 120 p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 120 PEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 333333333444444444444444433333
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.74 E-value=1.7 Score=35.63 Aligned_cols=54 Identities=13% Similarity=0.021 Sum_probs=32.6
Q ss_pred HccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
.+.++.+.+..++..+.-..|.....-..-+..+...|++.+|..+|+.+....
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345566666666666666666555444445555666666666666666655443
No 274
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.59 E-value=1.3 Score=41.13 Aligned_cols=166 Identities=11% Similarity=0.011 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CChhh
Q 005161 400 AFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD---AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGIT-----WNQEL 471 (711)
Q Consensus 400 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 471 (711)
.|..+.+++-+.-++.+++.+-+.-....|..|. ......+..++...+.++++++.|+...+.... ..-.+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4444555555555566666665554444444331 123334556666666777777777766543211 12345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh----CCCCcc-----HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC------C
Q 005161 472 YDCVINCCARALPIDELSRVFDEMLQ----HGFTPN-----IITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL------V 536 (711)
Q Consensus 472 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~ 536 (711)
+..+...|.+..|+++|.-+..+..+ .++..- ......|.-++...|.+-.|.+.-++..+... .
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 66666777777777777666554432 111111 11112223344455665555555554433222 1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 537 DVISYNTIIAAYGQNKNLESMSSTVQEMQ 565 (711)
Q Consensus 537 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 565 (711)
.......+.+.|...|+.+.|+.-|++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 33344556667777777777776666543
No 275
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.43 E-value=8 Score=40.99 Aligned_cols=86 Identities=10% Similarity=0.102 Sum_probs=36.2
Q ss_pred HHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHc--
Q 005161 335 ICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGI-RLDLIAFTVVVRMYVKA-- 411 (711)
Q Consensus 335 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-- 411 (711)
...+.-.|.++.|++++-. ......+..++...+..+.-.+-.+... ..+..... .|...-+..+|..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3444556777777777766 1122445555555554443222222111 22222110 11124466677777763
Q ss_pred -CChHHHHHHHHHHH
Q 005161 412 -GSLKDACAVLETME 425 (711)
Q Consensus 412 -~~~~~A~~~~~~~~ 425 (711)
.++..|+++|-.+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 57778888887763
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.34 E-value=0.83 Score=38.98 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
..+..+...|++.|+.+.|.+.|.++.+....+ ...+..+++.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566677777777777777777776655443 34566677777777777777666665543
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.31 E-value=4.8 Score=39.72 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 577 NSMLDAYGKEGQMENFKNVLRRMKETS-CTFDHYTYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 577 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
..+..++.+.|+.++|.+.++++.+.. ..........|+.++...+.+.++..++.+.-+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 345555566677777777777766431 111223455666677777777777777666543
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.29 E-value=0.8 Score=41.78 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=33.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 55 MLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 55 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
.++..+...|+.+.+...++.+...+|.....|..++.+|.+.|+...|+..|+.+..
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444445555666666666666666666566666666666666666666665555443
No 279
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.01 E-value=2.4 Score=35.92 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=62.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhcc
Q 005161 583 YGKEGQMENFKNVLRRMKETSCTFDH-----YTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIA 656 (711)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 656 (711)
+.+.|++++|..-|..+++. +++.. ..|..-..++.+.+.++.|+.-..+.++ +.|+ ......-+.+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHhh
Confidence 45677888888877777764 23322 2444455667778888888888888877 3454 44444556778888
Q ss_pred CChHHHHHHHHHHHHcCCCCCc
Q 005161 657 GMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 657 g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
..+++|+.-|+++.+ ..|..
T Consensus 182 ek~eealeDyKki~E--~dPs~ 201 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE--SDPSR 201 (271)
T ss_pred hhHHHHHHHHHHHHH--hCcch
Confidence 888888888888887 56654
No 280
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.96 E-value=0.6 Score=41.61 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=56.9
Q ss_pred CCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC----------------CHHHHH
Q 005161 570 SVSLEAYNSMLDAYGK-----EGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQG----------------WINEVV 628 (711)
Q Consensus 570 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~A~ 628 (711)
..|...|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+=+.. .-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 4455566666655543 2456666677777777888888888888887764432 122356
Q ss_pred HHHHHHHHCCCCCChHhHHHHHHHHhccCCh
Q 005161 629 GVLTELKECGLRPDLCSYNTLIKAYGIAGMV 659 (711)
Q Consensus 629 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 659 (711)
+++++|..+|+.||..+-..|+.++.+.+..
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 6666666666666666666666666665553
No 281
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.94 E-value=3.5 Score=34.97 Aligned_cols=92 Identities=14% Similarity=0.057 Sum_probs=42.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 005161 90 MITIYTRLSLYEKAEEVIRLIREDKVVPNL--ENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV 167 (711)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (711)
+...++..+++++|..-++..+.....-+. .+-..+.+.....|.+|+|..+++.....+. .......-.+++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 344555555555555555554432111111 1112234444455555666555555544322 122222333455555
Q ss_pred CChHHHHHHHHHHHhc
Q 005161 168 SNMEAAQRLFLSIKDV 183 (711)
Q Consensus 168 ~~~~~a~~~~~~~~~~ 183 (711)
|+-++|+.-|+...+.
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 6666666655555554
No 282
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.83 E-value=1.7 Score=36.73 Aligned_cols=90 Identities=20% Similarity=0.124 Sum_probs=40.9
Q ss_pred HHhcCChHHHHHHHHHHhHcCCCCCH----hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCH
Q 005161 25 CNKRGCVELGAKWFHMMLECDVQPNV----ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLY 100 (711)
Q Consensus 25 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (711)
++.+|++.+|..-|..+++.-..... ..|..-..++.+.+.++.|..--.+..+.+|....+...-..+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44455555555555555544211111 11222223344445555555555555555554444444444455555555
Q ss_pred HHHHHHHHHHHhCC
Q 005161 101 EKAEEVIRLIREDK 114 (711)
Q Consensus 101 ~~a~~~~~~~~~~~ 114 (711)
++|++-|..++..+
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 55555555554433
No 283
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.83 E-value=3.1 Score=34.00 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=18.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR 96 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (711)
++..+...+........++.+...++......+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 34444444444444444444444443333344444444443
No 284
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.71 E-value=7.9 Score=38.30 Aligned_cols=150 Identities=9% Similarity=0.065 Sum_probs=83.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccC
Q 005161 439 DMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAK 518 (711)
Q Consensus 439 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 518 (711)
.++.-.-+..+...-++.-++.++.. |+-. ...++-+-.......++.+++++.++.|- .. +.+..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~--pdCA-dAYILLAEEeA~Ti~Eae~l~rqAvkAgE----~~-------lg~s~ 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN--PDCA-DAYILLAEEEASTIVEAEELLRQAVKAGE----AS-------LGKSQ 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh--hhhh-HHHhhcccccccCHHHHHHHHHHHHHHHH----Hh-------hchhh
Confidence 34444445555665555555555542 2211 11122222334567788888887775431 00 00000
Q ss_pred cHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHH
Q 005161 519 LFKRVRKLFSMAKKLGL-VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFS-VSLEAYNSMLDAYGKEGQMENFKNVL 596 (711)
Q Consensus 519 ~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 596 (711)
..+..-..++....... +-..+-..+..+..+.|+.++|++.++++.+.... ........|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 00000001111111111 22333455777888999999999999999876322 23456778999999999999999999
Q ss_pred HHHHHc
Q 005161 597 RRMKET 602 (711)
Q Consensus 597 ~~~~~~ 602 (711)
.+..+.
T Consensus 319 ~kYdDi 324 (539)
T PF04184_consen 319 AKYDDI 324 (539)
T ss_pred HHhccc
Confidence 997654
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.59 E-value=1.5 Score=37.40 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=25.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHhccCChHHHHHHHHHH
Q 005161 611 YNIMIDIYGEQGWINEVVGVLTELKECGLRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEM 669 (711)
Q Consensus 611 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 669 (711)
+..+.+.|.+.||.+.|.+.+.++.+....|. ...+-.++......|++..+...+.++
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33444444444444444444444444333332 223334444444444444444444443
No 286
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.58 E-value=0.15 Score=29.08 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=15.1
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 645 SYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 645 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
+|..++.+|...|++++|+..+++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555566666666666665555
No 287
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.35 E-value=0.89 Score=40.60 Aligned_cols=97 Identities=18% Similarity=0.250 Sum_probs=71.0
Q ss_pred CchhHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----------------HHHHHH
Q 005161 536 VDVISYNTIIAAYGQ-----NKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQ----------------MENFKN 594 (711)
Q Consensus 536 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------~~~A~~ 594 (711)
.+..+|...+..+.. .+..+-....++.|.+.|+..|..+|+.|+..+-+..- -+-++.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 356667666666643 35566677778888888999999999999888876542 234778
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 005161 595 VLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELK 635 (711)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (711)
++++|...|+.||..+-..+++++ |++.-+..-+.+|.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~F---Gr~~~p~~K~~Rm~ 182 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAF---GRWNFPTKKVKRML 182 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHh---ccccccHHHHHHHH
Confidence 888888888999988888888887 44557766666654
No 288
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.98 E-value=1.1 Score=40.84 Aligned_cols=76 Identities=13% Similarity=0.065 Sum_probs=51.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhhHHHHH
Q 005161 506 TLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQF-----DGFSVSLEAYNSML 580 (711)
Q Consensus 506 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~ 580 (711)
++..++..+...|+.+.+...++.+....|-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4455666777777777777777777777777777777777777777777777777776654 25555555544443
Q ss_pred H
Q 005161 581 D 581 (711)
Q Consensus 581 ~ 581 (711)
.
T Consensus 235 ~ 235 (280)
T COG3629 235 E 235 (280)
T ss_pred H
Confidence 3
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.94 E-value=0.22 Score=28.91 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=16.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHH
Q 005161 645 SYNTLIKAYGIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 645 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 670 (711)
+|+.|..+|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666777777777777777777744
No 290
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.82 E-value=14 Score=38.68 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHHcCChHHHHHHHHHHHh
Q 005161 379 FTEAEKLYLNLKSSGIRLDLIAFTVVVRM-----YVKAGSLKDACAVLETMEK 426 (711)
Q Consensus 379 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~ 426 (711)
...+...++...+.| +...-..+..+ +....+++.|+.+|+....
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 456677777766654 22222222222 2234567777777776633
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.81 E-value=0.15 Score=29.16 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=20.9
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHhcCCHHHHH
Q 005161 527 FSMAKKLGLVDVISYNTIIAAYGQNKNLESMS 558 (711)
Q Consensus 527 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 558 (711)
|++..+..|.++.+|..+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555666666777777777777777766664
No 292
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.80 E-value=5.1 Score=33.48 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=69.1
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC--CHHHHHHHHHHHH
Q 005161 558 SSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQG--WINEVVGVLTELK 635 (711)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 635 (711)
.++++.+.+.+++|+...+..+++.+.+.|++..-..++. .++-+|.......+-.+.... -..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3455666667778888888888888888877655444333 333444433322221111111 1233444444433
Q ss_pred HCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHHHHH
Q 005161 636 ECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWM 704 (711)
Q Consensus 636 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~m 704 (711)
. .+..++..+...|++-+|+++.+.... -+......++.+..+.++...=..+++-.
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 245566777788888888877766422 12222344555665555544433444333
No 293
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.77 E-value=8.7 Score=36.10 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHCCCCCChHhHHHHH
Q 005161 626 EVVGVLTELKECGLRPDLCSYNTLI 650 (711)
Q Consensus 626 ~A~~~~~~~~~~~~~p~~~~~~~l~ 650 (711)
++.++++.+.+.|+++....|..++
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHHH
Confidence 4455555555555554444444433
No 294
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.69 E-value=5.3 Score=33.39 Aligned_cols=33 Identities=6% Similarity=0.186 Sum_probs=16.0
Q ss_pred HHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHH
Q 005161 38 FHMMLECDVQPNVATFGMLMGLYKKSWNVEEAE 70 (711)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 70 (711)
.+.+.+.+++|+...+..+++.+.+.|++..-.
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ 49 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH 49 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 334444445555555555555555555444333
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.54 E-value=0.26 Score=28.00 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=12.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 646 YNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 646 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
|..+..+|...|++++|++.+++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444444455555555555554444
No 296
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.43 E-value=12 Score=36.97 Aligned_cols=78 Identities=17% Similarity=0.093 Sum_probs=49.7
Q ss_pred CCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCchhHHHH
Q 005161 11 AKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSW-NVEEAEFAFNQMRKLGLVCESAYSA 89 (711)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~ 89 (711)
+..|+..|...+.-+-+.+.+.+...+|..|+... +.++..|..........+ +++.|..+|.+..+.+|.++..|..
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 33467777777776666666777777777777754 445555555444443333 3777777777777777776555433
No 297
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.39 E-value=21 Score=39.61 Aligned_cols=24 Identities=8% Similarity=-0.114 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcchHHHHHHHHHH
Q 005161 680 TYTNMITALQRNDKFLEAIKWSLW 703 (711)
Q Consensus 680 ~~~~l~~~~~~~~~~~~A~~~~~~ 703 (711)
....|+.++.+.|..+.|.++-+.
T Consensus 1186 E~~~Ll~~l~~~g~~eqa~~Lq~~ 1209 (1265)
T KOG1920|consen 1186 ELKRLLEVLVTFGMDEQARALQKA 1209 (1265)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHH
Confidence 345677778888877777665443
No 298
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.21 E-value=6.6 Score=33.40 Aligned_cols=88 Identities=13% Similarity=0.021 Sum_probs=42.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhcc
Q 005161 581 DAYGKEGQMENFKNVLRRMKETSCTFDHY----TYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIA 656 (711)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 656 (711)
..+..+|++++|...++..... +.|.. .--.|.......|.+++|+..++...+.+. .......-..++...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 3345556666666666655532 11111 111223444555666666666655443221 112222334556666
Q ss_pred CChHHHHHHHHHHHHc
Q 005161 657 GMVEDAVGLVKEMREN 672 (711)
Q Consensus 657 g~~~~A~~~~~~~~~~ 672 (711)
|+-++|...|+...+.
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 6666666666666553
No 299
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.19 E-value=0.35 Score=28.04 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 87 YSAMITIYTRLSLYEKAEEVIRLI 110 (711)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~~~~ 110 (711)
|..|..+|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
No 300
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.13 E-value=11 Score=35.56 Aligned_cols=130 Identities=14% Similarity=0.264 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHHhc--c----CcHHHHHHHHHHHHHcCC----CchhHHHHHHHHHHhcCCH-
Q 005161 486 DELSRVFDEMLQHGFTPNIITLNVMLDIYGK--A----KLFKRVRKLFSMAKKLGL----VDVISYNTIIAAYGQNKNL- 554 (711)
Q Consensus 486 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~- 554 (711)
++.+.+++.+.+.|+..+..++-+....... . ....++..+++.|++..+ ++..++..++.. ..+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4455667777777776665554442222211 1 225677888888888777 344455555433 33333
Q ss_pred ---HHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005161 555 ---ESMSSTVQEMQFDGFSVSLE--AYNSMLDAYGKEGQ--MENFKNVLRRMKETSCTFDHYTYNIMIDI 617 (711)
Q Consensus 555 ---~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (711)
+.+..+|+.+.+.|+..+-. ..+.++..+..... ...+.++++.+.+.|+++....|..+.-.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 45667788888877665433 23333332222111 45778888888888888887777766543
No 301
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.96 E-value=2.4 Score=35.41 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHH
Q 005161 661 DAVGLVKEMRENGIEPDKITYTNMIT 686 (711)
Q Consensus 661 ~A~~~~~~~~~~~~~p~~~~~~~l~~ 686 (711)
+|...|++..+ ..|+...|..-+.
T Consensus 98 kA~~~FqkAv~--~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 98 KATEYFQKAVD--EDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCcHHHHHHHH
Confidence 33333333333 4455544444333
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.62 E-value=6.8 Score=32.30 Aligned_cols=51 Identities=6% Similarity=-0.232 Sum_probs=26.0
Q ss_pred ccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 516 KAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQF 566 (711)
Q Consensus 516 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 566 (711)
+.++.+++..++..+.-..|..+..-..-...+...|+|.+|+.+++++..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 345555666666555555443333333334444555555555555555543
No 303
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.53 E-value=15 Score=36.03 Aligned_cols=66 Identities=11% Similarity=0.005 Sum_probs=49.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 536 VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSV---SLEAYNSMLDAYGKEGQMENFKNVLRRMKE 601 (711)
Q Consensus 536 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (711)
....+|..++..+.+.|.++.|...+..+...+... .+.............|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355678888888899999999998888887654222 344455556677788888999988888876
No 304
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=20 Score=37.40 Aligned_cols=120 Identities=13% Similarity=0.013 Sum_probs=51.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCCh
Q 005161 582 AYGKEGQMENFKNVLRRMKETSCTFDHY--TYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMV 659 (711)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 659 (711)
++..-|+.++|..+++++.... .|-.. -.-.+..+|+-.|+-....+++.-.... ..-|..-...+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3444566666666666666431 11111 1122334455555554444444443331 222333344444444455555
Q ss_pred HHHHHHHHHHHHcCCCCCc--chHHHHHHHHHhcchHHHHHHHHHHHH
Q 005161 660 EDAVGLVKEMRENGIEPDK--ITYTNMITALQRNDKFLEAIKWSLWMK 705 (711)
Q Consensus 660 ~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~m~ 705 (711)
+....+.+-+.+. ..|-. .+-..|.-+|.-.|. .+|..+++-|.
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~ 633 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLT 633 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhh
Confidence 5555555444432 23321 122233333433442 44555555443
No 305
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.24 E-value=4.7 Score=33.80 Aligned_cols=110 Identities=19% Similarity=0.187 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHhHcCCCCCHhhHHHHHHH---HHcc-------CCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC-
Q 005161 31 VELGAKWFHMMLECDVQPNVATFGMLMGL---YKKS-------WNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSL- 99 (711)
Q Consensus 31 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~-------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 99 (711)
|+.|.+-++.-...+ +.|...++.=..+ +++. ..+++|..-|+.+...+|....++..+.++|...+.
