Query 005161
Match_columns 711
No_of_seqs 644 out of 2973
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 17:15:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.5E-40 2.9E-44 346.7 43.1 298 401-707 275-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.4E-39 1.2E-43 342.0 43.1 309 370-688 279-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 5.6E-28 1.9E-32 240.6 47.3 382 22-448 6-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-27 5.1E-32 237.5 48.0 383 56-483 5-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 6.5E-29 2.2E-33 249.4 21.4 198 15-237 26-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 2E-28 6.7E-33 245.9 21.2 214 453-691 9-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 7.5E-24 2.6E-28 220.0 42.1 273 398-678 186-482 (514)
8 2gw1_A Mitochondrial precursor 99.9 5.1E-24 1.7E-28 221.3 40.7 439 15-462 6-477 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.6E-22 5.3E-27 206.0 38.4 306 12-323 23-359 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 2.2E-22 7.6E-27 204.8 38.7 392 32-453 9-444 (450)
11 3fp2_A TPR repeat-containing p 99.9 6.6E-23 2.2E-27 214.1 34.9 433 191-678 27-495 (537)
12 3fp2_A TPR repeat-containing p 99.9 1.2E-22 4.1E-27 212.1 36.8 431 259-709 26-493 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 5.7E-20 1.9E-24 180.9 37.9 302 14-320 2-333 (359)
14 1xi4_A Clathrin heavy chain; a 99.9 4.8E-17 1.6E-21 172.8 61.1 569 13-665 983-1585(1630)
15 1xi4_A Clathrin heavy chain; a 99.9 2E-16 6.8E-21 168.1 65.6 469 20-550 903-1413(1630)
16 3ieg_A DNAJ homolog subfamily 99.9 1.6E-19 5.6E-24 177.7 36.8 334 49-410 2-352 (359)
17 3hym_B Cell division cycle pro 99.9 1.4E-19 4.8E-24 175.7 32.8 289 10-303 17-314 (330)
18 2ooe_A Cleavage stimulation fa 99.9 3.7E-18 1.3E-22 176.6 44.1 416 39-498 3-492 (530)
19 3hym_B Cell division cycle pro 99.9 5.2E-19 1.8E-23 171.7 33.1 271 46-321 18-298 (330)
20 2ooe_A Cleavage stimulation fa 99.8 7.9E-17 2.7E-21 166.7 45.9 428 247-707 2-492 (530)
21 2xm6_A Protein corresponding t 99.8 6.7E-16 2.3E-20 158.0 50.6 352 292-673 38-433 (490)
22 2xm6_A Protein corresponding t 99.8 6.9E-16 2.4E-20 157.9 50.5 363 34-463 26-432 (490)
23 1fch_A Peroxisomal targeting s 99.8 8.3E-19 2.8E-23 173.1 26.1 257 27-286 37-313 (368)
24 4eqf_A PEX5-related protein; a 99.8 5.6E-18 1.9E-22 166.8 26.6 267 49-318 64-352 (365)
25 1fch_A Peroxisomal targeting s 99.8 1E-17 3.5E-22 165.2 27.8 265 14-282 63-354 (368)
26 4eqf_A PEX5-related protein; a 99.8 6.2E-18 2.1E-22 166.5 23.8 266 14-283 64-352 (365)
27 3cv0_A Peroxisome targeting si 99.8 2.2E-17 7.6E-22 159.9 27.2 279 15-319 21-312 (327)
28 1b89_A Protein (clathrin heavy 99.8 2.6E-17 9E-22 156.5 25.9 283 62-421 15-305 (449)
29 3cv0_A Peroxisome targeting si 99.8 2.2E-17 7.4E-22 160.0 25.0 231 13-247 53-309 (327)
30 1b89_A Protein (clathrin heavy 99.8 2.8E-17 9.6E-22 156.3 24.7 281 27-349 15-303 (449)
31 4g1t_A Interferon-induced prot 99.8 5.2E-16 1.8E-20 158.7 34.4 384 48-464 49-460 (472)
32 3mkr_A Coatomer subunit epsilo 99.8 1.7E-16 5.9E-21 148.8 26.4 257 22-290 6-267 (291)
33 3mkr_A Coatomer subunit epsilo 99.8 1.1E-16 3.7E-21 150.2 25.0 253 59-324 8-266 (291)
34 4g1t_A Interferon-induced prot 99.8 2.4E-15 8.1E-20 153.8 37.1 202 153-356 50-275 (472)
35 2pl2_A Hypothetical conserved 99.7 1E-15 3.6E-20 137.0 21.7 199 12-215 2-211 (217)
36 4e6h_A MRNA 3'-END-processing 99.7 2.1E-12 7.2E-17 133.6 46.0 290 30-321 47-406 (679)
37 2pl2_A Hypothetical conserved 99.7 3.2E-15 1.1E-19 133.9 21.6 199 47-250 2-211 (217)
38 3uq3_A Heat shock protein STI1 99.7 6.8E-15 2.3E-19 136.8 23.7 226 15-254 5-237 (258)
39 3spa_A Mtrpol, DNA-directed RN 99.7 8.1E-17 2.8E-21 165.7 10.3 136 537-677 126-265 (1134)
40 2h6f_A Protein farnesyltransfe 99.7 1.5E-14 5.3E-19 140.0 25.8 248 15-268 97-363 (382)
41 3uq3_A Heat shock protein STI1 99.7 1.6E-14 5.4E-19 134.3 23.3 225 50-286 5-235 (258)
42 2h6f_A Protein farnesyltransfe 99.7 1.9E-14 6.6E-19 139.3 24.3 248 50-303 97-363 (382)
43 3e4b_A ALGK; tetratricopeptide 99.7 4.9E-14 1.7E-18 141.5 27.6 377 299-705 9-419 (452)
44 3u4t_A TPR repeat-containing p 99.7 3.2E-14 1.1E-18 133.3 24.8 245 14-262 2-259 (272)
45 3spa_A Mtrpol, DNA-directed RN 99.7 1.5E-16 5.2E-21 163.7 9.4 116 119-234 127-246 (1134)
46 3e4b_A ALGK; tetratricopeptide 99.6 8.7E-14 3E-18 139.7 28.4 104 125-238 9-120 (452)
47 3u4t_A TPR repeat-containing p 99.6 4.1E-14 1.4E-18 132.6 24.5 240 51-324 4-252 (272)
48 2vq2_A PILW, putative fimbrial 99.6 2.7E-13 9.3E-18 122.8 26.5 201 15-217 8-210 (225)
49 4e6h_A MRNA 3'-END-processing 99.6 2.5E-11 8.4E-16 125.6 43.9 456 66-619 48-585 (679)
50 2ho1_A Type 4 fimbrial biogene 99.6 2.5E-13 8.5E-18 125.5 26.6 199 16-217 38-237 (252)
51 1ouv_A Conserved hypothetical 99.6 1.4E-12 4.9E-17 121.9 31.8 188 16-217 7-214 (273)
52 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.7E-14 2.3E-18 131.4 22.8 243 448-701 19-269 (275)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.1E-14 1.4E-18 132.9 20.9 226 25-255 15-246 (275)
54 2ho1_A Type 4 fimbrial biogene 99.6 2.6E-13 8.9E-18 125.4 25.9 206 50-258 37-243 (252)
55 2vq2_A PILW, putative fimbrial 99.6 3.4E-13 1.2E-17 122.1 26.2 213 47-261 5-219 (225)
56 2q7f_A YRRB protein; TPR, prot 99.6 4.1E-14 1.4E-18 130.0 20.3 198 16-217 24-221 (243)
57 1ouv_A Conserved hypothetical 99.6 1.8E-12 6E-17 121.3 31.3 227 48-290 4-254 (273)
58 2q7f_A YRRB protein; TPR, prot 99.6 7.2E-14 2.4E-18 128.4 20.7 218 47-268 20-237 (243)
59 4a1s_A PINS, partner of inscut 99.6 9.8E-14 3.4E-18 138.9 18.8 279 399-706 49-371 (411)
60 2ond_A Cleavage stimulation fa 99.6 3.1E-12 1.1E-16 121.7 27.4 238 15-256 8-273 (308)
61 3sf4_A G-protein-signaling mod 99.5 8.9E-13 3E-17 131.8 23.1 301 362-694 8-363 (406)
62 3sf4_A G-protein-signaling mod 99.5 2.9E-13 9.8E-18 135.4 19.5 240 12-252 6-295 (406)
63 4a1s_A PINS, partner of inscut 99.5 1.1E-13 3.6E-18 138.7 16.3 97 227-323 266-373 (411)
64 3vtx_A MAMA; tetratricopeptide 99.5 2.2E-12 7.4E-17 112.4 22.4 168 48-218 3-170 (184)
65 3ro2_A PINS homolog, G-protein 99.5 3.8E-13 1.3E-17 130.6 19.0 276 401-707 8-332 (338)
66 3vtx_A MAMA; tetratricopeptide 99.5 2.3E-12 7.7E-17 112.3 21.1 167 14-183 4-170 (184)
67 2ond_A Cleavage stimulation fa 99.5 9.6E-12 3.3E-16 118.3 26.9 216 67-286 33-269 (308)
68 4abn_A Tetratricopeptide repea 99.5 1.3E-12 4.4E-17 132.0 20.5 212 485-704 84-318 (474)
69 3ro2_A PINS homolog, G-protein 99.5 7.1E-13 2.4E-17 128.7 17.9 116 18-134 8-138 (338)
70 3ulq_A Response regulator aspa 99.5 1.1E-11 3.7E-16 122.4 25.9 229 440-671 109-367 (383)
71 3ulq_A Response regulator aspa 99.5 6.5E-12 2.2E-16 124.0 23.9 229 475-706 109-367 (383)
72 4abn_A Tetratricopeptide repea 99.5 1.8E-12 6.1E-17 131.0 19.9 211 65-279 83-313 (474)
73 3nf1_A KLC 1, kinesin light ch 99.4 1.3E-12 4.4E-17 125.1 13.2 243 51-321 28-306 (311)
74 3nf1_A KLC 1, kinesin light ch 99.4 3.5E-12 1.2E-16 122.1 15.7 253 84-357 27-307 (311)
75 3q15_A PSP28, response regulat 99.4 1.2E-10 3.9E-15 114.7 25.9 227 477-706 109-364 (378)
76 3q15_A PSP28, response regulat 99.4 4.9E-10 1.7E-14 110.2 27.9 163 471-636 184-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.4 6.7E-11 2.3E-15 103.1 19.4 165 15-182 8-172 (186)
78 1hz4_A MALT regulatory protein 99.4 1.9E-10 6.6E-15 113.1 24.8 233 20-252 19-281 (373)
79 4gyw_A UDP-N-acetylglucosamine 99.3 4.4E-11 1.5E-15 125.5 20.8 165 15-182 9-173 (723)
80 4gyw_A UDP-N-acetylglucosamine 99.3 4.7E-11 1.6E-15 125.3 20.2 168 48-218 7-174 (723)
81 1hz4_A MALT regulatory protein 99.3 8.5E-10 2.9E-14 108.4 28.0 300 401-709 17-351 (373)
82 4i17_A Hypothetical protein; T 99.3 1.7E-10 6E-15 104.3 21.1 196 14-219 6-210 (228)
83 3as5_A MAMA; tetratricopeptide 99.3 1.2E-10 4E-15 101.6 19.0 165 51-218 9-173 (186)
84 4i17_A Hypothetical protein; T 99.3 3.4E-10 1.2E-14 102.4 20.8 199 467-678 5-213 (228)
85 3edt_B KLC 2, kinesin light ch 99.2 9.7E-11 3.3E-15 110.2 13.4 228 479-707 11-281 (283)
86 1qqe_A Vesicular transport pro 99.2 6.8E-10 2.3E-14 104.4 17.9 160 58-217 45-227 (292)
87 3edt_B KLC 2, kinesin light ch 99.2 2.7E-10 9.1E-15 107.2 15.2 227 26-253 12-281 (283)
88 3urz_A Uncharacterized protein 99.2 9.3E-10 3.2E-14 97.4 17.2 109 20-130 9-133 (208)
89 3urz_A Uncharacterized protein 99.2 1.1E-09 3.9E-14 96.8 17.5 170 51-226 5-192 (208)
90 3qky_A Outer membrane assembly 99.2 1.4E-09 4.9E-14 100.5 18.7 101 14-115 14-128 (261)
91 3dra_A Protein farnesyltransfe 99.2 3.8E-08 1.3E-12 91.0 27.4 233 20-256 37-291 (306)
92 3qky_A Outer membrane assembly 99.2 1.4E-09 4.9E-14 100.5 18.0 205 468-696 14-250 (261)
93 2uy1_A Cleavage stimulation fa 99.2 3.5E-07 1.2E-11 92.0 36.3 385 11-462 11-412 (493)
94 3mv2_B Coatomer subunit epsilo 99.1 3.3E-08 1.1E-12 90.2 25.9 182 488-678 85-286 (310)
95 3mv2_B Coatomer subunit epsilo 99.1 6.1E-09 2.1E-13 95.0 20.6 183 69-257 85-286 (310)
96 2uy1_A Cleavage stimulation fa 99.1 1.1E-07 3.6E-12 95.8 31.4 125 364-497 287-412 (493)
97 2fo7_A Synthetic consensus TPR 99.1 4E-09 1.4E-13 86.0 17.5 128 18-147 4-131 (136)
98 3dra_A Protein farnesyltransfe 99.1 4.1E-08 1.4E-12 90.9 25.3 245 58-335 40-300 (306)
99 2pzi_A Probable serine/threoni 99.1 1.1E-09 3.6E-14 116.0 16.6 153 26-182 402-562 (681)
100 1qqe_A Vesicular transport pro 99.1 3.4E-09 1.2E-13 99.6 18.4 201 15-217 37-268 (292)
101 2yhc_A BAMD, UPF0169 lipoprote 99.1 8.9E-09 3E-13 92.5 20.1 187 14-219 3-214 (225)
102 4ga2_A E3 SUMO-protein ligase 99.1 4.4E-10 1.5E-14 93.2 10.7 143 24-169 6-149 (150)
103 2fo7_A Synthetic consensus TPR 99.1 6.5E-09 2.2E-13 84.8 17.5 128 53-182 4-131 (136)
104 3qou_A Protein YBBN; thioredox 99.1 3.7E-09 1.3E-13 98.8 17.5 167 47-216 114-282 (287)
105 2r5s_A Uncharacterized protein 99.1 1.3E-09 4.6E-14 93.5 13.3 163 52-217 8-172 (176)
106 2r5s_A Uncharacterized protein 99.0 2.3E-09 7.8E-14 92.0 13.2 164 16-182 7-172 (176)
107 4ga2_A E3 SUMO-protein ligase 99.0 9E-10 3.1E-14 91.3 10.2 145 56-203 3-148 (150)
108 2pzi_A Probable serine/threoni 99.0 8.7E-09 3E-13 109.0 20.3 173 61-239 402-583 (681)
109 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.5E-08 8.5E-13 89.5 20.0 191 49-258 3-218 (225)
110 3rjv_A Putative SEL1 repeat pr 99.0 3.3E-08 1.1E-12 87.6 19.7 174 487-671 4-196 (212)
111 3qou_A Protein YBBN; thioredox 99.0 7.8E-09 2.7E-13 96.6 16.1 169 12-182 114-283 (287)
112 3rjv_A Putative SEL1 repeat pr 99.0 4.6E-08 1.6E-12 86.7 19.7 178 32-220 3-199 (212)
113 2vsy_A XCC0866; transferase, g 99.0 1.5E-08 5.2E-13 105.5 17.9 154 28-184 2-158 (568)
114 2vsy_A XCC0866; transferase, g 98.9 2.7E-08 9.1E-13 103.7 18.4 150 518-671 3-156 (568)
115 4f3v_A ESX-1 secretion system 98.9 5.2E-08 1.8E-12 87.7 16.2 192 62-256 18-240 (282)
116 3q7a_A Farnesyltransferase alp 98.9 2.1E-06 7.1E-11 80.2 27.2 110 60-171 64-176 (349)
117 4gco_A Protein STI-1; structur 98.9 5.3E-08 1.8E-12 77.5 14.4 94 54-148 17-110 (126)
118 2ifu_A Gamma-SNAP; membrane fu 98.9 3.8E-08 1.3E-12 93.1 15.9 198 28-251 4-222 (307)
119 3q7a_A Farnesyltransferase alp 98.9 1.4E-06 4.6E-11 81.5 25.5 177 24-204 63-257 (349)
120 3dss_A Geranylgeranyl transfer 98.8 2.6E-06 8.8E-11 79.2 26.2 235 24-264 38-315 (331)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.1E-07 7.1E-12 82.8 18.5 129 17-149 8-151 (213)
122 4gco_A Protein STI-1; structur 98.8 1.3E-07 4.3E-12 75.4 15.2 108 16-125 14-121 (126)
123 2ifu_A Gamma-SNAP; membrane fu 98.8 8.2E-08 2.8E-12 90.8 16.3 173 28-216 29-222 (307)
124 3gyz_A Chaperone protein IPGC; 98.8 5.9E-08 2E-12 79.7 13.1 100 49-149 35-134 (151)
125 3u3w_A Transcriptional activat 98.8 3.1E-06 1.1E-10 79.4 26.3 161 511-671 82-265 (293)
126 3u3w_A Transcriptional activat 98.8 6.3E-07 2.2E-11 84.2 21.2 162 91-252 82-265 (293)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4E-07 1.4E-11 80.9 18.6 124 543-671 11-149 (213)
128 1a17_A Serine/threonine protei 98.8 2.9E-07 9.8E-12 78.0 16.0 127 17-145 15-143 (166)
129 2qfc_A PLCR protein; TPR, HTH, 98.8 5.4E-07 1.8E-11 84.7 19.1 162 543-704 80-263 (293)
130 3gyz_A Chaperone protein IPGC; 98.8 1.2E-07 4E-12 77.9 12.6 104 10-114 30-134 (151)
131 2vgx_A Chaperone SYCD; alterna 98.7 4.9E-08 1.7E-12 80.4 10.1 99 49-148 20-118 (148)
132 2lni_A Stress-induced-phosphop 98.7 2.5E-07 8.6E-12 74.8 14.3 118 12-131 13-130 (133)
133 2c2l_A CHIP, carboxy terminus 98.7 3.7E-08 1.3E-12 91.6 10.3 194 14-217 3-198 (281)
134 1a17_A Serine/threonine protei 98.7 4.1E-07 1.4E-11 77.0 15.9 126 52-179 15-142 (166)
135 1na0_A Designed protein CTPR3; 98.7 4.4E-07 1.5E-11 72.3 15.1 98 16-114 10-107 (125)
136 3dss_A Geranylgeranyl transfer 98.7 5.8E-06 2E-10 76.9 24.3 194 61-258 40-272 (331)
137 4f3v_A ESX-1 secretion system 98.7 6.5E-08 2.2E-12 87.1 10.8 189 27-219 18-238 (282)
138 2vyi_A SGTA protein; chaperone 98.7 2.8E-07 9.7E-12 74.2 14.0 117 15-133 12-128 (131)
139 2e2e_A Formate-dependent nitri 98.7 1E-07 3.4E-12 81.9 11.4 123 25-149 20-145 (177)
140 2qfc_A PLCR protein; TPR, HTH, 98.7 3E-06 1E-10 79.5 22.5 166 506-671 77-265 (293)
141 2vgx_A Chaperone SYCD; alterna 98.7 1.1E-07 3.8E-12 78.3 10.7 112 70-183 7-118 (148)
142 2vyi_A SGTA protein; chaperone 98.7 3.4E-07 1.2E-11 73.8 13.2 119 49-169 11-129 (131)
143 2lni_A Stress-induced-phosphop 98.7 4.2E-07 1.4E-11 73.5 13.7 117 48-166 14-130 (133)
144 2e2e_A Formate-dependent nitri 98.7 1.7E-07 6E-12 80.4 11.8 123 60-184 20-145 (177)
145 1na0_A Designed protein CTPR3; 98.7 7.4E-07 2.5E-11 71.0 14.8 113 50-164 9-121 (125)
146 2c2l_A CHIP, carboxy terminus 98.6 1.3E-07 4.6E-12 87.8 11.3 95 506-601 6-100 (281)
147 3upv_A Heat shock protein STI1 98.6 6.8E-07 2.3E-11 71.4 13.9 98 15-113 4-101 (126)
148 1p5q_A FKBP52, FK506-binding p 98.6 5.8E-07 2E-11 86.0 15.6 150 29-181 127-292 (336)
149 3gw4_A Uncharacterized protein 98.6 2.9E-07 9.9E-12 81.1 12.5 83 27-110 4-92 (203)
150 3gw4_A Uncharacterized protein 98.6 3.2E-07 1.1E-11 80.8 12.7 157 61-217 3-175 (203)
151 2xcb_A PCRH, regulatory protei 98.6 2.3E-07 7.9E-12 76.0 10.2 97 51-148 19-115 (142)
152 1elw_A TPR1-domain of HOP; HOP 98.6 2.1E-06 7.1E-11 67.5 15.6 99 15-114 4-102 (118)
153 2xcb_A PCRH, regulatory protei 98.6 6.6E-07 2.2E-11 73.2 12.5 100 14-114 17-116 (142)
154 1p5q_A FKBP52, FK506-binding p 98.6 1.1E-06 3.7E-11 84.0 15.2 155 62-218 125-294 (336)
155 3upv_A Heat shock protein STI1 98.6 9.7E-07 3.3E-11 70.5 12.6 98 50-148 4-101 (126)
156 1elw_A TPR1-domain of HOP; HOP 98.5 3.2E-06 1.1E-10 66.4 15.1 110 50-161 4-113 (118)
157 4gcn_A Protein STI-1; structur 98.5 1.8E-06 6.1E-11 68.8 13.1 97 52-148 10-112 (127)
158 2kck_A TPR repeat; tetratricop 98.5 1.4E-06 4.7E-11 67.8 12.2 97 16-113 7-106 (112)
159 4gcn_A Protein STI-1; structur 98.5 1.1E-06 3.7E-11 70.1 11.4 101 575-680 10-118 (127)
160 1hxi_A PEX5, peroxisome target 98.5 9.2E-07 3.2E-11 69.7 10.9 94 18-112 20-113 (121)
161 3sz7_A HSC70 cochaperone (SGT) 98.5 1.8E-06 6.1E-11 72.8 13.1 100 14-114 10-109 (164)
162 1hxi_A PEX5, peroxisome target 98.5 1.3E-06 4.4E-11 68.9 10.9 96 52-148 19-114 (121)
163 2fbn_A 70 kDa peptidylprolyl i 98.5 2.4E-06 8.2E-11 74.7 13.5 131 49-181 37-184 (198)
164 3sz7_A HSC70 cochaperone (SGT) 98.4 3.4E-06 1.1E-10 71.1 13.6 100 49-149 10-109 (164)
165 3q49_B STIP1 homology and U bo 98.4 4.6E-06 1.6E-10 67.6 13.6 96 15-111 9-104 (137)
166 3q49_B STIP1 homology and U bo 98.4 5.4E-06 1.9E-10 67.2 13.9 100 48-148 7-106 (137)
167 2kck_A TPR repeat; tetratricop 98.4 3.6E-06 1.2E-10 65.3 12.2 99 50-148 6-106 (112)
168 2dba_A Smooth muscle cell asso 98.4 9.3E-06 3.2E-10 66.9 15.3 97 51-148 29-128 (148)
169 2dba_A Smooth muscle cell asso 98.4 9.5E-06 3.3E-10 66.8 14.9 111 13-126 26-140 (148)
170 2fbn_A 70 kDa peptidylprolyl i 98.4 4.3E-06 1.5E-10 73.1 13.3 156 61-218 15-186 (198)
171 1elr_A TPR2A-domain of HOP; HO 98.4 3E-06 1E-10 68.0 11.2 95 17-112 6-107 (131)
172 1elr_A TPR2A-domain of HOP; HO 98.4 2.4E-06 8.3E-11 68.6 10.4 110 51-162 5-120 (131)
173 2xev_A YBGF; tetratricopeptide 98.4 1.6E-05 5.5E-10 63.5 14.9 92 21-113 8-105 (129)
174 2xev_A YBGF; tetratricopeptide 98.3 1.8E-05 6.1E-10 63.3 14.7 96 54-149 6-106 (129)
175 3k9i_A BH0479 protein; putativ 98.3 1.7E-06 5.8E-11 67.9 7.9 88 27-114 2-91 (117)
176 2hr2_A Hypothetical protein; a 98.3 1.6E-05 5.5E-10 64.2 12.4 97 16-112 12-130 (159)
177 4b4t_Q 26S proteasome regulato 98.2 4.1E-05 1.4E-09 76.6 18.5 196 476-671 11-244 (434)
178 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.1E-05 3.6E-10 80.9 14.0 123 50-174 268-405 (457)
179 4b4t_Q 26S proteasome regulato 98.2 7E-05 2.4E-09 74.9 20.1 195 58-252 12-244 (434)
180 3rkv_A Putative peptidylprolyl 98.2 1.4E-05 4.7E-10 67.1 12.4 100 15-114 11-127 (162)
181 1wao_1 Serine/threonine protei 98.2 3.5E-06 1.2E-10 84.7 9.7 118 24-143 15-134 (477)
182 1dce_A Protein (RAB geranylger 98.2 7.8E-05 2.7E-09 76.3 19.6 137 27-166 40-190 (567)
183 3ro3_A PINS homolog, G-protein 98.2 1.4E-05 4.9E-10 66.9 11.7 95 576-670 52-156 (164)
184 1ihg_A Cyclophilin 40; ppiase 98.2 1.3E-05 4.5E-10 77.4 12.6 89 84-174 273-361 (370)
185 1wao_1 Serine/threonine protei 98.2 5.2E-06 1.8E-10 83.5 10.1 120 57-178 13-134 (477)
186 2hr2_A Hypothetical protein; a 98.1 3.4E-05 1.2E-09 62.3 12.0 95 52-147 13-130 (159)
187 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.2E-05 7.6E-10 78.5 13.7 154 62-217 246-414 (457)
188 3rkv_A Putative peptidylprolyl 98.1 3.4E-05 1.2E-09 64.6 12.8 98 50-148 11-126 (162)
189 1ihg_A Cyclophilin 40; ppiase 98.1 2.4E-05 8.1E-10 75.6 13.2 89 119-209 273-361 (370)
190 3ro3_A PINS homolog, G-protein 98.1 1.8E-05 6.1E-10 66.4 11.0 96 16-111 10-116 (164)
191 2if4_A ATFKBP42; FKBP-like, al 98.1 9.1E-06 3.1E-10 77.6 10.0 148 16-183 180-328 (338)
192 1dce_A Protein (RAB geranylger 98.1 0.00018 6E-09 73.7 19.3 188 65-276 44-244 (567)
193 3k9i_A BH0479 protein; putativ 98.1 6.1E-06 2.1E-10 64.6 6.8 87 62-149 2-91 (117)
194 2if4_A ATFKBP42; FKBP-like, al 98.0 2.1E-05 7.2E-10 75.1 9.9 146 53-218 182-328 (338)
195 3n71_A Histone lysine methyltr 98.0 7.4E-05 2.5E-09 74.4 13.4 125 583-707 319-464 (490)
196 2kat_A Uncharacterized protein 97.9 4.2E-05 1.4E-09 59.5 9.0 81 32-113 2-82 (115)
197 2l6j_A TPR repeat-containing p 97.9 7.9E-06 2.7E-10 63.3 4.7 62 52-113 6-67 (111)
198 2l6j_A TPR repeat-containing p 97.9 1.3E-05 4.4E-10 62.1 5.4 93 14-107 3-101 (111)
199 1zu2_A Mitochondrial import re 97.9 2.9E-05 1E-09 62.5 7.3 94 26-122 13-127 (158)
200 1na3_A Designed protein CTPR2; 97.9 0.00017 5.9E-09 53.0 10.8 77 17-94 11-87 (91)
201 1na3_A Designed protein CTPR2; 97.9 0.00014 4.6E-09 53.6 10.1 80 50-130 9-88 (91)
202 1klx_A Cysteine rich protein B 97.8 0.00049 1.7E-08 55.3 14.0 109 553-672 10-126 (138)
203 1zu2_A Mitochondrial import re 97.8 6.5E-05 2.2E-09 60.5 8.0 98 61-161 13-131 (158)
204 1klx_A Cysteine rich protein B 97.8 0.00095 3.2E-08 53.6 14.5 110 519-638 10-127 (138)
205 2kat_A Uncharacterized protein 97.8 0.00013 4.6E-09 56.6 9.2 80 68-148 3-82 (115)
206 3n71_A Histone lysine methyltr 97.7 0.00022 7.7E-09 70.9 11.5 123 549-671 320-463 (490)
207 3ma5_A Tetratricopeptide repea 97.7 0.00018 6.2E-09 54.0 8.4 66 47-112 4-69 (100)
208 3ma5_A Tetratricopeptide repea 97.4 0.00083 2.8E-08 50.3 8.7 67 80-147 3-69 (100)
209 3lvg_A Clathrin heavy chain 1; 97.3 4.4E-07 1.5E-11 85.4 -12.2 234 49-317 53-286 (624)
210 3ly7_A Transcriptional activat 97.3 0.011 3.8E-07 55.2 16.4 75 605-683 274-348 (372)
211 2kc7_A BFR218_protein; tetratr 97.3 0.00055 1.9E-08 51.2 6.3 57 58-114 8-65 (99)
212 3lvg_A Clathrin heavy chain 1; 97.2 3E-06 1E-10 80.0 -8.0 74 544-629 460-533 (624)
213 3ly7_A Transcriptional activat 97.2 0.0069 2.3E-07 56.6 14.2 125 520-648 215-348 (372)
214 2kc7_A BFR218_protein; tetratr 97.2 0.00066 2.3E-08 50.8 6.4 83 20-111 5-88 (99)
215 3bee_A Putative YFRE protein; 97.2 0.0038 1.3E-07 45.5 10.1 70 47-116 3-75 (93)
216 3u64_A Protein TP_0956; tetrat 97.1 0.023 7.7E-07 50.7 15.7 91 135-227 179-280 (301)
217 3qww_A SET and MYND domain-con 96.9 0.0027 9.2E-08 62.1 9.3 87 585-671 310-410 (433)
218 3qww_A SET and MYND domain-con 96.9 0.003 1E-07 61.8 9.5 87 550-636 310-410 (433)
219 3bee_A Putative YFRE protein; 96.9 0.0095 3.2E-07 43.4 9.9 69 605-677 3-75 (93)
220 3qwp_A SET and MYND domain-con 96.7 0.0077 2.6E-07 59.0 10.7 92 580-671 294-399 (429)
221 3u64_A Protein TP_0956; tetrat 96.7 0.022 7.5E-07 50.8 12.3 95 66-160 179-283 (301)
222 3qwp_A SET and MYND domain-con 96.7 0.0061 2.1E-07 59.7 9.8 93 544-636 293-399 (429)
223 1pc2_A Mitochondria fission pr 96.7 0.016 5.6E-07 46.0 10.3 82 32-114 15-101 (152)
224 2v5f_A Prolyl 4-hydroxylase su 96.7 0.015 5.2E-07 43.6 9.9 77 13-89 3-85 (104)
225 1pc2_A Mitochondria fission pr 96.5 0.024 8.1E-07 45.1 10.1 84 65-148 13-100 (152)
226 4ady_A RPN2, 26S proteasome re 96.4 1.3 4.5E-05 47.2 40.8 263 405-671 381-657 (963)
227 1wy6_A Hypothetical protein ST 96.3 0.23 8E-06 37.8 14.1 63 437-500 94-156 (172)
228 3mkq_A Coatomer beta'-subunit; 96.2 0.22 7.5E-06 54.2 19.8 44 481-530 664-707 (814)
229 3mkq_A Coatomer beta'-subunit; 96.2 0.23 8E-06 54.0 19.4 102 88-216 633-734 (814)
230 2v5f_A Prolyl 4-hydroxylase su 96.1 0.048 1.6E-06 40.8 9.8 70 607-678 4-79 (104)
231 4h7y_A Dual specificity protei 96.1 0.094 3.2E-06 41.0 11.0 31 14-44 12-48 (161)
232 4h7y_A Dual specificity protei 96.0 0.11 3.9E-06 40.5 11.1 63 203-266 74-136 (161)
233 3mkq_B Coatomer subunit alpha; 96.0 0.51 1.7E-05 38.6 15.7 104 57-180 12-115 (177)
234 3mkq_B Coatomer subunit alpha; 95.7 0.52 1.8E-05 38.6 14.4 44 131-180 17-60 (177)
235 1nzn_A CGI-135 protein, fissio 95.6 0.098 3.4E-06 39.9 9.3 84 519-602 16-103 (126)
236 4ady_A RPN2, 26S proteasome re 95.6 3.1 0.0001 44.5 43.0 155 479-636 500-657 (963)
237 1wy6_A Hypothetical protein ST 95.4 0.67 2.3E-05 35.4 15.1 64 610-674 93-156 (172)
238 1nzn_A CGI-135 protein, fissio 95.0 0.24 8.1E-06 37.8 9.6 84 65-148 16-103 (126)
239 4b4t_P 26S proteasome regulato 93.6 6 0.0002 38.8 21.4 50 448-497 30-84 (445)
240 4gns_B Protein CSD3, chitin bi 92.7 0.64 2.2E-05 48.5 10.8 60 260-320 339-398 (754)
241 4gns_B Protein CSD3, chitin bi 92.1 1.1 3.8E-05 46.8 11.7 54 511-564 344-397 (754)
242 3o48_A Mitochondria fission 1 91.2 1.5 5.1E-05 33.6 8.5 66 536-601 38-106 (134)
243 3o48_A Mitochondria fission 1 91.0 3.5 0.00012 31.7 10.4 71 604-678 36-111 (134)
244 2ff4_A Probable regulatory pro 91.0 1.5 5.3E-05 42.1 10.9 129 12-158 109-249 (388)
245 3ffl_A Anaphase-promoting comp 90.6 3.2 0.00011 33.4 10.3 25 86-110 65-89 (167)
246 3ffl_A Anaphase-promoting comp 90.5 2.7 9.2E-05 33.8 9.8 143 7-164 10-165 (167)
247 4b4t_P 26S proteasome regulato 89.8 16 0.00054 35.8 25.4 190 28-217 29-246 (445)
248 1y8m_A FIS1; mitochondria, unk 89.6 6.1 0.00021 30.8 12.3 70 605-678 36-110 (144)
249 1v54_E Cytochrome C oxidase po 89.4 4.1 0.00014 29.3 8.8 46 591-636 28-73 (109)