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 455666666544444 4444444322222 2222 235667777788888888887888888877766542
Q ss_pred ----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005161 100 ----------YEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 100 ----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 149 (711)
+++|.+.|+...+.+ |+...|..-+.... +|-+++.++.+.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~--P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDED--PNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 444555555544433 56666665555442 3555666665543
No 306
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.07 E-value=1.4 Score=40.02 Aligned_cols=103 Identities=13% Similarity=0.125 Sum_probs=54.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChh
Q 005161 393 GIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKD--IEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQE 470 (711)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 470 (711)
|.+.+..+...++..-....++++++..+-.+..... ..|+. +-...++.+ ..-++++++.++..=+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 4444555555555555556677778777777743211 11111 111122222 2224456666666656666666666
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 471 LYDCVINCCARALPIDELSRVFDEMLQ 497 (711)
Q Consensus 471 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 497 (711)
+++.+++.+.+.+++.+|.++.-.+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 666666666666666666665555543
No 307
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.05 E-value=12 Score=34.24 Aligned_cols=134 Identities=9% Similarity=-0.001 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHhcCC--HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005161 64 WNVEEAEFAFNQMRKL--GLVCESAYSAMITIYTRLSL--YEKAEEVIRLIRE-DKVVPNLENWLVMLNAYSQQGKLEEA 138 (711)
Q Consensus 64 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 138 (711)
.-+.+|+.+|+..... =..++.....+++......+ ...--++.+-+.. .+..++..+...++..++..+++.+.
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 3445555555532211 12234455555555554211 2222233333322 23445666777788888888888888
Q ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHhhccCChHHHHHHHHH-----HHhcCCCCChhhHHHHHH
Q 005161 139 ELVLVSMREA-GFSPNIVAYNTLMTGYGKVSNMEAAQRLFLS-----IKDVGLEPDETTYRSMIE 197 (711)
Q Consensus 139 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~ 197 (711)
.+++...... ++..|...|...++.....|+..-...+.++ +.+.++..+...-..+-.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 8888877665 5566777888888888888888777777664 344455444444444433
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.73 E-value=0.66 Score=26.27 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=26.8
Q ss_pred chHHHHHHHHHhcchHHHHHHHHHHHHHhCcC
Q 005161 679 ITYTNMITALQRNDKFLEAIKWSLWMKQIGLQ 710 (711)
Q Consensus 679 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 710 (711)
..+..+..++...|++++|++.+++..+...+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 35778899999999999999999999887654
No 309
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.53 E-value=6.1 Score=29.33 Aligned_cols=45 Identities=9% Similarity=0.043 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 592 FKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 592 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
..+-++.+....+.|++....+.+.+|.+.+|+..|.++|+-++.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444445556666666666666666666666666665554
No 310
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.34 E-value=0.99 Score=25.58 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 87 YSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
|..++.+|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444444444444444444443
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.12 E-value=2.7 Score=42.11 Aligned_cols=81 Identities=17% Similarity=0.076 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHH
Q 005161 292 NLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMID 371 (711)
Q Consensus 292 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 371 (711)
+..-|..|.++....|++..|.+.|.... -|..|+-.+...|+.+....+-....+.| +. |...-
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~-----N~AF~ 729 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQG-KN-----NLAFL 729 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhc-cc-----chHHH
Confidence 44556777777777777777776665543 24444555555555544444444433333 11 11222
Q ss_pred HHHccCCHHHHHHHHH
Q 005161 372 TYSVMGMFTEAEKLYL 387 (711)
Q Consensus 372 ~~~~~~~~~~a~~~~~ 387 (711)
++...|+++++.+++.
T Consensus 730 ~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3445566666655543
No 312
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=88.98 E-value=24 Score=34.41 Aligned_cols=80 Identities=10% Similarity=-0.003 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHH--HHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVE--EAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
-.+++..|...|++.-|..-+.++=.+. -.......|+.+....++-+ .|--++..+-..-..+...+..++..+.
T Consensus 53 ~~sii~eyfstgdv~vaa~dl~elg~se--yhpyfvkrlvsmamdrhdkekemasvlls~lyadvi~p~qir~gf~~ll~ 130 (645)
T KOG0403|consen 53 AVSIIDEYFSTGDVVVAASDLKELGSSE--YHPYFVKRLVSMAMDRHDKEKEMASVLLSALYADVIDPDQIRDGFIRLLE 130 (645)
T ss_pred HHHHHHHHccCCCchhhHHHHHHhcccc--ccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3578899999999988765554442221 12233345555555444433 3444444444433344556666666665
Q ss_pred hcCC
Q 005161 96 RLSL 99 (711)
Q Consensus 96 ~~~~ 99 (711)
..++
T Consensus 131 s~dd 134 (645)
T KOG0403|consen 131 SADD 134 (645)
T ss_pred hccc
Confidence 5554
No 313
>PRK09687 putative lyase; Provisional
Probab=88.71 E-value=21 Score=33.41 Aligned_cols=179 Identities=8% Similarity=-0.033 Sum_probs=89.9
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHH
Q 005161 47 QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLY----EKAEEVIRLIREDKVVPNLENW 122 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 122 (711)
.+|..+....+..+...|..+.. ..+..+.... +.......+.++.+.|.. .++...+..+...+ ++....
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~-~~l~~ll~~~--d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~VR 108 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVF-RLAIELCSSK--NPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACVR 108 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHH-HHHHHHHhCC--CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHHH
Confidence 45666666677777666653332 3333332221 234455556666666653 45666666654433 444455
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 005161 123 LVMLNAYSQQGKL-----EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIE 197 (711)
Q Consensus 123 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 197 (711)
...+.++...+.- ..+...+..... .++..+-...+.++++.++ ..+...+-.+.+ .+|...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 4555555544321 223333333333 3355555566666666665 345555555444 244444444455
Q ss_pred HHHhcC-CHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCH
Q 005161 198 GWGRAG-NYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDE 240 (711)
Q Consensus 198 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (711)
++.+.+ +.+.+...+..+.. .++..+-...+.++.+.++.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~ 222 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK 222 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh
Confidence 554432 13345555555543 23555555566666666663
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.69 E-value=12 Score=30.43 Aligned_cols=52 Identities=13% Similarity=0.064 Sum_probs=28.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 63 SWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 63 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
.+++++++.+++.+.-..|.....-..-+..+...|++.+|..+|+.+...+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5566666666666655555544433344444555566666666666555543
No 315
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.54 E-value=3.7 Score=30.03 Aligned_cols=43 Identities=9% Similarity=0.020 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 005161 593 KNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELK 635 (711)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (711)
.+-++.+......|++....+.+.+|.+.+|+.-|.++|+-.+
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444445555555555555555555555555555444
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.32 E-value=6 Score=36.28 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=58.4
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChH
Q 005161 568 GFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET---SCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLC 644 (711)
Q Consensus 568 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 644 (711)
|.+.+..+...++..-....+++.+...+-++... -..|+... ...+..|. .-+.++++.++..=+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 44445555555555555556666666666655431 11121111 11222222 234557777776667777777777
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 645 SYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 645 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
+.+.++..+.+.+++.+|..+...|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777777777666654
No 317
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.93 E-value=0.81 Score=25.93 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=13.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 646 YNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 646 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
|..+...|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555555555555555555544
No 318
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.56 E-value=2.1 Score=39.45 Aligned_cols=92 Identities=14% Similarity=-0.014 Sum_probs=62.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKL 135 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 135 (711)
-.+-|.++|.+++|..-+.+.....|.+.+.+..-..+|.+...+..|..-.+..+..+-. -..+|...+.+-...|..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhH
Confidence 3455667777777777777777777766667777777777777777777766665543311 234566666666667777
Q ss_pred HHHHHHHHHHHHc
Q 005161 136 EEAELVLVSMREA 148 (711)
Q Consensus 136 ~~a~~~~~~~~~~ 148 (711)
.+|.+-.+..++.
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 7777777777765
No 319
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.46 E-value=0.046 Score=45.07 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=22.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 126 LNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 126 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
+..+.+.+..+.+...++.+...+...+....+.++..|++.++.+...+.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3444444444444444454444333334444455555555444444444443
No 320
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.00 E-value=15 Score=32.52 Aligned_cols=82 Identities=12% Similarity=-0.038 Sum_probs=38.4
Q ss_pred hcCChHHHHHHHHHHhHcCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 005161 27 KRGCVELGAKWFHMMLECDVQPNV-ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEE 105 (711)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 105 (711)
-...+..|...|...+.. .|+. .-|..-+-++.+..+++.+..--.+..+..+........+..++.....+.+|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 334445555555554443 2333 2333334444445555555554444444444444444445555555555555555
Q ss_pred HHHHH
Q 005161 106 VIRLI 110 (711)
Q Consensus 106 ~~~~~ 110 (711)
.+++.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 55443
No 321
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.45 E-value=26 Score=32.08 Aligned_cols=44 Identities=16% Similarity=0.057 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005161 379 FTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETM 424 (711)
Q Consensus 379 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 424 (711)
...|+++|..+..+. -...+-..++.++....+..+|...+...
T Consensus 149 s~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTt 192 (361)
T COG3947 149 SRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTT 192 (361)
T ss_pred hhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHH
Confidence 367788887777652 22334455666677777777766665543
No 322
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.40 E-value=6.9 Score=33.86 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 005161 19 NTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLV 82 (711)
Q Consensus 19 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 82 (711)
+..++.+.+.+...+|+...+.-++.. +.|......+++.||-.|+++.|..-++.+-+..+.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 344555555556666666555555543 444555555566666666666666555555554443
No 323
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.03 E-value=49 Score=34.81 Aligned_cols=184 Identities=18% Similarity=0.106 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHH--HHH-HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcC--
Q 005161 66 VEEAEFAFNQMRKLGLVCESAYSAM--ITI-YTRLSLYEKAEEVIRLIRE-------DKVVPNLENWLVMLNAYSQQG-- 133 (711)
Q Consensus 66 ~~~A~~~~~~~~~~~~~~~~~~~~l--~~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-- 133 (711)
...|.+.++...+.+.......... ..+ +....+.+.|+..|+.+.. .+ ...+...+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4678888888877765432222222 222 4566888999999988766 33 2234556666666643
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH--hcCCHHH
Q 005161 134 ---KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK-VSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWG--RAGNYRE 207 (711)
Q Consensus 134 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~ 207 (711)
+.+.|..++......|. |+....-..+..... ..+...|.++|....+.|. ++...+..+.-... ...+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHH
Confidence 56778888888888763 344333222222222 3467888888888887764 23222222221111 2346778
Q ss_pred HHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 005161 208 AKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ 256 (711)
Q Consensus 208 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 256 (711)
|..++.+.-+.| .|........+..+.. +..+.+...+..+.+.+..
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 888888888876 3222222222333333 6666666666665555543
No 324
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.63 E-value=26 Score=38.21 Aligned_cols=116 Identities=10% Similarity=0.082 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHH--
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLIREDK--VVP-NLENWLVMLNAYSQQGKL--EEAELVLVSMREAGFSPNIVAYN-- 158 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 158 (711)
-|..|+..|...|+.++|++++.+..+.. ..+ ....+..+++-+-+.+.. +-+.+.-+...+........++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 36677777777777777777777766532 111 112233344444444443 44444444444332111111110
Q ss_pred ----------HHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 005161 159 ----------TLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGR 201 (711)
Q Consensus 159 ----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 201 (711)
.-+-.|.+....+-+...++.+....-.++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1222355666777777888877765545566666777776654
No 325
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.59 E-value=27 Score=31.43 Aligned_cols=207 Identities=13% Similarity=0.140 Sum_probs=129.7
Q ss_pred CCCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCC
Q 005161 392 SGIRLDLIAFTVVVRMY-VKAGSLKDACAVLETMEKQKDIEPD--AYLYCDMLRIYQQCGMLDKLSYLYYKILK---SGI 465 (711)
Q Consensus 392 ~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~ 465 (711)
.+..||...-|..-..- .+...+++|+.-|+...+..|-+.+ -.....++....+.+++++..+.+.+++. +.+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34567766655443221 2445799999999988665543322 34556778889999999999999988753 222
Q ss_pred --CCChhhHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC--
Q 005161 466 --TWNQELYDCVINCCARALPIDELSRVFDEMLQ-----HGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLV-- 536 (711)
Q Consensus 466 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 536 (711)
..+..+.+.+++..+...+.+-..++++.-++ .+-..-..+-..+...|...+.+.+..+++.++.+....
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 34566788888877777777777776665442 111111223355677788888888888888887765441
Q ss_pred ---c-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHH-----HHhcCCHHHHHHHHHHH
Q 005161 537 ---D-------VISYNTIIAAYGQNKNLESMSSTVQEMQFDG-FSVSLEAYNSMLDA-----YGKEGQMENFKNVLRRM 599 (711)
Q Consensus 537 ---~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~ 599 (711)
| ...|..-++.|...++-.+...+|++..... .-|.+... -.++- ..+.|++++|..-|=++
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHH
Confidence 1 2456666777888888777777887765432 12333222 22332 34567787776544443
No 326
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.55 E-value=35 Score=32.77 Aligned_cols=99 Identities=10% Similarity=-0.035 Sum_probs=57.5
Q ss_pred CCCHhhHHHHHHHHHcc---C---------CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 47 QPNVATFGMLMGLYKKS---W---------NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~---g---------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
|.|+.+|..++..--.. + -.+.-+.+++++.+.+|.+...+..++..+.+....++..+.++.+....
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 55677776666432111 1 13345567777777777666777777777777777777777777777655
Q ss_pred CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 005161 115 VVPNLENWLVMLNAYSQ---QGKLEEAELVLVSMR 146 (711)
Q Consensus 115 ~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 146 (711)
+. +...|...+..... .-.++....+|.+.+
T Consensus 96 ~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 96 PG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 33 45556555554433 223445555555444
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.14 E-value=2 Score=25.68 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=19.3
Q ss_pred HhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 644 CSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 644 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777777653
No 328
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.05 E-value=8.5 Score=28.64 Aligned_cols=44 Identities=9% Similarity=0.209 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 005161 453 LSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEML 496 (711)
Q Consensus 453 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 496 (711)
..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.+.
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
No 329
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.03 E-value=14 Score=33.67 Aligned_cols=58 Identities=7% Similarity=-0.055 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 88 SAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMR 146 (711)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 146 (711)
+.....|..+|.+.+|.++.+..+.-++- +...+-.++..++..|+--.|..-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445566666666666666665554432 44455556666666666555544444443
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.94 E-value=1.2 Score=24.82 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=5.6
Q ss_pred ccCChHHHHHHHHHH
Q 005161 655 IAGMVEDAVGLVKEM 669 (711)
Q Consensus 655 ~~g~~~~A~~~~~~~ 669 (711)
+.|++++|.+.++++
T Consensus 12 ~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 12 KLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHH
Confidence 333333333333333
No 331
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.69 E-value=12 Score=33.13 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=13.9
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 683 NMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 683 ~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
.++....+.|++++|.+|+.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4444555566666666666655443
No 332
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.58 E-value=57 Score=34.36 Aligned_cols=120 Identities=10% Similarity=-0.022 Sum_probs=61.9
Q ss_pred HhccCcHHHHHHHHHHHHHcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 005161 514 YGKAKLFKRVRKLFSMAKKLGLV--DVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMEN 591 (711)
Q Consensus 514 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 591 (711)
+...|+.++|..+.+++....-| ......+++.+|+..|+......++.-.... ...|..-...+.-++.-..+++.
T Consensus 511 L~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhh
Confidence 34456666777777766554322 2223344566677777766655555544432 23333333333344445566666
Q ss_pred HHHHHHHHHHcCCCCCHH--HHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 592 FKNVLRRMKETSCTFDHY--TYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 592 A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
...+.+-+.+. ..|... +-.+|.-+|+-.|+ .+|+.+++-|..
T Consensus 590 ~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 590 LPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred chHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 66666666553 334333 22233334444443 567777777654
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.48 E-value=10 Score=32.69 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHH---cCCCCCcchHHHHHHHHHhcchHHHH
Q 005161 658 MVEDAVGLVKEMRE---NGIEPDKITYTNMITALQRNDKFLEA 697 (711)
Q Consensus 658 ~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~~~~~~A 697 (711)
+.++++.++.+..+ .+-.+|+..+..|+..+.+.|+++.|
T Consensus 155 D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 155 DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444432 11133444444455555555554444
No 334
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.48 E-value=14 Score=27.21 Aligned_cols=61 Identities=11% Similarity=-0.013 Sum_probs=29.2
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 005161 73 FNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVP-NLENWLVMLNAYSQQG 133 (711)
Q Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 133 (711)
++.....+|.+..+...+...+...|++++|++.+-.+.+.+... +...-..++..+.-.|
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 334444555555566666666666666666666666655544332 2233334444443333
No 335
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.37 E-value=6.1 Score=36.65 Aligned_cols=96 Identities=18% Similarity=0.091 Sum_probs=73.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 005161 89 AMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVS 168 (711)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (711)
--.+-|.++|+|++|+..|..-....+. |+.++.....+|.+..++..|..-....+..+ +.-+..|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999987765533 77888888999999999998887777776653 223445666666656678
Q ss_pred ChHHHHHHHHHHHhcCCCCC
Q 005161 169 NMEAAQRLFLSIKDVGLEPD 188 (711)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~ 188 (711)
+..+|.+-++..... +|.
T Consensus 180 ~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred hHHHHHHhHHHHHhh--Ccc
Confidence 899999999988874 455
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.30 E-value=2.2 Score=25.50 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=23.9
Q ss_pred chHHHHHHHHHhcchHHHHHHHHHHHHH
Q 005161 679 ITYTNMITALQRNDKFLEAIKWSLWMKQ 706 (711)
Q Consensus 679 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 706 (711)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998754
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.28 E-value=2.8 Score=23.31 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCc
Q 005161 681 YTNMITALQRNDKFLEAIKWSLWMKQIGL 709 (711)
Q Consensus 681 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 709 (711)
+..+..++.+.|++++|.+.++++.+.-+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 45678889999999999999999988754
No 338
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.25 E-value=66 Score=34.83 Aligned_cols=224 Identities=10% Similarity=0.018 Sum_probs=115.0
Q ss_pred HccCCHHHHHHHHHHHHhCCCCcc----H---HHHHHHHH-HHhccCcHHHHHHHHHHHHHcCC-----CchhHHHHHHH
Q 005161 480 ARALPIDELSRVFDEMLQHGFTPN----I---ITLNVMLD-IYGKAKLFKRVRKLFSMAKKLGL-----VDVISYNTIIA 546 (711)
Q Consensus 480 ~~~~~~~~a~~~~~~~~~~~~~~~----~---~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~ 546 (711)
....++.+|..+..++...--.|+ . ..++.+-. .....|+++.|.++.+.....-+ +....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 345667777777776654211111 1 12222221 22357888888888887766554 34556677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhh---HHHHH--HHHHhcCCH--HHHHHHHHHHHHc--CCCC----CHHHHHH
Q 005161 547 AYGQNKNLESMSSTVQEMQFDGFSVSLEA---YNSML--DAYGKEGQM--ENFKNVLRRMKET--SCTF----DHYTYNI 613 (711)
Q Consensus 547 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~g~~--~~A~~~~~~~~~~--~~~~----~~~~~~~ 613 (711)
+..-.|++++|..+..+..+..-.-+... |..+. ..+...|+. ++....+...... .-.| -..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 78888999988887776655421222222 22222 234455632 2333333332221 0111 1223344
Q ss_pred HHHHHhh-cCCHHHHHHHHHHHHHCCCCCChHh--HHHHHHHHhccCChHHHHHHHHHHHHcCCCC----CcchHHHHHH
Q 005161 614 MIDIYGE-QGWINEVVGVLTELKECGLRPDLCS--YNTLIKAYGIAGMVEDAVGLVKEMRENGIEP----DKITYTNMIT 686 (711)
Q Consensus 614 l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~ 686 (711)
+..++.+ .+.-.++..-++--......|-... +..|+.++...|+.++|...+.++......+ +.......++
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 4444443 1222233333332222222222222 2367788889999999999988887543333 2222223333
Q ss_pred HH--HhcchHHHHHHHHHH
Q 005161 687 AL--QRNDKFLEAIKWSLW 703 (711)
Q Consensus 687 ~~--~~~~~~~~A~~~~~~ 703 (711)
.. ...|+.++|..++.+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 32 456888888777665
No 339
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.07 E-value=32 Score=35.10 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=50.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 005161 550 QNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVG 629 (711)
Q Consensus 550 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 629 (711)
+.|+.+.|.++..+. .+..-|..|.++....|++..|.+.|.+... |..|+-.+...|+.+....
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 445555555544432 2334455666666666666666666655543 3344444555555554444
Q ss_pred HHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHH
Q 005161 630 VLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKE 668 (711)
Q Consensus 630 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 668 (711)
+-+...+.|. .|.-..+|...|+++++.+++.+
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 4444444331 22333455566777766666554
No 340
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.93 E-value=15 Score=27.10 Aligned_cols=44 Identities=9% Similarity=0.208 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 005161 453 LSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEML 496 (711)
Q Consensus 453 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 496 (711)
+.+-++.+....+.|++.+..+.+++|.+.+++..|.++|+-+.
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444433
No 341
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=83.91 E-value=42 Score=32.27 Aligned_cols=117 Identities=15% Similarity=0.066 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh---cCCHHHHHHHHH
Q 005161 556 SMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGE---QGWINEVVGVLT 632 (711)
Q Consensus 556 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 632 (711)
.-+.+++++.+.+ +.+...+..++..+.+..+.+...+-|+++... .+-+...|...++.... .-.++....+|.
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~-~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK-NPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3445666655553 445555666666666666666666667776654 13355566666654433 123445555554
Q ss_pred HHHH------CCC------CCC--h---HhHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 005161 633 ELKE------CGL------RPD--L---CSYNTLIKAYGIAGMVEDAVGLVKEMRENGI 674 (711)
Q Consensus 633 ~~~~------~~~------~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 674 (711)
+.++ .+. .++ . .++..+..-+..+|..+.|+.+++-+.+.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 4432 111 011 0 1223333444578888888888888887544
No 342
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.36 E-value=72 Score=34.57 Aligned_cols=226 Identities=8% Similarity=0.023 Sum_probs=117.2
Q ss_pred HHHHhcCCHHHHHHHHHhhhhcCCCcc----Hh---hHHHHHH-HHHccCChhhHHHHHHHHhhc----CCCCcHHHHHH
Q 005161 301 MAYVKHGLIDDAMKVLGDKRWKDTVFE----DN---LYHLLIC-SCKDSGHLANAVKIYSHMHIC----DGKPNLHIMCT 368 (711)
Q Consensus 301 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~---~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 368 (711)
.......++++|..++.+....-..|+ .. .++.+-. .....|++++|.++.+..... -..+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 334557888999888877654422221 11 2333322 334578889998888777543 12334455666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHH--HHHHHcCC--hHHHHHHHHHHHhcCCCC-----CcHHH
Q 005161 369 MIDTYSVMGMFTEAEKLYLNLKSSGIRLDL---IAFTVVV--RMYVKAGS--LKDACAVLETMEKQKDIE-----PDAYL 436 (711)
Q Consensus 369 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~--~~~~~~~~--~~~A~~~~~~~~~~~~~~-----~~~~~ 436 (711)
+..+..-.|++++|..+.....+..-..+. ..|..+. ..+...|. ..+....|.......... +-..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 667777889999998888776654222232 2333332 23445663 233333344332221111 12233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCChhhH--HHHHHHHHccCCHHHHHHHHHHHHhCCC----CccHHH
Q 005161 437 YCDMLRIYQQCGMLDKLSYLYYKILKSG----ITWNQELY--DCVINCCARALPIDELSRVFDEMLQHGF----TPNIIT 506 (711)
Q Consensus 437 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~ 506 (711)
+..+..++.+ .+.+..-.....+.+ ..+-.... ..++......|+.++|...++++..... .++...
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 4444444444 333332222222221 22222222 2566777788999999988888775322 222222
Q ss_pred HHHHHH--HHhccCcHHHHHHHHHH
Q 005161 507 LNVMLD--IYGKAKLFKRVRKLFSM 529 (711)
Q Consensus 507 ~~~l~~--~~~~~~~~~~a~~~~~~ 529 (711)
....+. .....|+.+.+.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 222222 23457888777776655
No 343
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=82.98 E-value=4.2 Score=39.81 Aligned_cols=108 Identities=15% Similarity=0.081 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhH-HHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 19 NTLIYACNKRGCVELGAKWFHMMLECDVQPNVATF-GMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL 97 (711)
Q Consensus 19 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (711)
-.-+......+.++.|..++.++++. .||...| ..-..++.+.+++..|+.=+.++.+.+|.....|..-..++.+.
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 34556677788999999999999986 4554444 44447788999999999999999998887667777777777888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYS 130 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (711)
+.+.+|+..|+.... +.|+..-....+.-|-
T Consensus 86 ~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 888888888887766 4466666666665554
No 344
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.72 E-value=0.75 Score=37.82 Aligned_cols=85 Identities=13% Similarity=0.228 Sum_probs=56.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCC
Q 005161 579 MLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGM 658 (711)
Q Consensus 579 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 658 (711)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4566666777788888888887655455677777888888888777777776661 112333456777777888
Q ss_pred hHHHHHHHHHHH
Q 005161 659 VEDAVGLVKEMR 670 (711)
Q Consensus 659 ~~~A~~~~~~~~ 670 (711)
+++|.-++.++-
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 888887777754
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.54 E-value=12 Score=32.34 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=8.5
Q ss_pred ChhhHHHHHHHHHhcCCHHH
Q 005161 572 SLEAYNSMLDAYGKEGQMEN 591 (711)
Q Consensus 572 ~~~~~~~l~~~~~~~g~~~~ 591 (711)
++..+.+|+..+.+.|+++.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 34444444444444444443
No 346
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.45 E-value=10 Score=32.96 Aligned_cols=75 Identities=9% Similarity=0.099 Sum_probs=46.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC---CchhHHHHHHHH
Q 005161 472 YDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL---VDVISYNTIIAA 547 (711)
Q Consensus 472 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~ 547 (711)
.+..++.+.+.+..++++...++-++.+ +.+...-..+++.++-.|++++|..-++..-+..+ +....|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3444556666777777777777666553 33444555567777777777777777766655554 344455555543
No 347
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.44 E-value=3.9 Score=22.99 Aligned_cols=27 Identities=37% Similarity=0.428 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
+|..+..+|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666666666666666666666554
No 348
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.13 E-value=26 Score=28.54 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=10.4
Q ss_pred HHhcCCHHHHHHHHHhhhhcC
Q 005161 303 YVKHGLIDDAMKVLGDKRWKD 323 (711)
Q Consensus 303 ~~~~g~~~~a~~~~~~~~~~~ 323 (711)
+...|++++|..+|+++...+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHcCCHHHHHHHHHhhhccC
Confidence 344555555555555554443
No 349
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.25 E-value=13 Score=37.51 Aligned_cols=147 Identities=16% Similarity=0.082 Sum_probs=92.1
Q ss_pred CchHhHHHHHHHHHhc--CChHHHHHHHHHHhHcCCCCCHhhHHH--HHHHHH-ccCCHHHHHHHHHHHHHcCCCc-hhH
Q 005161 13 LNFQLFNTLIYACNKR--GCVELGAKWFHMMLECDVQPNVATFGM--LMGLYK-KSWNVEEAEFAFNQMRKLGLVC-ESA 86 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~-~~g~~~~A~~~~~~~~~~~~~~-~~~ 86 (711)
|+..+...++...... -.-+-|..+|..|.. |+...|.. +...|- ..|+...|.+-+..+....|.. ...
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~----~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK----PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC----CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 3444444444433322 122445555655543 33333432 334443 4688888888887776655543 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 005161 87 YSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYG 165 (711)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (711)
...|.+.+.+.|..-.|-.++.+.+... ...+-++..+.+++....+++.|.+.|.+..+.. +.++..-+.|...-|
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 6677778888888888888888776654 2245567777888888899999999998888764 335666666665444
No 350
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.07 E-value=83 Score=33.71 Aligned_cols=184 Identities=14% Similarity=0.092 Sum_probs=106.2
Q ss_pred HHHHHHHHHhH-cCCCCC--HhhHHHHHHHHH-ccCCHHHHHHHHHHHHHcCCCc--h----hHHHHHHHHHHhcCCHHH
Q 005161 33 LGAKWFHMMLE-CDVQPN--VATFGMLMGLYK-KSWNVEEAEFAFNQMRKLGLVC--E----SAYSAMITIYTRLSLYEK 102 (711)
Q Consensus 33 ~a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~--~----~~~~~l~~~~~~~~~~~~ 102 (711)
.|+++++-+.+ ..++|. ..++..+..+|. ...+++.|+..+.+.......+ . .+-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34566666663 222222 334556666665 6788999999999875443222 1 23445677777777766
Q ss_pred HHHHHHHHHhCCCC----CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHh--hccCChHH
Q 005161 103 AEEVIRLIREDKVV----PNLENWLVM-LNAYSQQGKLEEAELVLVSMREAG---FSPNIVAYNTLMTGY--GKVSNMEA 172 (711)
Q Consensus 103 a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~~~ 172 (711)
|...+++..+.-.. +-...+..+ +..+...+++..|.+.++.+...- ..|...++..++.+. .+.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 88888876553211 122233333 333333478999998888876542 244455555555443 34566677
Q ss_pred HHHHHHHHHhcC---------CCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHh
Q 005161 173 AQRLFLSIKDVG---------LEPDETTYRSMIEGW--GRAGNYREAKWYYKELKH 217 (711)
Q Consensus 173 a~~~~~~~~~~~---------~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~ 217 (711)
+.+..+++.... -.|...+|..+++.+ ...|++..+.+.++++.+
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777776663321 123555666666554 456777777666665543
No 351
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=81.06 E-value=46 Score=30.74 Aligned_cols=62 Identities=5% Similarity=0.090 Sum_probs=30.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 005161 536 VDVISYNTIIAAYGQNKNLESMSSTVQEMQFD-GFSVSLEAYNSMLDAYGKEGQMENFKNVLR 597 (711)
Q Consensus 536 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 597 (711)
++..+...++..++..+++.+-.++++..... +...|...|..++......|+..-..++.+
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 34444455555555555555555555544433 334445555555555555555544444443
No 352
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.80 E-value=84 Score=33.59 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHcc
Q 005161 297 SILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDS 341 (711)
Q Consensus 297 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (711)
-.+|-.+.++|.+++|.++..+....- ......+...+..+...
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~~-~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQF-QKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGGS--TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHhC
Confidence 355667778888888888774433222 12233455666666553
No 353
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.59 E-value=63 Score=32.00 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=70.7
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH-----------
Q 005161 513 IYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLD----------- 581 (711)
Q Consensus 513 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----------- 581 (711)
.+...|-|+.|..+-..-.-.+..-...-..+++.....++..-.+.+................+.+..
T Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (831)
T PRK15180 623 TLVNLGAWKDACTLAHMTLIRNSNITSLQSIMLRSIRHINNIPFLIDLIANVMSITLSFQNASMNKLFEKECRNVATRAL 702 (831)
T ss_pred hhhccchhhhhHHHHHHHHHhcCCchhHHHHHHHHHhhhcCchhHHHHHHHhHheeeeecchhHHHHHHHHHHHHHHHHH
Confidence 345567777776665543333322222333445555555554444443333222211111111111111
Q ss_pred HHH----hcCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhhcC----CHHHHHHHHHHHHHCCCCCC---hHhH
Q 005161 582 AYG----KEGQMENFKNVLRRMKETSCTFDHYT----YNIMIDIYGEQG----WINEVVGVLTELKECGLRPD---LCSY 646 (711)
Q Consensus 582 ~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~p~---~~~~ 646 (711)
-|. ..|+.++|..++-.+.. +.||..- |..++..+.... ..-...+.++-.++. +..| ....
T Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 779 (831)
T PRK15180 703 KYVRQKKTEGRLDEALSVLISLKR--IEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKL-LVFDSENAYAL 779 (831)
T ss_pred HHHHhhcccccHHHHHHHHHhhhc--cCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhh-eeeccchHHHH
Confidence 122 34788899888887765 6788652 334444332211 111111122222211 1111 1111
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHc
Q 005161 647 NTLIKAYGIAGMVEDAVGLVKEMREN 672 (711)
Q Consensus 647 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 672 (711)
....-......++..|+++++++.+-
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (831)
T PRK15180 780 KYAALNAMHLRDYTQALQYWQRLEKV 805 (831)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHhc
Confidence 11122233567888999999998874
No 354
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.57 E-value=44 Score=29.62 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=12.7
Q ss_pred HHccCCHHHHHHHHHHHH
Q 005161 60 YKKSWNVEEAEFAFNQMR 77 (711)
Q Consensus 60 ~~~~g~~~~A~~~~~~~~ 77 (711)
+...+++++|-++|.+.-
T Consensus 24 fgg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAA 41 (288)
T ss_pred cCCCcchHHHHHHHHHHH
Confidence 344568888888887654
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.56 E-value=6.9 Score=27.48 Aligned_cols=46 Identities=15% Similarity=0.103 Sum_probs=20.6
Q ss_pred ccCChHHHHHHHHHHHHcCCCC-C-cchHHHHHHHHHhcchHHHHHHH
Q 005161 655 IAGMVEDAVGLVKEMRENGIEP-D-KITYTNMITALQRNDKFLEAIKW 700 (711)
Q Consensus 655 ~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~~~~~~A~~~ 700 (711)
...+.++|+..++...+.-..| + ..++..++.+|...|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544422222 1 23444555555555555554443
No 356
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.34 E-value=38 Score=30.16 Aligned_cols=100 Identities=10% Similarity=-0.036 Sum_probs=69.8
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHc------CCCCCHhhH-----------HHHHHHHHccCCHHHHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLEC------DVQPNVATF-----------GMLMGLYKKSWNVEEAEFAFNQMR 77 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~ 77 (711)
+.++.-=-+.+.+.|++.+|...|++++.. .-+|...-| ....+++...|++-++++--..+.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 334444445677888888888887776542 113433333 233455566788888888888888
Q ss_pred HcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 78 KLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
...+.+..+|..-..+.+..-+.++|..-|..++..+
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888877754
No 357
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.28 E-value=25 Score=32.07 Aligned_cols=85 Identities=8% Similarity=0.069 Sum_probs=36.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh-----cc
Q 005161 443 IYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYG-----KA 517 (711)
Q Consensus 443 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~ 517 (711)
+++..+++.+++...-+.....-+..+.+...-|-.|.+.+++..+.++-...++..-.-+...|..+++.|. =.
T Consensus 92 ALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPL 171 (309)
T PF07163_consen 92 ALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPL 171 (309)
T ss_pred HHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhcc
Confidence 3344444444443333333322233334444444455555555555555555443211112222444443332 24
Q ss_pred CcHHHHHHHH
Q 005161 518 KLFKRVRKLF 527 (711)
Q Consensus 518 ~~~~~a~~~~ 527 (711)
|.+++|+++.
T Consensus 172 G~~~eAeelv 181 (309)
T PF07163_consen 172 GHFSEAEELV 181 (309)
T ss_pred ccHHHHHHHH
Confidence 5566665554
No 358
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=79.24 E-value=25 Score=26.55 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 65 NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVS 144 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 144 (711)
..++|..+.+++...+...+.+-..-+..+...|+|++|+.. ......||...|.++- -.+.|--+++..-+.+
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~----~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLL----PQCHCYPDLEPWAALC--AWKLGLASALESRLTR 94 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHH----HTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHh----cccCCCccHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 355555555555554443333333444455555555555111 1122334444443332 2244555555554444
Q ss_pred HHHc
Q 005161 145 MREA 148 (711)
Q Consensus 145 ~~~~ 148 (711)
+-..