250 1v54_E Cytochrome C oxidase po 89.0 5 0.00017 28.9 9.5 51 485-535 26-76 (109)
251 2wpv_A GET4, UPF0363 protein Y 88.6 14 0.00049 33.7 18.5 163 404-600 39-215 (312)
252 4fhn_B Nucleoporin NUP120; pro 87.8 13 0.00044 41.9 16.8 52 159-215 817-868 (1139)
253 2ff4_A Probable regulatory pro 87.8 3.3 0.00011 39.8 10.5 67 509-575 176-247 (388)
254 2qx5_A Nucleoporin NIC96; mRNA 86.9 17 0.00059 37.3 15.4 41 160-201 158-198 (661)
255 4fhn_B Nucleoporin NUP120; pro 86.9 45 0.0015 37.5 21.3 57 259-320 813-869 (1139)
256 1zbp_A Hypothetical protein VP 85.8 4.3 0.00015 35.8 9.0 60 23-83 5-64 (273)
257 2y69_E Cytochrome C oxidase su 85.3 11 0.00037 28.9 9.5 59 486-544 70-128 (152)
258 2y69_E Cytochrome C oxidase su 85.2 8 0.00027 29.6 8.8 59 591-650 71-129 (152)
259 3lpz_A GET4 (YOR164C homolog); 83.8 27 0.00091 32.2 20.9 82 536-636 134-215 (336)
260 1zbp_A Hypothetical protein VP 83.2 5.1 0.00017 35.3 8.3 56 59-114 6-61 (273)
261 4b4t_R RPN7, 26S proteasome re 82.1 15 0.0005 35.8 12.3 98 539-636 132-236 (429)
262 3esl_A Checkpoint serine/threo 81.0 12 0.0004 31.3 9.2 53 624-676 95-148 (202)
263 1y8m_A FIS1; mitochondria, unk 79.6 20 0.00068 28.0 12.8 69 47-115 36-108 (144)
264 2uwj_G Type III export protein 79.4 15 0.0005 26.3 8.0 15 93-107 48-62 (115)
265 4b4t_R RPN7, 26S proteasome re 79.2 10 0.00036 36.9 10.1 118 65-182 109-236 (429)
266 2p58_C Putative type III secre 79.0 15 0.00052 26.3 8.7 76 65-147 22-97 (116)
267 3txn_A 26S proteasome regulato 77.6 50 0.0017 31.4 20.8 166 435-600 20-208 (394)
268 2uwj_G Type III export protein 77.5 17 0.00058 26.0 7.9 78 99-184 21-98 (115)
269 1qsa_A Protein (soluble lytic 77.2 69 0.0024 32.8 36.1 49 375-424 297-345 (618)
270 2p58_C Putative type III secre 76.9 18 0.00061 25.9 8.6 78 99-184 22-99 (116)
271 3esl_A Checkpoint serine/threo 75.7 16 0.00054 30.6 8.5 56 656-711 92-148 (202)
272 4a1g_A Mitotic checkpoint seri 75.6 23 0.00077 28.1 9.1 53 625-677 82-135 (152)
273 4b4t_S RPN3, 26S proteasome re 75.4 12 0.00042 36.8 9.1 63 50-112 231-298 (523)
274 2wpv_A GET4, UPF0363 protein Y 72.0 59 0.002 29.7 21.1 109 439-562 38-158 (312)
275 3bu8_A Telomeric repeat-bindin 71.7 44 0.0015 28.0 12.2 47 66-112 88-142 (235)
276 2wvi_A Mitotic checkpoint seri 71.1 29 0.00099 27.9 8.8 53 625-677 77-130 (164)
277 1qsa_A Protein (soluble lytic 70.1 1E+02 0.0035 31.6 37.3 201 412-631 228-436 (618)
278 3lpz_A GET4 (YOR164C homolog); 69.6 70 0.0024 29.5 22.4 112 295-421 37-159 (336)
279 4a1g_A Mitotic checkpoint seri 67.4 33 0.0011 27.2 8.3 52 660-711 82-134 (152)
280 1wdy_A 2-5A-dependent ribonucl 64.1 33 0.0011 30.7 9.4 54 620-677 191-247 (285)
281 3txn_A 26S proteasome regulato 63.5 1E+02 0.0036 29.3 27.7 27 364-390 20-46 (394)
282 3kae_A CDC27, possible protein 62.7 48 0.0016 26.7 8.2 37 674-710 202-240 (242)
283 3mkr_B Coatomer subunit alpha; 62.5 91 0.0031 28.4 11.2 93 583-677 112-230 (320)
284 3eiq_C Programmed cell death p 61.6 1E+02 0.0036 28.7 11.9 66 192-258 220-287 (358)
285 2wvi_A Mitotic checkpoint seri 60.8 43 0.0015 27.0 7.9 52 660-711 77-129 (164)
286 1wdy_A 2-5A-dependent ribonucl 60.4 37 0.0013 30.3 9.1 15 59-73 11-25 (285)
287 3t8k_A Uncharacterized protein 58.8 76 0.0026 26.2 10.7 131 581-711 43-184 (186)
288 3ltm_A Alpha-REP4; protein eng 58.5 82 0.0028 26.5 17.4 154 48-217 31-184 (211)
289 4aez_C MAD3, mitotic spindle c 55.7 43 0.0015 28.5 7.5 52 625-676 131-183 (223)
290 3mv2_A Coatomer subunit alpha; 55.3 60 0.002 29.6 8.7 53 623-677 185-239 (325)
291 2zu6_B Programmed cell death p 54.6 87 0.003 28.5 10.0 222 193-415 7-254 (307)
292 2d2s_A Exocyst complex compone 50.4 41 0.0014 29.2 6.8 90 579-671 24-119 (235)
293 2qx5_A Nucleoporin NIC96; mRNA 49.5 2.4E+02 0.0082 29.1 17.8 16 480-495 549-564 (661)
294 4aez_C MAD3, mitotic spindle c 48.2 58 0.002 27.8 7.1 52 660-711 131-183 (223)
295 4b4t_S RPN3, 26S proteasome re 46.6 2.3E+02 0.0078 28.1 12.2 69 189-257 231-303 (523)
296 3bqo_A Telomeric repeat-bindin 44.5 1.3E+02 0.0045 24.9 8.2 15 29-43 39-53 (211)
297 3bu8_A Telomeric repeat-bindin 43.9 73 0.0025 26.8 6.7 66 32-97 89-161 (235)
298 2d2s_A Exocyst complex compone 42.8 1.4E+02 0.0048 25.8 9.0 90 125-217 24-119 (235)
299 1oyz_A Hypothetical protein YI 41.8 1.8E+02 0.0063 25.7 19.4 177 48-239 35-221 (280)
300 2xig_A Ferric uptake regulatio 40.5 1.3E+02 0.0046 23.6 8.8 59 250-308 18-76 (150)
301 2nsz_A Programmed cell death p 40.1 1.2E+02 0.0042 23.1 7.6 19 511-529 14-32 (129)
302 2cos_A Serine/threonine protei 39.7 27 0.00092 21.5 2.7 36 664-704 11-48 (54)
303 2fe3_A Peroxide operon regulat 39.6 1.1E+02 0.0038 23.9 7.3 56 78-133 15-70 (145)
304 3kea_A K1L; tropism, ANK repea 39.2 1.2E+02 0.004 27.2 8.7 13 166-178 170-182 (285)
305 1k1a_A B-cell lymphoma 3-encod 38.5 1.1E+02 0.0038 26.1 8.3 28 21-48 12-39 (241)
306 2xig_A Ferric uptake regulatio 38.2 1.2E+02 0.0042 23.9 7.4 56 78-133 20-75 (150)
307 3eu9_A Huntingtin-interacting 37.7 1.4E+02 0.0047 25.5 8.7 14 374-387 218-231 (240)
308 1ug3_A EIF4GI, eukaryotic prot 37.0 2.6E+02 0.0088 25.9 11.0 25 122-146 14-38 (339)
309 3eyy_A Putative iron uptake re 36.7 1.3E+02 0.0043 23.6 7.2 56 252-308 12-67 (145)
310 2fe3_A Peroxide operon regulat 35.9 1.6E+02 0.0053 23.1 9.2 59 250-308 13-71 (145)
311 4ets_A Ferric uptake regulatio 35.9 1.7E+02 0.0058 23.5 8.0 57 252-308 26-84 (162)
312 2ion_A PDCD4, programmed cell 35.7 95 0.0032 24.6 6.3 18 512-529 17-34 (152)
313 1mzb_A Ferric uptake regulatio 35.5 1.5E+02 0.0051 22.8 7.4 55 253-307 12-67 (136)
314 3eiq_C Programmed cell death p 35.5 2.8E+02 0.0096 25.9 15.2 74 611-688 220-298 (358)
315 1n11_A Ankyrin; clathrin, BAND 35.4 3.1E+02 0.01 26.3 11.8 51 619-678 319-372 (437)
316 1mzb_A Ferric uptake regulatio 34.7 1.1E+02 0.0036 23.7 6.4 55 79-133 12-67 (136)
317 2ijq_A Hypothetical protein; s 33.7 1.8E+02 0.0063 23.2 8.0 51 27-77 44-102 (161)
318 2b7e_A PRE-mRNA processing pro 33.5 28 0.00097 22.1 2.3 29 101-129 3-31 (59)
319 3mwm_A ZUR, putative metal upt 33.3 51 0.0017 25.7 4.4 44 21-64 19-62 (139)
320 3eu9_A Huntingtin-interacting 32.9 50 0.0017 28.4 5.0 49 22-74 13-63 (240)
321 2w57_A Ferric uptake regulatio 32.9 1.2E+02 0.004 24.0 6.5 57 78-134 10-67 (150)
322 3eyy_A Putative iron uptake re 31.5 99 0.0034 24.2 5.8 48 85-133 19-66 (145)
323 2ion_A PDCD4, programmed cell 31.2 1.5E+02 0.0052 23.4 6.8 24 401-424 12-35 (152)
324 2nsz_A Programmed cell death p 30.5 1.8E+02 0.0062 22.2 8.1 24 401-424 10-33 (129)
325 2w57_A Ferric uptake regulatio 30.3 1.6E+02 0.0054 23.2 6.9 35 273-307 32-66 (150)
326 1k1a_A B-cell lymphoma 3-encod 30.0 1.4E+02 0.0046 25.6 7.3 20 130-149 17-36 (241)
327 4ets_A Ferric uptake regulatio 29.1 1.6E+02 0.0054 23.6 6.7 57 78-134 26-84 (162)
328 3bqo_A Telomeric repeat-bindin 28.7 73 0.0025 26.4 4.5 26 88-113 121-146 (211)
329 2r9g_A AAA ATPase, central reg 28.6 2.6E+02 0.0088 23.3 9.6 17 448-464 28-44 (204)
330 2f6m_A Suppressor protein STP2 27.9 99 0.0034 20.1 4.1 44 53-96 5-48 (65)
331 3ph0_C ASCG; type III secretio 26.7 1.2E+02 0.0041 18.9 4.1 9 130-138 51-59 (61)
332 3bge_A Predicted ATPase; struc 26.6 2.8E+02 0.0095 23.1 9.2 21 448-468 21-41 (201)
333 3mwm_A ZUR, putative metal upt 25.8 92 0.0031 24.2 4.7 49 86-134 15-63 (139)
334 1bpo_A Protein (clathrin); cla 25.3 4.8E+02 0.016 25.4 11.1 70 498-567 355-424 (494)
335 4gq2_M Nucleoporin NUP120; bet 25.3 3.5E+02 0.012 29.6 10.6 47 120-166 898-948 (950)
336 3hra_A Ankyrin repeat family p 25.1 1.2E+02 0.0043 24.9 5.9 15 209-223 158-172 (201)
337 2o03_A Probable zinc uptake re 25.1 1.2E+02 0.0039 23.3 5.1 43 22-64 17-59 (131)
338 3jxi_A Vanilloid receptor-rela 24.6 61 0.0021 28.5 4.0 51 130-180 13-72 (260)
339 3ctd_A Putative ATPase, AAA fa 24.4 3.2E+02 0.011 23.0 8.7 92 440-532 38-137 (213)
340 1bpo_A Protein (clathrin); cla 24.1 5.1E+02 0.017 25.2 9.9 35 44-78 355-389 (494)
341 2r9g_A AAA ATPase, central reg 23.8 3.2E+02 0.011 22.8 10.2 57 25-82 24-85 (204)
342 3ubw_A 14-3-3E, 14-3-3 protein 23.6 3.8E+02 0.013 23.6 10.2 175 537-711 30-232 (261)
343 1wgl_A TOLL-interacting protei 23.2 1.5E+02 0.0051 18.8 4.3 21 656-676 36-56 (59)
344 3ltm_A Alpha-REP4; protein eng 22.7 3.3E+02 0.011 22.5 17.7 168 14-200 32-199 (211)
345 3b7b_A Euchromatic histone-lys 21.8 1.4E+02 0.0046 25.5 5.7 74 630-707 159-236 (237)
346 3c1d_A Protein ORAA, regulator 21.5 3.1E+02 0.011 21.8 9.2 49 451-501 47-95 (159)
347 3kea_A K1L; tropism, ANK repea 21.3 3E+02 0.01 24.4 8.0 18 231-248 165-182 (285)
348 3l6a_A Eukaryotic translation 20.9 5.2E+02 0.018 24.2 12.8 24 297-320 16-39 (364)
349 3t5v_B Nuclear mRNA export pro 20.7 5.3E+02 0.018 25.0 9.7 124 15-144 176-320 (455)
350 2rfa_A Transient receptor pote 20.5 2.7E+02 0.0091 23.5 7.3 24 197-220 159-182 (232)
351 1ug3_A EIF4GI, eukaryotic prot 20.3 5.1E+02 0.018 23.9 11.1 26 86-111 13-38 (339)
352 1wty_A Hypothetical protein TT 20.2 2.2E+02 0.0074 21.3 5.6 77 588-671 3-80 (119)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.5e-40 Score=346.67 Aligned_cols=298 Identities=11% Similarity=0.004 Sum_probs=138.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 005161 401 FTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCA 480 (711)
Q Consensus 401 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 480 (711)
|+.++..|.+.|++++|.++|+.+... +++..++..++..|.+.|++++|..+|+++.+.+.. +..++..++.++.
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLH 350 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHH
Confidence 333344444444444444444444222 244444444444444444444444444444443321 3344444444444
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 005161 481 RALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSST 560 (711)
Q Consensus 481 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 560 (711)
+.|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+.+.+..+.+..+|..++..|.+.|++++|+++
T Consensus 351 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555555554444321 233444444444455555555555555544444444444455555555555555555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC---
Q 005161 561 VQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKEC--- 637 (711)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 637 (711)
|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 430 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 430 YTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 55444432 3344444444455555555555555555444431 233444445555555555555555555544442
Q ss_pred -CCCCC--hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 638 -GLRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEP-DKITYTNMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 638 -~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
+..|+ ..+|..++.+|.+.|++++|.+.++++.+ ..| +..+|..++.+|.+.|++++|.++++++.+.
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL--LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 33343 34444555555555555555555555444 223 3344444555555555555555555544443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-39 Score=342.04 Aligned_cols=309 Identities=11% Similarity=-0.008 Sum_probs=169.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCC
Q 005161 370 IDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGM 449 (711)
Q Consensus 370 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 449 (711)
+..|.+.|++++|.++|+.+.+. +++..+++.++.+|.+.|++++|.++|+.+.... +.+..++..++.++.+.|+
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTC
T ss_pred HHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCC
Confidence 33333344444444444433332 2334444444444444444444444444443221 1233334444444444444
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHH
Q 005161 450 LDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSM 529 (711)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 529 (711)
+++|..+++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+++.++.+|.+.|++++|.++|+.
T Consensus 355 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 355 KNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444444322 2234444445555555555555555555554432 23445555666666666666666666666
Q ss_pred HHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC
Q 005161 530 AKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET----SCT 605 (711)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~ 605 (711)
+.+..+.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 665555566666666666666666666666666666543 445566666666666666666666666666553 445
Q ss_pred CC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-cchHH
Q 005161 606 FD--HYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD-KITYT 682 (711)
Q Consensus 606 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~ 682 (711)
|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..++.+|.+.|++++|.+.++++.+ +.|+ ...+.
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~ 588 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASD 588 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHH
Confidence 65 5677777777777777777777777776642 22466777777777777777777777777776 5564 34555
Q ss_pred HHHHHH
Q 005161 683 NMITAL 688 (711)
Q Consensus 683 ~l~~~~ 688 (711)
.+..+|
T Consensus 589 ~l~~~~ 594 (597)
T 2xpi_A 589 LLKRAL 594 (597)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 555444
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=5.6e-28 Score=240.60 Aligned_cols=382 Identities=15% Similarity=0.097 Sum_probs=229.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (711)
...+.+.|++++|.+.+..+++.. +.+...+..+..++...|++++|...++.+.+.+|....+|..++.+|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345667777777777777777654 3445555666666777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 005161 102 KAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIK 181 (711)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 181 (711)
+|+..|+++....+. +..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.
T Consensus 85 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777665433 45567777777777777777777777777654 2344556666667777777777777777776
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHH
Q 005161 182 DVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSIL 261 (711)
Q Consensus 182 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 261 (711)
+..+ .+..+|..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++|...+++.....|....++
T Consensus 163 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 6432 3455666677777777777777777777766532 2344555556666666666666666666665555444444
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHcc
Q 005161 262 GTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDS 341 (711)
Q Consensus 262 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (711)
..++..+...|++++|...+++++..+|. +..+ +..+...+.+.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~-----------------------------------~~~l~~~~~~~ 284 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDA-----------------------------------YCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHH-----------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHH-----------------------------------HHHHHHHHHHc
Confidence 44445555555555555555444444333 3334 44444455555
Q ss_pred CChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005161 342 GHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVL 421 (711)
Q Consensus 342 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 421 (711)
|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+...+.+.|++++|...|
T Consensus 285 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555554432 3344555555555555666666666665555542 223455555556666666666666666
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHcC
Q 005161 422 ETMEKQKDIEPDAYLYCDMLRIYQQCG 448 (711)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 448 (711)
+.+.+.. +.+...|..+...+...|
T Consensus 363 ~~a~~~~--p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 363 KEAIRIS--PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTC--TTCHHHHHHHHHHHHHTC
T ss_pred HHHHhhC--CCCHHHHHhHHHHHHHcc
Confidence 5554322 223444555555444443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.5e-27 Score=237.49 Aligned_cols=383 Identities=15% Similarity=0.079 Sum_probs=305.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKL 135 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 135 (711)
+...+.+.|++++|.+.+..+.+.+|.+..++..+...+...|++++|...++......+. +..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 3456678899999999999999999988888999999999999999999999988876644 778899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 136 EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKEL 215 (711)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 215 (711)
++|...|+++.+.. +.+...|..++.++.+.|++++|...|+++.+..+ .+...+..+...+...|++++|...|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999998874 34667888999999999999999999999887643 34455677888888889999999999998
Q ss_pred HhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhH
Q 005161 216 KHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTS 295 (711)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 295 (711)
.+.. +.+..++..+...+...|++++|...++++.+.+|.....+..+...+...|++++|...+++++..+|. +..+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 239 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHH
Confidence 8763 2246778888888999999999999999988887766666666777777777777777666666655444 4445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHc
Q 005161 296 CSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSV 375 (711)
Q Consensus 296 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (711)
+..+...+...|++++| ...|+++.+.. +.+..++..+...+.+
T Consensus 240 ~~~l~~~~~~~g~~~~A-----------------------------------~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLA-----------------------------------IDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHHTTCHHHH-----------------------------------HHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHH-----------------------------------HHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 55555555555555544 44555554432 3456788999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 005161 376 MGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSY 455 (711)
Q Consensus 376 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 455 (711)
.|++++|.+.++.+.+.. +.+..++..+...+.+.|++++|...++.+.... +.+..++..+..++.+.|++++|..
T Consensus 284 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999874 4578899999999999999999999999986542 4567889999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHccC
Q 005161 456 LYYKILKSGITWNQELYDCVINCCARAL 483 (711)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 483 (711)
.|+++.+... .+...+..+...+...|
T Consensus 361 ~~~~a~~~~p-~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 361 HYKEAIRISP-TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTCT-TCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhCC-CCHHHHHhHHHHHHHcc
Confidence 9999998643 35667777777766554
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.5e-29 Score=249.36 Aligned_cols=198 Identities=15% Similarity=0.168 Sum_probs=173.4
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
..+++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+...++
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------------------------- 80 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------------------------- 80 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------------------------
Confidence 3456777777777777777777777777777777777777777777665542211
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHH
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQ 174 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (711)
.+.+..++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 81 ~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 81 SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH
Confidence 23345788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcC
Q 005161 175 RLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKY 237 (711)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (711)
++|++|.+.|+.||..||++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|...
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999988764
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2e-28 Score=245.87 Aligned_cols=214 Identities=15% Similarity=0.129 Sum_probs=160.5
Q ss_pred HHHHHHHHHhcCCCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 005161 453 LSYLYYKILKSGITWNQ-ELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAK 531 (711)
Q Consensus 453 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 531 (711)
+..+.+++.+.+....+ .+++.+|++|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 34444555555544433 356777888888888888888888888888888888888888887766543221
Q ss_pred HcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005161 532 KLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTY 611 (711)
Q Consensus 532 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 611 (711)
.+.+..++|.++|++|...|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 81 -----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 81 -----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred -----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 123345677888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 005161 612 NIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMITALQRN 691 (711)
Q Consensus 612 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 691 (711)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||..++..+...
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888777654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.5e-24 Score=219.99 Aligned_cols=273 Identities=11% Similarity=-0.051 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHH---cCChHHHHHHHHHHHh-----cCCC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005161 398 LIAFTVVVRMYVK---AGSLKDACAVLETMEK-----QKDI-------EPDAYLYCDMLRIYQQCGMLDKLSYLYYKILK 462 (711)
Q Consensus 398 ~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~-----~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 462 (711)
...+......+.. .|++++|+..|+.+.. .... +.+...+..+...+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444444444 7888888888887755 2111 22355677788888888899999888888887
Q ss_pred cCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHH
Q 005161 463 SGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYN 542 (711)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 542 (711)
.... ...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+..+.+..++.