T Consensus 95 la~~ 98 (116)
T PF09477_consen 95 LASS 98 (116)
T ss_dssp HCT-
T ss_pred HHhC
Confidence 4433
No 359
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.23 E-value=20 Score=32.59 Aligned_cols=86 Identities=15% Similarity=0.062 Sum_probs=50.8
Q ss_pred HHHHHccCCHHHHHHHHHHHH-HcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 005161 57 MGLYKKSWNVEEAEFAFNQMR-KLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQ---- 131 (711)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 131 (711)
|++++..+++.+++...-..- ....-+......-|-.|.+-+.+..+.++-...+...-..+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 566777777776665433221 111123456666677778888888877777776654322233345555555544
Q ss_pred -cCCHHHHHHHH
Q 005161 132 -QGKLEEAELVL 142 (711)
Q Consensus 132 -~~~~~~a~~~~ 142 (711)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 57777777766
No 360
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.17 E-value=24 Score=26.27 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=22.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005161 92 TIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 148 (711)
..+...|+|++|..+.+.. ..||...|.++-. .+.|-.+++..-+.++-..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3444455555555544433 2344444433322 2344444444444444443
No 361
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.13 E-value=49 Score=29.89 Aligned_cols=204 Identities=10% Similarity=0.089 Sum_probs=127.4
Q ss_pred CCCCcHHHHHHHHHH-HHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----C
Q 005161 358 DGKPNLHIMCTMIDT-YSVMGMFTEAEKLYLNLKSSGIRLD---LIAFTVVVRMYVKAGSLKDACAVLETMEKQK----D 429 (711)
Q Consensus 358 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~ 429 (711)
+..||+..=|..-.+ -.+...+++|+.-|+++.+...... ..+...++..+.+.+++++.+..++++..-- .
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345655543322211 1245589999999999988632222 3445567888999999999999998874321 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC----
Q 005161 430 IEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKS-----GITWNQELYDCVINCCARALPIDELSRVFDEMLQHGF---- 500 (711)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 500 (711)
..-+..+.+.++.....+.+.+...++++.-++. +-..--.+-..+...|...+++.....+++++...-.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1234556778887777777777777777654332 1111112335677778888889998889888875311
Q ss_pred Ccc-------HHHHHHHHHHHhccCcHHHHHHHHHHHHHcC--CCchhHHHHHHH----HHHhcCCHHHHHHHH
Q 005161 501 TPN-------IITLNVMLDIYGKAKLFKRVRKLFSMAKKLG--LVDVISYNTIIA----AYGQNKNLESMSSTV 561 (711)
Q Consensus 501 ~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~----~~~~~~~~~~a~~~~ 561 (711)
..| ...|..-++.|....+-.+...++++..... +|.+.....+-. ...+.|++++|..-|
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence 112 2345555677777888888888888665433 366655544322 245678888876533
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.55 E-value=4 Score=24.97 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=10.3
Q ss_pred HHHHhhccCChHHHHHHHHHHH
Q 005161 160 LMTGYGKVSNMEAAQRLFLSIK 181 (711)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~ 181 (711)
|..+|...|+.+.|+++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3444444444444444444444
No 363
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.82 E-value=51 Score=29.37 Aligned_cols=117 Identities=17% Similarity=0.091 Sum_probs=81.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHH
Q 005161 63 SWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLEN-WLVMLNAYSQQGKLEEAELV 141 (711)
Q Consensus 63 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~ 141 (711)
...++.|...+.+....+|....-|..-+..+.+..+++.+..-..+.++.. ||..- ...+...+.....+++|...
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~--~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--PNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--hHHHHHHHHHHHHHHhhccccHHHHH
Confidence 4467888888888888888877788888888999999998888877777743 55433 33445566677888888888
Q ss_pred HHHHHH----cCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 005161 142 LVSMRE----AGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIK 181 (711)
Q Consensus 142 ~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 181 (711)
+++... ..+.+.......|..+--+.=.+.+..++.++..
T Consensus 101 Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 101 LQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 887643 3445555666777666545555556666555443
No 364
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.23 E-value=4.2 Score=21.92 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=10.7
Q ss_pred HHHHHHHhccCChHHHHHHHHHHH
Q 005161 647 NTLIKAYGIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 647 ~~l~~~~~~~g~~~~A~~~~~~~~ 670 (711)
..+..++...|++++|...+++..
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444444444444444443
No 365
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.09 E-value=17 Score=36.73 Aligned_cols=132 Identities=17% Similarity=0.071 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 005161 171 EAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDM 250 (711)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (711)
+-+-.+|-.|.. ...|-....|...--+...|+...|...+.........-..+....+.....+.|-...|..++.+.
T Consensus 590 e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 334444444443 2224333444333333446777777777766654322222334555666666667666777777777
Q ss_pred HHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHH
Q 005161 251 LNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYV 304 (711)
Q Consensus 251 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (711)
+......+-++..+.+++....+.+.|++.|+++++.++. +..+-+.|...-+
T Consensus 669 l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 669 LAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 7666444466677777777788888888888888777666 6666666665554
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.08 E-value=11 Score=26.62 Aligned_cols=46 Identities=9% Similarity=-0.020 Sum_probs=29.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCch---hHHHHHHHHHHhcCCHHHHHHHH
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVCE---SAYSAMITIYTRLSLYEKAEEVI 107 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~ 107 (711)
...+-+.|+..|..+.+....+. .++..++.+|+..|++++++.+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777776655543 34555666777777777666543
No 367
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.04 E-value=4.4 Score=21.23 Aligned_cols=14 Identities=14% Similarity=-0.019 Sum_probs=5.3
Q ss_pred HHHHhcCCHHHHHH
Q 005161 92 TIYTRLSLYEKAEE 105 (711)
Q Consensus 92 ~~~~~~~~~~~a~~ 105 (711)
..+...|++++|..
T Consensus 9 ~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 9 RALLAQGDPDEAER 22 (26)
T ss_pred HHHHHcCCHHHHHH
Confidence 33333333333333
No 368
>PRK09687 putative lyase; Provisional
Probab=76.82 E-value=66 Score=30.14 Aligned_cols=221 Identities=13% Similarity=-0.002 Sum_probs=134.7
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCH----HHHHHHHHHHHHcCCCchhHHH
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNV----EEAEFAFNQMRKLGLVCESAYS 88 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~ 88 (711)
+|..+-...+.++...|. ..+......+.+ .+|.......+.++.+.|+. .++...+..+...++.+ .+..
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~-~VR~ 109 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSA-CVRA 109 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCH-HHHH
Confidence 455566667777777775 334444444444 34667777777888888863 46777777665545442 2333
Q ss_pred HHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005161 89 AMITIYTRLSL-----YEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTG 163 (711)
Q Consensus 89 ~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (711)
..+.++...+. ...+...+...... ++..+....+.++.+.++ +.+...+-.+.+. ++..+-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 33333333322 12344444443332 356677788888888876 5677777777763 455566666666
Q ss_pred hhccC-ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHH
Q 005161 164 YGKVS-NMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEG 242 (711)
Q Consensus 164 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (711)
+.+.+ +...+...+..+.. .++...-...+.++.+.|+. .|...+-...+.+ + .....+.++...|+. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 66653 24566666666665 46777778888889888884 5666666555543 2 234566777777775 5
Q ss_pred HHHHHHHHHHCCC
Q 005161 243 AVNTLDDMLNMGC 255 (711)
Q Consensus 243 a~~~~~~~~~~~~ 255 (711)
|...+..+.+..+
T Consensus 253 a~p~L~~l~~~~~ 265 (280)
T PRK09687 253 LLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHHHHhhCC
Confidence 6777776666443
No 369
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.67 E-value=88 Score=31.50 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=45.9
Q ss_pred cHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 327 EDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVR 406 (711)
Q Consensus 327 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 406 (711)
+.....+++..+..+....-...+..+|+.-| .+...+..++..|... ..+.-..+++.+.+..+. |...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 34445555555555555555666666655532 3444555555555555 334455555555554332 3333333333
Q ss_pred HHHHcCChHHHHHHHHHH
Q 005161 407 MYVKAGSLKDACAVLETM 424 (711)
Q Consensus 407 ~~~~~~~~~~A~~~~~~~ 424 (711)
.|-+ ++.+.+...|..+
T Consensus 141 ~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHH-hchhhHHHHHHHH
Confidence 3322 5555555555544
No 370
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.26 E-value=4.9 Score=24.60 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=12.6
Q ss_pred HHHHHhccCChHHHHHHHHHHH
Q 005161 649 LIKAYGIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 649 l~~~~~~~g~~~~A~~~~~~~~ 670 (711)
|..+|...|+.+.|.+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 4555556666666665555544
No 371
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.89 E-value=72 Score=30.14 Aligned_cols=150 Identities=12% Similarity=0.085 Sum_probs=70.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHh----ccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh----cC
Q 005161 481 RALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYG----KAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQ----NK 552 (711)
Q Consensus 481 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 552 (711)
..+++..+...+......+.. .....+...|. ...+..+|.+.+......+.+ .....+...|.. ..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~--~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA--EALFNLGLMYANGRGVPL 127 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH--HHHHhHHHHHhcCCCccc
Confidence 456677777777776654322 22223333332 234566677777755544332 233334444433 33
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----C---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----c
Q 005161 553 NLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKE----G---QMENFKNVLRRMKETSCTFDHYTYNIMIDIYGE----Q 621 (711)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 621 (711)
+..+|...++...+.|..+.......+...|..- + +...|...+.++-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 6666777777766666443212222233333321 0 1224555555555543 22223333333321 2
Q ss_pred CCHHHHHHHHHHHHHCC
Q 005161 622 GWINEVVGVLTELKECG 638 (711)
Q Consensus 622 g~~~~A~~~~~~~~~~~ 638 (711)
.+..+|...|++..+.|
T Consensus 205 ~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 205 RDLKKAFRWYKKAAEQG 221 (292)
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 25556666666655544
No 372
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=75.85 E-value=71 Score=29.99 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=10.6
Q ss_pred CcHHHHHHHHHHHHHcCC
Q 005161 518 KLFKRVRKLFSMAKKLGL 535 (711)
Q Consensus 518 ~~~~~a~~~~~~~~~~~~ 535 (711)
++.+....++..++..+.
T Consensus 36 ~~~~~~e~l~~~Ird~~M 53 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDM 53 (393)
T ss_pred cCHHHHHHHHHHHHhccc
Confidence 355555666666666654
No 373
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.72 E-value=29 Score=32.47 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=53.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCC-CCCC--hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHH
Q 005161 613 IMIDIYGEQGWINEVVGVLTELKECG-LRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK-ITYTNMITAL 688 (711)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~ 688 (711)
-=.+-|.+..++..|...|.+-++.. -.|| ...|+.-..+-...|++..|+.-....+. +.|+. ..|..=..|+
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhhHHH
Confidence 33455666666777777776665522 1233 44566656666666677767666666665 56654 4444555666
Q ss_pred HhcchHHHHHHHHHHH
Q 005161 689 QRNDKFLEAIKWSLWM 704 (711)
Q Consensus 689 ~~~~~~~~A~~~~~~m 704 (711)
....++.+|..|.++.
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 6666766666666554
No 374
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.17 E-value=1.2e+02 Score=32.39 Aligned_cols=99 Identities=10% Similarity=0.104 Sum_probs=45.7
Q ss_pred HcCCCHHHHHHHHHHHHHCCCC--ChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHH
Q 005161 235 AKYEDEEGAVNTLDDMLNMGCQ--HSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDA 312 (711)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 312 (711)
.+.+.+++|....+.....-+. ...+...++..+...|++++|-...-.+... +...|--.+..+...++....
T Consensus 367 l~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchh
Confidence 3344444444444333322221 2234444555555555555555555444433 445555555555555554333
Q ss_pred HHHHHhhhhcCCCccHhhHHHHHHHHHc
Q 005161 313 MKVLGDKRWKDTVFEDNLYHLLICSCKD 340 (711)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 340 (711)
..+ +.......++..|..++-.+..
T Consensus 443 a~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hcc---CCCCCcccCchHHHHHHHHHHH
Confidence 222 2333333445556666655544
No 375
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.60 E-value=66 Score=28.61 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=31.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCccHhhHH------HHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 005161 200 GRAGNYREAKWYYKELKHLGYKPNASNLY------TLINLHAKYEDEEGAVNTLDDMLNMGCQH 257 (711)
Q Consensus 200 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 257 (711)
...+++.+|.++|++.....+..+.--|. ...-++.-..|.-.+.+.+++..+..|.-
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 45677888888888877654433222111 11112222255556666667766666543
No 376
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.43 E-value=7.8 Score=20.74 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHhCc
Q 005161 680 TYTNMITALQRNDKFLEAIKWSLWMKQIGL 709 (711)
Q Consensus 680 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 709 (711)
.+..+..++...|++++|...++...+...
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 567788899999999999999998876543
No 377
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.93 E-value=26 Score=27.32 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 593 KNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
.+-++......+.|++......+.+|.+.+|+..|.++|+-++.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444455666666666666777777777777777666655
No 378
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.46 E-value=2.9 Score=38.83 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=62.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHH
Q 005161 585 KEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAV 663 (711)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 663 (711)
..|.++.|++.+...++.+ ++....|..-..++.+.++...|++-++..++ +.|| ..-|-.-..+-...|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHH
Confidence 4577888888888777653 45555666666777777888888888877776 4566 344555555566678888888
Q ss_pred HHHHHHHHcCCCCCc
Q 005161 664 GLVKEMRENGIEPDK 678 (711)
Q Consensus 664 ~~~~~~~~~~~~p~~ 678 (711)
..+....+.++.+..
T Consensus 203 ~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 203 HDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHhccccHHH
Confidence 888888775555543
No 379
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=72.00 E-value=1e+02 Score=30.09 Aligned_cols=66 Identities=8% Similarity=0.018 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 432 PDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITW---NQELYDCVINCCARALPIDELSRVFDEMLQ 497 (711)
Q Consensus 432 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 497 (711)
....+|..++..+.+.|.++.|...+..+...+... .+.+...-+...-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567777788888888888888888777654221 334444445556667777888887777765
No 380
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.92 E-value=17 Score=23.40 Aligned_cols=31 Identities=29% Similarity=0.219 Sum_probs=20.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCcch
Q 005161 648 TLIKAYGIAGMVEDAVGLVKEMRENGIEPDKIT 680 (711)
Q Consensus 648 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 680 (711)
.+.-++.+.|++++|.+..+.+.+ +.|+..-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHH
Confidence 455667777778888877777777 6776433
No 381
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=70.97 E-value=1.1e+02 Score=30.01 Aligned_cols=130 Identities=8% Similarity=0.035 Sum_probs=64.1
Q ss_pred HcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005161 78 KLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAY 157 (711)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 157 (711)
..+|...+++..+..++..+|+.+.|.+++++.+-.- ..++......+.....-..+ ++ .-....|...|
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~-----rL-~~~~~eNR~ff 103 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNC-----RL-DYRRPENRQFF 103 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCcc-----cc-CCccccchHHH
Confidence 4456666777777777778888777777777654310 00111111000000000000 00 00011233333
Q ss_pred HHH---HHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 005161 158 NTL---MTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWG-RAGNYREAKWYYKELKH 217 (711)
Q Consensus 158 ~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~ 217 (711)
.+| +..+.+.|-+..|.++.+-+...++.-|+..-..+|+.|+ +.++++--+++++....
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 333 3455666777777777777766555445555555555553 45666666666665443
No 382
>PRK11619 lytic murein transglycosylase; Provisional
Probab=70.27 E-value=1.6e+02 Score=31.68 Aligned_cols=208 Identities=6% Similarity=-0.054 Sum_probs=107.0
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHH
Q 005161 410 KAGSLKDACAVLETMEKQKDIEPDA--YLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDE 487 (711)
Q Consensus 410 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 487 (711)
...+.+.|...+..........+.. ..+..+.......+..+++...+....... .+......-+....+.++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 3456788888888875544443332 223334333333322556666666544332 244445555556668889988
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 005161 488 LSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESM-SSTVQEMQF 566 (711)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 566 (711)
+...+..|.... .-...-.--+..++...|+.++|...|+.+... . ..|..+...- .|..-.. ...... ..
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~--~--~fYG~LAa~~--Lg~~~~~~~~~~~~-~~ 402 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ--R--GFYPMVAAQR--LGEEYPLKIDKAPK-PD 402 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--C--CcHHHHHHHH--cCCCCCCCCCCCCc-hh
Confidence 888888875432 223333444566666789999999999887442 1 1222222211 1211000 000000 00
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 005161 567 DGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLT 632 (711)
Q Consensus 567 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 632 (711)
..+... .-..-+..+...|....|...+..+... .+......+...-...|..+.++....
T Consensus 403 ~~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 403 SALTQG--PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred hhhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 000000 0112234455678888888888777763 233444445555556677666665554
No 383
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.10 E-value=1.6e+02 Score=31.60 Aligned_cols=195 Identities=14% Similarity=0.081 Sum_probs=110.1
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCc---hhHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHH--
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMR-KLGLVC---ESAYSAMITIYT-RLSLYEKAEEVIRLIREDKVVPNLE-- 120 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~---~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-- 120 (711)
.+...|..||.. |++-++.+. ...+.+ ..++..++.+|. ...++++|+..+++.......++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 455566666543 444455555 333333 346667777776 6788999999999765433222222
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCH--HHHHHH-HHHhhccCChHHHHHHHHHHHhcC---CCCCh
Q 005161 121 ---NWLVMLNAYSQQGKLEEAELVLVSMREAGF--SPNI--VAYNTL-MTGYGKVSNMEAAQRLFLSIKDVG---LEPDE 189 (711)
Q Consensus 121 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 189 (711)
+-..++..+.+.+... |...+++.++.-- +-.. ..+.-+ +..+...+++..|.+.++.+.... ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2234566666666655 8888888776411 1111 222222 222223379999999998876532 23444
Q ss_pred hhHHHHHHHHH--hcCCHHHHHHHHHHHHhcCC---------CccHhhHHHHHHHH--HcCCCHHHHHHHHHHHHH
Q 005161 190 TTYRSMIEGWG--RAGNYREAKWYYKELKHLGY---------KPNASNLYTLINLH--AKYEDEEGAVNTLDDMLN 252 (711)
Q Consensus 190 ~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~ 252 (711)
..+..++.+.. +.+..+.+.+..+++..... .|-..+|..+++.+ ...|++..+...++++..
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444555444 34556777777777643321 23345566666643 466777777776666553
No 384
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.02 E-value=43 Score=24.99 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHH
Q 005161 100 YEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLS 179 (711)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 179 (711)
.++|..+-+.+...+-. ...+-..-+..+...|+|++|..+.+.. ..||...|..|... +.|--+.+...+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 35555555544433211 2222233345555666666666655544 24566666555442 45555555555555
Q ss_pred HHhcC
Q 005161 180 IKDVG 184 (711)
Q Consensus 180 ~~~~~ 184 (711)
+...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 55544
No 385
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.41 E-value=1.3e+02 Score=30.20 Aligned_cols=39 Identities=5% Similarity=0.126 Sum_probs=24.6
Q ss_pred cCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCH
Q 005161 341 SGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMF 379 (711)
Q Consensus 341 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 379 (711)
.+.++...+++..+...|.......++.-...|.+.|..
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 566777777777776666555555566666666666654
No 386
>PRK11619 lytic murein transglycosylase; Provisional
Probab=69.06 E-value=1.7e+02 Score=31.50 Aligned_cols=52 Identities=10% Similarity=-0.035 Sum_probs=22.4
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005161 372 TYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETM 424 (711)
Q Consensus 372 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 424 (711)
.....++++.+...+..|.... .-...-.-=+.+++...|+.++|...|+.+
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3335555555555555443321 111111222334444455555555555554
No 387
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.16 E-value=9.5 Score=25.59 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHH
Q 005161 624 INEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 624 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 670 (711)
++...++++.++.. .-|....-.++.+|...|++++|.++++++.
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444444431 2233333444566666666666666666554
No 388
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=67.94 E-value=76 Score=27.01 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCCchh--------HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 66 VEEAEFAFNQMRKLGLVCES--------AYSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 66 ~~~A~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
++.|+.+|+.+.+.-+.+.. .-...+..|.++|.+++|.+++++.-.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 44566666666554433210 112223445555555555555554443
No 389
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=66.74 E-value=1.8e+02 Score=30.88 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 85 SAYSAMITIYTRLSLYEKAEEVIRL 109 (711)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~~~~~ 109 (711)
.-|. .+..++-.|.++.|.+++..
T Consensus 150 ~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 150 DFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 3455 78888888999999998853
No 390
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=66.51 E-value=15 Score=33.95 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=32.6
Q ss_pred CCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHH
Q 005161 186 EPDETT-YRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYT 229 (711)
Q Consensus 186 ~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 229 (711)
.||..+ |+..|...++.|+.++|+.++++.++.|+.--..+|..
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 355555 46888888888899999999988888887655555543
No 391
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=66.38 E-value=1.5e+02 Score=29.94 Aligned_cols=162 Identities=10% Similarity=0.124 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 469 QELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAY 548 (711)
Q Consensus 469 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 548 (711)
.....+++..+..+..+.-+..+..+++..| .+...+..++++|... ..+.-..+++++.+....+...-..++..|
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3344444444444444444444444444432 2333444444444444 334444444544444444444444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhhcC
Q 005161 549 GQNKNLESMSSTVQEMQFDGFSVS-----LEAYNSMLDAYGKEGQMENFKNVLRRMKE-TSCTFDHYTYNIMIDIYGEQG 622 (711)
Q Consensus 549 ~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 622 (711)
-+ ++.+.+..+|.++...-++.. ...|..+... -..+.+....+...+.. .|...-...+.-+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 43 444444444444433311100 1122222211 02344444444444443 222233333444444555555
Q ss_pred CHHHHHHHHHHHHH
Q 005161 623 WINEVVGVLTELKE 636 (711)
Q Consensus 623 ~~~~A~~~~~~~~~ 636 (711)
++++|++++..+.+
T Consensus 220 N~~eai~Ilk~il~ 233 (711)
T COG1747 220 NWTEAIRILKHILE 233 (711)
T ss_pred CHHHHHHHHHHHhh
Confidence 56666666655544
No 392
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=66.00 E-value=19 Score=19.54 Aligned_cols=27 Identities=7% Similarity=0.006 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHH
Q 005161 65 NVEEAEFAFNQMRKLGLVCESAYSAMI 91 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~~~~~~~~l~ 91 (711)
+.+.|..+|+++....+.....|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555444444444443
No 393
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.61 E-value=7.8 Score=36.19 Aligned_cols=116 Identities=14% Similarity=0.051 Sum_probs=75.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELV 141 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 141 (711)
..|.++.|++.|-...+.+|.....|..-.+++.+.+++..|+.=+......+.. +...|-.--.+-...|++++|...
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHH
Confidence 5678888888888888888877777777778888888888888888777665433 222232222233345888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHH
Q 005161 142 LVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSI 180 (711)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 180 (711)
+....+.++.+....+. =...-..+..++-...+++.
T Consensus 205 l~~a~kld~dE~~~a~l--KeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 205 LALACKLDYDEANSATL--KEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHhccccHHHHHHH--HHhccchhhhhhchhHHHHH
Confidence 88888887665554443 23333344444444444443
No 394
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.36 E-value=47 Score=26.02 Aligned_cols=44 Identities=7% Similarity=0.221 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 005161 453 LSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEML 496 (711)
Q Consensus 453 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 496 (711)
..+.++.+....+.|++.+....+++|.+.+++..|.++|+-+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555554
No 395
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=65.30 E-value=53 Score=24.21 Aligned_cols=64 Identities=13% Similarity=0.071 Sum_probs=43.4
Q ss_pred HHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHhcCCHH
Q 005161 37 WFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC--ESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 101 (711)
-++..++.+ +.|......+...+...|++++|++.+-.+.+.++.. ..+-..|+.++...|.-+
T Consensus 10 al~~~~a~~-P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 10 ALEAALAAN-PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 344455554 5677788888899999999999999999999887654 456666776666555543
No 396
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.75 E-value=40 Score=25.05 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 87 YSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
...+...+...|++++|...+++.++
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455556666666666666665543
No 397
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.27 E-value=1.6e+02 Score=29.56 Aligned_cols=9 Identities=11% Similarity=0.124 Sum_probs=3.7
Q ss_pred HHHHcCCCC
Q 005161 668 EMRENGIEP 676 (711)
Q Consensus 668 ~~~~~~~~p 676 (711)
-+.+.|..|
T Consensus 220 ~Ll~~gad~ 228 (413)
T PHA02875 220 LFIKRGADC 228 (413)
T ss_pred HHHHCCcCc
Confidence 333444444
No 398
>PRK10941 hypothetical protein; Provisional
Probab=63.34 E-value=1.1e+02 Score=28.40 Aligned_cols=62 Identities=11% Similarity=-0.146 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 148 (711)
..+.+-.+|.+.++++.|+.+.+.++...+. ++.-+.-..-.|.+.|.+..|..=++..++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3445556666777777777777766665433 3444445555566667777776666666554
No 399
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=63.32 E-value=1.3e+02 Score=27.86 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=10.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 575 AYNSMLDAYGKEGQMENFKNVLRR 598 (711)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~ 598 (711)
.+..+...|++.++.+.+.+...+
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHH
Confidence 333444444444444444444433
No 400
>PRK10941 hypothetical protein; Provisional
Probab=63.31 E-value=93 Score=28.88 Aligned_cols=77 Identities=14% Similarity=-0.017 Sum_probs=60.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 005161 54 GMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK-VVPNLENWLVMLNAYS 130 (711)
Q Consensus 54 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 130 (711)
+.+-.+|.+.++++.|+...+.+....|.+..-+.--+-+|.+.|.+..|..=++..++.- -.|+.......+..+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 4456678899999999999999999999887778778888999999999999888887654 3344555555555443
No 401
>PRK12798 chemotaxis protein; Reviewed
Probab=62.73 E-value=1.6e+02 Score=29.00 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=21.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-hccCChHHHHHHHHHH
Q 005161 132 QGKLEEAELVLVSMREAGFSPNIVAYNTLMTGY-GKVSNMEAAQRLFLSI 180 (711)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~ 180 (711)
.|+-+++.+.+..+.....++....|-.|+.+- ....+...|+++|+..
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~a 174 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQA 174 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 344455555554444444444444444444322 2233444455554443
No 402
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.02 E-value=59 Score=23.63 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=6.2
Q ss_pred CCHHHHHHHHHHHH
Q 005161 98 SLYEKAEEVIRLIR 111 (711)
Q Consensus 98 ~~~~~a~~~~~~~~ 111 (711)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 403
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.87 E-value=2e+02 Score=29.01 Aligned_cols=37 Identities=8% Similarity=-0.110 Sum_probs=23.4
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 513 IYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYG 549 (711)
Q Consensus 513 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 549 (711)
.|...|++-.|.+-|.........++..|-.+..+|.
T Consensus 344 ~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3455666666666666666665566666666666654
No 404
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=59.26 E-value=1.8e+02 Score=28.33 Aligned_cols=96 Identities=19% Similarity=0.171 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--C-CCCC--HHHHHHHHHHhhccCChHHHHHHHHHHHhcCC-CCCh-----hhH
Q 005161 124 VMLNAYSQQGKLEEAELVLVSMREA--G-FSPN--IVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGL-EPDE-----TTY 192 (711)
Q Consensus 124 ~l~~~~~~~~~~~~a~~~~~~~~~~--~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-----~~~ 192 (711)
.+...+-..|+.++|..++.++.-. | +... +..--.-++.|.-.+++-.|.-+-.++...-+ .||. .-|
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY 215 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYY 215 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHH
Confidence 3444555567777766666655421 0 0001 11112224556666777777666555543222 2332 236
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005161 193 RSMIEGWGRAGNYREAKWYYKELKHLG 219 (711)
Q Consensus 193 ~~li~~~~~~g~~~~A~~~~~~~~~~~ 219 (711)
+.+++.....+.|=.+-+.|+..-..|
T Consensus 216 ~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 216 ELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHhcccccchhhHHHHHHHHhccc
Confidence 777777777777777777777766543
No 405
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=58.65 E-value=29 Score=34.38 Aligned_cols=104 Identities=13% Similarity=0.042 Sum_probs=69.8
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005161 58 GLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEE 137 (711)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 137 (711)
.-.....+++.|..++.++.+.++.+..-|..-..++.+.+++..|+.=+....+.++. ....|..-..++.+.+.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHHH
Confidence 33445678888888888888888876555555557788888888888777777766533 33445555566666777778
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 005161 138 AELVLVSMREAGFSPNIVAYNTLMTGY 164 (711)
Q Consensus 138 a~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (711)
|+..|+..... .|+..-....+.-|
T Consensus 91 A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 88777777764 45555555555443
No 406
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.32 E-value=54 Score=28.59 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=26.3
Q ss_pred CCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 005161 639 LRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEP 676 (711)
Q Consensus 639 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 676 (711)
..|++.+|..++.++...|+.++|....+++.. +-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 467777777777777777777777777777766 555
No 407
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.89 E-value=3e+02 Score=30.21 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 89 AMITIYTRLSLYEKAEEVIRLIREDKVVPNL--ENWLVMLNAYSQQGKLEEAELVLVSMRE 147 (711)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 147 (711)
.+=+.|...|+|+.|++....- |+. .++..-+..|.+.+++..|.+++.++.+
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 3446788889999998876532 222 3455556778888999999999988844
No 408
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.10 E-value=67 Score=26.37 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005161 85 SAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLEN 121 (711)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (711)
.-...++..+...+..-.|.++++.+.+.++..+..|
T Consensus 21 ~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 21 PQRLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 3344444444444444444455554444444433333
No 409
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=56.05 E-value=2.8e+02 Score=29.52 Aligned_cols=61 Identities=10% Similarity=0.135 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 005161 573 LEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELK 635 (711)
Q Consensus 573 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (711)
......++..|.+.|-.+.|.++.+.+-..- -...-|...+..+.++||......+.+.+.
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555666666666666666666554321 112234445555556666555554444444
No 410
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.00 E-value=27 Score=23.42 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=11.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHH
Q 005161 613 IMIDIYGEQGWINEVVGVLTELK 635 (711)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~ 635 (711)
.++.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44455555555555555555544
No 411
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=55.60 E-value=15 Score=29.00 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=18.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 005161 621 QGWINEVVGVLTELKECGLRPDLCSYNTLIKA 652 (711)
Q Consensus 621 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 652 (711)
.|.-.+|.++|++|++.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 45556677777777777666653 5555543
No 412
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.38 E-value=93 Score=26.53 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=25.1
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccC
Q 005161 614 MIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAG 657 (711)
Q Consensus 614 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 657 (711)
.+-.|.+.|.+++|.+++++..+ .|+......-+....+..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcc
Confidence 44567888888888888888776 344444444444444443
No 413
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.07 E-value=63 Score=30.45 Aligned_cols=48 Identities=17% Similarity=-0.044 Sum_probs=22.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRL 109 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 109 (711)
..|++..|+.=-..++..+|....+|..=..++....++.+|....+.
T Consensus 131 ~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 131 YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444444444444444444444444443
No 414
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.99 E-value=1.8e+02 Score=26.92 Aligned_cols=162 Identities=12% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH-------HHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHH
Q 005161 544 IIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNS-------MLDAYGKEGQMENFKNVLRRMKE----TSCTFDHYTYN 612 (711)
Q Consensus 544 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~ 612 (711)
+.+-..+.+++++|+..+.++...|+..+..+.+- +...|...|++..-.+......+ ..-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHhhcCC-HHHHHHHHHHHHHCCCCCChHhH-----HHHHHHHhccCChHHHHHHHHHHH----HcCCCCCc-chH
Q 005161 613 IMIDIYGEQGW-INEVVGVLTELKECGLRPDLCSY-----NTLIKAYGIAGMVEDAVGLVKEMR----ENGIEPDK-ITY 681 (711)
Q Consensus 613 ~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~~-~~~ 681 (711)
.++..+-...+ ++.-+.+....++-..+...... .-++..+.+.|.+.+|+.....+. +..-+|+. ..+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHH
Q 005161 682 TNMITALQRNDKFLEAIKWSLWMK 705 (711)
Q Consensus 682 ~~l~~~~~~~~~~~~A~~~~~~m~ 705 (711)
..=-++|.+-.+...+..-+-..+
T Consensus 169 llESKvyh~irnv~KskaSLTaAr 192 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAAR 192 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHH
No 415
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.83 E-value=59 Score=28.35 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=12.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005161 431 EPDAYLYCDMLRIYQQCGMLDKLSYLYYKI 460 (711)
Q Consensus 431 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 460 (711)
.|+...|..++.++...|+.++|.+...++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 416
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=54.79 E-value=1.1e+02 Score=25.13 Aligned_cols=58 Identities=7% Similarity=-0.040 Sum_probs=28.3
Q ss_pred HHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhc
Q 005161 249 DMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKH 306 (711)
Q Consensus 249 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (711)
.+.+.|...+.-...++..+...++.-.|..+++.+...++..+..+....+..+...
T Consensus 11 ~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 11 RLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 3344444444445555555555555555566665555554444433333333333333
No 417
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.58 E-value=2.3e+02 Score=28.16 Aligned_cols=55 Identities=4% Similarity=-0.035 Sum_probs=35.8
Q ss_pred HHhccCcHHHHHHHHHHHHHcCCCch--hHHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 005161 513 IYGKAKLFKRVRKLFSMAKKLGLVDV--ISYNTIIAAYG--QNKNLESMSSTVQEMQFD 567 (711)
Q Consensus 513 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 567 (711)
.+.+.+++..|.++++.+...-+++. ..+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34578888899988888887622222 24445555554 356777888888876654
No 418
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=53.47 E-value=3.6e+02 Score=30.01 Aligned_cols=49 Identities=16% Similarity=0.090 Sum_probs=23.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCccHhhHHHHHHHHHc
Q 005161 188 DETTYRSMIEGWGRAGNYREAKWYYKELKH-LGYKPNASNLYTLINLHAK 236 (711)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 236 (711)
|..++..-...+...|++..+++++.++.+ .+-+++...+..++..+..
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~ 1279 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLEN 1279 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 444444444444455566666666555544 2334444444444443333
No 419
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=52.84 E-value=2e+02 Score=26.92 Aligned_cols=261 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC-ChHH
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVS-NMEA 172 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 172 (711)
|...+--++..+++.-+.. ..++...-.+++.++.-.+ |..|....-..+=..+.+.| -..=
T Consensus 123 yLeK~fE~e~~k~Llflk~--F~e~Er~KLA~~Tal~l~n---------------Gt~~~tvl~~L~~d~LVkeGi~l~F 185 (412)
T KOG2297|consen 123 YLEKNFENEMRKFLLFLKL--FEENERKKLAMLTALLLSN---------------GTLPATVLQSLLNDNLVKEGIALSF 185 (412)
T ss_pred HHHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHHhC---------------CCCCHHHHHHHHHhhHHHHhHHHHH
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005161 173 AQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLN 252 (711)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (711)
|.++|+.... ....+.++..+.+.+.-++-.++| +|+..+-......+...|--+-..-.-.++..