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 342 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYI 342 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHH
Confidence 7644 7778888888888999999999999888764 445667788888888999999999999999888888888899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHH
Q 005161 543 TIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSC-TFD----HYTYNIMIDI 617 (711)
Q Consensus 543 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~ 617 (711)
.++..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .++ ...+..+...
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 99999999999999999999888763 55677888888999999999999999998876311 111 3378888888
Q ss_pred Hhh---cCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 618 YGE---QGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 618 ~~~---~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
+.. .|++++|...++++.+. .|+ ..++..+..+|...|++++|...++++.+ +.|+.
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~ 482 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTM 482 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hcccc
Confidence 988 89999999999999884 454 77888899999999999999999999988 66764
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.1e-24 Score=221.27 Aligned_cols=439 Identities=10% Similarity=-0.009 Sum_probs=257.0
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...+......+.+.|++++|...|+.+++.+ |+...|..+..++.+.|++++|...|+.+.+.+|....+|..++.+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 4567778889999999999999999999975 78999999999999999999999999999999998899999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHH
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQ 174 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (711)
...|++++|...|+.+...++. +.......+..+.+......+.+.+..+...+..|+......-..............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 9999999999999999887653 444444455544444434444444433322221111111111111111111111111
Q ss_pred HHHHHHHhcCC---------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----cCC--------CccHhhHHH
Q 005161 175 RLFLSIKDVGL---------EPDETTYRSMIEGWGR---AGNYREAKWYYKELKH-----LGY--------KPNASNLYT 229 (711)
Q Consensus 175 ~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~~~~~~~~~ 229 (711)
.+...+..... ..+...+......+.. .|++++|...|+++.+ ... +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11111111111 1123444444444443 7888888888888877 311 123456667
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCH
Q 005161 230 LINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLI 309 (711)
Q Consensus 230 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 309 (711)
+...+...|++++|...++++.+..+. ...+..++..+...|++++|...++.++...+. +..++..+...+...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCH
Confidence 777888888888888888888887777 777777778888888888888888877776554 556666777777777777
Q ss_pred HHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 005161 310 DDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNL 389 (711)
Q Consensus 310 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 389 (711)
++|...+++....++. +...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++.+
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777776666554433 23344445555555555555555555554432 223344444444555555555555555444
Q ss_pred HhCCCC-CC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005161 390 KSSGIR-LD----LIAFTVVVRMYVK---AGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKIL 461 (711)
Q Consensus 390 ~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 461 (711)
.+.... ++ ...+..+...+.. .|++++|...++.+.... +.+..++..+..++...|++++|...|++..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 432110 00 1244444444444 445555555444443321 1223333344444444444444444444443
Q ss_pred h
Q 005161 462 K 462 (711)
Q Consensus 462 ~ 462 (711)
+
T Consensus 477 ~ 477 (514)
T 2gw1_A 477 D 477 (514)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.6e-22 Score=205.97 Aligned_cols=306 Identities=10% Similarity=0.013 Sum_probs=220.1
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHH
Q 005161 12 KLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMI 91 (711)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 91 (711)
+.+...+..+...+.+.|++++|..+|+.+++.. +.+...+..+..++...|++++|...|+++.+.+|....++..++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3456777888888888888888888888888764 556788888888888888888888888888888888788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005161 92 TIYTRLSLYEKAEEVIRLIREDKVVPNL---ENWLVM------------LNAYSQQGKLEEAELVLVSMREAGFSPNIVA 156 (711)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 156 (711)
.+|.+.|++++|...|+.+...++. +. .++..+ ...+.+.|++++|...++++.+.. +.+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 8888888888888888888876533 33 444444 344777888888888888888764 446777
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHH------
Q 005161 157 YNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTL------ 230 (711)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------ 230 (711)
+..++.+|.+.|++++|...|+++.+..+ .+..+|..++..+...|++++|...|+++...... +...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHH
Confidence 88888888888888888888888776542 45677888888888888888888888888765221 23333333
Q ss_pred ------HHHHHcCCCHHHHHHHHHHHHHCCCCCh----hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHH
Q 005161 231 ------INLHAKYEDEEGAVNTLDDMLNMGCQHS----SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILV 300 (711)
Q Consensus 231 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 300 (711)
...+...|++++|...++++.+..+... ..+..++..+.+.|++++|...++.++...+. +..+|..+.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~ 336 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 5666677777777777777776655543 24555566666666666666666666655443 456666666
Q ss_pred HHHHhcCCHHHHHHHHHhhhhcC
Q 005161 301 MAYVKHGLIDDAMKVLGDKRWKD 323 (711)
Q Consensus 301 ~~~~~~g~~~~a~~~~~~~~~~~ 323 (711)
.++...|++++|...++++....
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC
Confidence 66666666666666666665543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.2e-22 Score=204.82 Aligned_cols=392 Identities=14% Similarity=0.062 Sum_probs=246.0
Q ss_pred HHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 32 ELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIR 111 (711)
Q Consensus 32 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (711)
..+...+..++... +.+...+..+...+.+.|++++|...|+.+.+.+|....+|..++.+|...|++++|+..|+++.
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555553 56777888889999999999999999999999888888899999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHH------------HHHhhccCChHHHHHH
Q 005161 112 EDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNI---VAYNTL------------MTGYGKVSNMEAAQRL 176 (711)
Q Consensus 112 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~ 176 (711)
+.++. +..++..++..|.+.|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|...
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 87654 67788899999999999999999999998864 2233 555555 3347778888888888
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 005161 177 FLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ 256 (711)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 256 (711)
|+++.+..+ .+...+..++..+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+..+.
T Consensus 166 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 166 LDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 888776543 466777778888888888888888888887652 235677777888888888888888888888877666
Q ss_pred ChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCcc---HhhHHH
Q 005161 257 HSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFE---DNLYHL 333 (711)
Q Consensus 257 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ 333 (711)
....+..+.... .......++..+...|++++|...|+++....+... ...+..
T Consensus 244 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 244 HKRCFAHYKQVK-----------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKER 300 (450)
T ss_dssp CHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 554443330000 001112224445555555555555555544332210 123444
Q ss_pred HHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-------
Q 005161 334 LICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVR------- 406 (711)
Q Consensus 334 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------- 406 (711)
+...+.+.|++++|+..++.+.+.. +.+..++..+..+|...|++++|...++.+.+.. +-+...+..+..
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhc
Confidence 5555555555555555555554432 2344555555555555566666666665555532 112333333331
Q ss_pred -----HHHHcC-----ChHHHHHHHHHH-Hhc-CCCCCc-------HHHHHHHHHHHHHcCCHHHH
Q 005161 407 -----MYVKAG-----SLKDACAVLETM-EKQ-KDIEPD-------AYLYCDMLRIYQQCGMLDKL 453 (711)
Q Consensus 407 -----~~~~~~-----~~~~A~~~~~~~-~~~-~~~~~~-------~~~~~~l~~~~~~~~~~~~a 453 (711)
.|...| +.+++.+.+++. .+. ....|+ ...+..+..+|...++.+..
T Consensus 379 ~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred ccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 122233 455666666652 111 111122 23567777778777776654
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=6.6e-23 Score=214.09 Aligned_cols=433 Identities=13% Similarity=0.033 Sum_probs=267.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHh
Q 005161 191 TYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEK 270 (711)
Q Consensus 191 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 270 (711)
.|..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...++++++..|.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------------- 91 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-------------- 91 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--------------
Confidence 34444555555555555555555555542 123444555555555555555555555555554444
Q ss_pred cCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHH
Q 005161 271 AGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKI 350 (711)
Q Consensus 271 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 350 (711)
+..++..+...+...|++++|...|+.+ ...+.+. ...+..+...+....|...
T Consensus 92 ---------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~a~~~ 145 (537)
T 3fp2_A 92 ---------------------HSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFD----GASIEPMLERNLNKQAMKV 145 (537)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHH
T ss_pred ---------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCC----hHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555422 1111111 1112222233334455555
Q ss_pred HHHHhhcC------CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH--------HcCChH
Q 005161 351 YSHMHICD------GKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLI-AFTVVVRMYV--------KAGSLK 415 (711)
Q Consensus 351 ~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~~~~~ 415 (711)
++.+.... ..|+... +..+....+.+.+...+...... .+... ....+...+. ..|+++
T Consensus 146 ~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 219 (537)
T 3fp2_A 146 LNENLSKDEGRGSQVLPSNTS----LASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLT 219 (537)
T ss_dssp HHHHCC-------CCCCCHHH----HHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHhCccccccccchHhH----HHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 55554321 1222222 22233344444443332222211 11111 1222222211 124677
Q ss_pred HHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 005161 416 DACAVLETMEKQKDIEPD-----AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSR 490 (711)
Q Consensus 416 ~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 490 (711)
+|+.+++.+....+..++ ..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|+.
T Consensus 220 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 220 KSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHH
Confidence 888888877554322221 2346666677788888888888888888764 336777788888888899999999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005161 491 VFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFS 570 (711)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 570 (711)
.++++.+.. +.+...+..+...+...|++++|...++.+.+..+.+...+..+...+...|++++|...++++.+.. +
T Consensus 298 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 375 (537)
T 3fp2_A 298 FFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-P 375 (537)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 998888754 44677788888888889999999999999888888788888889999999999999999999888764 5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhhc----------CCHHHHHHHHHHHH
Q 005161 571 VSLEAYNSMLDAYGKEGQMENFKNVLRRMKETS-----CTFDHYTYNIMIDIYGEQ----------GWINEVVGVLTELK 635 (711)
Q Consensus 571 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~ 635 (711)
.+...+..+...+...|++++|...++++.+.. .......+..+...+... |++++|...|+++.
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 567788888888999999999999998887531 011122244455666777 89999999999988
Q ss_pred HCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 636 ECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 636 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
+. .|+ ..++..+..+|...|++++|...++++.+ +.|+.
T Consensus 456 ~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~ 495 (537)
T 3fp2_A 456 EL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTM 495 (537)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--C
T ss_pred Hh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCc
Confidence 84 454 77888899999999999999999999887 55653
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.2e-22 Score=212.11 Aligned_cols=431 Identities=10% Similarity=0.027 Sum_probs=328.4
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHH
Q 005161 259 SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSC 338 (711)
Q Consensus 259 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 338 (711)
..+..++..+.+.|++++|...|++++..+|. +..++..+...|.+.|++++|++.++++...++. +...+..+...+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 44566788888999999999999999888776 7899999999999999999999999999887654 567788899999
Q ss_pred HccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcC
Q 005161 339 KDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSG------IRLDLIAFTVVVRMYVKAG 412 (711)
Q Consensus 339 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~ 412 (711)
...|++++|...|+.+ .. .|+.. ...+..+...+....+...++.+.... ..|+. ..+..+....
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~ 174 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIF 174 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhc
Confidence 9999999999999744 22 22211 112334445556678888888886641 12333 3344455666
Q ss_pred ChHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHH--------HcCCHHHHHHHHHHHHhcCCCCC------hhhHHHHHH
Q 005161 413 SLKDACAVLETMEKQKDIEPDAY-LYCDMLRIYQ--------QCGMLDKLSYLYYKILKSGITWN------QELYDCVIN 477 (711)
Q Consensus 413 ~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 477 (711)
+.+.+...+... ....+... ....+...+. ..|++++|..+++++.+...... ..++..+..
T Consensus 175 ~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 175 DSHLEVSSVNTS---SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGI 251 (537)
T ss_dssp CHHHHHHTSCCC---CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhc---cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHH
Confidence 666666555433 11223222 2222222221 23578999999999987653321 224666677
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHH
Q 005161 478 CCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESM 557 (711)
Q Consensus 478 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 557 (711)
.+...|++++|...++.+.+. .|+...+..+...+...|++++|...++.+.+..+.+..++..+...+...|++++|
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 888999999999999999986 455788888999999999999999999999999998999999999999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 005161 558 SSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKEC 637 (711)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (711)
...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999998874 5567889999999999999999999999999863 556778999999999999999999999999873
Q ss_pred C-----CCCChHhHHHHHHHHhcc----------CChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcchHHHHHHHH
Q 005161 638 G-----LRPDLCSYNTLIKAYGIA----------GMVEDAVGLVKEMRENGIEPD-KITYTNMITALQRNDKFLEAIKWS 701 (711)
Q Consensus 638 ~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~ 701 (711)
. .......+..+..++... |++++|+..++++.+ ..|+ ...+..+..+|.+.|++++|.+++
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 2 001122345556777777 999999999999998 5674 578899999999999999999999
Q ss_pred HHHHHhCc
Q 005161 702 LWMKQIGL 709 (711)
Q Consensus 702 ~~m~~~g~ 709 (711)
+++.+...
T Consensus 486 ~~al~~~~ 493 (537)
T 3fp2_A 486 EDSAILAR 493 (537)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhCC
Confidence 99887654
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=5.7e-20 Score=180.94 Aligned_cols=302 Identities=10% Similarity=0.008 Sum_probs=207.4
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
|...+..+...+...|++++|...|+.+++.. +.+...+..+..++...|++++|...|+++.+.+|....++..++.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45677888889999999999999999999875 55678888899999999999999999999999998888999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVV--PNLENWLVM------------LNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNT 159 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (711)
+...|++++|...++.+....+. .+...+..+ ...+...|++++|...++++.+.. +.+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 99999999999999999886541 134444444 467778888888888888888764 446777888
Q ss_pred HHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHH-----------
Q 005161 160 LMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLY----------- 228 (711)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------- 228 (711)
+...+...|++++|...|+++.+..+ .+..++..+...+...|++++|...|++..+.... +...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHH
Confidence 88888888888888888888877543 46677778888888888888888888888765322 222221
Q ss_pred -HHHHHHHcCCCHHHHHHHHHHHHHCCCCChh----HHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHH
Q 005161 229 -TLINLHAKYEDEEGAVNTLDDMLNMGCQHSS----ILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAY 303 (711)
Q Consensus 229 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (711)
.+...+...|++++|...++++.+..+.... .+..++..+...|++++|...++.++..++. +..++..+...+
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~ 316 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 1234455556666666666665555444331 1222344444444444444444444443322 333444444444
Q ss_pred HhcCCHHHHHHHHHhhh
Q 005161 304 VKHGLIDDAMKVLGDKR 320 (711)
Q Consensus 304 ~~~g~~~~a~~~~~~~~ 320 (711)
...|++++|...|++..
T Consensus 317 ~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444433
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=4.8e-17 Score=172.79 Aligned_cols=569 Identities=12% Similarity=0.091 Sum_probs=382.1
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCC--CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHH
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECDV--QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAM 90 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 90 (711)
.+..-....+++|...|.+.+|.+++++.+..+. ..+...-+.++.+..+. +.....++..+..... ...+
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eI 1055 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDI 1055 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHH
Confidence 3445556778889999999999999999984421 13445555566665555 5566666665554222 3347
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCh
Q 005161 91 ITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNM 170 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (711)
..++...|.+++|..+|++... .......++. ..+++++|.++.++. .++.+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 8888999999999999998521 2222233332 668899999988855 2577899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 005161 171 EAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDM 250 (711)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (711)
++|...|.+. .|...|..++..+.+.|++++|.+.|....+.. +++.....++.+|++.++++......
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 9999999663 477788889999999999999999999887754 33333345888889998888544332
Q ss_pred HHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhh
Q 005161 251 LNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNL 330 (711)
Q Consensus 251 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 330 (711)
.++. ...+..++..+...|++++|...|+.+ ..|..++..+.+.|++++|.+.+++.. +..+
T Consensus 1191 --~~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~a 1252 (1630)
T 1xi4_A 1191 --NGPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRT 1252 (1630)
T ss_pred --hCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHH
Confidence 2232 345557999999999999999999864 478999999999999999999998772 4568
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005161 331 YHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVK 410 (711)
Q Consensus 331 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (711)
|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|+-+...|++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 999999999999999998877653 3355567788999999999999999998887654 3345567667777766
Q ss_pred c--CChHHHHHHHHHHHhcCCCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------CCCCChhh
Q 005161 411 A--GSLKDACAVLETMEKQKDIEP------DAYLYCDMLRIYQQCGMLDKLSYLYYKILKS-----------GITWNQEL 471 (711)
Q Consensus 411 ~--~~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~ 471 (711)
. ++..++.+.|. ...+++| +...|..++..|.+.|+++.|....-+-... ....++..
T Consensus 1327 y~peklmEhlk~f~---~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~el 1403 (1630)
T 1xi4_A 1327 FKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVEL 1403 (1630)
T ss_pred CCHHHHHHHHHHHH---HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHH
Confidence 4 33444444444 3333444 5677999999999999999988432211100 11335666
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 472 YDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQN 551 (711)
Q Consensus 472 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 551 (711)
|...+.-|. +....++.-+...+...+.+ ...+..+.+.|++.-+...+..+... .+...-..+...|...
T Consensus 1404 yykai~Fyl--~~~P~~lndLl~~l~~rlD~-----~R~V~l~~~~~~l~lik~yl~~vq~~--n~~~Vneal~el~iee 1474 (1630)
T 1xi4_A 1404 YYRAIQFYL--EFKPLLLNDLLMVLSPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNH--NNKSVNESLNNLFITE 1474 (1630)
T ss_pred HHHHHHHHH--hhChHHHHHHHHHhhhcCCh-----HHHHHHHHHcCChHHhHHHHHHHHHh--cchhhhHHHHHHhcCc
Confidence 666666665 22233333333333222222 23344555666666666666555432 2333334444445555
Q ss_pred CCHHHHHH------------HHHHHHHCCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005161 552 KNLESMSS------------TVQEMQFDGFSVSLEAYNSMLD-AYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIY 618 (711)
Q Consensus 552 ~~~~~a~~------------~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (711)
++++.-.. +-.++.++ +..-+..+.. .|.+.|+|..|.+++++.. .|.-.|...
T Consensus 1475 ed~~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ly~~n~~~~~ai~l~k~d~---------l~~dAm~~a 1541 (1630)
T 1xi4_A 1475 EDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLFKGNNRWKQSVELCKKDS---------LYKDAMQYA 1541 (1630)
T ss_pred cchHHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHHHHHhcCcHHHHHHHHHhcc---------CHHHHHHHH
Confidence 55432221 11122211 1111233333 3445588888888887643 244567778
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHH
Q 005161 619 GEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGL 665 (711)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 665 (711)
.+.|+.+.+.+++.-..+. -+...|...+..|...=+++.++++
T Consensus 1542 ~~S~d~e~~e~ll~~F~~~---~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1542 SESKDTELAEELLQWFLQE---EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred HHcCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCCchHHHHH
Confidence 8889999888888887764 3456788888888888888877765
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=2e-16 Score=168.15 Aligned_cols=469 Identities=12% Similarity=0.070 Sum_probs=304.5
Q ss_pred HHHHHHHhcCChHHHHHHHHH------HhHcCCCCCHhhHHHHHHHHHccCCHHHHHHH-----------HHHHHHcCCC
Q 005161 20 TLIYACNKRGCVELGAKWFHM------MLECDVQPNVATFGMLMGLYKKSWNVEEAEFA-----------FNQMRKLGLV 82 (711)
Q Consensus 20 ~~l~~~~~~~~~~~a~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-----------~~~~~~~~~~ 82 (711)
.++..||...|+..|.-.|+. +++ +.-....|..+.+-+.+..+.+.-..+ .++.......
T Consensus 903 ~~vgkyce~rDp~la~iay~~g~~d~eli~--vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~ 980 (1630)
T 1xi4_A 903 RVVGKYCEKRDPHLACVAYERGQCDLELIN--VCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALS 980 (1630)
T ss_pred HHHHHHHHhcCcchHHHHhcccCCcHHHHH--HHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcc
Confidence 345779999999988877764 111 122334455555555555555543332 2332222221
Q ss_pred ---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005161 83 ---CESAYSAMITIYTRLSLYEKAEEVIRLIREDKV--VPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAY 157 (711)
Q Consensus 83 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 157 (711)
++.-....++.|...|.+.+|+++++++.-.+. .-+...-+.++.+..+. +..+..+...+..+. + .
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~ 1052 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---A 1052 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---H
Confidence 134456777888888999999999988874321 12334445566666555 455566655555432 1 3
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcC
Q 005161 158 NTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKY 237 (711)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (711)
..+...+...|.+++|..+|++... .....+.++. ..|++++|.+++++. -++.+|..+..++...
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhC
Confidence 3467777888888999888887532 2222233332 567888888888755 2466788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 005161 238 EDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLG 317 (711)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 317 (711)
|++++|...|.+. .....+..++..+.+.|++++|.+.+..+......+ ...+.++..|++.+++++......
T Consensus 1119 G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~--~Idt~LafaYAKl~rleele~fI~ 1191 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFIN 1191 (1630)
T ss_pred CCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc--cccHHHHHHHHhhcCHHHHHHHHh
Confidence 8888888888653 344667778888888888888888888777655332 233348888888888875444431
Q ss_pred hhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 005161 318 DKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLD 397 (711)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 397 (711)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +
T Consensus 1192 -------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n 1249 (1630)
T 1xi4_A 1192 -------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------S 1249 (1630)
T ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------C
Confidence 234445667888888888888888888874 378888888888888888888887662 5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 005161 398 LIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVIN 477 (711)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (711)
..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+... +-....|+-+..
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 678888888888888888888876654 2355566688888888888888888887776554 334445555555
Q ss_pred HHHcc--CCHHHHHHHHHHHHhCCCC------ccHHHHHHHHHHHhccCcHHHHHHHHHHHHH------------cCCCc
Q 005161 478 CCARA--LPIDELSRVFDEMLQHGFT------PNIITLNVMLDIYGKAKLFKRVRKLFSMAKK------------LGLVD 537 (711)
Q Consensus 478 ~~~~~--~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~~~~ 537 (711)
.+++. ++..++.+.|..-.. ++ .+...|..+...|.+.|+++.|....-.-.. ..+.+
T Consensus 1323 LyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n 1400 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN 1400 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhccccc
Confidence 55443 345555555543322 22 2466778888888888888888733211110 12346
Q ss_pred hhHHHHHHHHHHh
Q 005161 538 VISYNTIIAAYGQ 550 (711)
Q Consensus 538 ~~~~~~l~~~~~~ 550 (711)
+..|...+..|..
T Consensus 1401 ~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1401 VELYYRAIQFYLE 1413 (1630)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666663
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.6e-19 Score=177.65 Aligned_cols=334 Identities=16% Similarity=0.083 Sum_probs=232.7
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+...+..+...+...|++++|...|+.+.+.+|....++..++.++...|++++|...++++...++. +...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 45667788888999999999999999999999988899999999999999999999999998886644 66788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHH------------HHHhhccCChHHHHHHHHHHHhcCCCCChhhHHH
Q 005161 129 YSQQGKLEEAELVLVSMREAGFS--PNIVAYNTL------------MTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRS 194 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 194 (711)
+...|++++|...++++.+..+. .+...+..+ ...+...|++++|...|+++.+..+ .+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 99999999999999999886420 244445444 4566667777777777777666543 35566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCC
Q 005161 195 MIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRT 274 (711)
Q Consensus 195 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 274 (711)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+.....+..+....
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------ 232 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK------ 232 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH------
Confidence 6777777777777777777776652 234556666666677777777777777776666555443222111100
Q ss_pred CcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccH---hhHHHHHHHHHccCChhhHHHHH
Q 005161 275 DNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFED---NLYHLLICSCKDSGHLANAVKIY 351 (711)
Q Consensus 275 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~ 351 (711)
.......+...+.+.|++++|...+++.....+.... ..+..+...+...|++++|...+
T Consensus 233 -----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 233 -----------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp -----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 1111223355667777777777777776665443111 22445666777788888888888
Q ss_pred HHHhhcCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005161 352 SHMHICDGKPNLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVK 410 (711)
Q Consensus 352 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (711)
+...+.. +.+..++..+...+...|++++|...|+.+.+.. +.+...+..+..+...
T Consensus 296 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 296 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 8777653 4466777888888888888888888888888763 2245555555555443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.4e-19 Score=175.70 Aligned_cols=289 Identities=12% Similarity=0.067 Sum_probs=201.8
Q ss_pred CCCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHH
Q 005161 10 GAKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSA 89 (711)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 89 (711)
+.+.+..++......+...|++++|.++|+.+++.. +.+...+..++.++...|++++|...++++.+.+|....+|..
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA 95 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 445566777777778888888888888888887765 4455666667777778888888888888888887777778888
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 005161 90 MITIYTRLS-LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVS 168 (711)
Q Consensus 90 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (711)
+...+...| ++++|...|+++...++. +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 888888888 788888888887776544 45667777888888888888888888887764 334566666777788888
Q ss_pred ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------CccHhhHHHHHHHHHcCCCH
Q 005161 169 NMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGY--------KPNASNLYTLINLHAKYEDE 240 (711)
Q Consensus 169 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~ 240 (711)
++++|...|++..+..+ .+...+..+...+...|++++|...++++.+... .....++..+..++...|++
T Consensus 174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 88888888888776543 4566777777888888888888888877765410 22244666677777777777
Q ss_pred HHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHH
Q 005161 241 EGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAY 303 (711)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (711)
++|...++++.+..+.....+..++..+...|++++|...+++++...+. +..++..+...+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 77777777777666555555555555555555555555555555554443 444444444444
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=3.7e-18 Score=176.64 Aligned_cols=416 Identities=12% Similarity=0.076 Sum_probs=211.4
Q ss_pred HHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005161 39 HMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPN 118 (711)
Q Consensus 39 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 118 (711)
+..++.. +-+...|..++.. .+.|+++.|..+|+++.+..|.+...|..++..+.+.|++++|..+|++++... |+
T Consensus 3 e~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~ 78 (530)
T 2ooe_A 3 EKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LH 78 (530)
T ss_dssp HHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CC
T ss_pred hhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC
Confidence 4444443 3456666666663 556677777777777777666666667777777777777777777777666544 45
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHc-CCC-CCHHHHHHHHHHhhc---------cCChHHHHHHHHHHHh
Q 005161 119 LENWLVMLNAY-SQQGKLEEAEL----VLVSMREA-GFS-PNIVAYNTLMTGYGK---------VSNMEAAQRLFLSIKD 182 (711)
Q Consensus 119 ~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 182 (711)
...|...+... ...|+.+.|.+ +|+..+.. |.. ++...|...+....+ .|+++.|..+|++..+
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 55555554322 23455555443 55554432 322 244555555554432 5667777777777666
Q ss_pred cCCCCCh---hhHHHHHHHH-------------HhcCCHHHHHHHHHHHH------hcC---CCcc--------HhhHHH
Q 005161 183 VGLEPDE---TTYRSMIEGW-------------GRAGNYREAKWYYKELK------HLG---YKPN--------ASNLYT 229 (711)
Q Consensus 183 ~~~~~~~---~~~~~li~~~-------------~~~g~~~~A~~~~~~~~------~~~---~~~~--------~~~~~~ 229 (711)
. |+. ..|....... .+.+++..|..++.+.. +.. +.|+ ...|..
T Consensus 159 ~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 159 N---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp S---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred c---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 2 221 2222211100 12234455555544421 110 1221 112222
Q ss_pred HHHHHHcC----CCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHh
Q 005161 230 LINLHAKY----EDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVK 305 (711)
Q Consensus 230 l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (711)
.+...... ++... ..+.+..++++++...|. +...|..++..+.+
T Consensus 236 ~~~~e~~~~~~~~~~~~------------------------------~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~ 284 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTL------------------------------ITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQ 284 (530)
T ss_dssp HHHHHHHCSSCCSCSHH------------------------------HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccCCcchh------------------------------HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 22111110 11100 001233444444444333 44555555555443
Q ss_pred -------cCCHH-------HHHHHHHhhhh-cCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCc--HHHHHH
Q 005161 306 -------HGLID-------DAMKVLGDKRW-KDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPN--LHIMCT 368 (711)
Q Consensus 306 -------~g~~~-------~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 368 (711)
.|+++ +|..+|++... ..+ -+...|..++..+.+.|++++|..+|+++++. .|+ ...|..
T Consensus 285 ~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p-~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 361 (530)
T 2ooe_A 285 SSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQ 361 (530)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHH
T ss_pred hchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHH
Confidence 45544 55555555543 221 13444555555555566666666666665553 222 235666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHc
Q 005161 369 MIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRM-YVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQC 447 (711)
Q Consensus 369 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (711)
.+..+.+.|++++|.++|+...+.. +.+...+...... +...|+.++|..+|+...+.. +.+...|..++..+.+.