T Consensus 186 ~~~lFk~~~~------Ek~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~ 251 (412)
T KOG2297|consen 186 AVKLFKEWLV------EKDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSE 251 (412)
T ss_pred HHHHHHHHHh------hccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHH
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHH
Q 005161 253 MGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYH 332 (711)
Q Consensus 253 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 332 (711)
.........+..-..+...+++.....++-..++..|+......+-........|.+-.++..+..-+.++ +|.
T Consensus 252 --~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK----~ya 325 (412)
T KOG2297|consen 252 --GARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLK----QYA 325 (412)
T ss_pred --HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHH----hhh
Q ss_pred HHHHHHHccCChhhHH---------------HHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 333 LLICSCKDSGHLANAV---------------KIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKS 391 (711)
Q Consensus 333 ~l~~~~~~~~~~~~a~---------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 391 (711)
.|+.+++..|+.+..+ ..|.+....-.+.+.-+=..++..|........-...++.|..
T Consensus 326 PLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~Fleqmkk 399 (412)
T KOG2297|consen 326 PLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQMKK 399 (412)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHH
No 420
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.72 E-value=82 Score=23.39 Aligned_cols=53 Identities=15% Similarity=0.089 Sum_probs=29.2
Q ss_pred hhcCCHHHHHHHHHHHHH----CCCCCC----hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 619 GEQGWINEVVGVLTELKE----CGLRPD----LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~----~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
.+.||+..|.+.+.+..+ .+..+. ....-.+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345666666555444443 211110 12223345556677888888888888764
No 421
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.48 E-value=2.5e+02 Score=27.89 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=34.3
Q ss_pred HHHHhcCChHHHHHHHHHHhHcCCCCCHh--hHHHHHHHHH--ccCCHHHHHHHHHHHHHc
Q 005161 23 YACNKRGCVELGAKWFHMMLECDVQPNVA--TFGMLMGLYK--KSWNVEEAEFAFNQMRKL 79 (711)
Q Consensus 23 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 79 (711)
..+.+.+++..|.++|+.+.+. ++++.. .+..+..+|. ..-++.+|.+.|+.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455777888888888887776 444443 3334444443 244667777777766654
No 422
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.46 E-value=1.8e+02 Score=26.27 Aligned_cols=60 Identities=13% Similarity=0.021 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 005161 122 WLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKD 182 (711)
Q Consensus 122 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (711)
+...-.++...|++-++++--.++++.. +.++..|..-..+.+..-+.++|.+-|..+.+
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3344455555666666666666666653 44666666666666666666667666666665
No 423
>PHA02875 ankyrin repeat protein; Provisional
Probab=52.44 E-value=2.6e+02 Score=28.13 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=6.5
Q ss_pred HHhcCCHHHHHHHH
Q 005161 94 YTRLSLYEKAEEVI 107 (711)
Q Consensus 94 ~~~~~~~~~a~~~~ 107 (711)
.+..|+.+.+..++
T Consensus 75 A~~~g~~~~v~~Ll 88 (413)
T PHA02875 75 AVEEGDVKAVEELL 88 (413)
T ss_pred HHHCCCHHHHHHHH
Confidence 34455555444433
No 424
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=52.38 E-value=80 Score=25.07 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCCCCc-chHHHHHHHHHhcchHHHHHHHHH
Q 005161 662 AVGLVKEMRENGIEPDK-ITYTNMITALQRNDKFLEAIKWSL 702 (711)
Q Consensus 662 A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~ 702 (711)
..++|+.|..+|+--.. .-|......+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555555444432 334444444555555555555543
No 425
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=52.32 E-value=39 Score=19.01 Aligned_cols=23 Identities=9% Similarity=0.265 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHcCCCCCcchHHH
Q 005161 659 VEDAVGLVKEMRENGIEPDKITYTN 683 (711)
Q Consensus 659 ~~~A~~~~~~~~~~~~~p~~~~~~~ 683 (711)
++.|..+|++... +.|+..+|..
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wik 25 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWIK 25 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHH
Confidence 4566666666665 4566655544
No 426
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=52.31 E-value=73 Score=28.23 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=48.6
Q ss_pred HHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 005161 24 ACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC 83 (711)
Q Consensus 24 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 83 (711)
...+.++.+.|.+++.+.++.- +.....|-.+...--+.|+++.|.+.+.++.+.+|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3456788889999999988763 5677788888888888999999999999999988875
No 427
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.05 E-value=97 Score=23.08 Aligned_cols=52 Identities=15% Similarity=0.048 Sum_probs=24.4
Q ss_pred HHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchH
Q 005161 628 VGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITY 681 (711)
Q Consensus 628 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 681 (711)
.+.++++...+....+-....|.-.|.+.|+.+.|.+-|+.=.. +-|.+.+|
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~f 108 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVF 108 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhH
Confidence 33444444433222233334455555566666666555554333 45554443
No 428
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=52.04 E-value=1e+02 Score=23.45 Aligned_cols=79 Identities=13% Similarity=0.168 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
-..++|..+.+.+...+.. ...+....+..+.++|+|++|. ..-. ....||...|..|.. .+.|--+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~AL---l~~~-~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEAL---LLPQ-CHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHH---HHHT-TS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHH---Hhcc-cCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 3456666666665554432 2223333444555666666661 1111 122455555554443 2455555666666
Q ss_pred HHHHhc
Q 005161 178 LSIKDV 183 (711)
Q Consensus 178 ~~~~~~ 183 (711)
.++...
T Consensus 93 ~rla~~ 98 (116)
T PF09477_consen 93 TRLASS 98 (116)
T ss_dssp HHHCT-
T ss_pred HHHHhC
Confidence 555543
No 429
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.57 E-value=1.3e+02 Score=24.27 Aligned_cols=71 Identities=13% Similarity=0.054 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 605 TFDHYTYNIMIDIYGEQGW---INEVVGVLTELKECGLRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
.++..+-..+..++.+..+ ..+.+.+++.+.+. -.|+ ......|.-++.+.++++++.++++.+.+ ..||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCc
Confidence 4555555666666666554 55677788887762 2343 33445567788888888888888888887 66664
No 430
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=51.52 E-value=2.2e+02 Score=26.93 Aligned_cols=59 Identities=7% Similarity=-0.062 Sum_probs=33.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005161 510 MLDIYGKAKLFKRVRKLFSMAKKLGLV--DVISYNTIIAAYGQNKNLESMSSTVQEMQFDG 568 (711)
Q Consensus 510 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 568 (711)
+.-+-.+.|+..+|.+.+..+.+..+. -......++.++....-+..+..++.+..+..
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 333344567777777777766655441 22344556666666655555555555554443
No 431
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.38 E-value=6e+02 Score=31.98 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005161 363 LHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETME 425 (711)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 425 (711)
..+|....+...+.|+++.|...+-...+.+ -+..+.-....+...|+...|+.+++...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3466667777777788887777666666553 23344555666777788888888777664
No 432
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=51.22 E-value=1.4e+02 Score=24.53 Aligned_cols=44 Identities=7% Similarity=0.154 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 005161 121 NWLVMLNAYSQQGK-LEEAELVLVSMREAGFSPNIVAYNTLMTGY 164 (711)
Q Consensus 121 ~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (711)
.|..++.+..+... --.+..+|..+.+.+.+.++.-|..++.++
T Consensus 81 sf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~ 125 (145)
T PF13762_consen 81 SFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAA 125 (145)
T ss_pred hHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444433333 222344444444444445555555555443
No 433
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=50.58 E-value=2.2e+02 Score=26.81 Aligned_cols=150 Identities=13% Similarity=0.043 Sum_probs=91.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhc----c
Q 005161 446 QCGMLDKLSYLYYKILKSGITWNQELYDCVINCCAR----ALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGK----A 517 (711)
Q Consensus 446 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 517 (711)
..+++..+...+......+.. .....+...|.. ..+...|..+|....+.|.++-. ..|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~---~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEAL---FNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHH---HhHHHHHhcCCCcc
Confidence 456778888888777764422 333333333332 24678888888877777643332 334444443 4
Q ss_pred CcHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----
Q 005161 518 KLFKRVRKLFSMAKKLGLVD-VISYNTIIAAYGQNK-------NLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGK---- 585 (711)
Q Consensus 518 ~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 585 (711)
.+..+|...+..+-+.+.++ ..+...+...|..-. +...|...+.+....+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 47888999999888887765 344555555554431 2336888888887776 33344444444433
Q ss_pred cCCHHHHHHHHHHHHHcCC
Q 005161 586 EGQMENFKNVLRRMKETSC 604 (711)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~ 604 (711)
..+.++|...|...-+.|.
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC
Confidence 2367888888888887653
No 434
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.24 E-value=2.6e+02 Score=27.49 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=66.1
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH---------c-----CCC------------chh---HHHHHHHHHHhc
Q 005161 47 QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRK---------L-----GLV------------CES---AYSAMITIYTRL 97 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~-----~~~------------~~~---~~~~l~~~~~~~ 97 (711)
+=...++..+..++..+|+...|.++.+++.- - ++. +.. +....+..+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 55677888888999999999998888877631 1 110 111 233445667777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYS-QQGKLEEAELVLVSMRE 147 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 147 (711)
|.+..|+++..-+...++.-|+......|+.|+ +.++++-..++.+....
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 777777777777777665545555556666555 55677767776666544
No 435
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.12 E-value=69 Score=29.36 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=26.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHH----cCCC-CCcchHHHHHHHHHhcchHHHHHHHHHHH
Q 005161 648 TLIKAYGIAGMVEDAVGLVKEMRE----NGIE-PDKITYTNMITALQRNDKFLEAIKWSLWM 704 (711)
Q Consensus 648 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~m 704 (711)
.++.-|.+.|++++|.++++.+.. .|.. +...+...+..|+.+.|+.++.+.+.-+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344455555555555555555431 1211 12234444555555555555555444333
No 436
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=49.86 E-value=2.8e+02 Score=27.81 Aligned_cols=129 Identities=9% Similarity=0.039 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECD-VQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR 96 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (711)
...-|..-...|+...|-+-....++.. -.|+.... ...+....|+++.+.+.+..+...-...+.+...+++...+
T Consensus 292 ~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 292 ITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhc
Confidence 3333444556677777765554444432 12333332 33345677888888888877765544456677788888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005161 97 LSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 149 (711)
.|++++|..+.+-|+...+. ++..........-..|-++++.-.|+++...+
T Consensus 370 l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 370 LARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88888888888888776655 44444444444445677888888888887765
No 437
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=49.60 E-value=78 Score=21.28 Aligned_cols=50 Identities=12% Similarity=-0.001 Sum_probs=29.2
Q ss_pred HHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHH-----ccCCHHHHHHHH
Q 005161 24 ACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYK-----KSWNVEEAEFAF 73 (711)
Q Consensus 24 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~ 73 (711)
.+...|++-+|-++++.+-.....+....+..+|.+.. +.|+...|..++
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 34567778888888877776443445555555554432 456666666543
No 438
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=48.93 E-value=2.1e+02 Score=26.02 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 005161 88 SAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQ-QGKLEEAELVLVSMR 146 (711)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 146 (711)
..+++..-+.|+++++.+.+.++...++..+..-.+.+..+|-. .|....+.+++..+.
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 34555666666666666666666666555555555555444432 233344444444443
No 439
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=48.80 E-value=2.9e+02 Score=27.55 Aligned_cols=61 Identities=7% Similarity=0.050 Sum_probs=37.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005161 508 NVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDG 568 (711)
Q Consensus 508 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 568 (711)
..|+.-|...|+..+|...++.+.-........+.+++.+.-+.|+-...+.+++.....|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4456666667777777666654433223455566667777777776666666666665544
No 440
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.55 E-value=82 Score=24.24 Aligned_cols=26 Identities=8% Similarity=0.163 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 541 YNTIIAAYGQNKNLESMSSTVQEMQF 566 (711)
Q Consensus 541 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 566 (711)
|..++..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55566666666666666666666555
No 441
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=48.26 E-value=1.9e+02 Score=25.30 Aligned_cols=61 Identities=11% Similarity=0.279 Sum_probs=42.1
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVA-TFGMLMGLYKKSWNVEEAEFAFNQM 76 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 76 (711)
....+.+++.|..+|+++.|-++|..+++.. +.|.. .|..=+.++.+.+.-....+.++++
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 5677889999999999999999999999864 33332 4555566666666544444444444
No 442
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.78 E-value=1.4e+02 Score=23.75 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHH
Q 005161 626 EVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKE 668 (711)
Q Consensus 626 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 668 (711)
++.++|+.|.++|+--. +..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666555444 45566666666666666666666654
No 443
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.70 E-value=3.1e+02 Score=27.65 Aligned_cols=55 Identities=9% Similarity=-0.017 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCC
Q 005161 551 NKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQ-----MENFKNVLRRMKETSCT 605 (711)
Q Consensus 551 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~ 605 (711)
..+++.|+..+..|.+.|..|....-..+..++...|. ..-|...++.....|.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 46777888888888887766665554444545444442 22334444444445543
No 444
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.38 E-value=2.2e+02 Score=25.86 Aligned_cols=55 Identities=7% Similarity=0.092 Sum_probs=25.8
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHh-cCCHHHHHHHHHHH
Q 005161 510 MLDIYGKAKLFKRVRKLFSMAKKLGL-VDVISYNTIIAAYGQ-NKNLESMSSTVQEM 564 (711)
Q Consensus 510 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~ 564 (711)
++....+.|+++++...++.+...++ .+..-.+.+..+|-. .|....++.++...
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 34445556666666666666655544 344444444444422 23333344444433
No 445
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.75 E-value=4.6e+02 Score=29.34 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc---HhhHHHHHHHHHcCCCH--HHHHHHHHHHHHCCCCCh-hHH----
Q 005161 192 YRSMIEGWGRAGNYREAKWYYKELKHLGYKPN---ASNLYTLINLHAKYEDE--EGAVNTLDDMLNMGCQHS-SIL---- 261 (711)
Q Consensus 192 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~-~~~---- 261 (711)
|..|+..|...|+.++|++++.+..+..-.-| ..-+..++......+.. +-+.+.-....+..+... .++
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 77888888888888888888888776321001 11222244444444433 444444444444433221 111
Q ss_pred --------HHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHh
Q 005161 262 --------GTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVK 305 (711)
Q Consensus 262 --------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (711)
...+-.++.....+-+...++.++...-..+....+.++..|+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 12333455666677777777777766666666677777777764
No 446
>PRK12798 chemotaxis protein; Reviewed
Probab=46.74 E-value=3e+02 Score=27.27 Aligned_cols=155 Identities=11% Similarity=-0.062 Sum_probs=81.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HccCCHHHHHHHHHHHHhC--CCCccHHHHHHHHHHHhccCcHHH
Q 005161 446 QCGMLDKLSYLYYKILKSGITWNQELYDCVINCC-ARALPIDELSRVFDEMLQH--GFTPNIITLNVMLDIYGKAKLFKR 522 (711)
Q Consensus 446 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 522 (711)
-.|+..++.+.+..+.....++...-+-.|+.+- ....+...|+.+|+...-. |.-.....+..-+....+.|+.++
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~r 203 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADK 203 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHH
Confidence 4677788888777776666666666666666543 3445777888888776532 211122233333445567777777
Q ss_pred HHHHHHHHHHcCCCchhH---HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 523 VRKLFSMAKKLGLVDVIS---YNTIIAAYGQNKNLESMSSTVQEMQFD-GFSVSLEAYNSMLDAYGKEGQMENFKNVLRR 598 (711)
Q Consensus 523 a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (711)
+..+-..-......++.. +..+.....+..+-..-.. +..+... .-..-...|..+...-.-.|+.+-|.-.-++
T Consensus 204 f~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 204 FEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 766665555544433222 2223333333332221111 2222222 1112234566666666666777777666666
Q ss_pred HHH
Q 005161 599 MKE 601 (711)
Q Consensus 599 ~~~ 601 (711)
...