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~ 438 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHL 438 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhC
Confidence 6666666666666666666666542 1122233222211 224666777777776665443 23455666666666666
Q ss_pred CCHHHHHHHHHHHHhcCC-CC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 005161 448 GMLDKLSYLYYKILKSGI-TW--NQELYDCVINCCARALPIDELSRVFDEMLQH 498 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 498 (711)
|+.+.|..+|++....+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 439 g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 439 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp TCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777666532 22 1235556666666667777777777766653
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=5.2e-19 Score=171.68 Aligned_cols=271 Identities=11% Similarity=0.016 Sum_probs=205.2
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005161 46 VQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVM 125 (711)
Q Consensus 46 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (711)
.+.+...+..+...+...|++++|..+|+.+.+.+|....++..++.++...|++++|...++++....+. +..++..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 35667778888888899999999999999999999988888888999999999999999999999886654 66788888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 005161 126 LNAYSQQG-KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGN 204 (711)
Q Consensus 126 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 204 (711)
...+...| ++++|...++++.+.. +.+...|..+...+...|++++|...|++..+... .+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 89999999 9999999999999875 34677888999999999999999999999887653 345667778888999999
Q ss_pred HHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC---------CChhHHHHHHHHHHhcCCCC
Q 005161 205 YREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGC---------QHSSILGTLLQAYEKAGRTD 275 (711)
Q Consensus 205 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~ 275 (711)
+++|...|+++.+.. +.+..++..+...+...|++++|...++++.+..+ .....+..++..+...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999998864 33567788888888899999999998888876532 11234445555555555555
Q ss_pred cHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 005161 276 NVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRW 321 (711)
Q Consensus 276 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 321 (711)
+|...++.++...+. +..++..+...+...|++++|.+.|++...
T Consensus 254 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 555555555544433 444445555555555555555555554443
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=7.9e-17 Score=166.70 Aligned_cols=428 Identities=9% Similarity=-0.000 Sum_probs=252.8
Q ss_pred HHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCc
Q 005161 247 LDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVF 326 (711)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 326 (711)
+++.++..|.....+..++. +.+.|+++.|..++++++...|. +...|..++..+.+.|++++|..+|++..... |
T Consensus 2 le~al~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p 77 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L 77 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C
T ss_pred hhhHhhhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C
Confidence 45555555655566666665 35566666777777766666555 56666666666666667777777666666554 2
Q ss_pred cHhhHHHHHHHH-HccCChhhHHH----HHHHHhhc-CCC-CcHHHHHHHHHHHHc---------cCCHHHHHHHHHHHH
Q 005161 327 EDNLYHLLICSC-KDSGHLANAVK----IYSHMHIC-DGK-PNLHIMCTMIDTYSV---------MGMFTEAEKLYLNLK 390 (711)
Q Consensus 327 ~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 390 (711)
+...|...+... ...|+.+.|.+ +|+..+.. |.. ++...|...+..... .|+++.|..+|+...
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 444455444322 23455555544 44444322 222 233445554444333 455666666666655
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------HhcC
Q 005161 391 SSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKI------LKSG 464 (711)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~ 464 (711)
+.........|..........+. ..+..++. ...+++..|..++... .+..
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~----------------------~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLAKKMIE----------------------DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH----------------------TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHHHHHHH----------------------HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 52100001222222111100110 00000000 0123344555544442 1111
Q ss_pred ---CCCC--------hhhHHHHHHHHHcc----CCH----HHHHHHHHHHHhCCCCccHHHHHHHHHHHhc-------cC
Q 005161 465 ---ITWN--------QELYDCVINCCARA----LPI----DELSRVFDEMLQHGFTPNIITLNVMLDIYGK-------AK 518 (711)
Q Consensus 465 ---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~ 518 (711)
++|+ ...|...+...... ++. ..+..+|++.+... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 1222 12344333322211 222 36677888877642 4466677777776664 67
Q ss_pred cHH-------HHHHHHHHHHH-cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-h-hhHHHHHHHHHhcCC
Q 005161 519 LFK-------RVRKLFSMAKK-LGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVS-L-EAYNSMLDAYGKEGQ 588 (711)
Q Consensus 519 ~~~-------~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~ 588 (711)
+++ +|..++++..+ ..|.+...|..++..+.+.|++++|..+|+++.+. +|+ . ..|..++..+.+.|+
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcC
Confidence 776 88888888886 56667888888888888889999999999988875 343 2 477888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHH
Q 005161 589 MENFKNVLRRMKETSCTFDHYTYNIMIDI-YGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLV 666 (711)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 666 (711)
+++|..+|++..+.. +.+...|...+.. +...|+.++|..+|++.++. .|+ +..|..++..+.+.|+.++|..+|
T Consensus 372 ~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 372 IKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 999999998888642 2223333222222 33578899999999988874 454 778888888888889999999999
Q ss_pred HHHHHcC-CCCC--cchHHHHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 667 KEMRENG-IEPD--KITYTNMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 667 ~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
++....+ ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9988742 2332 236777777777788888888888887654
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=6.7e-16 Score=157.96 Aligned_cols=352 Identities=13% Similarity=0.013 Sum_probs=252.2
Q ss_pred chhHHHHHHHHHHh----cCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHc----cCChhhHHHHHHHHhhcCCCCcH
Q 005161 292 NLTSCSILVMAYVK----HGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKD----SGHLANAVKIYSHMHICDGKPNL 363 (711)
Q Consensus 292 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 363 (711)
+..+...+...|.. .+++++|+..|++..+.+ +...+..+...|.. .++.++|...|++..+.+ +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55566666666666 677777777777766553 33456666666666 677777777777776654 44
Q ss_pred HHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCcHH
Q 005161 364 HIMCTMIDTYSV----MGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVK----AGSLKDACAVLETMEKQKDIEPDAY 435 (711)
Q Consensus 364 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 435 (711)
..+..+...|.. .+++++|...|+...+.| +...+..+...|.. .++.++|.+.|+...+. .+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~ 184 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GNVW 184 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHH
Confidence 555566666666 677888888888777764 55666677777776 67788888888777543 3566
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCccHHHH
Q 005161 436 LYCDMLRIYQQ----CGMLDKLSYLYYKILKSGITWNQELYDCVINCCAR----ALPIDELSRVFDEMLQHGFTPNIITL 507 (711)
Q Consensus 436 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 507 (711)
.+..+...|.. .++.++|..+|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 67777777776 778888888888877765 45566666666664 678888888888887764 33445
Q ss_pred HHHHHHHhc----cCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHH
Q 005161 508 NVMLDIYGK----AKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQN-----KNLESMSSTVQEMQFDGFSVSLEAYNS 578 (711)
Q Consensus 508 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 578 (711)
..+...|.. .++.++|...|+...+.+ ++..+..+...|... +++++|+..+++..+.| +...+..
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG--NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 555556655 788888888888877654 455667777777776 78888888888888765 3456666
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 005161 579 MLDAYGKEG---QMENFKNVLRRMKETSCTFDHYTYNIMIDIYGE----QGWINEVVGVLTELKECGLRPDLCSYNTLIK 651 (711)
Q Consensus 579 l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 651 (711)
+...|...| ++++|.+.+++..+.+ ++..+..+...|.. .+++++|...|++..+.| ++..+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777776655 7788888888888753 56777788888877 788888888888888754 4667788888
Q ss_pred HHhc----cCChHHHHHHHHHHHHcC
Q 005161 652 AYGI----AGMVEDAVGLVKEMRENG 673 (711)
Q Consensus 652 ~~~~----~g~~~~A~~~~~~~~~~~ 673 (711)
.|.. .+++++|...|++..+.+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8887 788888988888888754
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=6.9e-16 Score=157.86 Aligned_cols=363 Identities=11% Similarity=0.009 Sum_probs=207.7
Q ss_pred HHHHHHHHhHcCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh----cCCHHHHHH
Q 005161 34 GAKWFHMMLECDVQPNVATFGMLMGLYKK----SWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR----LSLYEKAEE 105 (711)
Q Consensus 34 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 105 (711)
+.+.+....+.| +...+..+...|.. .++++.|...|++..+.+ +..++..+...|.. .+++++|.+
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 345555555543 66677777777776 778888888888877753 35677777788877 788888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCChHHHHHHH
Q 005161 106 VIRLIREDKVVPNLENWLVMLNAYSQ----QGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK----VSNMEAAQRLF 177 (711)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 177 (711)
.|++..+.+ +..++..+...|.. .+++++|...|++..+.+ ++..+..|...|.. .+++++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 888877654 45566667777776 677888888888877754 56666777776665 67778888888
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHc----CCCHHHHHHHHHH
Q 005161 178 LSIKDVGLEPDETTYRSMIEGWGR----AGNYREAKWYYKELKHLGYKPNASNLYTLINLHAK----YEDEEGAVNTLDD 249 (711)
Q Consensus 178 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 249 (711)
++..+.+ +...+..+...|.. .+++++|...|++..+.| +...+..+...+.. .++.++|...+++
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~ 248 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ 248 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 7777643 56666667777766 677777777777776654 34455555555553 5566666666666
Q ss_pred HHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHh----cCCHHHHHHHHHhhhhcCCC
Q 005161 250 MLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVK----HGLIDDAMKVLGDKRWKDTV 325 (711)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 325 (711)
..+.+ +..++..+...|.. .++.++|+.+|++..+.+
T Consensus 249 a~~~~-------------------------------------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-- 289 (490)
T 2xm6_A 249 SAEQG-------------------------------------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-- 289 (490)
T ss_dssp HHTTT-------------------------------------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--
T ss_pred HHHCC-------------------------------------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--
Confidence 55432 23333444444444 455555555555544332
Q ss_pred ccHhhHHHHHHHHHcc-----CChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCC
Q 005161 326 FEDNLYHLLICSCKDS-----GHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMG---MFTEAEKLYLNLKSSGIRLD 397 (711)
Q Consensus 326 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~ 397 (711)
+...+..+...+... +++++|...|++..+.+ +...+..+...+...| ++++|.+.|+...+.+ +
T Consensus 290 -~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~ 362 (490)
T 2xm6_A 290 -NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---E 362 (490)
T ss_dssp -CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---C
T ss_pred -CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---C
Confidence 122333333333333 44555555555444432 2233333333343333 4455555555554432 3
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 005161 398 LIAFTVVVRMYVK----AGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQ----CGMLDKLSYLYYKILKS 463 (711)
Q Consensus 398 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 463 (711)
...+..+...|.. .+++++|...|+...+. .+...+..+...|.. .++.++|...|++..+.
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4444444444544 44555555555544321 123334444444443 34444444444444443
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=8.3e-19 Score=173.13 Aligned_cols=257 Identities=11% Similarity=-0.045 Sum_probs=137.3
Q ss_pred hcCChHHHHH-HHHHHhHcCCC-C--CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHH
Q 005161 27 KRGCVELGAK-WFHMMLECDVQ-P--NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEK 102 (711)
Q Consensus 27 ~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 102 (711)
-.|+++.|.. .|+..++.... | +...+..+...+.+.|++++|...|+++.+.+|....++..++.+|...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 4456666666 66655543211 1 234566666777777777777777777777777666777777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH---------------HHHhhcc
Q 005161 103 AEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTL---------------MTGYGKV 167 (711)
Q Consensus 103 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------------~~~~~~~ 167 (711)
|+..|+++...++. +..++..+...+...|++++|...++++.+..+. +...+..+ +..+...
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 77777777665543 5566667777777777777777777777765322 22222111 1122245
Q ss_pred CChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHH
Q 005161 168 SNMEAAQRLFLSIKDVGLEP-DETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNT 246 (711)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 246 (711)
|++++|...|+++.+..+.. +..++..+...+...|++++|...|+++.... +.+..++..+...+...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555433211 24445555555555555555555555555432 11344455555555555555555555
Q ss_pred HHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhh
Q 005161 247 LDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLY 286 (711)
Q Consensus 247 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 286 (711)
++++.+..+.....+..++..+.+.|++++|...++.++.
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555554444444444444444444444444444444433
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=5.6e-18 Score=166.79 Aligned_cols=267 Identities=10% Similarity=-0.078 Sum_probs=207.7
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+...+..+...+.+.|++++|...|+++.+.+|....+|..++.+|...|++++|+..|+++...++. +..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 44557888888999999999999999999999888889999999999999999999999998886644 67788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH----------HHHHHHHHHhhccCChHHHHHHHHHHHhcCCC-CChhhHHHHHH
Q 005161 129 YSQQGKLEEAELVLVSMREAGFSPNI----------VAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLE-PDETTYRSMIE 197 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~ 197 (711)
|...|++++|...++++.+..+ .+. ..+..+...+.+.|++++|...|+++.+..+. ++..++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999887631 112 22334577888889999999999998876532 15778888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcH
Q 005161 198 GWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNV 277 (711)
Q Consensus 198 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 277 (711)
.+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++++..|.....+..++..+...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999988763 335778888888999999999999999999888887778888888888888888888
Q ss_pred HHHHHHhhhccCCc-----------chhHHHHHHHHHHhcCCHHHHHHHHHh
Q 005161 278 PRILKGSLYQHVLF-----------NLTSCSILVMAYVKHGLIDDAMKVLGD 318 (711)
Q Consensus 278 ~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 318 (711)
...+++++...+.. +..+|..+...+...|+.+.+.++..+
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 88888877654331 245677777777777777766665544
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=1e-17 Score=165.25 Aligned_cols=265 Identities=15% Similarity=0.042 Sum_probs=218.9
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
+...+..+...+.+.|++++|...|+.+++.. +.+...+..+..++.+.|++++|...|+++.+.+|....++..++.+
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 141 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 141 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35668888899999999999999999999975 56788899999999999999999999999999999889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNLENWLV---------------MLNAYSQQGKLEEAELVLVSMREAGFSP-NIVAY 157 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 157 (711)
|...|++++|.+.++++....+. +...+.. .+..+...|++++|...++++.+..+.. +..++
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 99999999999999999886644 2222211 2334448899999999999999875322 57889
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcC
Q 005161 158 NTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKY 237 (711)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (711)
..+...+.+.|++++|...|+++.+..+ .+..+|..+...+...|++++|...|+++.+.. +.+..++..+..++...
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 9999999999999999999999987643 457889999999999999999999999998863 33577889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-----------hhHHHHHHHHHHhcCCCCcHHHHHH
Q 005161 238 EDEEGAVNTLDDMLNMGCQH-----------SSILGTLLQAYEKAGRTDNVPRILK 282 (711)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~ 282 (711)
|++++|...++++.+..+.. ...+..++..+...|++++|..+++
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 99999999999998876554 3445555555555555555555444
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=6.2e-18 Score=166.48 Aligned_cols=266 Identities=13% Similarity=0.006 Sum_probs=224.3
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
+...+..+...+.+.|++++|...|+.+++.. +.+...+..+..+|...|++++|...|+++.+.+|....+|..++.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45568888999999999999999999999976 56788999999999999999999999999999999889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNL----------ENWLVMLNAYSQQGKLEEAELVLVSMREAGFSP-NIVAYNTLMT 162 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 162 (711)
|...|++++|+..++++....+. +. ..+..+...+.+.|++++|...++++.+..+.. +..++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999999875422 11 223345788889999999999999999875321 6889999999
Q ss_pred HhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHH
Q 005161 163 GYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEG 242 (711)
Q Consensus 163 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (711)
.+...|++++|...|++..+..+ .+..+|..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999988653 467889999999999999999999999998863 2357789999999999999999
Q ss_pred HHHHHHHHHHCCCC------------ChhHHHHHHHHHHhcCCCCcHHHHHHH
Q 005161 243 AVNTLDDMLNMGCQ------------HSSILGTLLQAYEKAGRTDNVPRILKG 283 (711)
Q Consensus 243 a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 283 (711)
|...++++.+..+. ...++..+...+...|+.+.+..+.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999887654 246788899999999999888887765
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=2.2e-17 Score=159.91 Aligned_cols=279 Identities=13% Similarity=0.002 Sum_probs=146.2
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...+......+...|++++|..+|+.+++.. +.+...+..+..++...|++++|...|+++.+.+|....++..++.+|
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 3344455555666666666666666666543 334555555556666666666666666666666555555666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HhhccCChHH
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTL-MT-GYGKVSNMEA 172 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~ 172 (711)
...|++++|...++++....+. +...+..+...+ |+......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 6666666666666665554322 111221210000 000000011 11 2445555555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005161 173 AQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLN 252 (711)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (711)
|...++++.+..+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555554332 244455555555555556666655555555442 12344555555555555555555555555555
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCc-----------chhHHHHHHHHHHhcCCHHHHHHHHHhh
Q 005161 253 MGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLF-----------NLTSCSILVMAYVKHGLIDDAMKVLGDK 319 (711)
Q Consensus 253 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 319 (711)
..+.....+..++..+...|++++|...++.++...+.. +..+|..+...+.+.|++++|..++++.
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 554444455555555555555555555555554443332 4566777777777777777777776543
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=2.6e-17 Score=156.46 Aligned_cols=283 Identities=13% Similarity=0.127 Sum_probs=97.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELV 141 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 141 (711)
+.|++++|.+.++++.. +.+|..++.++.+.|++++|++.|.+. ++..+|..++.++...|++++|...
T Consensus 15 ~~~~ld~A~~fae~~~~-----~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE-----PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC-----hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 55667777777776622 236777777777777777777777542 3445666677777777777777776
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 005161 142 LVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYK 221 (711)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 221 (711)
++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 6655553 3445666677777777777777666663 255556777777777777777777777654
Q ss_pred ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHH
Q 005161 222 PNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVM 301 (711)
Q Consensus 222 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 301 (711)
..|..++.++.+.|++++|.+.+.++. ++.+|..++.
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA~----------------------------------------~~~~Wk~v~~ 185 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKAN----------------------------------------STRTWKEVCF 185 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHHT----------------------------------------CHHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHcC----------------------------------------CchhHHHHHH
Confidence 245566666666666666555555441 4556666666
Q ss_pred HHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHcc--CCH
Q 005161 302 AYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVM--GMF 379 (711)
Q Consensus 302 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~ 379 (711)
+|...|+++.|......+. ..+.-...++..|.+.|.+++|+.+++..+... +.....|+-+.-.+++- ++.
T Consensus 186 aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~ 259 (449)
T 1b89_A 186 ACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKM 259 (449)
T ss_dssp HHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHH
Confidence 6666666666644333211 222233446666666666666666666665443 34455555555444433 233
Q ss_pred HHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHHcCChHHHHHHH
Q 005161 380 TEAEKLYLNLKSSGIRL------DLIAFTVVVRMYVKAGSLKDACAVL 421 (711)
Q Consensus 380 ~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~ 421 (711)
.+.++.|..- .+++| +...|..+...|.+.++++.|...+
T Consensus 260 ~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 260 REHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 3333333211 12222 3556777888888888888777644
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=2.2e-17 Score=159.99 Aligned_cols=231 Identities=11% Similarity=-0.022 Sum_probs=158.9
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHH--
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAM-- 90 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-- 90 (711)
.+..++..+...+...|++++|...|+.+++.. +.+..++..+..++...|++++|...|+++.+..+.....+..+
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 131 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ 131 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH
Confidence 367788888899999999999999999999875 56788889999999999999999999999999988776666555
Q ss_pred ------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005161 91 ------------IT-IYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAY 157 (711)
Q Consensus 91 ------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 157 (711)
.. ++...|++++|...++++....+. +..++..+...+...|++++|...++++.+.. +.+...+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 209 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLW 209 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHH
Confidence 33 466667777777777777665443 55666677777777777777777777776653 3355666
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----------cHhh
Q 005161 158 NTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP-----------NASN 226 (711)
Q Consensus 158 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~ 226 (711)
..+...+...|++++|...|+++.+..+ .+..++..+...+...|++++|...|+++.+..... +..+
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 6677777777777777777777665432 345566666666666777777777776665542221 2334
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 005161 227 LYTLINLHAKYEDEEGAVNTL 247 (711)
Q Consensus 227 ~~~l~~~~~~~~~~~~a~~~~ 247 (711)
+..+..++...|+.+.|..++
T Consensus 289 ~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 289 WDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHH
Confidence 444445555555555444443
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=2.8e-17 Score=156.27 Aligned_cols=281 Identities=13% Similarity=0.117 Sum_probs=125.6
Q ss_pred hcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 005161 27 KRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEV 106 (711)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 106 (711)
+.|+.++|.++++++ +++.+|..|..++.+.|++++|.+.|.+. .+..+|..++..+...|++++|+..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 567899999999998 23359999999999999999999999764 2345899999999999999999998
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCC
Q 005161 107 IRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLE 186 (711)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 186 (711)
++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 8877664 3456778899999999999999887774 367779999999999999999999999976
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHH
Q 005161 187 PDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQ 266 (711)
Q Consensus 187 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 266 (711)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+ .-...++.
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a-d~l~~lv~ 215 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA-DELEELIN 215 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH-HHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH-hhHHHHHH
Confidence 46999999999999999999999998 278899999999999999999966555422 222 23446888
Q ss_pred HHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhc--CCHHHHHHHHHhhhhcCCCc------cHhhHHHHHHHH
Q 005161 267 AYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKH--GLIDDAMKVLGDKRWKDTVF------EDNLYHLLICSC 338 (711)
Q Consensus 267 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~ 338 (711)
.|.+.|++++|..+++..+..+.. ....|+-+...|++- +++.+.++.|..- -++.| +...|.-++-.|
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le~a-h~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLERA-HMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSTTC-CHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988877633 677888887777754 3344455544422 12211 234566666666
Q ss_pred HccCChhhHHH
Q 005161 339 KDSGHLANAVK 349 (711)
Q Consensus 339 ~~~~~~~~a~~ 349 (711)
...++++.|..
T Consensus 293 ~~~~e~d~A~~ 303 (449)
T 1b89_A 293 DKYEEYDNAII 303 (449)
T ss_dssp HHTTCHHHHHH
T ss_pred HhhchHHHHHH
Confidence 66666666655
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=5.2e-16 Score=158.73 Aligned_cols=384 Identities=9% Similarity=-0.054 Sum_probs=221.4
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc---------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKL---------GLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED----- 113 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 113 (711)
.....|+.|..++...|++++|++.|++..+. .+....+|+.+..+|...|++++|...++++...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34566788888888889999998888887653 3333567888888899999999998888876542
Q ss_pred C-CCC-CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---hhccCChHHHHHHHHHHHhcCCC
Q 005161 114 K-VVP-NLENWLVMLNAYSQ--QGKLEEAELVLVSMREAGFSPNIVAYNTLMTG---YGKVSNMEAAQRLFLSIKDVGLE 186 (711)
Q Consensus 114 ~-~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 186 (711)
+ ..+ ...++.....++.. .+++++|...|++..+.. |.++..+..+..+ +...++.++|.+.|++..+..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 111 23455555444444 356888999888888864 2355555555544 3445777888888888776543
Q ss_pred CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHH
Q 005161 187 PDETTYRSMIEGWGR----AGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILG 262 (711)
Q Consensus 187 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 262 (711)
.+..++..+...+.. .|++++|...+++..... +.+..++..+...+...|+++.|...++++.+..|....++.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 344555555444433 466778888888887763 235667777888888888888888888888888887777777
Q ss_pred HHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccC
Q 005161 263 TLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSG 342 (711)
Q Consensus 263 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 342 (711)
.++..|...+....+. ............+..+.|...+++....++. +...+..+...+...|
T Consensus 286 ~lg~~y~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNL----------------RENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhH----------------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhc
Confidence 6666654321100000 0000001111122345666666665554433 3345666667777777
Q ss_pred ChhhHHHHHHHHhhcCCCCcHH--HHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005161 343 HLANAVKIYSHMHICDGKPNLH--IMCTMID-TYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACA 419 (711)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 419 (711)
++++|+..|++.++....+... .+..+.. .....|++++|+..|.+..+. .|+....... ...+..
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHH
Confidence 7777777777766554332221 1222221 234567777777777777764 2333222111 223334
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 005161 420 VLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSG 464 (711)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 464 (711)
+++...... +.+..+|..+..+|...|++++|.+.|++.++.+
T Consensus 418 ~~~~~l~~~--p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 418 IAKMRLSKN--GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHC--C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 444443332 4456677777777778888888888887777654
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=1.7e-16 Score=148.82 Aligned_cols=257 Identities=13% Similarity=0.045 Sum_probs=183.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (711)
++.....|++..|+..++........+.......+.++|...|+++.|+..++. .+++...++..++..+...++.+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 456677888888888887765543111123445567788888888888876654 23334567777888888888888
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHH
Q 005161 102 KAEEVIRLIREDKVVP-NLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSI 180 (711)
Q Consensus 102 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 180 (711)
+|++.++++...+..| +...+..+...+.+.|++++|.+.+++ +.+...+..++..+.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888887665333 455666677788888888888888876 457778888888888888888888888888
Q ss_pred HhcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 005161 181 KDVGLEPDETTY---RSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQH 257 (711)
Q Consensus 181 ~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 257 (711)
.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...++++++..|..
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 7754 443211 11223333457888888888888876 34467777788888888888888888888888888777
Q ss_pred hhHHHHHHHHHHhcCCCCc-HHHHHHHhhhccCC
Q 005161 258 SSILGTLLQAYEKAGRTDN-VPRILKGSLYQHVL 290 (711)
Q Consensus 258 ~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~ 290 (711)
..++..++..+...|+.++ +.+.++++...+|.
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 7777777777777777765 45777777766555
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=1.1e-16 Score=150.20 Aligned_cols=253 Identities=11% Similarity=0.009 Sum_probs=189.9
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 005161 59 LYKKSWNVEEAEFAFNQMRKLGLVC-ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEE 137 (711)
Q Consensus 59 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 137 (711)
-....|+++.|+..++.+...+|.+ ......+.++|...|+++.|+..++. ...|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3446799999999988776666554 34667788999999999999886654 233566778888888888999999
Q ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 138 AELVLVSMREAGF-SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELK 216 (711)
Q Consensus 138 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 216 (711)
|.+.++++...+. +.+...+..+..++...|++++|.+.|++ ..+...+..++..+.+.|++++|...|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999888764 34666777777888999999999999987 3677788888999999999999999999998
Q ss_pred hcCCCccHhhH---HHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcch
Q 005161 217 HLGYKPNASNL---YTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNL 293 (711)
Q Consensus 217 ~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 293 (711)
+.. |+.... ...+..+...|++++|..+|+++.+..|.....+..++..+.+.|++++|...+++++..+|. +.
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~ 234 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HP 234 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Confidence 864 443211 123344445688888888888888887776677777777777777777777777777777665 66
Q ss_pred hHHHHHHHHHHhcCCHHH-HHHHHHhhhhcCC
Q 005161 294 TSCSILVMAYVKHGLIDD-AMKVLGDKRWKDT 324 (711)
Q Consensus 294 ~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~ 324 (711)
.++..++..+...|+.++ +.++++++...++
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 677777777777777654 4566666655543
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.4e-15 Score=153.82 Aligned_cols=202 Identities=12% Similarity=0.032 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHhhccCChHHHHHHHHHHHhc--------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----
Q 005161 153 NIVAYNTLMTGYGKVSNMEAAQRLFLSIKDV--------GLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLG----- 219 (711)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----- 219 (711)
....||.|..++...|++++|++.|++..+. .-.....+|+.+...|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3445666666666666666666666654321 011234456667777777777777777776665421
Q ss_pred -CCc-cHhhHHHHHHHHHc--CCCHHHHHHHHHHHHHCCCCChhHHHHHHHH---HHhcCCCCcHHHHHHHhhhccCCcc
Q 005161 220 -YKP-NASNLYTLINLHAK--YEDEEGAVNTLDDMLNMGCQHSSILGTLLQA---YEKAGRTDNVPRILKGSLYQHVLFN 292 (711)
Q Consensus 220 -~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 292 (711)
..+ ...++.....++.. .+++++|...|+++++..|........+... +...++.++|.+.+++++..++. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence 111 23344444433333 3467788888888887777766555555444 34456777888888877776655 5
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhh
Q 005161 293 LTSCSILVMAYVK----HGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHI 356 (711)
Q Consensus 293 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 356 (711)
..++..+...+.. .|++++|.+.+++....++. +...+..+...+...|++++|+..+++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 5555555444433 33455555555554443332 233344444455555555555555555444
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=1e-15 Score=137.04 Aligned_cols=199 Identities=14% Similarity=-0.024 Sum_probs=123.7
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHH
Q 005161 12 KLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMI 91 (711)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 91 (711)
+++...+..+...+.+.|++++|...|+.+++.. +.+...+..+..++.+.|++++|...|+++.+.+|....++..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3455666677777777777777777777777654 455666677777777777777777777777777777777777777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005161 92 TIYTRL-----------SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTL 160 (711)
Q Consensus 92 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (711)
.++... |++++|+..+++..+.++. +..++..+...+...|++++|...+++.++.. .++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 6777777777666665443 45566666666666677777776666666665 466666666
Q ss_pred HHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 161 MTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKEL 215 (711)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 215 (711)
..++...|++++|...|++..+..+ .+...+..+...+...|++++|...|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666665432 34455566666666666666666666544
No 36
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.69 E-value=2.1e-12 Score=133.56 Aligned_cols=290 Identities=10% Similarity=0.063 Sum_probs=192.5
Q ss_pred ChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC---HHHHHHH
Q 005161 30 CVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSL---YEKAEEV 106 (711)
Q Consensus 30 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 106 (711)
...+-...|+..+..+ +-|...|..++..+.+.+.++.+..+|+++....|.....|...+..-.+.++ ++.+.++
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 3455666778888776 67999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHhhc--------
Q 005161 107 IRLIREDKV-VPNLENWLVMLNAYSQQGKL--------EEAELVLVSMRE-AGF-SP-NIVAYNTLMTGYGK-------- 166 (711)
Q Consensus 107 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~-------- 166 (711)
|++.+...+ .|+...|...+....+.++. +.+.++|+..+. .|. .+ +...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999887652 36777887777665555543 334577877664 355 44 45788877765432
Q ss_pred -cCChHHHHHHHHHHHhcCCCCChhhHH---HHHHHHH----------hcCCHHHHHHHHHHHHhc--CCC---------
Q 005161 167 -VSNMEAAQRLFLSIKDVGLEPDETTYR---SMIEGWG----------RAGNYREAKWYYKELKHL--GYK--------- 221 (711)
Q Consensus 167 -~~~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~----------~~g~~~~A~~~~~~~~~~--~~~--------- 221 (711)
.++++.+..+|++........-..+|. .....+. ....+..|...+.++... ++.
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 345788999999988632111122332 2211110 012334455555543321 110
Q ss_pred ------c-----c---HhhHHHHHHHHHcCC-------CHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHH-H
Q 005161 222 ------P-----N---ASNLYTLINLHAKYE-------DEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVP-R 279 (711)
Q Consensus 222 ------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~ 279 (711)
| + ...|...+..-...+ ..+.+..+|++.+...+....++...+..+...|+.++|. .
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 1 0 123444444333222 1234566788887777777777778888887888888886 8
Q ss_pred HHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 005161 280 ILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRW 321 (711)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 321 (711)
+++.++...|. +...|...+...-+.|++++|.++|+++..
T Consensus 366 il~rAi~~~P~-s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 366 YLKLGQQCIPN-SAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88887765543 566677777777778888888888777654
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=3.2e-15 Score=133.88 Aligned_cols=199 Identities=15% Similarity=-0.006 Sum_probs=126.8
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005161 47 QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVML 126 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 126 (711)
+++...+..+...+.+.|++++|...|+++.+.+|....++..+..++.+.|++++|+..+++....++. +..++..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 5667777788888888888888888888888888888888888888888888888888888888876654 566777777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 005161 127 NAYSQQ-----------GKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSM 195 (711)
Q Consensus 127 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 195 (711)
..+.+. |++++|...+++.++.. +.+...+..+..++...|++++|...|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 66666666666666653 2245556666666666666666666666666544 455556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 005161 196 IEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDM 250 (711)
Q Consensus 196 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 250 (711)
...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666665542 113444555555555555555555555443
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.8e-15 Score=136.76 Aligned_cols=226 Identities=10% Similarity=0.003 Sum_probs=168.3
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-------hhHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC-------ESAY 87 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~ 87 (711)
...+..+...+...|++++|...|+.+++.. .+...+..+..++...|++++|...|.++.+..+.. ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777788888888888888888888876 677788888888888888888888888887765543 4677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 005161 88 SAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV 167 (711)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (711)
..++.+|...|++++|...++++.... |+. ..+.+.|++++|...++.+.+.. +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 888888888888888888888877754 332 33555677888888888877753 33556677777777888
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHH
Q 005161 168 SNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTL 247 (711)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 247 (711)
|++++|...|++..+..+ .+..+|..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888888888776543 356677777777888888888888888777653 224566777777777777777777777
Q ss_pred HHHHHCC
Q 005161 248 DDMLNMG 254 (711)
Q Consensus 248 ~~~~~~~ 254 (711)
+++.+..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 7776654
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=8.1e-17 Score=165.71 Aligned_cols=136 Identities=14% Similarity=0.165 Sum_probs=101.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005161 537 DVISYNTIIAAYGQNKNLESMSSTVQEMQF---DGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNI 613 (711)
Q Consensus 537 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 613 (711)
-..+|++++.+|++.|+.++|.++|.+|.+ .|+.||..+||+||++|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456788888888888888888888877653 46788888888888888888888888888888888888888888888
Q ss_pred HHHHHhhcCC-HHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 005161 614 MIDIYGEQGW-INEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD 677 (711)
Q Consensus 614 l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 677 (711)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. ..++.++++ +.++.|+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 8888888876 467788888888888888888888777544433 344444444 3344443
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=1.5e-14 Score=139.99 Aligned_cols=248 Identities=9% Similarity=0.003 Sum_probs=188.3
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWN-VEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
..+|..+...+...|++++|+..|+.+++.. +.+...|..+..++...|+ +++|+..|+++.+.+|.+..+|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4566667777888888999999999888875 5567788888888888886 9999999999998888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCChHH
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK-VSNMEA 172 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 172 (711)
+...|++++|+..|++++..++. +..+|..+..++.+.|++++|+..++++++.. +.+...|+.+..++.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 88889999999999988887765 77888888888888899999999999888875 3477888888888877 555466
Q ss_pred H-----HHHHHHHHhcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCC-------
Q 005161 173 A-----QRLFLSIKDVGLEPDETTYRSMIEGWGRAG--NYREAKWYYKELKHLGYKPNASNLYTLINLHAKYE------- 238 (711)
Q Consensus 173 a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 238 (711)
| ...|++.....+ -+...|+.+...+...| ++++|++.+.++ +. ...+...+..+..++...|
T Consensus 254 A~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 477777776543 35667777777777777 578888888777 32 2334566777777777653
Q ss_pred --CHHHHHHHHHHH-HHCCCCChhHHHHHHHHH
Q 005161 239 --DEEGAVNTLDDM-LNMGCQHSSILGTLLQAY 268 (711)
Q Consensus 239 --~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~ 268 (711)
..++|..+++++ .+.+|.....+..+...+
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 247778888777 666655555555444444
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.6e-14 Score=134.29 Aligned_cols=225 Identities=12% Similarity=-0.008 Sum_probs=139.4
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV--PN----LENWL 123 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 123 (711)
...+..+...+...|++++|...|+.+.+.+ ....++..++.+|...|++++|.+.++++....+. ++ ..++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3455666677777777777777777777766 55667777777777777777777777776653321 11 35666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 005161 124 VMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAG 203 (711)
Q Consensus 124 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 203 (711)
.+...+...|++++|...++++.+.. |+. ..+.+.|++++|...++++....+ .+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhc
Confidence 67777777777777777777777652 332 234445666777777776665432 23445666666666667
Q ss_pred CHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHH
Q 005161 204 NYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKG 283 (711)
Q Consensus 204 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 283 (711)
++++|...|+++.+... .+..++..+..++...|++++|...++++++..+.....+..++..+...|++++|...++.
T Consensus 154 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777776665432 24555666666666666666666666666665555444455555555555555555555544
Q ss_pred hhh
Q 005161 284 SLY 286 (711)
Q Consensus 284 ~~~ 286 (711)
++.
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=1.9e-14 Score=139.29 Aligned_cols=248 Identities=10% Similarity=0.030 Sum_probs=189.8
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSL-YEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
...|..+..++.+.|++++|+..|+++.+.+|....+|+.+..++...|+ +++|+..|++++..++. +..+|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 45677778888889999999999999999999989999999999999997 99999999999887766 77889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHH
Q 005161 129 YSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGR-AGNYRE 207 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 207 (711)
+.+.|++++|...++++++.. +.+...|..+..++.+.|++++|...|+++.+..+ .+...|+.+...+.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999999875 44788899999999999999999999999988664 467788888888888 555577
Q ss_pred H-----HHHHHHHHhcCCCccHhhHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcC--------
Q 005161 208 A-----KWYYKELKHLGYKPNASNLYTLINLHAKYE--DEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAG-------- 272 (711)
Q Consensus 208 A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------- 272 (711)
| +..|++...... -+...|..+..++...| +.++|...+..+ +..+.....+..++..+.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 7 477888877532 24567777777777777 577787777776 555555556666666666553
Q ss_pred -CCCcHHHHHHHh-hhccCCcchhHHHHHHHHH
Q 005161 273 -RTDNVPRILKGS-LYQHVLFNLTSCSILVMAY 303 (711)
Q Consensus 273 -~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 303 (711)
..++|.++++.+ ...+|. ....|..+...+
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 135566666665 444433 334444444433
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.65 E-value=4.9e-14 Score=141.50 Aligned_cols=377 Identities=12% Similarity=0.026 Sum_probs=193.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCCh---hhHHHHHHHHhhcCCCCcHHHHHHHHHHHHc
Q 005161 299 LVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHL---ANAVKIYSHMHICDGKPNLHIMCTMIDTYSV 375 (711)
Q Consensus 299 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (711)
+...+.+.|++++|.++|++..+.+. ...+..+...+...|+. ++|...|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 34444555555555555555544432 11223333333444444 5666666555532 33334444443333
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH---HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHc
Q 005161 376 MG-----MFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLK---DACAVLETMEKQKDIEPDAYLYCDMLRIYQQC 447 (711)
Q Consensus 376 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (711)
.+ ++++|...|+...+.|. ...+..+...|...+..+ .+.+.+...... .+......+...|...
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~----g~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA----GYPEAGLAQVLLYRTQ 154 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH----TCTTHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHcC
Confidence 33 55666666666666542 224445555555544322 233333333211 1234455555556665
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhcc----CcH
Q 005161 448 GMLDKLSYLYYKILKSGITWNQELYDCVINCCARAL---PIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKA----KLF 520 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~ 520 (711)
+.++++......+.+.-...++..+..+...|...| +.++|+..|++..+.| +++...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 544444443333322222223336666666666677 7777777777777766 34444444555555443 577
Q ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-----CHHHH
Q 005161 521 KRVRKLFSMAKKLGLVDVISYNTIIAA-Y--GQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEG-----QMENF 592 (711)
Q Consensus 521 ~~a~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A 592 (711)
++|...|+... +.++..+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|
T Consensus 234 ~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 234 KTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 77777777766 3455666666666 3 45777778888777777665 4555556666665 44 77788
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhc----cCChHHHHH
Q 005161 593 KNVLRRMKETSCTFDHYTYNIMIDIYGE----QGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGI----AGMVEDAVG 664 (711)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 664 (711)
...|++.. . -+...+..|...|.. ..|+++|...|++..+.| ++.....|...|.. ..++++|..
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 88777776 3 355566666666655 337788888888777654 23445566666653 457778888
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcchHHHHHHHHHHHH
Q 005161 665 LVKEMRENGIEPDKITYTNMITALQRNDKFLEAIKWSLWMK 705 (711)
Q Consensus 665 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 705 (711)
.|+...+.|. ++.......+......++..+|..+.++-+
T Consensus 380 ~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 380 FSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 8887776542 222222222223334456666666666543
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=3.2e-14 Score=133.34 Aligned_cols=245 Identities=9% Similarity=-0.024 Sum_probs=178.9
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAM 90 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 90 (711)
|..++......+...|++++|...|+.+++.. +.+...+..+..++...|++++|...|+.+.+....+ ..+|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34456667778888899999999999888865 3455677888888888899999999998888733221 3458888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCh
Q 005161 91 ITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNM 170 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 170 (711)
+.+|...|++++|++.|++.....+. +..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 88889999999999999888876544 55778888888888899999998888888763 44667777777333345588
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcC-CCcc------HhhHHHHHHHHHcCCCH
Q 005161 171 EAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGN---YREAKWYYKELKHLG-YKPN------ASNLYTLINLHAKYEDE 240 (711)
Q Consensus 171 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~ 240 (711)
++|...|+++.+..+ .+...+..+...+...|+ +++|...|+++.+.. ..|+ ..++..+...+...|++
T Consensus 159 ~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 899988888887543 345667777777777777 777888888776642 1122 14566677777778888
Q ss_pred HHHHHHHHHHHHCCCCChhHHH
Q 005161 241 EGAVNTLDDMLNMGCQHSSILG 262 (711)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~ 262 (711)
++|...++++.+..|.+.....
T Consensus 238 ~~A~~~~~~al~~~p~~~~a~~ 259 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKKAID 259 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhcCccHHHHHH
Confidence 8888888888777766554433
No 45
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=163.71 Aligned_cols=116 Identities=19% Similarity=0.277 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 005161 119 LENWLVMLNAYSQQGKLEEAELVLVSMRE---AGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSM 195 (711)
Q Consensus 119 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 195 (711)
..+|+++|++|++.|++++|.++|++|.+ .|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35677788888888888888877766653 467778888888888888888888888888888777777888888888
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhcCCCccHhhHHHHHHHH
Q 005161 196 IEGWGRAGN-YREAKWYYKELKHLGYKPNASNLYTLINLH 234 (711)
Q Consensus 196 i~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (711)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 887777776 367777888888778888877777666433
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.65 E-value=8.7e-14 Score=139.67 Aligned_cols=104 Identities=16% Similarity=0.067 Sum_probs=43.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCCh---HHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 005161 125 MLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNM---EAAQRLFLSIKDVGLEPDETTYRSMIEGWGR 201 (711)
Q Consensus 125 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 201 (711)
+...+.+.|++++|.+.|++..+.| +...+..|...|...|+. ++|..+|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555566677777777777776654 333444555555556666 6777777666642 44455555553433
Q ss_pred cC-----CHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCC
Q 005161 202 AG-----NYREAKWYYKELKHLGYKPNASNLYTLINLHAKYE 238 (711)
Q Consensus 202 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 238 (711)
.+ ++++|...|++..+.|.. ..+..+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~ 120 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYP 120 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCC
Confidence 33 556667666666665422 24444444444433
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=4.1e-14 Score=132.61 Aligned_cols=240 Identities=11% Similarity=0.009 Sum_probs=149.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVP--NLENWLVMLNA 128 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 128 (711)
..+......+...|++++|...|+.+.+.+|....++..++.+|...|++++|++.++++......+ ...++..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3455566777788888888888888888887777788888888888888888888888877733211 23346777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 005161 129 YSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREA 208 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 208 (711)
+...|++++|...+++..+.. +.+..++..+...+...|++++|...|++..+..+ .+...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888877764 33556777777777777777777777777766432 3444555555233334466667
Q ss_pred HHHHHHHHhcCCCccHhhHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhh
Q 005161 209 KWYYKELKHLGYKPNASNLYTLINLHAKYED---EEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSL 285 (711)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 285 (711)
...|+++.+... .+...+..+..++...|+ .+.|...++++.+...
T Consensus 162 ~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~------------------------------ 210 (272)
T 3u4t_A 162 DSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA------------------------------ 210 (272)
T ss_dssp HHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG------------------------------
T ss_pred HHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh------------------------------
Confidence 666666665421 123344444444444444 4444444444443210
Q ss_pred hccCCc----chhHHHHHHHHHHhcCCHHHHHHHHHhhhhcCC
Q 005161 286 YQHVLF----NLTSCSILVMAYVKHGLIDDAMKVLGDKRWKDT 324 (711)
Q Consensus 286 ~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 324 (711)
..+.+ -..++..+...|...|++++|.+.|++....++
T Consensus 211 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 211 -PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp -GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 00111 124566667777777777777777777666554
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=2.7e-13 Score=122.83 Aligned_cols=201 Identities=13% Similarity=-0.022 Sum_probs=107.7
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
..++..+...+...|++++|.+.|+.+++.. +.+...+..+..++...|++++|...|+++.+..+....++..++.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4455555556666666666666666665543 334555555555666666666666666666665555555556666666
Q ss_pred Hhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHH
Q 005161 95 TRL-SLYEKAEEVIRLIREDKVVP-NLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEA 172 (711)
Q Consensus 95 ~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 172 (711)
... |++++|...++.+...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 666 66666666666655521112 23445555555555566666665555555542 2234455555555555555555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 173 AQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 173 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 217 (711)
|...|+++.+..+..+...+..+...+...|+.+.|..+++.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555554432212333444444444555555555555555443
No 49
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=2.5e-11 Score=125.64 Aligned_cols=456 Identities=11% Similarity=-0.000 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHH
Q 005161 66 VEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGK---LEEAELVL 142 (711)
Q Consensus 66 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~ 142 (711)
..+-...|+.....+|.+..+|..++..+.+.+.++.+..+|+.++..-+. ....|...+..-.+.+. ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~-~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL-MANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 344566677778888888899999999999999999999999998876543 56678888888888888 99999999
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHhhccCCh--------HHHHHHHHHHHh-cCC-CCC-hhhHHHHHHHHH---------h
Q 005161 143 VSMREAG-FSPNIVAYNTLMTGYGKVSNM--------EAAQRLFLSIKD-VGL-EPD-ETTYRSMIEGWG---------R 201 (711)
Q Consensus 143 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~li~~~~---------~ 201 (711)
++.+... .+|++..|...+....+.++. +.+.++|+.... .|. .++ ...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9988863 137888888877655444443 345577777554 344 443 345666665432 2
Q ss_pred cCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHH
Q 005161 202 AGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRIL 281 (711)
Q Consensus 202 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 281 (711)
+++.+.+..+|+++.......-..+|......-...+ . ..+.+++
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~----------------------------------~~a~~~~ 251 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-Q----------------------------------LTARRHI 251 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-T----------------------------------TTHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-c----------------------------------chHHHHH
Confidence 2345566667766664321111122221111100000 0 0011111
Q ss_pred HHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhh------hcCC-----------Ccc--------HhhHHHHHH
Q 005161 282 KGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKR------WKDT-----------VFE--------DNLYHLLIC 336 (711)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~-----------~~~--------~~~~~~l~~ 336 (711)
.+. ...++.|...+.++. .+.. .|. ...|...+.
T Consensus 252 ~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~ 310 (679)
T 4e6h_A 252 GEL---------------------SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR 310 (679)
T ss_dssp HHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH
T ss_pred HHh---------------------hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH
Confidence 100 001111111111100 0000 000 011111111
Q ss_pred HHHccC-------ChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 337 SCKDSG-------HLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMFTEAE-KLYLNLKSSGIRLDLIAFTVVVRMY 408 (711)
Q Consensus 337 ~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~ 408 (711)
.-...+ ..+.+..+|++.+.. ++.....|...+..+...|+.++|. .+|+..... ++.+...|..++...
T Consensus 311 fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~e 388 (679)
T 4e6h_A 311 WESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQY 388 (679)
T ss_dssp HHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 111110 011222334333332 1223344444444444444444443 444444432 222333344444444
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------CCC------------
Q 005161 409 VKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSG---------ITW------------ 467 (711)
Q Consensus 409 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~------------ 467 (711)
.+.|+++.|.++ |+.++... ..|
T Consensus 389 e~~~~~e~aR~i------------------------------------yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 389 ELNTKIPEIETT------------------------------------ILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HHTTCHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHH------------------------------------HHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 444444444444 44443320 001
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCccHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHcCCCchhHHHHHH
Q 005161 468 NQELYDCVINCCARALPIDELSRVFDEMLQH-GFTPNIITLNVMLDIYGKA-KLFKRVRKLFSMAKKLGLVDVISYNTII 545 (711)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 545 (711)
...+|...+....+.++.+.|..+|..+.+. + ......|...+..-.+. ++.+.|..+|+...+..+.++..|...+
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~ 511 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYL 511 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 1235666666666677777777777777664 2 11222222222222233 4477888888877777666666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005161 546 AAYGQNKNLESMSSTVQEMQFDGFS--VSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYG 619 (711)
Q Consensus 546 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (711)
......|+.+.|..+|++......+ .....|...+..-.+.|+.+.+..+.+++.+. .|+......+++-|.
T Consensus 512 ~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 512 DFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhc
Confidence 7777777888888888877765321 13456777777777778888888888888775 344444445555553
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=2.5e-13 Score=125.52 Aligned_cols=199 Identities=13% Similarity=0.010 Sum_probs=95.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
..+..+...+...|++++|...|+.+++.. +.+...+..+..++...|++++|.+.|+++.+.++....++..++..|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 344444445555555555555555555443 2334444445555555555555555555555555444445555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHH
Q 005161 96 RLSLYEKAEEVIRLIREDKVVP-NLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQ 174 (711)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (711)
..|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555544411112 23344444445555555555555555554432 223444444445555555555555
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 175 RLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 217 (711)
..|+++.+... .+...+..+...+...|++++|...++++.+
T Consensus 196 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555444321 2333344444444445555555555554444
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=1.4e-12 Score=121.90 Aligned_cols=188 Identities=14% Similarity=0.064 Sum_probs=85.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCchhHHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKK----SWNVEEAEFAFNQMRKLGLVCESAYSAMI 91 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 91 (711)
.++..+-..+...|++++|.+.|+...+. .+...+..+..+|.. .+++++|...|++..+.+ ...++..+.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 81 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 33444444445555555555555555442 233344444444444 555555555555554443 234444445
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005161 92 TIYTR----LSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQ----QGKLEEAELVLVSMREAGFSPNIVAYNTLMTG 163 (711)
Q Consensus 92 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (711)
..|.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|...+++..+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 55544 455555555555444432 33444444444444 445555555554444432 33344444444
Q ss_pred hhc----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 005161 164 YGK----VSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGR----AGNYREAKWYYKELKH 217 (711)
Q Consensus 164 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 217 (711)
|.. .+++++|...|++..+.+ +...+..+...+.. .+++++|...|++..+
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 443 444444444444444421 23333444444444 4444444444444444
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=6.7e-14 Score=131.44 Aligned_cols=243 Identities=12% Similarity=-0.066 Sum_probs=178.2
Q ss_pred CCHHHHHHHHHHHHhcCC---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHH
Q 005161 448 GMLDKLSYLYYKILKSGI---TWNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVR 524 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 524 (711)
|++++|+..++++.+... +.+..++..+...+...|++++|+..|+++.+.. +.+...+..+..+|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 455666666666655421 1134556667777777788888888888777653 445777788888888888899999
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005161 525 KLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSC 604 (711)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (711)
..++.+.+..+.+..++..++..|...|++++|...++++.+. .|+.......+..+...|++++|...+++.... .
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-S 174 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C
Confidence 9988888888878888888999999999999999999988875 344444444555567779999999999888765 2
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-----hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcc
Q 005161 605 TFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-----LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKI 679 (711)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 679 (711)
+++...+. ++..+...++.++|...++++.+. .|+ ..++..++.+|...|++++|...++++.+ ..|+..
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 249 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHNF 249 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTC
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchhH
Confidence 44444443 666777888889999999888653 232 57788899999999999999999999987 567432
Q ss_pred hHHHHHHHHHhcchHHHHHHHH
Q 005161 680 TYTNMITALQRNDKFLEAIKWS 701 (711)
Q Consensus 680 ~~~~l~~~~~~~~~~~~A~~~~ 701 (711)
.....++...|++++|++.+
T Consensus 250 --~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 --VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHhhHHHH
Confidence 23356788889999998876
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=4.1e-14 Score=132.88 Aligned_cols=226 Identities=11% Similarity=-0.061 Sum_probs=171.2
Q ss_pred HHhcCChHHHHHHHHHHhHcCC---CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH
Q 005161 25 CNKRGCVELGAKWFHMMLECDV---QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 25 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 101 (711)
+...|++++|...|+.+++... +.+...+..+..++...|++++|...|+++.+.+|....+|..++.+|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3456888999999999988632 2246677788888999999999999999999998888889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 005161 102 KAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIK 181 (711)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 181 (711)
+|...|+++....+. +..++..+...+.+.|++++|...++++.+.. |+.......+..+...|++++|...|++..
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998886544 56788888899999999999999999998864 343344444455566789999999997776
Q ss_pred hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 005161 182 DVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP---NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGC 255 (711)
Q Consensus 182 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 255 (711)
.... ++...+ .++..+...++.++|...+++........ +..++..+...+...|++++|...++++....|
T Consensus 172 ~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 6532 343444 36677777888888888888876542211 145666677777777777777777777776554
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=2.6e-13 Score=125.40 Aligned_cols=206 Identities=17% Similarity=0.093 Sum_probs=165.1
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
...+..+...+...|++++|...|+++.+.++....++..++.+|...|++++|.+.++++....+. +...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 4566777888888999999999999998888877888888999999999999999999988776544 667788888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 005161 130 SQQGKLEEAELVLVSMREAGFSP-NIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREA 208 (711)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 208 (711)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|...|++..+... .+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 88999999999999888732233 566777888888888999999999988877543 3567788888888888999999
Q ss_pred HHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh
Q 005161 209 KWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS 258 (711)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 258 (711)
...++++.+.. +.+...+..+...+...|+.++|...++++.+..+...
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 98888887753 23566677777888888888888888888887766554
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=3.4e-13 Score=122.14 Aligned_cols=213 Identities=13% Similarity=0.013 Sum_probs=183.9
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005161 47 QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVML 126 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 126 (711)
+.+...+..+...+...|++++|...|+.+.+..+....++..++.+|...|++++|.+.++++....+. +..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 3456778888999999999999999999999999988899999999999999999999999999886644 677888999
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 005161 127 NAYSQQ-GKLEEAELVLVSMREAGFSP-NIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGN 204 (711)
Q Consensus 127 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 204 (711)
..+... |++++|...++++.+.+..| +...+..+..++...|++++|...|+++.+..+ .+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence 999999 99999999999999832223 467888899999999999999999999988653 457788999999999999
Q ss_pred HHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHH
Q 005161 205 YREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSIL 261 (711)
Q Consensus 205 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 261 (711)
+++|...++++.+.....+...+..+...+...|+.+.+...++.+.+..|......
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999998864324666777888888999999999999999998877766443
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=4.1e-14 Score=130.05 Aligned_cols=198 Identities=12% Similarity=0.066 Sum_probs=78.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
..|..+...+...|++++|...|+.+++.. +.+...+..+..++...|++++|...|+.+.+.++....++..++.++.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 334444444444455555555554444432 2334444444444444455555555555444444444444444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHH
Q 005161 96 RLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQR 175 (711)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 175 (711)
..|++++|...++++.+..+. +...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444444443322 33344444444444444444444444444432 1233344444444444444444444
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 176 LFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 217 (711)
.|+++.+... .+..++..+...+...|++++|...|+++.+
T Consensus 181 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 181 QFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 4444433221 2233334444444444444444444444433
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=1.8e-12 Score=121.30 Aligned_cols=227 Identities=11% Similarity=0.010 Sum_probs=200.9
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR----LSLYEKAEEVIRLIREDKVVPNLENWL 123 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 123 (711)
.+...+..+...+...|++++|...|++..+ +.+..++..+...|.. .+++++|+..|++..+.+ +..++.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3567788888899999999999999999998 4456789999999999 999999999999998875 677888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 005161 124 VMLNAYSQ----QGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK----VSNMEAAQRLFLSIKDVGLEPDETTYRSM 195 (711)
Q Consensus 124 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 195 (711)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 89999999 999999999999999874 78889999999998 999999999999999864 56778888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCChhHHHHHHHH
Q 005161 196 IEGWGR----AGNYREAKWYYKELKHLGYKPNASNLYTLINLHAK----YEDEEGAVNTLDDMLNMGCQHSSILGTLLQA 267 (711)
Q Consensus 196 i~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 267 (711)
...+.. .+++++|...|++..+.+ +...+..+...+.. .+++++|...+++..+.++ ...+..+...