T Consensus 283 A~~ 285 (421)
T PRK12798 283 ALK 285 (421)
T ss_pred HHH
Confidence 655
No 447
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=46.50 E-value=1.6e+02 Score=23.82 Aligned_cols=67 Identities=9% Similarity=-0.007 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005161 536 VDVISYNTIIAAYGQNKN---LESMSSTVQEMQFDGFSV-SLEAYNSMLDAYGKEGQMENFKNVLRRMKET 602 (711)
Q Consensus 536 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (711)
++..+...+.+++.+..+ ..+.+.+++++.+...+. .......|.-++.+.++++.++++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344444455555555443 334455666655422111 2223333445566667777777776666653
No 448
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.32 E-value=5.1e+02 Score=29.74 Aligned_cols=82 Identities=10% Similarity=0.017 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh----hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHH
Q 005161 227 LYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS----SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMA 302 (711)
Q Consensus 227 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 302 (711)
|..+++.+...+-.+.+.++...+++.-+... .+++.+...+...|.+-+|...+-.-.+. .....+...++-.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHH
Confidence 45566666666777777776666665543322 33455555555666665555444321110 0112233445555
Q ss_pred HHhcCCHH
Q 005161 303 YVKHGLID 310 (711)
Q Consensus 303 ~~~~g~~~ 310 (711)
+..+|.++
T Consensus 1064 Lfecg~l~ 1071 (1480)
T KOG4521|consen 1064 LFECGELE 1071 (1480)
T ss_pred HHhccchH
Confidence 55555543
No 449
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.28 E-value=73 Score=19.98 Aligned_cols=37 Identities=5% Similarity=0.131 Sum_probs=24.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMG 58 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 58 (711)
+...-+.|-..++..+++.|.+.|+.-+...+..+++
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3344566777777777777777777777666666554
No 450
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.67 E-value=1.2e+02 Score=22.18 Aligned_cols=68 Identities=12% Similarity=-0.038 Sum_probs=46.3
Q ss_pred HHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 005161 33 LGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEE 105 (711)
Q Consensus 33 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 105 (711)
.+.+++..+++.|+- +......+..+--..|+.+.|.+++..+. ++|. .+..++.++...|+-.-|.+
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~---aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEG---WFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc---HHHHHHHHHHHcCchhhhhc
Confidence 455678888887743 22333333322226689999999999999 7764 78888888888887665543
No 451
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.56 E-value=2.6e+02 Score=25.89 Aligned_cols=190 Identities=11% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH----hCCCCccHHHHHHHHHHHhccCcH
Q 005161 445 QQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEML----QHGFTPNIITLNVMLDIYGKAKLF 520 (711)
Q Consensus 445 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~ 520 (711)
.+.+++++|.+++..-... +.+.++...|.++-..++ +.+.+.+......++..+...+.-
T Consensus 1 v~~kky~eAidLL~~Ga~~---------------ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALI---------------LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHH---------------HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred CccccHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Q ss_pred H-HHHHHHHHHHHcC----CC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 005161 521 K-RVRKLFSMAKKLG----LV--DVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFK 593 (711)
Q Consensus 521 ~-~a~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (711)
+ +-.++.+.+.+.. .+ ++.....+...|.+.|++.+|...| -.|-.++...+..++..+...|...++
T Consensus 66 ~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf----l~~~~~~~~~~~~ll~~~~~~~~~~e~- 140 (260)
T PF04190_consen 66 EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF----LLGTDPSAFAYVMLLEEWSTKGYPSEA- 140 (260)
T ss_dssp -TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH----HTS-HHHHHHHHHHHHHHHHHTSS--H-
T ss_pred cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH----HhcCChhHHHHHHHHHHHHHhcCCcch-
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-------------CCCCChHhHHHH--HHHHhccCC
Q 005161 594 NVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKEC-------------GLRPDLCSYNTL--IKAYGIAGM 658 (711)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------~~~p~~~~~~~l--~~~~~~~g~ 658 (711)
.......+--|...++...|...++...+. +..++....|.+ +-..+..++
T Consensus 141 --------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~ 206 (260)
T PF04190_consen 141 --------------DLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDN 206 (260)
T ss_dssp --------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-
T ss_pred --------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCc
Q ss_pred hHHHHHHHHH
Q 005161 659 VEDAVGLVKE 668 (711)
Q Consensus 659 ~~~A~~~~~~ 668 (711)
.+.-..+.++
T Consensus 207 ~~~F~~L~~~ 216 (260)
T PF04190_consen 207 LPLFKKLCEK 216 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 452
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=44.39 E-value=5.3e+02 Score=29.35 Aligned_cols=321 Identities=10% Similarity=0.007 Sum_probs=149.0
Q ss_pred HHHHccCChhhHHHHHHHHhhcCCCC----cHHHHHH---HHHHHHccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005161 336 CSCKDSGHLANAVKIYSHMHICDGKP----NLHIMCT---MIDTYSVMG---MFTEAEKLYLNLKSSGIRLDLIAFTVVV 405 (711)
Q Consensus 336 ~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~---l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 405 (711)
+++.....++.|+..|++....- +- ....|.. ++.-....| .+++|+.-|+.+... +.-+--|..-.
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 559 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESF-PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGKA 559 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcC-CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhHH
Confidence 55666677777888777776541 11 1122222 222223333 367777777777654 12223344444
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCcHHH--------------------HHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 005161 406 RMYVKAGSLKDACAVLETMEKQKDIEPDAYL--------------------YCDMLRIYQQ---CGMLDKLSYLYYKILK 462 (711)
Q Consensus 406 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------------------~~~l~~~~~~---~~~~~~a~~~~~~~~~ 462 (711)
-.|-+.|++++-++.+....+..+..|...- +.-++-+..- .-...+-..+|+.+..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYH 639 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHh
Confidence 4566778888888777777676665553221 1111111111 0111122233333322
Q ss_pred cC-------CCCChhh-----HHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 005161 463 SG-------ITWNQEL-----YDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMA 530 (711)
Q Consensus 463 ~~-------~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 530 (711)
.- +.+.+.+ +..++..+ .|..---.++|+...+. ++.......+-+.+..|.++-+.+....+
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (932)
T PRK13184 640 KQQATLFCQLDKTPLQFRSSKMELFLSFW--SGFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDIL 714 (932)
T ss_pred hccCCceeeccCchhhhhhhhHHHHHHHH--hcCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 21 1111111 22222221 23333444555555543 34455555555567788887777766655
Q ss_pred HHcCC----Cch---------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCCHHHHHHH
Q 005161 531 KKLGL----VDV---------ISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEA--YNSMLDAYGKEGQMENFKNV 595 (711)
Q Consensus 531 ~~~~~----~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~ 595 (711)
.+... +.. ..|..-+.+......++++.+.+.. .+|.... +..++.-..-.++.+....+
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (932)
T PRK13184 715 AEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN-----TDPTLILYAFDLFAIQALLDEEGESIIQL 789 (932)
T ss_pred HHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh-----CCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 53221 111 1122224445555556666554333 2333222 22222223333444444455
Q ss_pred HHHHHHcCCCCCHH---HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH--hccCChHHHHHHHHHHH
Q 005161 596 LRRMKETSCTFDHY---TYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAY--GIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 596 ~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 670 (711)
.+.+...- .|... ....-+.+|.-..++++|-+++...-..-.. +..+...++.+| +-.++-+-|...|....
T Consensus 790 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 790 LQLIYDYV-SEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLL-DEYSEAFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHhcc-CChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhc-cccchHHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 55444431 22211 2344556777778888888888654432111 222223333333 34556666666666665
Q ss_pred H
Q 005161 671 E 671 (711)
Q Consensus 671 ~ 671 (711)
+
T Consensus 868 ~ 868 (932)
T PRK13184 868 E 868 (932)
T ss_pred c
Confidence 3
No 453
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.29 E-value=3.9e+02 Score=27.80 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=28.6
Q ss_pred cCChHHHHHHHHHHhHcC-----------CCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 005161 28 RGCVELGAKWFHMMLECD-----------VQPNVATFGMLMGLYKKSWNVEEAEFAFNQM 76 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 76 (711)
...+.+|.+-|..+...- .+-.+.+...+..++..+|+.+.|..+..+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~ 310 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERG 310 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 344566777676666532 1222334455666777788877776666554
No 454
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=44.09 E-value=5.3e+02 Score=29.32 Aligned_cols=290 Identities=12% Similarity=0.065 Sum_probs=148.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH-------HHHHHHHcCC---hHHHHHHHHHHHhcCCCCCcHHHH
Q 005161 368 TMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTV-------VVRMYVKAGS---LKDACAVLETMEKQKDIEPDAYLY 437 (711)
Q Consensus 368 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~ 437 (711)
++-+++.....++.|...|+.+..+ ++--...|.+ ++.--...|+ +++|+.-|+.+ ++.+.-+--|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 555 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRES-FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL---HGGVGAPLEY 555 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhc-CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh---cCCCCCchHH
Confidence 3446777888899999999999876 3222333332 2222233444 67777777777 3323334445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCChh--------------------hHHHHHHHHH---ccCCHHHHHHHHH
Q 005161 438 CDMLRIYQQCGMLDKLSYLYYKILKSG-ITWNQE--------------------LYDCVINCCA---RALPIDELSRVFD 493 (711)
Q Consensus 438 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--------------------~~~~l~~~~~---~~~~~~~a~~~~~ 493 (711)
..-.-.|.+.|++++=.+.+....++- ..|-.. ++.-++-+.. ..-...+-..+|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLE 635 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 555667888898888777666655442 222211 1111111111 1112223344444
Q ss_pred HHHhCC-------CCccHHHH-----HHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 005161 494 EMLQHG-------FTPNIITL-----NVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTV 561 (711)
Q Consensus 494 ~~~~~~-------~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 561 (711)
.+..+- +.+++..+ ..++.. =.|..---.++|+++... ++..+.....-..+..|+++-+.+..
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (932)
T PRK13184 636 ILYHKQQATLFCQLDKTPLQFRSSKMELFLSF--WSGFTPFLPELFQRAWDL--RDYRALADIFYVACDLGNWEFFSQFS 711 (932)
T ss_pred HHHhhccCCceeeccCchhhhhhhhHHHHHHH--HhcCchhhHHHHHHHhhc--ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 443321 11222111 111111 134444445555555443 34455555666668899998887776
Q ss_pred HHHHHC----CCCCCh--------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhhcCCHHHH
Q 005161 562 QEMQFD----GFSVSL--------EAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHY--TYNIMIDIYGEQGWINEV 627 (711)
Q Consensus 562 ~~~~~~----~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A 627 (711)
+.+.+. ..+.+. ..|-.-+.+.....+++++.+.+... +|... .+..++.-....++.+..
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (932)
T PRK13184 712 DILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT-----DPTLILYAFDLFAIQALLDEEGESI 786 (932)
T ss_pred HHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC-----CHHHHHHHHHHHHHHHHHhccchHH
Confidence 666532 111111 12333345555555666666544332 33333 333333333344555555
Q ss_pred HHHHHHHHHCCCCCC---hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 628 VGVLTELKECGLRPD---LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 628 ~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
..+.+.+... ..|. .......+++|.-..++++|-+++++...
T Consensus 787 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (932)
T PRK13184 787 IQLLQLIYDY-VSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPL 832 (932)
T ss_pred HHHHHHHHhc-cCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCCh
Confidence 5555555443 2222 22345567888899999999999976543
No 455
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.85 E-value=1.9e+02 Score=30.34 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=52.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhhcCCHH------HHHHHHHHHHHCCCCCChHhHHHH
Q 005161 578 SMLDAYGKEGQMENFKNVLRRMKET--SCTFDHYTYNIMIDIYGEQGWIN------EVVGVLTELKECGLRPDLCSYNTL 649 (711)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~p~~~~~~~l 649 (711)
++..+|...|++-.+.++++.+... |-+.-...+|..++...+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7889999999999999999988753 22223457788888888888754 3444444433 45567788777
Q ss_pred HHHHhc
Q 005161 650 IKAYGI 655 (711)
Q Consensus 650 ~~~~~~ 655 (711)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766554
No 456
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=42.73 E-value=1.9e+02 Score=23.74 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=35.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHcCC------CchhHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHH
Q 005161 508 NVMLDIYGKAKLFKRVRKLFSMAKKLGL------VDVISYNTIIAAYGQNKN-LESMSSTVQEMQFDGFSVSLEAYNSML 580 (711)
Q Consensus 508 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 580 (711)
+.++.-....++......+++.+....+ .+...|..++.+.....- --.+..+++-+.+.+.++++..|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444444555555555544422211 233445555555433333 223344455555444555555555555
Q ss_pred HHHHh
Q 005161 581 DAYGK 585 (711)
Q Consensus 581 ~~~~~ 585 (711)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 54443
No 457
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=42.30 E-value=66 Score=28.48 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=47.0
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005161 59 LYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV 116 (711)
Q Consensus 59 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 116 (711)
...+.|+.+.|.+++.++.+.-|.....|..+...--+.|+++.|...+++.++.++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3456788888888888888888877788888888888888888888888888876543
No 458
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.12 E-value=2.7e+02 Score=26.16 Aligned_cols=44 Identities=5% Similarity=0.018 Sum_probs=29.6
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 558 SSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKE 601 (711)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (711)
.++|+.+...++.|.-..+..+.-.+.+.=.+.+.+.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34566666667777777766666666666677777777777764
No 459
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.69 E-value=1.5e+02 Score=27.24 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=13.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 005161 403 VVVRMYVKAGSLKDACAVLETM 424 (711)
Q Consensus 403 ~l~~~~~~~~~~~~A~~~~~~~ 424 (711)
.+..-|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3455566666666666666665
No 460
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.04 E-value=2.8e+02 Score=24.85 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC-CCChHhH--HHHHHHHhccCChHHHHHHHHHHHHcCCCCCcc
Q 005161 603 SCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGL-RPDLCSY--NTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKI 679 (711)
Q Consensus 603 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 679 (711)
.+.+...-+|.|+--|.-...+.+|.+.|.+-..-.. .+|..++ ..-+......|+.++|++..+.+.-.-+.-|..
T Consensus 21 ~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 21 KVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred ccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Q ss_pred hHHHHHHH----HHhcchHHHHHHHHHH
Q 005161 680 TYTNMITA----LQRNDKFLEAIKWSLW 703 (711)
Q Consensus 680 ~~~~l~~~----~~~~~~~~~A~~~~~~ 703 (711)
.+..+... +.+.|+.++|+++.+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 461
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.66 E-value=1.9e+02 Score=22.98 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHH
Q 005161 625 NEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVK 667 (711)
Q Consensus 625 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 667 (711)
++..++|..|..+|+-.. ...|...+..+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 446778888888777655 5667777888888899999988876
No 462
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.37 E-value=3.9e+02 Score=26.39 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIR 111 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (711)
..+..+..-|..+|+++.|++.+.++..--... ...|..++..-.-.|++.....+..+..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 344555566666666666666666644322211 3345555555555555555555554443
No 463
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=38.27 E-value=82 Score=31.29 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=26.4
Q ss_pred CCCCCC--hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 637 CGLRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 637 ~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
..+.|. .-++..-+..+.+.+++..|-.+.+++++ +.|+.
T Consensus 292 c~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLe--l~p~~ 333 (422)
T PF06957_consen 292 CKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLE--LNPSP 333 (422)
T ss_dssp S---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHC--T--SC
T ss_pred CCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--cCCCH
Confidence 345554 34556667778899999999999999998 55543
No 464
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.39 E-value=2e+02 Score=24.42 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 87 YSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
...++..+...+..-.|.++++.+.+.++.++..|....+..+...|
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33344444434444444555555544444444444333444444433
No 465
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=37.25 E-value=3.1e+02 Score=24.67 Aligned_cols=139 Identities=17% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 005161 120 ENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGW 199 (711)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 199 (711)
.+....+..|.+.-++.-|-...+.+.+ ...+--++++ |.+..+.+--.++.+-....++.-+.....+++ +
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIE-----PIQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhh-----hHHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--h
Q ss_pred HhcCCHHHHHHHHHHHHhcC------------CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHH
Q 005161 200 GRAGNYREAKWYYKELKHLG------------YKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQA 267 (711)
Q Consensus 200 ~~~g~~~~A~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 267 (711)
...|+..+|+..++.-...- -.|.+.....++..|.. +++++|.+++.++-+.|..+.+....+.+.
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~FRv 281 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITTLFRV 281 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHHHH
No 466
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=37.04 E-value=5.2e+02 Score=28.12 Aligned_cols=85 Identities=12% Similarity=-0.015 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHhH-cCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC--------------CchhHHHHHHHHHH
Q 005161 31 VELGAKWFHMMLE-CDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGL--------------VCESAYSAMITIYT 95 (711)
Q Consensus 31 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~l~~~~~ 95 (711)
.++...++....+ .|+.-+......+++.. .|++..|..+++.+...+. ........++..+.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 3444455544443 45666666666555543 5888888888877654221 11223555666655
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC
Q 005161 96 RLSLYEKAEEVIRLIREDKVVPN 118 (711)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~ 118 (711)
. ++...++.+++++...|..+.
T Consensus 258 ~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCCCHH
Confidence 5 899999999999999886543
No 467
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=36.88 E-value=2.2e+02 Score=22.90 Aligned_cols=32 Identities=13% Similarity=-0.077 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLV 82 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 82 (711)
.++..++-.+...|+++.|+++.+.+.+.+..
T Consensus 49 ~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 49 DVLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred chHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 34455566666677777777777777666654
No 468
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.74 E-value=37 Score=26.98 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=22.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005161 584 GKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDI 617 (711)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (711)
.+.|.-..|-.+|++|++.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3456667778888888888877764 6666654
No 469
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.51 E-value=4.9e+02 Score=26.77 Aligned_cols=100 Identities=10% Similarity=-0.025 Sum_probs=58.0
Q ss_pred HHHHHHHHh-HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 34 GAKWFHMML-ECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 34 a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
..+.+.... ..|+..+......+.+ ...|++..|+.+++.+...... ..++..+ .++.
T Consensus 185 i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~-~it~~~V-----------------~~~l- 243 (484)
T PRK14956 185 LQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDS-KLTGVKI-----------------RKMI- 243 (484)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCC-CcCHHHH-----------------HHHh-
Confidence 334444443 3466666666655554 3579999999999886543211 1111111 1111
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005161 113 DKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVA 156 (711)
Q Consensus 113 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 156 (711)
|.. +...+..++.+....+....|...+.++.+.|..|....
T Consensus 244 -g~~-~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 244 -GYH-GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred -CCC-CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 222 555666667766555556788888888888887665543
No 470
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=36.42 E-value=2.1e+02 Score=22.46 Aligned_cols=84 Identities=17% Similarity=0.084 Sum_probs=45.6
Q ss_pred HhcCChHHHHHHHHHHhH-cCCCCCHh----------hHHHHHHHHHccCCHHHHHHHHH-------HHHHcCCCchhHH
Q 005161 26 NKRGCVELGAKWFHMMLE-CDVQPNVA----------TFGMLMGLYKKSWNVEEAEFAFN-------QMRKLGLVCESAY 87 (711)
Q Consensus 26 ~~~~~~~~a~~~~~~~~~-~~~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~-------~~~~~~~~~~~~~ 87 (711)
...|.+++|..-++...+ +..-|... .+..|..++...|++++++.--+ +=-+.+...-..|
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 356788887776655543 22223333 33467778888999887655333 3223332223445
Q ss_pred HHHH----HHHHhcCCHHHHHHHHHH
Q 005161 88 SAMI----TIYTRLSLYEKAEEVIRL 109 (711)
Q Consensus 88 ~~l~----~~~~~~~~~~~a~~~~~~ 109 (711)
...+ .++-..|+.++|+..|+.