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHH
Confidence 888888 899999999999998874 56778888889988 9999999999999999865 6778889999
Q ss_pred HHh----cCCCCcHHHHHHHhhhccCC
Q 005161 268 YEK----AGRTDNVPRILKGSLYQHVL 290 (711)
Q Consensus 268 ~~~----~~~~~~a~~~~~~~~~~~~~ 290 (711)
+.. .+++++|...++.+...++.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 999 99999999999999988655
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=7.2e-14 Score=128.43 Aligned_cols=218 Identities=17% Similarity=0.063 Sum_probs=172.5
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005161 47 QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVML 126 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 126 (711)
......|..+...+...|++++|...|+++.+.++....++..++.++...|++++|+..++++....+. +..++..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 3556677788888999999999999999999999988899999999999999999999999999887644 678888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHH
Q 005161 127 NAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYR 206 (711)
Q Consensus 127 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 206 (711)
..+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999875 45788899999999999999999999999987653 46778899999999999999
Q ss_pred HHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHH
Q 005161 207 EAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAY 268 (711)
Q Consensus 207 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 268 (711)
+|...|+++.+.. +.+..++..+..++...|++++|...++++.+..+.....+..+....
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 9999999998874 335778889999999999999999999999999888876665554443
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=9.8e-14 Score=138.94 Aligned_cols=279 Identities=12% Similarity=0.021 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCChhh
Q 005161 399 IAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD--AYLYCDMLRIYQQCGMLDKLSYLYYKILKSG-----ITWNQEL 471 (711)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 471 (711)
..+..+...+...|++++|+..|+.........+. ...+..+...+...|++++|...+++..... ......+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34445566677778888888888777654321111 1356666677777777777777776665431 1112234
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC----C-CCccHHHHHHHHHHHhccCc-----------------HHHHHHHHHH
Q 005161 472 YDCVINCCARALPIDELSRVFDEMLQH----G-FTPNIITLNVMLDIYGKAKL-----------------FKRVRKLFSM 529 (711)
Q Consensus 472 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 529 (711)
+..+...+...|++++|...+++..+. + .+.....+..+...|...|+ +++|.+.+.+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 455555566666666666666655432 1 01122334444445555555 4444444443
Q ss_pred HHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-
Q 005161 530 AKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSC-TFD- 607 (711)
Q Consensus 530 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~- 607 (711)
..+... .. ...+.....+..+...+...|++++|...+++..+... .++
T Consensus 209 al~~~~---------------------------~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 209 NLKLMR---------------------------DL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHH---------------------------HH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHH---------------------------Hc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 322110 00 00011223445555556666666666666665543200 011
Q ss_pred ---HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC----CCC-ChHhHHHHHHHHhccCChHHHHHHHHHHHHc----CCC
Q 005161 608 ---HYTYNIMIDIYGEQGWINEVVGVLTELKECG----LRP-DLCSYNTLIKAYGIAGMVEDAVGLVKEMREN----GIE 675 (711)
Q Consensus 608 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~ 675 (711)
...+..+...|...|++++|...+++..+.. ..+ ...++..+..+|...|++++|...+++..+. +..
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 1245556666666666666666666665410 000 1345566666666777777777766666541 111
Q ss_pred C-CcchHHHHHHHHHhcchHHHHHHHHHHHHH
Q 005161 676 P-DKITYTNMITALQRNDKFLEAIKWSLWMKQ 706 (711)
Q Consensus 676 p-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 706 (711)
+ ...++..+..+|...|++++|.+++++..+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 123556666666677777777776666544
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=3.1e-12 Score=121.67 Aligned_cols=238 Identities=8% Similarity=0.003 Sum_probs=151.4
Q ss_pred hHhHHHHHHHHHhc----CCh----HHHHHHHHHHhHcCCCCCHhhHHHHHHHHHc-------cCCH-------HHHHHH
Q 005161 15 FQLFNTLIYACNKR----GCV----ELGAKWFHMMLECDVQPNVATFGMLMGLYKK-------SWNV-------EEAEFA 72 (711)
Q Consensus 15 ~~~~~~~l~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~ 72 (711)
...|...+.-..+. ++. ..|...|+.+++.. +.+...|..+...+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 44555555544333 232 56677777777753 5566677766666542 4664 777777
Q ss_pred HHHHHH-cCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005161 73 FNQMRK-LGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLE-NWLVMLNAYSQQGKLEEAELVLVSMREAGF 150 (711)
Q Consensus 73 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 150 (711)
|++..+ .+|.....|..++..+.+.|++++|.++|++++...+. +.. +|..++..+.+.|++++|..+|++..+..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 777777 46666677777777777777777777777777764432 233 67777777777777777777777777654
Q ss_pred CCCHHHHHHHHHHhh-ccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCc--cHhh
Q 005161 151 SPNIVAYNTLMTGYG-KVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLG-YKP--NASN 226 (711)
Q Consensus 151 ~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~ 226 (711)
+++...|...+.... ..|++++|..+|++..+..+ .+...|..++..+.+.|++++|..+|++..... ..| ....
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 234444443333221 25777777777777665432 355666777777777777777777777777652 233 2445
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 005161 227 LYTLINLHAKYEDEEGAVNTLDDMLNMGCQ 256 (711)
Q Consensus 227 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 256 (711)
|..++......|+.+.|..+++++.+..|.
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 666666666677777777777777665554
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=8.9e-13 Score=131.80 Aligned_cols=301 Identities=10% Similarity=-0.018 Sum_probs=168.5
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCCC-c
Q 005161 362 NLHIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLD----LIAFTVVVRMYVKAGSLKDACAVLETMEKQK---DIEP-D 433 (711)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~-~ 433 (711)
....+......+...|++++|...|+.+.+.... + ..++..+...+...|++++|...++...... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444555556666666777777666666654321 2 2345556666666666666666666543221 1111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CccHHHHHHHHH
Q 005161 434 AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGF-TPNIITLNVMLD 512 (711)
Q Consensus 434 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 512 (711)
..++..+...+...|++++|...+++..+.... .+. ......+..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------------------------~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-------------------------------LNDKVGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------------------HTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-------------------------------cccccchHHHHHHHHH
Confidence 233444444555555555555554444322100 000 001224444455
Q ss_pred HHhccCc--------------------HHHHHHHHHHHHHcCC------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 513 IYGKAKL--------------------FKRVRKLFSMAKKLGL------VDVISYNTIIAAYGQNKNLESMSSTVQEMQF 566 (711)
Q Consensus 513 ~~~~~~~--------------------~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 566 (711)
.|...|+ +++|...+........ ....++..+...|...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555 5666655554433211 1234566666677777777777777766654
Q ss_pred CCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 567 DGF-----SVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET----SCTFD-HYTYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 567 ~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
... ......+..+...+...|++++|...+++..+. +..+. ..++..+...|...|++++|...+++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 310 011235666777777888888888888776642 10111 34667777888888888888888887765
Q ss_pred C----CCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCC-cchHHHHHHHHHhcchH
Q 005161 637 C----GLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMREN----GIEPD-KITYTNMITALQRNDKF 694 (711)
Q Consensus 637 ~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~ 694 (711)
. +-.+. ..++..+..+|...|++++|...+++..+. +..+. ..++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 2 11111 456777788888888888888888887641 21221 35566677777766654
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=2.9e-13 Score=135.37 Aligned_cols=240 Identities=17% Similarity=0.087 Sum_probs=163.9
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHHcC------C
Q 005161 12 KLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPN----VATFGMLMGLYKKSWNVEEAEFAFNQMRKLG------L 81 (711)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~ 81 (711)
......+......+...|++++|...|+.+++.+ +.+ ...+..+..++...|++++|...|+++.... +
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3445566667778889999999999999998874 223 3567778888888999999999988875431 1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCC--------------------HH
Q 005161 82 VCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV-P----NLENWLVMLNAYSQQGK--------------------LE 136 (711)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~ 136 (711)
....++..+...|...|++++|...+++....... + ...++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 12457788888999999999999888877653211 1 13467777788888888 88
Q ss_pred HHHHHHHHHHHc----C-CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHhcCCHH
Q 005161 137 EAELVLVSMREA----G-FSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGL-EPD----ETTYRSMIEGWGRAGNYR 206 (711)
Q Consensus 137 ~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~ 206 (711)
+|...+++..+. + .+....++..+...+...|++++|...|++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888776542 1 011234567777778888888888888877654311 011 225677777788888888
Q ss_pred HHHHHHHHHHhcCC----Ccc-HhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005161 207 EAKWYYKELKHLGY----KPN-ASNLYTLINLHAKYEDEEGAVNTLDDMLN 252 (711)
Q Consensus 207 ~A~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (711)
+|...+++..+... .+. ..++..+...+...|++++|...+++..+
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 88888877764311 111 34556666677777777777777766654
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=1.1e-13 Score=138.68 Aligned_cols=97 Identities=15% Similarity=-0.008 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC------hhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCC-----cchhH
Q 005161 227 LYTLINLHAKYEDEEGAVNTLDDMLNMGCQH------SSILGTLLQAYEKAGRTDNVPRILKGSLYQHVL-----FNLTS 295 (711)
Q Consensus 227 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 295 (711)
+..+...+...|++++|...+++.....+.. ...+..++..+...|++++|...+++++..... ....+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 345 (411)
T 4a1s_A 266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345 (411)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 3444444444444444444444444322211 133444555555555555555555544432111 12346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhcC
Q 005161 296 CSILVMAYVKHGLIDDAMKVLGDKRWKD 323 (711)
Q Consensus 296 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 323 (711)
+..+...|...|++++|...+++.....
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 6777888888888888888887766543
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=2.2e-12 Score=112.41 Aligned_cols=168 Identities=14% Similarity=0.063 Sum_probs=119.0
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN 127 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (711)
.+..+|..+..+|.+.|++++|+..|+++.+.+|....++..++.+|.+.|++++|...++......+. +...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 355667777777777777777777777777777777777777777777777777777777777665544 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 005161 128 AYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYRE 207 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (711)
.+...++++.|...+.+..+.. +.+...+..+..++.+.|++++|.+.|++..+..+ .+..+|..+...+.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 7777777777777777777653 34566677777777777777777777777766543 355667777777777777777
Q ss_pred HHHHHHHHHhc
Q 005161 208 AKWYYKELKHL 218 (711)
Q Consensus 208 A~~~~~~~~~~ 218 (711)
|...|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777777664
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=3.8e-13 Score=130.58 Aligned_cols=276 Identities=10% Similarity=-0.025 Sum_probs=161.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 005161 401 FTVVVRMYVKAGSLKDACAVLETMEKQKDIEPD--AYLYCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINC 478 (711)
Q Consensus 401 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 478 (711)
+......+...|++++|...|+.........+. ...+..+...+...|++++|...+++......
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------- 74 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR------------- 74 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-------------
Confidence 344455566666666666666666544211111 23455555555566666666655555432200
Q ss_pred HHccCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--C----chhHHHHHHHHHHhc
Q 005161 479 CARALPIDELSRVFDEMLQHGFT-PNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL--V----DVISYNTIIAAYGQN 551 (711)
Q Consensus 479 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~ 551 (711)
..+.. .....+..+...+...|++++|...+.+..+..+ + ...++..+...+...
T Consensus 75 ------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 75 ------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 136 (338)
T ss_dssp ------------------HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------cccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc
Confidence 00001 1122333444444455555555555544333221 1 122444555555555
Q ss_pred CC--------------------HHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 005161 552 KN--------------------LESMSSTVQEMQFD----G-FSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET---- 602 (711)
Q Consensus 552 ~~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 602 (711)
|+ +++|...+++.... + .+.....+..+...+...|++++|...+++..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 55 55555555554322 1 1112345667777788888888888888877642
Q ss_pred CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHc----
Q 005161 603 SCTF-DHYTYNIMIDIYGEQGWINEVVGVLTELKEC----GLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMREN---- 672 (711)
Q Consensus 603 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 672 (711)
+..+ ....+..+...+...|++++|...+++..+. +..+. ..++..+..+|...|++++|...++++.+.
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 1011 1236777888888999999999999888752 11111 456788888999999999999999988752
Q ss_pred CCCC-CcchHHHHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 673 GIEP-DKITYTNMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 673 ~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
+-.+ ...++..+..++.+.|++++|.+++++..+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1111 1346778899999999999999999988654
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=2.3e-12 Score=112.29 Aligned_cols=167 Identities=14% Similarity=0.096 Sum_probs=153.8
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
+..+|..+-..|.+.|++++|.+.|+++++.. +.+...+..+..+|.+.|++++|...+..+....+....++..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56789999999999999999999999999986 56788899999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHH
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAA 173 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 173 (711)
+...++++.|...+.+.....+. +..++..+...+.+.|++++|.+.+++..+.. +.+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998887655 67888899999999999999999999999875 45788999999999999999999
Q ss_pred HHHHHHHHhc
Q 005161 174 QRLFLSIKDV 183 (711)
Q Consensus 174 ~~~~~~~~~~ 183 (711)
...|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999999874
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=9.6e-12 Score=118.26 Aligned_cols=216 Identities=9% Similarity=0.034 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh
Q 005161 67 EEAEFAFNQMRKLGLVCESAYSAMITIYTR-------LSLY-------EKAEEVIRLIRE-DKVVPNLENWLVMLNAYSQ 131 (711)
Q Consensus 67 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 131 (711)
+.|..+|+++...+|.+...|..++..+.. .|++ ++|..+|++... ..+. +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHh
Confidence 688899999999999888999998888764 4775 788888888877 3433 55677788888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCCHHHHH
Q 005161 132 QGKLEEAELVLVSMREAGFSPNIV-AYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWG-RAGNYREAK 209 (711)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~ 209 (711)
.|++++|..+|+++++..+ .+.. +|..++..+.+.|++++|..+|++..+..+ ++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888887532 1333 777788777788888888888888876543 23334433322211 257777777
Q ss_pred HHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-C---ChhHHHHHHHHHHhcCCCCcHHHHHHHhh
Q 005161 210 WYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGC-Q---HSSILGTLLQAYEKAGRTDNVPRILKGSL 285 (711)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 285 (711)
.+|++..+.. +.+...+..++..+...|+.++|..+|++++.... + ...++..++..+.+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776652 22455666666677777777777777777766421 1 11334444444444444444444444443
Q ss_pred h
Q 005161 286 Y 286 (711)
Q Consensus 286 ~ 286 (711)
.
T Consensus 269 ~ 269 (308)
T 2ond_A 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 3
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=1.3e-12 Score=132.04 Aligned_cols=212 Identities=8% Similarity=0.012 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcH-HHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 485 IDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLF-KRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQE 563 (711)
Q Consensus 485 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 563 (711)
+++++..++...... +.+...+..+...+...|++ ++|.+.|+++.+..+.+..+|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456666676665542 44677888888889999999 9999999999998888889999999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc--------CCHHH
Q 005161 564 MQFDGFSVSLEAYNSMLDAYGKE---------GQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQ--------GWINE 626 (711)
Q Consensus 564 ~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 626 (711)
..+.. |+...+..+...+... |++++|...++++.+.. +.+...|..+..+|... |++++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 98864 6678888888899998 99999999999998863 45677888999999888 89999
Q ss_pred HHHHHHHHHHCCCCC----ChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhcchHHHHHHHH
Q 005161 627 VVGVLTELKECGLRP----DLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK-ITYTNMITALQRNDKFLEAIKWS 701 (711)
Q Consensus 627 A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~ 701 (711)
|...|++..+. .| +...|..+..+|...|++++|+..|+++.+ +.|+. ..+..+..++...|++++|.+.+
T Consensus 240 A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999984 56 578899999999999999999999999988 66754 67888889999999999998766
Q ss_pred HHH
Q 005161 702 LWM 704 (711)
Q Consensus 702 ~~m 704 (711)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=7.1e-13 Score=128.68 Aligned_cols=116 Identities=15% Similarity=0.077 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHHcC------CCchhHH
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPN----VATFGMLMGLYKKSWNVEEAEFAFNQMRKLG------LVCESAY 87 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~ 87 (711)
+......+...|++++|...|+.+++.. +.+ ...+..+..++...|++++|...++++.+.. +....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344455667777777777777777653 222 2455566666667777777777776654431 1113456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCC
Q 005161 88 SAMITIYTRLSLYEKAEEVIRLIREDKVV-PN----LENWLVMLNAYSQQGK 134 (711)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~ 134 (711)
..+...|...|++++|...+++....... ++ ..++..+...+...|+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 66666666667777776666665432100 11 2244555555555555
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=1.1e-11 Score=122.38 Aligned_cols=229 Identities=8% Similarity=-0.080 Sum_probs=122.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC----CCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhC----C--CCccHHHHH
Q 005161 440 MLRIYQQCGMLDKLSYLYYKILKSG----ITW-NQELYDCVINCCARALPIDELSRVFDEMLQH----G--FTPNIITLN 508 (711)
Q Consensus 440 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~ 508 (711)
....+...|++++|...+++..+.- -.+ ...++..+...+...|+++.|+..+++..+. + .+....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3444556666666666666665431 111 2234555666666666666666666665531 1 011233455
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCC--C----chhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChhhHH
Q 005161 509 VMLDIYGKAKLFKRVRKLFSMAKKLGL--V----DVISYNTIIAAYGQNKNLESMSSTVQEMQFD----GF-SVSLEAYN 577 (711)
Q Consensus 509 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 577 (711)
.+..+|...|++++|...+..+.+..+ + ...++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 556666666777777766665554322 1 1235556666666666666666666665541 11 33344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHCCCCCC-hHhHHHH
Q 005161 578 SMLDAYGKEGQMENFKNVLRRMKET----SCTFDHYTYNIMIDIYGEQGW---INEVVGVLTELKECGLRPD-LCSYNTL 649 (711)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 649 (711)
.+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 6666666666666666666665431 111111223445555666666 45555555443 22232 3445556
Q ss_pred HHHHhccCChHHHHHHHHHHHH
Q 005161 650 IKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 650 ~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666666553
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=6.5e-12 Score=124.00 Aligned_cols=229 Identities=10% Similarity=-0.048 Sum_probs=177.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC----CCCc-cHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC-------CchhHHH
Q 005161 475 VINCCARALPIDELSRVFDEMLQH----GFTP-NIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL-------VDVISYN 542 (711)
Q Consensus 475 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~ 542 (711)
....+...|++++|+..+++..+. +-++ ....+..+...|...|++++|...+.++.+... ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455678899999999999999863 2122 346778888999999999999999998776533 1345788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 005161 543 TIIAAYGQNKNLESMSSTVQEMQFDGF-----SVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET----SC-TFDHYTYN 612 (711)
Q Consensus 543 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 612 (711)
.+...|...|++++|...+++..+... +....++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999998875411 111247888999999999999999999998862 23 33455788
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCC---CCCC-hHhHHHHHHHHhccCC---hHHHHHHHHHHHHcCCCCC-cchHHHH
Q 005161 613 IMIDIYGEQGWINEVVGVLTELKECG---LRPD-LCSYNTLIKAYGIAGM---VEDAVGLVKEMRENGIEPD-KITYTNM 684 (711)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 684 (711)
.+...|...|++++|...+++..+.. -.|. ...+..+...|...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 99999999999999999999987621 0122 3346778889999999 67777766665 34443 3577889
Q ss_pred HHHHHhcchHHHHHHHHHHHHH
Q 005161 685 ITALQRNDKFLEAIKWSLWMKQ 706 (711)
Q Consensus 685 ~~~~~~~~~~~~A~~~~~~m~~ 706 (711)
...|...|++++|.+++++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998865
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=1.8e-12 Score=131.03 Aligned_cols=211 Identities=13% Similarity=0.059 Sum_probs=144.5
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005161 65 NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLY-EKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLV 143 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 143 (711)
.++.+...++......+.....+..+..+|...|++ ++|++.|++.++.++. +..+|..+...|.+.|++++|...|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356666677766666666677777888888888888 8888888877776544 56677777778888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhcc---------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------CCHH
Q 005161 144 SMREAGFSPNIVAYNTLMTGYGKV---------SNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRA--------GNYR 206 (711)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 206 (711)
+..+.. |+...+..+..++... |++++|...|++..+..+ .+...|..+...+... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 877763 5567777777777777 778888888877776543 3566677777777776 7777
Q ss_pred HHHHHHHHHHhcCCC--ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHH
Q 005161 207 EAKWYYKELKHLGYK--PNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPR 279 (711)
Q Consensus 207 ~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 279 (711)
+|+..|++..+.... .+...+..+..++...|++++|...++++.+..|.....+..+...+...|++++|..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777765221 2556666677777777777777777777776665544444444444444444444443
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=1.3e-12 Score=125.15 Aligned_cols=243 Identities=14% Similarity=0.069 Sum_probs=124.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-C
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKL--------GLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED------K-V 115 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~ 115 (711)
.++..+...+...|++++|...|+++.+. .+....++..+...|...|++++|...++++... + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444555555555555555555555542 2222345555555666666666666555554432 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHhhccCChHHHHHHHHHHHhc-----
Q 005161 116 VPNLENWLVMLNAYSQQGKLEEAELVLVSMREA------GF-SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDV----- 183 (711)
Q Consensus 116 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 183 (711)
.....++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|...|++..+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 112344555556666666666666666665543 11 123345566666666777777777777666543
Q ss_pred -CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 005161 184 -GLEP-DETTYRSMIEGWGRAGNYREAKWYYKELKHLG-------YKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMG 254 (711)
Q Consensus 184 -~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 254 (711)
+..| ...++..+...+...|++++|...|+++.+.. ..+.........
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~----------------------- 244 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA----------------------- 244 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH-----------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH-----------------------
Confidence 1111 23456666777777777777777777766531 111111111111
Q ss_pred CCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 005161 255 CQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRW 321 (711)
Q Consensus 255 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 321 (711)
..+......+...+.+.++...++.....++. +..++..+...|.+.|++++|.+.|++...
T Consensus 245 ----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 245 ----EEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----HHHHHC-------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11222233344556666676666666654433 567788888888888888888888877654
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=3.5e-12 Score=122.14 Aligned_cols=253 Identities=13% Similarity=0.098 Sum_probs=167.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIRED-------KVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREA------G- 149 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 149 (711)
..++..++..+...|++++|...++++... +......++..+...+...|++++|...+++..+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 567889999999999999999999998763 22224567888889999999999999999988764 1
Q ss_pred CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 005161 150 FSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDV------GL-EPDETTYRSMIEGWGRAGNYREAKWYYKELKHL---- 218 (711)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 218 (711)
.+....++..+...+...|++++|...|++..+. +. ......+..+...+...|++++|...|+++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 1234567888888999999999999999887753 11 123455778888888999999999999988764
Q ss_pred --CCCc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhH
Q 005161 219 --GYKP-NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTS 295 (711)
Q Consensus 219 --~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 295 (711)
+..| ...++..+..++...|++++|...++++.+..+... .+..+.... ........
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~--------~~~~~~~~ 246 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE------------FGSVDDENK--------PIWMHAEE 246 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH------------HC------C--------CHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc------------CCCCCcchH--------HHHHHHHH
Confidence 2122 244677778888888888888888888775321100 000000000 00002233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhc
Q 005161 296 CSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHIC 357 (711)
Q Consensus 296 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 357 (711)
+..+...+...+.+.++...+.......+ ....++..+...+...|++++|...+++..+.
T Consensus 247 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 247 REECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHC-------CCSCCCC---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34445555666777777777776655432 24567888999999999999999999988653
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=1.2e-10 Score=114.67 Aligned_cols=227 Identities=8% Similarity=-0.055 Sum_probs=139.8
Q ss_pred HHHHccCCHHHHHHHHHHHHhCC----C-CccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--C-----chhHHHHH
Q 005161 477 NCCARALPIDELSRVFDEMLQHG----F-TPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL--V-----DVISYNTI 544 (711)
Q Consensus 477 ~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~l 544 (711)
..+...|++++|+..|++..+.. - +.....+..+...|...|+++.|...+.++....+ + ...++..+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 34455666777777666665421 0 11234455566666777777777777766554321 1 23456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 005161 545 IAAYGQNKNLESMSSTVQEMQFD----GFS-VSLEAYNSMLDAYGKEGQMENFKNVLRRMKET----SCTFDHYTYNIMI 615 (711)
Q Consensus 545 ~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~ 615 (711)
...|...|++++|...+++..+. +.+ ....++..+..+|...|++++|...+++..+. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 77777777777777777666543 111 12345666777777888888888888777651 2222355677777
Q ss_pred HHHhhcCCHHHHHHHHHHHHHCCC---CCC-hHhHHHHHHHHhccCC---hHHHHHHHHHHHHcCCCCC-cchHHHHHHH
Q 005161 616 DIYGEQGWINEVVGVLTELKECGL---RPD-LCSYNTLIKAYGIAGM---VEDAVGLVKEMRENGIEPD-KITYTNMITA 687 (711)
Q Consensus 616 ~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 687 (711)
..+.+.|++++|...+++..+..- .|. ...+..+...|...|+ +.+|+..+++ .+..|+ ...+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHH
Confidence 788888888888888888776211 122 3345566666777777 5666666555 223333 2456677788
Q ss_pred HHhcchHHHHHHHHHHHHH
Q 005161 688 LQRNDKFLEAIKWSLWMKQ 706 (711)
Q Consensus 688 ~~~~~~~~~A~~~~~~m~~ 706 (711)
|...|++++|.+++++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 8888888888888877654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=4.9e-10 Score=110.19 Aligned_cols=163 Identities=7% Similarity=-0.037 Sum_probs=96.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-ccHHHHHHHHHHHhccCcHHHHHHHHHHHHH-----cCCCchhH
Q 005161 471 LYDCVINCCARALPIDELSRVFDEMLQH----GFT-PNIITLNVMLDIYGKAKLFKRVRKLFSMAKK-----LGLVDVIS 540 (711)
Q Consensus 471 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 540 (711)
++..+...|...|++++|...+++..+. +.+ ....++..+..+|...|++++|...+++... ..+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3445555555555666555555555431 111 1233455566666677777777777766665 44444566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHH
Q 005161 541 YNTIIAAYGQNKNLESMSSTVQEMQFDG----FSVSLEAYNSMLDAYGKEGQ---MENFKNVLRRMKETSCTFD-HYTYN 612 (711)
Q Consensus 541 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~ 612 (711)
+..+...|.+.|++++|...+++..+.. -+.....+..+...+...|+ +.+|...+++.. ..|+ ...+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHH
Confidence 6777777777777777777777766542 11122344555555666666 666666665522 2222 33556
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 613 IMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
.+...|...|++++|...|++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677788888888888888887765
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=6.7e-11 Score=103.15 Aligned_cols=165 Identities=13% Similarity=0.066 Sum_probs=108.7
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...+..+...+...|++++|...|+.+++.. +.+...+..+..++...|++++|...++.+.+..+....++..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3445556666777777777777777776653 345666666677777777777777777777776666666677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHH
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQ 174 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (711)
...|++++|.+.++++....+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777766655433 45556666666666777777777776666653 334556666666666666666666
Q ss_pred HHHHHHHh
Q 005161 175 RLFLSIKD 182 (711)
Q Consensus 175 ~~~~~~~~ 182 (711)
..+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=1.9e-10 Score=113.06 Aligned_cols=233 Identities=11% Similarity=0.003 Sum_probs=154.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhHcCCCCCHh----hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc------hhHHHH
Q 005161 20 TLIYACNKRGCVELGAKWFHMMLECDVQPNVA----TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC------ESAYSA 89 (711)
Q Consensus 20 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~ 89 (711)
.....+...|++++|...++..++.....+.. .+..+..++...|++++|...+++.....+.. ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445668899999999999988764222222 34556677788899999999998877643221 234667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHH
Q 005161 90 MITIYTRLSLYEKAEEVIRLIRED----KVV--P-NLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSP----NIVAYN 158 (711)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 158 (711)
+...+...|++++|...+++.... +.. | ...++..+...+...|++++|...+++........ ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 888889999999999988887652 111 2 23455667778888899999999888877643211 234567
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhcCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCCCcc---HhhHHH
Q 005161 159 TLMTGYGKVSNMEAAQRLFLSIKDVGLEPDE-TTYR-----SMIEGWGRAGNYREAKWYYKELKHLGYKPN---ASNLYT 229 (711)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ 229 (711)
.+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 7777888888899888888887643211111 1121 223346678888888888887765432111 223455
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Q 005161 230 LINLHAKYEDEEGAVNTLDDMLN 252 (711)
Q Consensus 230 l~~~~~~~~~~~~a~~~~~~~~~ 252 (711)
+...+...|++++|...++....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66677777777777777776654
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=4.4e-11 Score=125.47 Aligned_cols=165 Identities=13% Similarity=0.090 Sum_probs=128.1
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
..+|+.+-..|.+.|++++|++.|+++++.. +-+...+..+..+|.+.|++++|+..|+++.+.+|....+|..+..+|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5677777778888888888888888888764 445677777888888888888888888888888887778888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHH
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQ 174 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (711)
...|++++|++.|++.++.++. +..++..+...|...|++++|...|++.++.. +.+...+..+..++...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence 8888888888888887776544 56777788888888888888888888887764 336677777888888888888887
Q ss_pred HHHHHHHh
Q 005161 175 RLFLSIKD 182 (711)
Q Consensus 175 ~~~~~~~~ 182 (711)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=4.7e-11 Score=125.26 Aligned_cols=168 Identities=11% Similarity=0.033 Sum_probs=148.0
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN 127 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (711)
.+...++.|..+|.+.|++++|++.|+++.+.+|....+|+.+..+|.+.|++++|++.|++.++.++. +..+|..+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 346788889999999999999999999999999998999999999999999999999999999887655 6788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 005161 128 AYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYRE 207 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (711)
+|.+.|++++|.+.|++.++.. +.+...|+.+..+|.+.|++++|...|++..+..+ -+...|..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999999875 34778899999999999999999999999888653 356778889999999999999
Q ss_pred HHHHHHHHHhc
Q 005161 208 AKWYYKELKHL 218 (711)
Q Consensus 208 A~~~~~~~~~~ 218 (711)
|.+.++++.+.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99988887653
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.33 E-value=8.5e-10 Score=108.42 Aligned_cols=300 Identities=10% Similarity=-0.033 Sum_probs=203.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----hhh
Q 005161 401 FTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDA----YLYCDMLRIYQQCGMLDKLSYLYYKILKSGIT-WN----QEL 471 (711)
Q Consensus 401 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 471 (711)
.......+...|++++|...++......+. .+. ..+..+...+...|++++|...+++....... .+ ..+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344455667789999999999987665421 222 24566677888899999999999887653211 11 123
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC----CCC--c-cHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC-----chh
Q 005161 472 YDCVINCCARALPIDELSRVFDEMLQH----GFT--P-NIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLV-----DVI 539 (711)
Q Consensus 472 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~ 539 (711)
+..+...+...|++++|...+++..+. +.+ | ....+..+...+...|++++|...+.......+. ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 556677788899999999999988752 222 2 2345566778888999999999999988765542 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHH
Q 005161 540 SYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSL-EAYN-----SMLDAYGKEGQMENFKNVLRRMKETSCTF---DHYT 610 (711)
Q Consensus 540 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~ 610 (711)
++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 6777888889999999999999988654212111 1222 23344678899999999998887532111 1224
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCCh-HhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005161 611 YNIMIDIYGEQGWINEVVGVLTELKEC----GLRPDL-CSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTNMI 685 (711)
Q Consensus 611 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 685 (711)
+..+...+...|++++|...+++..+. |..++. .++..+..++...|++++|...+++.... .+.. ..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~~~~----g~~ 329 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL--ANRT----GFI 329 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHH----CCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--hccc----cHH
Confidence 567778888899999999999888652 222222 36667788888999999999999998862 2211 122
Q ss_pred HHHHhcchHHHHHHHHHHHHHhCc
Q 005161 686 TALQRNDKFLEAIKWSLWMKQIGL 709 (711)
Q Consensus 686 ~~~~~~~~~~~A~~~~~~m~~~g~ 709 (711)
..+...| +....+++.+.+.+.
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHHcc--HHHHHHHHHHHhCCC
Confidence 3455555 566677777665543
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=1.7e-10 Score=104.26 Aligned_cols=196 Identities=13% Similarity=0.012 Sum_probs=158.8
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
|...+......+...|++++|...|+.+++...+++...+..+..++...|++++|...|+++.+.+|....+|..+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 45788888899999999999999999999987547888888899999999999999999999999999988999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHh
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNL-------ENWLVMLNAYSQQGKLEEAELVLVSMREAGFSP--NIVAYNTLMTGY 164 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 164 (711)
|...|++++|+..+++.....+. +. ..|..+...+...|++++|.+.+++.++.. +. +...+..+..++
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHH
Confidence 99999999999999999886644 44 457788888999999999999999999863 22 356777788777
Q ss_pred hccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005161 165 GKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHLG 219 (711)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 219 (711)
... +...++++...+. .+...|.... ....+.+++|+..|++..+..
T Consensus 164 ~~~-----~~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 164 YNN-----GADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHH-----HHHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-----HHHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 544 3455566655432 3344444433 334577999999999999863
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=1.2e-10 Score=101.56 Aligned_cols=165 Identities=15% Similarity=0.083 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYS 130 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (711)
..+..+...+...|++++|...|+.+.+..+....++..++..+...|++++|...++.+....+. +..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 344455566666777777777777766666655666666777777777777777777766654432 4555666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 005161 131 QQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKW 210 (711)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 210 (711)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...|++..+... .+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHHH
Confidence 6677777777776666653 33555666666666666666666666666655432 344556666666666666666666
Q ss_pred HHHHHHhc
Q 005161 211 YYKELKHL 218 (711)
Q Consensus 211 ~~~~~~~~ 218 (711)
.++++.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66665543
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=3.4e-10 Score=102.35 Aligned_cols=199 Identities=15% Similarity=0.066 Sum_probs=145.7
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHH
Q 005161 467 WNQELYDCVINCCARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIA 546 (711)
Q Consensus 467 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 546 (711)
.++..+......+...|++++|+..|++.++...+++...+..+..++...|++++|...++...+..+.+..++..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 35577777888888889999999999988876533666677678888888899999999999888888888888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 005161 547 AYGQNKNLESMSSTVQEMQFDGFSVSL-------EAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFD---HYTYNIMID 616 (711)
Q Consensus 547 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 616 (711)
.|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...++++.+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 8999999999999988888763 3344 45777777888888888888888888874 454 456667777
Q ss_pred HHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 617 IYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 617 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
.|... +...++++...+ ..+...|.... ....+.+++|+..+++..+ +.|+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~ 213 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNR 213 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCC
Confidence 66544 334455555432 22333443332 3345667889999998887 67765
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=9.7e-11 Score=110.19 Aligned_cols=228 Identities=14% Similarity=0.103 Sum_probs=163.0
Q ss_pred HHccCCHHHHHHHHHHHHhC-------CCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcC--------CCchhHHHH
Q 005161 479 CARALPIDELSRVFDEMLQH-------GFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLG--------LVDVISYNT 543 (711)
Q Consensus 479 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~ 543 (711)
....|++++|+..+++.++. ..+.....+..+...|...|++++|...++.+.... +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 45678999999999988752 223346677888899999999999999999887652 235678889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHH
Q 005161 544 IIAAYGQNKNLESMSSTVQEMQFDG-------FSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET------SCTF-DHY 609 (711)
Q Consensus 544 l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~ 609 (711)
+...|...|++++|...+.+..+.. .+.....+..+...|...|++++|...++++.+. +-.| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999987651 1334667888889999999999999999998763 1122 345
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHC-------CCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHH---H-cC-CCC
Q 005161 610 TYNIMIDIYGEQGWINEVVGVLTELKEC-------GLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMR---E-NG-IEP 676 (711)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~-~~p 676 (711)
++..+...|...|++++|...++++.+. ...+. ...|..+...+...+....+..+ ..+. + .+ ..|
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcCCCCH
Confidence 7888889999999999999999998862 12333 33444444444444443333322 2221 1 11 122
Q ss_pred C-cchHHHHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 677 D-KITYTNMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 677 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
+ ..++..+..+|...|++++|..++++..+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 367888999999999999999999988653
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=6.8e-10 Score=104.37 Aligned_cols=160 Identities=7% Similarity=-0.117 Sum_probs=90.2
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCC----Cc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---C--CHHHHHHHH
Q 005161 58 GLYKKSWNVEEAEFAFNQMRKLGL----VC--ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV---P--NLENWLVML 126 (711)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~~~~~~~----~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~ 126 (711)
.+|...|++++|...|.+..+..+ .. ..+|+.+..+|...|++++|+..+++....... + ...++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566777777777776654321 11 346667777777777777777777665542110 0 123455666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChh------hHHH
Q 005161 127 NAYSQQ-GKLEEAELVLVSMREAGFSP-N----IVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDET------TYRS 194 (711)
Q Consensus 127 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ 194 (711)
..|... |++++|...+++..+..... + ..+++.+...+.+.|++++|...|++..+..+..... .|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 666664 66666666666665531100 1 2345566666666666666666666666543222111 3455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 005161 195 MIEGWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 195 li~~~~~~g~~~~A~~~~~~~~~ 217 (711)
+..++...|++++|...|++..+
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55556666666666666666654
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=2.7e-10 Score=107.16 Aligned_cols=227 Identities=18% Similarity=0.102 Sum_probs=159.5
Q ss_pred HhcCChHHHHHHHHHHhHc-------CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC--------CCchhHHHHH
Q 005161 26 NKRGCVELGAKWFHMMLEC-------DVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLG--------LVCESAYSAM 90 (711)
Q Consensus 26 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l 90 (711)
...|+++.|...|+++++. ..+....++..+..+|...|++++|...|+++.+.. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888877762 223346677888899999999999999999988652 2235688999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CCCCHHH
Q 005161 91 ITIYTRLSLYEKAEEVIRLIRED------KV-VPNLENWLVMLNAYSQQGKLEEAELVLVSMREA------G-FSPNIVA 156 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 156 (711)
..+|...|++++|.+.+++.... .. .....++..+...+...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 123567888899999999999999999998875 1 1224567
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhc-------CCCCCh-hhHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCc
Q 005161 157 YNTLMTGYGKVSNMEAAQRLFLSIKDV-------GLEPDE-TTYRSMIEGWGRAGNY------REAKWYYKELKHLGYKP 222 (711)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~~ 222 (711)
+..+..++...|++++|...|++..+. ...+.. ..|..+.......+.. ..+...++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999988753 112222 2333333333332222 222222222211 1122
Q ss_pred cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 005161 223 NASNLYTLINLHAKYEDEEGAVNTLDDMLNM 253 (711)
Q Consensus 223 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 253 (711)
...++..+..++...|++++|...+++.++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888899999999999999999988764
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.18 E-value=9.3e-10 Score=97.40 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=55.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHH----------------HHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 005161 20 TLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGM----------------LMGLYKKSWNVEEAEFAFNQMRKLGLVC 83 (711)
Q Consensus 20 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 83 (711)
.....+.+.|++++|...|+.+++.. +.+...|.. +..+|.+.|++++|...|+++.+.+|.+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 87 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN 87 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 34445556666666666666666643 222333333 4444555555555555555555555554
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYS 130 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (711)
..++..+..+|...|++++|+..|++++..++. +..++..+...|.
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~ 133 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 555555555555555555555555555444332 3344444444443
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.18 E-value=1.1e-09 Score=96.81 Aligned_cols=170 Identities=11% Similarity=0.000 Sum_probs=123.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSA----------------MITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
..+......+...|++++|...|+.+.+.+|.+..+|.. +..+|.+.|++++|+..|++.++.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 334445566778999999999999999999887788888 8888888899999998888888776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC--hHHHHHHHHHHHhcCCCCChhhH
Q 005161 115 VVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSN--MEAAQRLFLSIKDVGLEPDETTY 192 (711)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~ 192 (711)
+. +..++..+...+...|++++|...|++.++.. +.+..++..+..+|...|+ ...+...++.... +.|....+
T Consensus 85 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 PN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 55 67788888888888889999988888888875 3467778888777755543 3445555555543 22333334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhh
Q 005161 193 RSMIEGWGRAGNYREAKWYYKELKHLGYKPNASN 226 (711)
Q Consensus 193 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 226 (711)
.....++...|++++|...|++..+. .|+...
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 44555666778888888888888774 455443
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=1.4e-09 Score=100.52 Aligned_cols=101 Identities=12% Similarity=0.046 Sum_probs=73.5
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPN---VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAY 87 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~ 87 (711)
+...+......+.+.|++++|...|+.+++.. +.+ ...+..+..+|.+.|++++|...|+++.+..|.+ ..++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566666677778888888888888887764 222 4566677777888888888888888888776643 4567
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhCCC
Q 005161 88 SAMITIYTR--------LSLYEKAEEVIRLIREDKV 115 (711)
Q Consensus 88 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~ 115 (711)
..+..++.. .|++++|+..|+++....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 777777777 7888888888888776543
No 91
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.16 E-value=3.8e-08 Score=91.05 Aligned_cols=233 Identities=8% Similarity=-0.064 Sum_probs=177.1
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCchhHHHHHHHHH--
Q 005161 20 TLIYACNKRGCV-ELGAKWFHMMLECDVQPNVATFGMLMGLYKKSW--NVEEAEFAFNQMRKLGLVCESAYSAMITIY-- 94 (711)
Q Consensus 20 ~~l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-- 94 (711)
..+++..+.|.. ++|+.+++.+++.+ +-+...|+..-.++...| +++++++.++.+...+|.+..+|+.-..++
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 334444455555 68999999999876 556778888888888888 999999999999999999888888777666
Q ss_pred --Hhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 005161 95 --TRL---SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLE--EAELVLVSMREAGFSPNIVAYNTLMTGYGKV 167 (711)
Q Consensus 95 --~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (711)
... +++++++.+++.+...+++ +..+|....-.+.+.|.++ ++.+.++.+++..+ .|-..|+.-..++.+.
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSS
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 555 7899999999999988776 8888888888888888888 99999999998763 4778888776666666
Q ss_pred CC------hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHhcC--CCccHhhHHHHHHHHHcCC
Q 005161 168 SN------MEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYRE-AKWYYKELKHLG--YKPNASNLYTLINLHAKYE 238 (711)
Q Consensus 168 ~~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 238 (711)
+. ++++++.++++....+ -|...|+.+-..+.+.|+... +.+.+.++.+.+ -..++..+..+..++...|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 65 7888888888877664 577778877777777776444 445666555432 1235667777777887888
Q ss_pred CHHHHHHHHHHHHH-CCCC
Q 005161 239 DEEGAVNTLDDMLN-MGCQ 256 (711)
Q Consensus 239 ~~~~a~~~~~~~~~-~~~~ 256 (711)
+.++|..+++.+.+ .+|.
T Consensus 273 ~~~~A~~~~~~l~~~~Dpi 291 (306)
T 3dra_A 273 KYNESRTVYDLLKSKYNPI 291 (306)
T ss_dssp CHHHHHHHHHHHHHTTCGG
T ss_pred CHHHHHHHHHHHHhccChH
Confidence 88888888888775 3443
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=1.4e-09 Score=100.52 Aligned_cols=205 Identities=11% Similarity=-0.009 Sum_probs=120.0
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCcc---HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCC---chhHH
Q 005161 468 NQELYDCVINCCARALPIDELSRVFDEMLQHGFTPN---IITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLV---DVISY 541 (711)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~ 541 (711)
+...+......+.+.|++++|+..|+++++.. +.+ ...+..+..+|...|++++|...|+.+.+..|. ...++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34455555556666666777777766666542 112 445555666666666666666666666665442 23445
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005161 542 NTIIAAYGQ--------NKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNI 613 (711)
Q Consensus 542 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 613 (711)
..+..++.. .|++++|+..|+++.+.. |.+......+.. +..+... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 555556655 666666666666665542 212222111110 0000000 0111356
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHCCCCCC----hHhHHHHHHHHhcc----------CChHHHHHHHHHHHHcCCCCCcc
Q 005161 614 MIDIYGEQGWINEVVGVLTELKECGLRPD----LCSYNTLIKAYGIA----------GMVEDAVGLVKEMRENGIEPDKI 679 (711)
Q Consensus 614 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~ 679 (711)
+...|...|++++|+..|+++++. .|+ ...+..+..+|... |++++|+..++++.+ ..|+..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~ 229 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDSP 229 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTCT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCCh
Confidence 678888999999999999998874 343 35677778888766 888999999999987 567642
Q ss_pred ----hHHHHHHHHHhcchHHH
Q 005161 680 ----TYTNMITALQRNDKFLE 696 (711)
Q Consensus 680 ----~~~~l~~~~~~~~~~~~ 696 (711)
....+...+...+++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 33444444555555444
No 93
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.15 E-value=3.5e-07 Score=92.03 Aligned_cols=385 Identities=9% Similarity=-0.041 Sum_probs=202.2
Q ss_pred CCCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCC-HHHHHHHHHHHHHc---CCCchhH
Q 005161 11 AKLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWN-VEEAEFAFNQMRKL---GLVCESA 86 (711)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~---~~~~~~~ 86 (711)
+.--+.+|...+..+-. |+++.+..+|+..+.. .|+...|...+....+.++ .+....+|+.+... ++.+...
T Consensus 11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i 87 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL 87 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence 55667888888888776 8899999999999874 4788899888887766663 45567778877653 3445677
Q ss_pred HHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 87 YSAMITIYT----RLSLYEKAEEVIRLIREDKVVPNL-ENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLM 161 (711)
Q Consensus 87 ~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (711)
|...+..+. .+++.+.+..+|++.+..... +. ..|...... .+......+..++.+..
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~--------------- 150 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMG-SLSELWKDFENF-ELELNKITGKKIVGDTL--------------- 150 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCT-THHHHHHHHHHH-HHHHCHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhh-hHHHHHHHHHHH-HHHhccccHHHHHHHHh---------------
Confidence 888777654 346677888888888774221 21 122211111 11111112222222111
Q ss_pred HHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--C-----CHHHHHHHHHHHHhcCCCccHhhHHHHHHHH
Q 005161 162 TGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRA--G-----NYREAKWYYKELKHLGYKPNASNLYTLINLH 234 (711)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (711)
+.+..|+.+++.+...-...+...|...+.--... | ..+++..+|+++.... +.+...|...+..+
T Consensus 151 ------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~ 223 (493)
T 2uy1_A 151 ------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYL 223 (493)
T ss_dssp ------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 22333444444333210001222343333321111 0 0234556666666542 23455666666666
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHH
Q 005161 235 AKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMK 314 (711)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 314 (711)
...|+.+.|..++++.+.. |....++...+. ..+.++ +++.+... +.. ...+.+.
T Consensus 224 ~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~----~~e~~~---~~~~l~~~---------------~~~-~~~~~~~- 278 (493)
T 2uy1_A 224 IGIGQKEKAKKVVERGIEM-SDGMFLSLYYGL----VMDEEA---VYGDLKRK---------------YSM-GEAESAE- 278 (493)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHH----HTTCTH---HHHHHHHH---------------TC----------
T ss_pred HHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHh----hcchhH---HHHHHHHH---------------HHh-hccchhh-
Confidence 6777777777777777776 443332221111 111111 11111110 000 0000000
Q ss_pred HHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCC
Q 005161 315 VLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSV-MGMFTEAEKLYLNLKSSG 393 (711)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~ 393 (711)
. .........|...+....+.++.+.|..+|+.. +.. ..+...|......-.. .++.+.|..+|+...+.-
T Consensus 279 ----~--~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 279 ----K--VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred ----h--hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 0 000001234555555555666677777777777 221 1233334322222222 235788888888777652
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005161 394 IRLDLIAFTVVVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILK 462 (711)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 462 (711)
+.++..+...+....+.|+.+.|..+|+.+. .....|...+..-...|+.+.+..++++..+
T Consensus 351 -~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 -PDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234555666776777788888888888772 2466677777776777888888887777654
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=3.3e-08 Score=90.24 Aligned_cols=182 Identities=10% Similarity=0.000 Sum_probs=125.6
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 488 LSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL--VDVISYNTIIAAYGQNKNLESMSSTVQEMQ 565 (711)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 565 (711)
++..|++....+ .++......+..++...|++++|++++......++ .+...+..++..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566677666554 34455555677777888888888888888777665 567777788888888888888888888887
Q ss_pred HCCCCC-----ChhhHHHHHHHH--HhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 566 FDGFSV-----SLEAYNSMLDAY--GKEG--QMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 566 ~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
+. .| +..+...+..++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 44 245555555553 3334 888888888888664 45533334444578888999999998887654
Q ss_pred C-----CC---CCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 637 C-----GL---RPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 637 ~-----~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
. .- .|+ +.++..++......|+ +|.++++++.+ ..|+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCC
Confidence 2 00 244 6777566666666676 78888888888 67775
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=6.1e-09 Score=95.00 Aligned_cols=183 Identities=11% Similarity=-0.011 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 69 AEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKV-VPNLENWLVMLNAYSQQGKLEEAELVLVSMRE 147 (711)
Q Consensus 69 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 147 (711)
|...|+.+.+.+.....++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444443322333344555555555555555555555544332 11334444555555555555555555555554
Q ss_pred cCCCC-----CHHHHHHHHHHh--hc--cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 005161 148 AGFSP-----NIVAYNTLMTGY--GK--VSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELKHL 218 (711)
Q Consensus 148 ~~~~~-----~~~~~~~l~~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 218 (711)
. .| +..+...|+.++ .. .+++.+|..+|+++.+.. |+..+...++.++.+.|++++|...++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 23 123333333331 11 125555555555554421 32222223333455555555555555544332
Q ss_pred C---------CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 005161 219 G---------YKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQH 257 (711)
Q Consensus 219 ~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 257 (711)
. -+.++.++..++......|+ .|.+++.++.+..|..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 0 01133344344433333443 4455555555544443
No 96
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.13 E-value=1.1e-07 Score=95.82 Aligned_cols=125 Identities=10% Similarity=0.105 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 005161 364 HIMCTMIDTYSVMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKA-GSLKDACAVLETMEKQKDIEPDAYLYCDMLR 442 (711)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 442 (711)
..|...+....+.++.+.|..+|+.. .. ...+..+|......-... ++.+.|..+|+...+..+- +...+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 46777777777888999999999999 32 223555665433333333 4799999999998776533 3345666778
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 443 IYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQ 497 (711)
Q Consensus 443 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 497 (711)
.....|+.+.|..+|+.+. .....|...+..-...|+.+.+..++++..+
T Consensus 363 ~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888999999999999983 2567788888877788999999998888774
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=4e-09 Score=85.99 Aligned_cols=128 Identities=23% Similarity=0.229 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL 97 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (711)
|..+...+...|++++|..+|+.+++.+ +.+...+..+...+...|++++|...|+++...++.....+..++.++...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4444455555555555555555555443 233444444555555555555555555555555444444455555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMRE 147 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 147 (711)
|++++|...++.+....+. +..++..++..+.+.|++++|...++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555554443322 233444444444445555555554444443
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.11 E-value=4.1e-08 Score=90.86 Aligned_cols=245 Identities=11% Similarity=-0.011 Sum_probs=158.7
Q ss_pred HHHHccC-CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----H
Q 005161 58 GLYKKSW-NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS--LYEKAEEVIRLIREDKVVPNLENWLVMLNAY----S 130 (711)
Q Consensus 58 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 130 (711)
++..+.| .-++|+..++.+...+|....+|+.-..++...| .++++++.++.++..++. +..+|+.....+ .
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHH
Confidence 3333444 4468999999999999998899999888888888 899999999998887765 556666655555 4
Q ss_pred hc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChH--HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 005161 131 QQ---GKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNME--AAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNY 205 (711)
Q Consensus 131 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 205 (711)
.. +++++++.+++.+.+.. +.+-.+|+.-.-++.+.|.++ ++++.++++.+..+ .+...|+.....+...|..
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGG
T ss_pred hccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccc
Confidence 44 66777777777777764 336666666655555566665 66666666665443 3444454433333333220
Q ss_pred HHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCc-HHHHHHHh
Q 005161 206 REAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDN-VPRILKGS 284 (711)
Q Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~ 284 (711)
.+ ...++++.+.+..++...|.+.+.+..+...+.+.|+... +..+.+++
T Consensus 197 ----------------~~-------------~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~ 247 (306)
T 3dra_A 197 ----------------AT-------------DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQF 247 (306)
T ss_dssp ----------------CC-------------HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT
T ss_pred ----------------ch-------------hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 00 0014556666666666666666666666666666666444 33455555
Q ss_pred hhcc--CCcchhHHHHHHHHHHhcCCHHHHHHHHHhhhhc-CCCccHhhHHHHH
Q 005161 285 LYQH--VLFNLTSCSILVMAYVKHGLIDDAMKVLGDKRWK-DTVFEDNLYHLLI 335 (711)
Q Consensus 285 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 335 (711)
...+ ...+..++..++.+|.+.|+.++|.++++.+... ++. ....|+...
T Consensus 248 ~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi-r~~yW~~~~ 300 (306)
T 3dra_A 248 VDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPI-RSNFWDYQI 300 (306)
T ss_dssp EEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG-GHHHHHHHH
T ss_pred HhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChH-HHHHHHHHH
Confidence 4432 1236778888888898899999999999988763 433 444555443
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.11 E-value=1.1e-09 Score=116.02 Aligned_cols=153 Identities=10% Similarity=-0.099 Sum_probs=70.6
Q ss_pred HhcCChHHHHHHHHHHh--------HcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 26 NKRGCVELGAKWFHMML--------ECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL 97 (711)
Q Consensus 26 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (711)
...|++++|++.++.++ +.. +.+...+..+..++.+.|++++|...|+++.+.+|.+..+|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 34444555555554444 221 223334444444444455555555555555544444444445555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHH
Q 005161 98 SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLF 177 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 177 (711)
|++++|+..|++..+.++. +...+..+..++.+.|++++ ...|++.++.. +.+...|..+..++.+.|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555544443322 33344444444444455544 44444444432 223444444444444445555555444
Q ss_pred HHHHh
Q 005161 178 LSIKD 182 (711)
Q Consensus 178 ~~~~~ 182 (711)
++..+
T Consensus 558 ~~al~ 562 (681)
T 2pzi_A 558 DEVPP 562 (681)
T ss_dssp HTSCT
T ss_pred Hhhcc
Confidence 44443
No 100
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=3.4e-09 Score=99.58 Aligned_cols=201 Identities=12% Similarity=0.024 Sum_probs=150.8
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHc----CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc------
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLEC----DVQP-NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC------ 83 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------ 83 (711)
...|......|...|++++|.+.|..+++. |.++ ...+|..+..+|.+.|++++|...|++..+..+..
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 116 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 346777788899999999999999988874 2112 25688889999999999999999999987754321
Q ss_pred hhHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---
Q 005161 84 ESAYSAMITIYTRL-SLYEKAEEVIRLIREDKVVP-N----LENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNI--- 154 (711)
Q Consensus 84 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 154 (711)
..++..+..+|... |++++|+..|++.+...+.. + ..++..+...+.+.|++++|...+++..+.......
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 35788999999996 99999999999987632111 1 356888899999999999999999999987543322
Q ss_pred ---HHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChh------hHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 005161 155 ---VAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDET------TYRSMIEGWG--RAGNYREAKWYYKELKH 217 (711)
Q Consensus 155 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~--~~g~~~~A~~~~~~~~~ 217 (711)
..|..+..++...|++++|...|++..+.. |+.. .+..++..+. ..+++++|+..|+++..