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 4433 566677888888887775
No 471
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.33 E-value=3.8e+02 Score=25.41 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=33.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005161 404 VVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKS 463 (711)
Q Consensus 404 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 463 (711)
+..+-.+.|+..+|.+.|+++.++..+..-......++.++....-+.++..++.+.-+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 333444568888888888887655432222223445666666665555555555544433
No 472
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.20 E-value=2e+02 Score=22.14 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
-|..++..|...|.+++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 367777778888888888888877665
No 473
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=36.06 E-value=2.1e+02 Score=25.03 Aligned_cols=60 Identities=17% Similarity=0.071 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC-ESAYSAMITIYTRLSLYEKAEEVIRLI 110 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 110 (711)
.....++..+.-.|+++.|.++|.-+.+....+ ...|..=+.++.+.+.-....+.++.+
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 344567788888899999999998888765544 345666666666666555444444433
No 474
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=36.03 E-value=3.2e+02 Score=24.40 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=12.0
Q ss_pred HHHHhhcCCHHHHHHHHHHHHH
Q 005161 615 IDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 615 ~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
.....+.|+.++|.+.|.+++.
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHc
Confidence 3444555555555555555554
No 475
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=35.62 E-value=4.1e+02 Score=25.50 Aligned_cols=115 Identities=7% Similarity=-0.035 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc------CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhhcCCHH
Q 005161 553 NLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKE------GQMENFKNVLRRMKETSCTFDHY-TYNIMIDIYGEQGWIN 625 (711)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 625 (711)
-++++..++++....+ .|.+......+.++... -+|..-..+|+.+... .|+++ +.|-.+. ..+..-.+
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~--apSPvV~LNRAVA-la~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA--APSPVVTLNRAVA-LAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh--CCCCeEeehHHHH-HHHhhhHH
Confidence 3566666666666665 36666665555544321 2555566666666553 34433 3333332 22333345
Q ss_pred HHHHHHHHHHHCCCCCChH-hHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 626 EVVGVLTELKECGLRPDLC-SYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 626 ~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
.++.+.+-+.+.+--.+.. .+..-...+.+.|+.++|...|++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 5666666555532111112 223334556666777777777777665
No 476
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.52 E-value=1.1e+02 Score=20.95 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=23.1
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR 96 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (711)
|....++.++.++++..-++.+.-.+.+....+..+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555554444444444444433
No 477
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=35.39 E-value=1.2e+02 Score=19.53 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=9.0
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 005161 198 GWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 198 ~~~~~g~~~~A~~~~~~~~~ 217 (711)
++.+.|++++|.+..+.+.+
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 33444455555444444444
No 478
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=34.86 E-value=7.5e+02 Score=28.37 Aligned_cols=130 Identities=16% Similarity=0.166 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLIR-EDKV--VPNLENWLVMLNAYSQ-QGKLEEAELVLVSMREAGFSPNIVAYNTLM 161 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~--~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (711)
.....++-+...++|.+|+.+.++-+ +.++ .-++..|..=+..+.+ .++.+-.-..+..+.+.++ +...|....
T Consensus 696 LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDv--t~tmY~~~~ 773 (928)
T PF04762_consen 696 LVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDV--TKTMYKDTY 773 (928)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccc--ccccccccc
Confidence 34455666777788888777766532 2221 1234444444444443 3444444444444443221 111111111
Q ss_pred ------------HHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhc
Q 005161 162 ------------TGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAG--NYREAKWYYKELKHL 218 (711)
Q Consensus 162 ------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~ 218 (711)
......+++......+....+.. .....-...++.+|++.+ +++.|+....++.+.
T Consensus 774 ~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 774 PPSSEAQPNSNSSTASSESKVNKICDAIRKALEKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred ccccccccccccCCCccccHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 11223344555555444433211 122333466778888887 788888888888765
No 479
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.97 E-value=4.8e+02 Score=25.84 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCC
Q 005161 85 SAYSAMITIYTRLSLYEKAEEVIRLIRED--KVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREA---------GFSPN 153 (711)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 153 (711)
.++.-+..-|...|+++.|++.|.+..+- ........+..+|..-.-.|+|........+..+. .+++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 46677777788888888888888775442 11112334555555555556665555444444332 23445
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHH
Q 005161 154 IVAYNTLMTGYGKVSNMEAAQRLFLS 179 (711)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 179 (711)
...+..|.....+ ++..|.+.|-.
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~ 254 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLL 254 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 5666666655443 56666555543
No 480
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.26 E-value=2.4e+02 Score=28.05 Aligned_cols=98 Identities=12% Similarity=-0.010 Sum_probs=0.0
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHH-----HhHcCCCCCHhhHH-------HHHHHHHccCCHHHHHHHHHHH-----
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHM-----MLECDVQPNVATFG-------MLMGLYKKSWNVEEAEFAFNQM----- 76 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~----- 76 (711)
+...-..++.++....+..+-++.... ....+.......+. .|+++.+-.||+..|+++++.+
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Q ss_pred ---HHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 77 ---RKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIR 111 (711)
Q Consensus 77 ---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (711)
.+..+....++..++-+|.-.+++.+|.+.|..++
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PRK09857 putative transposase; Provisional
Probab=33.02 E-value=3e+02 Score=26.03 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005161 89 AMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPN 153 (711)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 153 (711)
.++....+.++.++..++++.+.... .........++.-+.+.|.-+++.++...|...|+..+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~-~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERS-PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444445566555566665555432 22333444556666666666777778888888776654
No 482
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.47 E-value=3.1e+02 Score=23.27 Aligned_cols=57 Identities=5% Similarity=-0.101 Sum_probs=28.5
Q ss_pred HCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCC
Q 005161 252 NMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGL 308 (711)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 308 (711)
+.|...+.-...++..+...++.-.|.++++.+...++..+..+....+..+...|-
T Consensus 19 ~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 19 QRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 334444444444455554455555566666665555555444444444444444443
No 483
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.41 E-value=2.4e+02 Score=23.29 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=36.5
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCCh
Q 005161 598 RMKETSCTFDHYTYNIMIDIYGEQ-GWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMV 659 (711)
Q Consensus 598 ~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 659 (711)
.+.+.|+.++..-. .++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-.
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455666665432 333444443 45678888888888776555655555556666677654
No 484
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.44 E-value=6.3e+02 Score=26.43 Aligned_cols=118 Identities=14% Similarity=0.024 Sum_probs=65.1
Q ss_pred cCCHHHHHHHHHHHHHcC------------CCchhHHHHHHHHHHhcCCHHHHHHHHHHHH-------hCCCCCC-----
Q 005161 63 SWNVEEAEFAFNQMRKLG------------LVCESAYSAMITIYTRLSLYEKAEEVIRLIR-------EDKVVPN----- 118 (711)
Q Consensus 63 ~g~~~~A~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~----- 118 (711)
...+++|...|....... |....+...+..++..+|+.+.|..+.++.+ ...+.|.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 446778888888766533 2234567777888888888887777666532 1111111
Q ss_pred --------HHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-hccCChHHHHHHHHHH
Q 005161 119 --------LENWL---VMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGY-GKVSNMEAAQRLFLSI 180 (711)
Q Consensus 119 --------~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~ 180 (711)
..-|. .-+..+.+.|-+..|.+.-+.+.+..+..|+.....+|..| .+..+|+-..++++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11111 12344445566666666655555554444555555555554 2445555555555554
No 485
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=30.96 E-value=1.1e+02 Score=17.71 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 005161 87 YSAMITIYTRLSLYEKAEEVI 107 (711)
Q Consensus 87 ~~~l~~~~~~~~~~~~a~~~~ 107 (711)
+..+...+-..|++++|+++|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~ 24 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFF 24 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 445555566666666666663
No 486
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.64 E-value=7.9e+02 Score=27.36 Aligned_cols=30 Identities=10% Similarity=0.127 Sum_probs=19.8
Q ss_pred hHhHHHHHHH---HHhcCChHHHHHHHHHHhHc
Q 005161 15 FQLFNTLIYA---CNKRGCVELGAKWFHMMLEC 44 (711)
Q Consensus 15 ~~~~~~~l~~---~~~~~~~~~a~~~~~~~~~~ 44 (711)
....+.-+.. +...|++.+|.+.|+..+-+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~ 1020 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYS 1020 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 3334555543 23578999999999887754
No 487
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=30.00 E-value=2.2e+02 Score=20.74 Aligned_cols=46 Identities=9% Similarity=0.114 Sum_probs=39.5
Q ss_pred HHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 005161 36 KWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGL 81 (711)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 81 (711)
++|+.....|+.-|..+|..+++.+.-.-.++...++++.+.....
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~~~ 74 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSGSR 74 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcccc
Confidence 8999999999999999999999988777788888888888876543
No 488
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.89 E-value=99 Score=21.08 Aligned_cols=53 Identities=13% Similarity=0.038 Sum_probs=42.5
Q ss_pred CCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccC
Q 005161 11 AKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSW 64 (711)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 64 (711)
+.|....++.++..+++-.-.+.+...+..+.+.| .-+..+|..-++.+++..
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 45778889999999999889999999999999998 467788877777776643
No 489
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=29.88 E-value=5.5e+02 Score=25.31 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=27.1
Q ss_pred HHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCcc
Q 005161 278 PRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFE 327 (711)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 327 (711)
..+++..+...+. |...--.+++.|...|-...|.+.|..+.-+++..|
T Consensus 203 i~lLE~~l~~s~~-n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~D 251 (365)
T PF09797_consen 203 IALLEHALKKSPH-NYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLD 251 (365)
T ss_pred HHHHHHHHHcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHH
Confidence 3344444444433 555555566666666666666666666655555433
No 490
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=29.65 E-value=5.1e+02 Score=24.87 Aligned_cols=116 Identities=8% Similarity=0.114 Sum_probs=56.2
Q ss_pred hhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHc------cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChHH
Q 005161 344 LANAVKIYSHMHICDGKPNLHIMCTMIDTYSV------MGMFTEAEKLYLNLKSSGIRLDLI-AFTVVVRMYVKAGSLKD 416 (711)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 416 (711)
++++..++.+....+ .|........|.++-. .-+|.....+|+.+.... |+++ +.|-- -+..+..-++.
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a--pSPvV~LNRA-VAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAA--PSPVVTLNRA-VALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC--CCCeEeehHH-HHHHHhhhHHh
Confidence 345555555555544 3555555555544421 124556666666665543 3332 22222 22334444556
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005161 417 ACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKS 463 (711)
Q Consensus 417 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 463 (711)
++.+.+-+........-...+..-...+.+.|..++|..-|++....
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 66666665443333323333344445555666666666666655544
No 491
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.48 E-value=3.9e+02 Score=25.24 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=26.3
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 349 KIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKS 391 (711)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 391 (711)
++++.+...++.|.-.+|..+.-.+...=.+.+++.+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555565666666666666555555555566666666666654
No 492
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.09 E-value=1.2e+02 Score=28.47 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 005161 437 YCDMLRIYQQCGMLDKLSYLYYKILKSGITW 467 (711)
Q Consensus 437 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 467 (711)
|+.-|....+.||+++|+.++++..+.|..-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 4566666666666666666666666666543
No 493
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.04 E-value=5.4e+02 Score=24.91 Aligned_cols=83 Identities=13% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCC---CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 005161 506 TLNVMLDIYGKAKLFKRVRKLFSMAKKLGL---VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDA 582 (711)
Q Consensus 506 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 582 (711)
++.--+......-..++...+++.+.+.-| .-...|..++......|.++.++.+|++++..|..|-...-..+++.
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q ss_pred HHhcCC
Q 005161 583 YGKEGQ 588 (711)
Q Consensus 583 ~~~~g~ 588 (711)
+-..+.
T Consensus 185 L~~k~~ 190 (353)
T PF15297_consen 185 LKMKSQ 190 (353)
T ss_pred HHhhhh
No 494
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.01 E-value=7.6e+02 Score=26.61 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=50.4
Q ss_pred HHHHHHHHH-hHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC--------------CchhHHHHHHHHHHhc
Q 005161 33 LGAKWFHMM-LECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGL--------------VCESAYSAMITIYTRL 97 (711)
Q Consensus 33 ~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~ 97 (711)
+..+++... .+.|+..+......++.. ..|++..|+.+++++...+. .+......++..+..
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~- 263 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ- 263 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-
Confidence 334444333 345666666666655553 45788888887776543221 112334555555544
Q ss_pred CCHHHHHHHHHHHHhCCCCCC
Q 005161 98 SLYEKAEEVIRLIREDKVVPN 118 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~ 118 (711)
|+...++.+++++...|..+.
T Consensus 264 ~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 264 GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 889999999999998876643
No 495
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=28.58 E-value=8.9e+02 Score=27.28 Aligned_cols=21 Identities=14% Similarity=-0.001 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHCCCCChhHH
Q 005161 241 EGAVNTLDDMLNMGCQHSSIL 261 (711)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~ 261 (711)
+.+..+++.+....|+..+.+
T Consensus 1092 e~~~k~~~~l~s~ypd~lpll 1112 (1304)
T KOG1114|consen 1092 EEAEKIYNYLKSSYPDYLPLL 1112 (1304)
T ss_pred HHHHHHHHHHHHhCcccchHH
Confidence 447777777777666544333
No 496
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=28.47 E-value=6.4e+02 Score=29.43 Aligned_cols=156 Identities=9% Similarity=-0.055 Sum_probs=96.3
Q ss_pred HhccCcHHHHHH------HHH-HHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH-------HHCCCCCChhhHHHH
Q 005161 514 YGKAKLFKRVRK------LFS-MAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEM-------QFDGFSVSLEAYNSM 579 (711)
Q Consensus 514 ~~~~~~~~~a~~------~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l 579 (711)
....|.+.++.+ ++. .+....+.....|..+...+-+.++.++|+..-... ....-+.+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 334555666655 555 444445567778888999999999999888754432 222223344455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC----C---CCChHh
Q 005161 580 LDAYGKEGQMENFKNVLRRMKET-----S-CTFD-HYTYNIMIDIYGEQGWINEVVGVLTELKECG----L---RPDLCS 645 (711)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---~p~~~~ 645 (711)
.-.+...+....|...+.+.... | ..|. ..+++.+-..+...++++.|.++.+.+.+.. . -+...+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 55566667777777777766531 1 1233 3344444444445578889999888887621 1 123456
Q ss_pred HHHHHHHHhccCChHHHHHHHHHH
Q 005161 646 YNTLIKAYGIAGMVEDAVGLVKEM 669 (711)
Q Consensus 646 ~~~l~~~~~~~g~~~~A~~~~~~~ 669 (711)
+..+...+...+++..|....+.-
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhH
Confidence 777778888888877776665543
No 497
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=28.43 E-value=3e+02 Score=21.71 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=30.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHH----cC-CCCCc-chH----HHHHHHHHhcchHHHHHHHHHH
Q 005161 645 SYNTLIKAYGIAGMVEDAVGLVKEMRE----NG-IEPDK-ITY----TNMITALQRNDKFLEAIKWSLW 703 (711)
Q Consensus 645 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~~-~~~----~~l~~~~~~~~~~~~A~~~~~~ 703 (711)
.+..|..++...|++++++...+..+. +| +.-|. ..| ..-..++...|+.++|++.|+.
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 455566667777777766655554431 11 33332 222 2333456667888888777764
No 498
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.14 E-value=4.9e+02 Score=28.81 Aligned_cols=111 Identities=16% Similarity=0.066 Sum_probs=55.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHH
Q 005161 292 NLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMID 371 (711)
Q Consensus 292 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 371 (711)
+..+|..|+......|+.+-|...|++.+. |..|--.|.-.|+.++-.++.+....+ .|..+. ..
T Consensus 671 d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r---~D~~~~---~q 735 (1202)
T KOG0292|consen 671 DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR---NDATGQ---FQ 735 (1202)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh---hhhHHH---HH
Confidence 555666777777777777666666655432 333333445556666555554444322 122111 11
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 005161 372 TYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEK 426 (711)
Q Consensus 372 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 426 (711)
...-.|+.++-..++...... | ..|.. -...|.-+.|.++.++...
T Consensus 736 nalYl~dv~ervkIl~n~g~~---~--laylt----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 736 NALYLGDVKERVKILENGGQL---P--LAYLT----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHhccHHHHHHHHHhcCcc---c--HHHHH----HhhcCcHHHHHHHHHhhcc
Confidence 122346666666655443321 1 11111 1234666777777776644
No 499
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=27.95 E-value=2.1e+02 Score=19.92 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 65 NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL 97 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (711)
+.+.|..++..+.......+..||++...+.+.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 455666666666655555566777766665543
No 500
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.86 E-value=8.8e+02 Score=27.00 Aligned_cols=170 Identities=14% Similarity=0.094 Sum_probs=86.0
Q ss_pred HHHHhcCChHHHHHHHHHHhHcCCCCCHh--hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCH
Q 005161 23 YACNKRGCVELGAKWFHMMLECDVQPNVA--TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLY 100 (711)
Q Consensus 23 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (711)
+.|.+.|+++.|++.-+. +|+.. ++..-...|.+.+++..|-+.+....+ .+..+.--+....+.
T Consensus 366 k~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~-------~FEEVaLKFl~~~~~ 432 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS-------SFEEVALKFLEINQE 432 (911)
T ss_pred HHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-------hHHHHHHHHHhcCCH
Confidence 567788888888765433 23322 233344556677888888888877622 344444444555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHH-hcCCH----HHHHHHHHHHHH--------cC-CCCCHHHHHHHH
Q 005161 101 EKAEEVIRLIREDKVVPNLENWLV-----MLNAYS-QQGKL----EEAELVLVSMRE--------AG-FSPNIVAYNTLM 161 (711)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~-~~~~~----~~a~~~~~~~~~--------~~-~~~~~~~~~~l~ 161 (711)
+ ++..|-.=+-.++.|...+-.. ++..|. +.++. +++.+-++.-.+ .. ...+.....+..
T Consensus 433 ~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~ 511 (911)
T KOG2034|consen 433 R-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVY 511 (911)
T ss_pred H-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHH
Confidence 5 4443333222333333332222 222222 22222 233222221111 00 011222223333
Q ss_pred HHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 162 TGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKEL 215 (711)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 215 (711)
..+...|+.+....+-.-+.+ |..++.-+++.|.+++|++++..-
T Consensus 512 ~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 512 QLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444556666666655554443 666777888888888888877653
Done!