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 156778888999999999999999987642 3211 2334455553 34667888888776644
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.10 E-value=8.9e-09 Score=92.47 Aligned_cols=187 Identities=7% Similarity=-0.146 Sum_probs=127.0
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch---hHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPN--VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE---SAYS 88 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~ 88 (711)
+...+......+.+.|++++|...|+.+++..+... ...+..+..+|.+.|++++|...|+++.+..|.+. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 345566677788899999999999999998642211 35677788889999999999999999999888764 3666
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005161 89 AMITIYTR------------------LSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGF 150 (711)
Q Consensus 89 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 150 (711)
.+..++.. .|++++|...|++++...+. +..++...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH----
Confidence 66666654 45677777777777665433 22222111100 00000000
Q ss_pred CCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005161 151 SPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPD--ETTYRSMIEGWGRAGNYREAKWYYKELKHLG 219 (711)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 219 (711)
.....+...+.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123456778888999999999999887543211 2457778888999999999999999888764
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.10 E-value=4.4e-10 Score=93.24 Aligned_cols=143 Identities=10% Similarity=-0.094 Sum_probs=101.2
Q ss_pred HHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHH
Q 005161 24 ACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKA 103 (711)
Q Consensus 24 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 103 (711)
.+...|+++.|+..++...... +.+...+..+..+|.+.|++++|.+.|+++.+.+|.+..+|..+..+|...|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHH
Confidence 3455677788888887776642 233445556777788888888888888888888887778888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHhhccCC
Q 005161 104 EEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELV-LVSMREAGFSPNIVAYNTLMTGYGKVSN 169 (711)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (711)
+..|++..+.++. +..++..+...|.+.|++++|.+. +++..+.. |.++.+|......+...|+
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 8888887776644 566777777778888887665554 46777654 3356666666666655553
No 103
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=6.5e-09 Score=84.76 Aligned_cols=128 Identities=21% Similarity=0.203 Sum_probs=75.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005161 53 FGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQ 132 (711)
Q Consensus 53 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (711)
+..+...+...|++++|..+|+.+.+.++....++..++..+...|++++|...++++...++. +...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHh
Confidence 4455556666666666666666666666555556666666666666666666666666554332 344555555566666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 005161 133 GKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKD 182 (711)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (711)
|++++|...++++.+.. +.+...+..++..+.+.|++++|...|+++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666655543 22445555555555556666666666655544
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.09 E-value=3.7e-09 Score=98.84 Aligned_cols=167 Identities=14% Similarity=0.010 Sum_probs=110.1
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHH
Q 005161 47 QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLEN-WLVM 125 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l 125 (711)
+.+...+..+...+.+.|++++|...|+++.+.+|.+..++..++.+|.+.|++++|...++++....+ +... ....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHH
Confidence 444555566666677777777777777777777777777777777777777777777777777665443 3222 2222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCC
Q 005161 126 LNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEP-DETTYRSMIEGWGRAGN 204 (711)
Q Consensus 126 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 204 (711)
...+.+.++.+.|...+++..... +.+...+..+...+...|++++|...|.++.+..+.. +...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 333555666677777777777664 3466677777777777777777777777776654321 24556777777777777
Q ss_pred HHHHHHHHHHHH
Q 005161 205 YREAKWYYKELK 216 (711)
Q Consensus 205 ~~~A~~~~~~~~ 216 (711)
.++|...|++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 777777766654
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.08 E-value=1.3e-09 Score=93.51 Aligned_cols=163 Identities=14% Similarity=0.038 Sum_probs=111.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA-YS 130 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 130 (711)
.+..+...+.+.|++++|...|+++.+.+|.+..++..+..++...|++++|+..++.+....+ +...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 3445666677788888888888888877777777888888888888888888888887765543 33322222111 12
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 005161 131 QQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEP-DETTYRSMIEGWGRAGNYREAK 209 (711)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 209 (711)
..++...|...+++..+.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2233344677777777764 3357777778888888888888888888877755432 2456777777788888888888
Q ss_pred HHHHHHHh
Q 005161 210 WYYKELKH 217 (711)
Q Consensus 210 ~~~~~~~~ 217 (711)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776643
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=2.3e-09 Score=92.04 Aligned_cols=164 Identities=11% Similarity=-0.042 Sum_probs=132.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH-H
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI-Y 94 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~ 94 (711)
..+......+.+.|++++|...|+.+++.. +.+...+..+..++.+.|++++|...|+++....| +...+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 456677788999999999999999999865 55778889999999999999999999999988887 54433333322 2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCChHHH
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSP-NIVAYNTLMTGYGKVSNMEAA 173 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 173 (711)
...+...+|+..+++....++. +...+..+...+...|++++|...++++.+..+.+ +...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2333445678999998887654 67888899999999999999999999999875433 356888999999999999999
Q ss_pred HHHHHHHHh
Q 005161 174 QRLFLSIKD 182 (711)
Q Consensus 174 ~~~~~~~~~ 182 (711)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=9e-10 Score=91.35 Aligned_cols=145 Identities=9% Similarity=-0.054 Sum_probs=91.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005161 56 LMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKL 135 (711)
Q Consensus 56 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 135 (711)
|..++...|+++.|+..+.......|.....+..+..+|.+.|++++|++.|++.+..++. +..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 3444556677777777777776665555566677777777777777777777777766544 566777777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHH-HHHHHhcCCCCChhhHHHHHHHHHhcC
Q 005161 136 EEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRL-FLSIKDVGLEPDETTYRSMIEGWGRAG 203 (711)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g 203 (711)
++|...|++.++.. +.+...+..+..+|.+.|++++|.+. +++..+..+ .++..|......+...|
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 77777777777664 23566677777777777776654443 466555432 24444554444444444
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=8.7e-09 Score=109.03 Aligned_cols=173 Identities=8% Similarity=-0.087 Sum_probs=127.7
Q ss_pred HccCCHHHHHHHHHHHH--------HcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005161 61 KKSWNVEEAEFAFNQMR--------KLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQ 132 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (711)
...|++++|++.|+++. +.+|....++..+..+|...|++++|+..|+++.+.++. +...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 56788888888888888 667777778888888888888888888888888776544 667777788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 005161 133 GKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYY 212 (711)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 212 (711)
|++++|...|++.++.. +.+...+..+..++.+.|++++ .+.|++..+.++ .+...|..+...+.+.|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888764 3366777788888888888888 888888777543 35667777888888888888888888
Q ss_pred HHHHhcCCCcc-HhhHHHHHHHHHcCCC
Q 005161 213 KELKHLGYKPN-ASNLYTLINLHAKYED 239 (711)
Q Consensus 213 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 239 (711)
+++.+. .|+ ...+..+..++...++
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 877664 333 4455556666555443
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=2.5e-08 Score=89.53 Aligned_cols=191 Identities=7% Similarity=-0.134 Sum_probs=132.8
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNL--ENWL 123 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 123 (711)
+...+..+...+.+.|++++|...|+.+.+..|.+ ..++..++.+|.+.|++++|+..|+++.+..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455667777889999999999999999987765 368899999999999999999999999886644221 2444
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCC
Q 005161 124 VMLNAYSQ------------------QGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGL 185 (711)
Q Consensus 124 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 185 (711)
.+..++.. .|++++|...|+++++.. +.+...+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHHH----
Confidence 44555543 456666777777666652 1122222211110 00001110
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCh
Q 005161 186 EPDETTYRSMIEGWGRAGNYREAKWYYKELKHLGYKP--NASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHS 258 (711)
Q Consensus 186 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 258 (711)
.....+...+.+.|++++|...|+++.+..... ....+..+..++.+.|+.++|...++.+...+|...
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 112346778889999999999999998863221 135688889999999999999999999999888764
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.01 E-value=3.3e-08 Score=87.60 Aligned_cols=174 Identities=7% Similarity=-0.047 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC----CHHHHHHHHH
Q 005161 487 ELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNK----NLESMSSTVQ 562 (711)
Q Consensus 487 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 562 (711)
+|.+.|++..+.| +...+..+...|...+++++|...|++..+.+ ++..+..+...|.. + ++++|...|+
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3455555555543 34444455555555555666666655555442 34444445554444 3 4555555555
Q ss_pred HHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhh----cCCHHHHHHHHHH
Q 005161 563 EMQFDGFSVSLEAYNSMLDAYGK----EGQMENFKNVLRRMKETSCT-FDHYTYNIMIDIYGE----QGWINEVVGVLTE 633 (711)
Q Consensus 563 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 633 (711)
+..+.| +...+..+...|.. .+++++|...+++..+.+.. .++..+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554433 23334444444443 44555555555555443210 013344444444444 4445555555555
Q ss_pred HHHCCCCCChHhHHHHHHHHhcc-C-----ChHHHHHHHHHHHH
Q 005161 634 LKECGLRPDLCSYNTLIKAYGIA-G-----MVEDAVGLVKEMRE 671 (711)
Q Consensus 634 ~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~ 671 (711)
..+. ..+...+..|...|... | ++++|+..+++..+
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 5442 12333444444444321 1 44555555555444
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=7.8e-09 Score=96.64 Aligned_cols=169 Identities=8% Similarity=-0.095 Sum_probs=143.6
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHH
Q 005161 12 KLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMI 91 (711)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 91 (711)
+.+...+..+...+.+.|++++|...|+.+++.. +.+...+..+..++.+.|++++|...++++...+|..........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3445667777788999999999999999999976 557788889999999999999999999999988886555555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCCh
Q 005161 92 TIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSP-NIVAYNTLMTGYGKVSNM 170 (711)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 170 (711)
..+...++.++|...+++.....+. +...+..+...+...|++++|...+.++++..+.. +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 6688889999999999999887765 77889999999999999999999999999975332 267899999999999999
Q ss_pred HHHHHHHHHHHh
Q 005161 171 EAAQRLFLSIKD 182 (711)
Q Consensus 171 ~~a~~~~~~~~~ 182 (711)
+.|...|++...
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999887653
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=4.6e-08 Score=86.65 Aligned_cols=178 Identities=13% Similarity=0.054 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC----CHHHHHHHH
Q 005161 32 ELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS----LYEKAEEVI 107 (711)
Q Consensus 32 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 107 (711)
.+|.++|+...+.| +...+..|..+|...+++++|...|++..+.+ +..++..+...|.. + ++++|+..|
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 45677788887764 67777778888888888888888888887765 35677778888777 6 788888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhc----cCChHHHHHHHH
Q 005161 108 RLIREDKVVPNLENWLVMLNAYSQ----QGKLEEAELVLVSMREAGFS-PNIVAYNTLMTGYGK----VSNMEAAQRLFL 178 (711)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 178 (711)
++..+.+ +..++..+...|.. .+++++|...+++..+.+.. .++..+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8877654 55667677777766 77888888888888776521 126677777777776 678888888888
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 005161 179 SIKDVGLEPDETTYRSMIEGWGRA-G-----NYREAKWYYKELKHLGY 220 (711)
Q Consensus 179 ~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~~~ 220 (711)
+..+.+ .+...+..|...|... | ++++|...|++..+.|.
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 877641 3444566666666543 2 77888888888777653
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.96 E-value=1.5e-08 Score=105.53 Aligned_cols=154 Identities=9% Similarity=-0.028 Sum_probs=96.2
Q ss_pred cCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 005161 28 RGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVI 107 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 107 (711)
.|++++|.+.|+++++.. +.+...+..+..++.+.|++++|.+.|+++.+.+|....++..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356777777777777653 3456667777777777777777777777777777776777777777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc---CChHHHHHHHHHHHhcC
Q 005161 108 RLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV---SNMEAAQRLFLSIKDVG 184 (711)
Q Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 184 (711)
++..+.++. +...+..+...+.+.|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.|++..+.+
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 777665543 45667777777777777777777777777664 23566666777777777 77777777777776654
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=2.7e-08 Score=103.67 Aligned_cols=150 Identities=9% Similarity=-0.066 Sum_probs=65.5
Q ss_pred CcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 005161 518 KLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLR 597 (711)
Q Consensus 518 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 597 (711)
|++++|.+.++++.+..+.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344445555554444444444455555555555555555555555554432 2334444445555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhcc---CChHHHHHHHHHHHH
Q 005161 598 RMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD-LCSYNTLIKAYGIA---GMVEDAVGLVKEMRE 671 (711)
Q Consensus 598 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 671 (711)
+..+.. +.+...+..+...|...|++++|.+.+++..+. .|+ ...+..+..++... |++++|.+.++++.+
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 554431 223444555555555555555555555555542 232 44455555555555 555555555555554
No 115
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.89 E-value=5.2e-08 Score=87.66 Aligned_cols=192 Identities=11% Similarity=-0.029 Sum_probs=143.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCC-----CC-----------
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVCESAYSAM-------ITIYTRLSLYEKAEEVIRLIREDKVV-----PN----------- 118 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~----------- 118 (711)
..++...|.+.|.++.+.+|....+|..+ ...+...++..+++..++......+. .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 57899999999999999999989999988 67888888888888777776551110 01
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCC--ChhhH
Q 005161 119 ----LENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEP--DETTY 192 (711)
Q Consensus 119 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~ 192 (711)
..........+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .| ....+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~ 174 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAG 174 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHH
Confidence 2234456777888999999999999888754 433366666778889999999999998665421 11 12357
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcc--HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 005161 193 RSMIEGWGRAGNYREAKWYYKELKHLGYKPN--ASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQ 256 (711)
Q Consensus 193 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 256 (711)
..+..++.+.|++++|+..|++.......|. .........++...|+.++|..+|+++....|.
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 7788889999999999999999875433243 335566677788889999999999988887776
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.89 E-value=2.1e-06 Score=80.20 Aligned_cols=110 Identities=11% Similarity=0.039 Sum_probs=74.4
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CHH
Q 005161 60 YKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS-LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQ-G-KLE 136 (711)
Q Consensus 60 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 136 (711)
..+.+..++|+++++.+...+|....+|+.-..++...| .+++++..++.++..+++ +..+|+.....+.+. + +++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 334445567888888888888887778887777777777 478888888888777766 667777766666665 5 677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChH
Q 005161 137 EAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNME 171 (711)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 171 (711)
+++++++.+.+.. +.+..+|+.-.-++.+.|.++
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccc
Confidence 7777777777654 335666665444444434333
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.88 E-value=5.3e-08 Score=77.54 Aligned_cols=94 Identities=12% Similarity=0.003 Sum_probs=45.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 54 GMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 54 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
..+...|.+.|++++|.+.|+++.+.+|....+|..+..+|.+.|++++|+..|++.++.++. +..+|..+..++...|
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHCC
Confidence 334444444455555555555544444444444444455555555555555555444443322 3344444444444555
Q ss_pred CHHHHHHHHHHHHHc
Q 005161 134 KLEEAELVLVSMREA 148 (711)
Q Consensus 134 ~~~~a~~~~~~~~~~ 148 (711)
++++|.+.|++.++.
T Consensus 96 ~~~~A~~~~~~al~l 110 (126)
T 4gco_A 96 EWSKAQRAYEDALQV 110 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 555555555554444
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=3.8e-08 Score=93.13 Aligned_cols=198 Identities=10% Similarity=0.017 Sum_probs=105.7
Q ss_pred cCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 005161 28 RGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKK-SWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEV 106 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 106 (711)
.|++.+|.+++++..+.. +.. +.+ .++++.|...|..+ +..|...|++++|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 456667777776665532 110 122 46666666666543 4566677788887777
Q ss_pred HHHHHhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHhhccCChHHHHHH
Q 005161 107 IRLIREDKV---VP--NLENWLVMLNAYSQQGKLEEAELVLVSMREAGF---SP--NIVAYNTLMTGYGKVSNMEAAQRL 176 (711)
Q Consensus 107 ~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~ 176 (711)
|++...... .+ ...++..+...|.+.|++++|...+++.++... .+ ...+++.+..+|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776654211 00 123566666677777777777777776654310 11 12455566666666 677777766
Q ss_pred HHHHHhcCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCcc-HhhHHHHHHHHHcCCCHHHHHHH
Q 005161 177 FLSIKDVGLEP-----DETTYRSMIEGWGRAGNYREAKWYYKELKHLG----YKPN-ASNLYTLINLHAKYEDEEGAVNT 246 (711)
Q Consensus 177 ~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 246 (711)
|++..+..... ...+++.+...+.+.|++++|+..|++..... ..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66655421100 02345555666666666666666666655431 1111 11333333444444555555555
Q ss_pred HHHHH
Q 005161 247 LDDML 251 (711)
Q Consensus 247 ~~~~~ 251 (711)
+++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55544
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.88 E-value=1.4e-06 Score=81.45 Aligned_cols=177 Identities=10% Similarity=0.003 Sum_probs=142.3
Q ss_pred HHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc-C-CH
Q 005161 24 ACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSW-NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL-S-LY 100 (711)
Q Consensus 24 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 100 (711)
.....+..++|+++++.+++.+ +-+..+|+..-.++...| .+++++..++.+...+|.+..+|+.-..++... + ++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence 3344555578999999999986 567788888888888888 599999999999999999999999988888877 7 89
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC---
Q 005161 101 EKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLE--------EAELVLVSMREAGFSPNIVAYNTLMTGYGKVSN--- 169 (711)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 169 (711)
++++++++.++..+++ |..+|....-.+.+.|.++ ++.+.++++++.. +.|...|+....++.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 9999999999998876 8888877766666666666 8999999999876 4488889888888877776
Q ss_pred ----hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 005161 170 ----MEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGN 204 (711)
Q Consensus 170 ----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 204 (711)
++++++.+++.....+ -|...|+.+-..+.+.|.
T Consensus 220 ~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 6888888888877654 567777766655555544
No 120
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.84 E-value=2.6e-06 Score=79.25 Aligned_cols=235 Identities=11% Similarity=0.026 Sum_probs=160.1
Q ss_pred HHHhcCChH-HHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCC----------HHHHHHHHHHHHHcCCCchhHHHHHHH
Q 005161 24 ACNKRGCVE-LGAKWFHMMLECDVQPNVATFGMLMGLYKKSWN----------VEEAEFAFNQMRKLGLVCESAYSAMIT 92 (711)
Q Consensus 24 ~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~ 92 (711)
...+.|.+. +|+.++..++..+ +-+..+|+.--.++...|. +++++..++.+...+|.+..+|+.-..
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344667665 7899999999875 4566677765555544443 678999999999999998889988888
Q ss_pred HHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc--
Q 005161 93 IYTRLSL--YEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGK-LEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV-- 167 (711)
Q Consensus 93 ~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 167 (711)
++...+. +++++.+++.+...++. |..+|+...-.+...|. ++++.+.++.+++.. +.|...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 8888874 78999999999988776 88888887777778887 588999999998876 44777887766655443
Q ss_pred ------------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCcc-
Q 005161 168 ------------SNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRA-----------GNYREAKWYYKELKHLGYKPN- 223 (711)
Q Consensus 168 ------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~- 223 (711)
+.++++++.+.......+ -|...|+-+-..+.+. +.++++++.++++.+.. |+
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd~ 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PEN 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--ccc
Confidence 346778888887776553 4666676544444333 34667777777777653 33
Q ss_pred HhhHHHHHH---HHHcCCCHHHHHHHHHHHHHCCCCChhHHHHH
Q 005161 224 ASNLYTLIN---LHAKYEDEEGAVNTLDDMLNMGCQHSSILGTL 264 (711)
Q Consensus 224 ~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 264 (711)
...+..++. .....+..+++...+.++++.+|.....|..+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 223222221 12234555666666777666665544444433
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=2.1e-07 Score=82.80 Aligned_cols=129 Identities=15% Similarity=0.019 Sum_probs=111.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR 96 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (711)
.+..+...+...|++++|...|+.++ .|+...+..+..++.+.|++++|...|+++.+.++....++..+..+|..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 45566778889999999999999884 56888999999999999999999999999999998888999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005161 97 LSLYEKAEEVIRLIREDKVVP---------------NLENWLVMLNAYSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 149 (711)
.|++++|.+.|+......+.. ...++..+..++.+.|++++|...++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999988754331 12677788888889999999999999988864
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.84 E-value=1.3e-07 Score=75.35 Aligned_cols=108 Identities=12% Similarity=0.006 Sum_probs=77.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
..+...-..|.+.|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..|+++.+.+|....+|..++.+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 455566667777777777777777777765 4566777777777777777777777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005161 96 RLSLYEKAEEVIRLIREDKVVPNLENWLVM 125 (711)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (711)
..|++++|++.|++.++.++. +...+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 777777777777777775543 44444333
No 123
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.83 E-value=8.2e-08 Score=90.84 Aligned_cols=173 Identities=11% Similarity=-0.052 Sum_probs=128.1
Q ss_pred cCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc------hhHHHHHHHHHHhcCCHH
Q 005161 28 RGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC------ESAYSAMITIYTRLSLYE 101 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 101 (711)
.++++.|...|..+ ..+|...|++++|...|.++.+..+.. ..+++.+..+|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 46677777776654 456778899999999998877643211 357888899999999999
Q ss_pred HHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHhhccCChH
Q 005161 102 KAEEVIRLIREDK---VVP--NLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSP-----NIVAYNTLMTGYGKVSNME 171 (711)
Q Consensus 102 ~a~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~ 171 (711)
+|+..|++..... -.+ ...++..+...|.. |++++|...+++..+..... ...+++.+..++.+.|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 9999999865431 111 13567778888888 99999999999887642111 1467888899999999999
Q ss_pred HHHHHHHHHHhcC----CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 172 AAQRLFLSIKDVG----LEPD-ETTYRSMIEGWGRAGNYREAKWYYKELK 216 (711)
Q Consensus 172 ~a~~~~~~~~~~~----~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 216 (711)
+|...|++..+.. ..+. ...+..++..+...|++++|...|++..
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999887531 1111 2256666777778899999999999988
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.82 E-value=5.9e-08 Score=79.67 Aligned_cols=100 Identities=9% Similarity=-0.019 Sum_probs=75.1
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+...+..+...+.+.|++++|...|+++...+|.+...|..+..+|...|++++|+..|++....++. +..++..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 34456666677777888888888888888887777777888888888888888888888877776544 55677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 005161 129 YSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~ 149 (711)
|.+.|++++|...|++.++..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 777888888888888777763
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.81 E-value=3.1e-06 Score=79.42 Aligned_cols=161 Identities=9% Similarity=-0.076 Sum_probs=104.5
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCchh------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----hhhHHHH
Q 005161 511 LDIYGKAKLFKRVRKLFSMAKKLGLVDVI------SYNTIIAAYGQNKNLESMSSTVQEMQFDGFSV-S----LEAYNSM 579 (711)
Q Consensus 511 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l 579 (711)
+..+...|++++|...++...+..+.++. .+..+...+...+++++|+..+++..+..... + ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45566777777777777777665442211 23345556666777788888777777642221 1 2257777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----c-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH----CCCCCC-hHhHHH
Q 005161 580 LDAYGKEGQMENFKNVLRRMKE----T-SCTFD-HYTYNIMIDIYGEQGWINEVVGVLTELKE----CGLRPD-LCSYNT 648 (711)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~ 648 (711)
...|...|++++|...++++.+ . +..+. ..++..+...|...|++++|...+++.++ .+..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7778888888888888877763 1 11111 22667777788888888888888887765 222222 567777
Q ss_pred HHHHHhccCC-hHHHHHHHHHHHH
Q 005161 649 LIKAYGIAGM-VEDAVGLVKEMRE 671 (711)
Q Consensus 649 l~~~~~~~g~-~~~A~~~~~~~~~ 671 (711)
+..+|.+.|+ +++|.+.++++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888884 5888888877763
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.80 E-value=6.3e-07 Score=84.18 Aligned_cols=162 Identities=11% Similarity=0.065 Sum_probs=70.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 005161 91 ITIYTRLSLYEKAEEVIRLIREDKVV-PNLE----NWLVMLNAYSQQGKLEEAELVLVSMREAGFS-PN----IVAYNTL 160 (711)
Q Consensus 91 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 160 (711)
+..+...|++++|...++........ |+.. .+..+...+...+++++|...+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34444555555555555554442211 1110 1112333344444555555555555442111 11 1234555
Q ss_pred HHHhhccCChHHHHHHHHHHHh----c-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCcc-HhhHHH
Q 005161 161 MTGYGKVSNMEAAQRLFLSIKD----V-GLEP-DETTYRSMIEGWGRAGNYREAKWYYKELKHL----GYKPN-ASNLYT 229 (711)
Q Consensus 161 ~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~ 229 (711)
..+|...|++++|...|++..+ . +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 5555555555555555555442 0 0011 1223445555555555555555555554432 11111 334555
Q ss_pred HHHHHHcCCC-HHHHHHHHHHHHH
Q 005161 230 LINLHAKYED-EEGAVNTLDDMLN 252 (711)
Q Consensus 230 l~~~~~~~~~-~~~a~~~~~~~~~ 252 (711)
+..++...|+ .++|...++++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5555555553 3555555555543
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=4e-07 Score=80.92 Aligned_cols=124 Identities=9% Similarity=-0.072 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 005161 543 TIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQG 622 (711)
Q Consensus 543 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 622 (711)
.+...+...|++++|+..+++.. +|+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 34444455555555555554432 3344555555555555555555555555555432 334445555555555555
Q ss_pred CHHHHHHHHHHHHHCC--------------CCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 623 WINEVVGVLTELKECG--------------LRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 623 ~~~~A~~~~~~~~~~~--------------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
++++|...|++..+.. ..|+ ...+..+..+|...|++++|...++++.+
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555555555521 0111 14555555666666666666666666555
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.76 E-value=2.9e-07 Score=77.99 Aligned_cols=127 Identities=14% Similarity=-0.017 Sum_probs=63.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR 96 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (711)
.+..+...+...|+++.|...|+..++.. +.+...+..+..++...|++++|...|+++.+.+|....++..++.++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444445555555555555555555543 23444555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Q 005161 97 LSLYEKAEEVIRLIREDKVVPNLENW--LVMLNAYSQQGKLEEAELVLVSM 145 (711)
Q Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~ 145 (711)
.|++++|...+++.....+. +...+ ...+..+.+.|++++|...+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 55555555555555443322 22222 22222244445555555444443
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=5.4e-07 Score=84.66 Aligned_cols=162 Identities=12% Similarity=0.019 Sum_probs=75.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHH
Q 005161 543 TIIAAYGQNKNLESMSSTVQEMQFDGFSVS-----LEAYNSMLDAYGKEGQMENFKNVLRRMKETS---CTFD--HYTYN 612 (711)
Q Consensus 543 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~--~~~~~ 612 (711)
..+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|...+++..+.. ..+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344445555555555555554444321100 0112223344445556666666655554321 0111 22455
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHC-CCCCC-----hHhHHHHHHHHhccCChHHHHHHHHHHHHc----CCCCC-cchH
Q 005161 613 IMIDIYGEQGWINEVVGVLTELKEC-GLRPD-----LCSYNTLIKAYGIAGMVEDAVGLVKEMREN----GIEPD-KITY 681 (711)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~ 681 (711)
.+...|...|++++|...++++.+. ...|+ ..++..++.+|...|++++|+..+++..+. +..+. ..++
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5555566666666666666555420 00111 135555556666666666666666655431 00011 2345
Q ss_pred HHHHHHHHhcchHHHH-HHHHHHH
Q 005161 682 TNMITALQRNDKFLEA-IKWSLWM 704 (711)
Q Consensus 682 ~~l~~~~~~~~~~~~A-~~~~~~m 704 (711)
..++.+|.+.|++++| ..++++.
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5555556666666665 4444443
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.75 E-value=1.2e-07 Score=77.92 Aligned_cols=104 Identities=17% Similarity=0.127 Sum_probs=94.3
Q ss_pred CCCCc-hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHH
Q 005161 10 GAKLN-FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYS 88 (711)
Q Consensus 10 ~~~~~-~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 88 (711)
...|+ ...+..+...+.+.|++++|...|+.+++.. +.+...|..+..+|...|++++|...|+++.+.+|.+..+|.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 33443 5677788889999999999999999999986 567889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 89 AMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
.+..+|...|++++|+..|++.....
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998865
No 131
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.74 E-value=4.9e-08 Score=80.43 Aligned_cols=99 Identities=16% Similarity=0.047 Sum_probs=58.1
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+...+..+...+.+.|++++|...|+.+...+|.+..+|..+..+|...|++++|+..|++....++. +..++..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 33444455555566666666666666666666655566666666666666666666666665554433 44455555556
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 005161 129 YSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~ 148 (711)
|...|++++|...|+..++.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666665554
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.74 E-value=2.5e-07 Score=74.84 Aligned_cols=118 Identities=11% Similarity=0.024 Sum_probs=73.3
Q ss_pred CCchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHH
Q 005161 12 KLNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMI 91 (711)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 91 (711)
+.+...+..+...+.+.|++++|...|+.+++.. +.+...+..+..++...|++++|...|+++.+.++....++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3445666666666677777777777777766653 335566666666666677777777777777666666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005161 92 TIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQ 131 (711)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (711)
.++...|++++|...+++.....+. +...+..+...+.+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 6666777777777666666554322 23344444444443
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=3.7e-08 Score=91.64 Aligned_cols=194 Identities=8% Similarity=-0.105 Sum_probs=113.9
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
+...+..+...+...|++++|...|+.+++.. +.+...|..+..+|.+.|++++|...++++.+.+|....++..++.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44566677777888888888888888888764 34667777777788888888888888888888877777788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHH
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAA 173 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 173 (711)
|...|++++|+..|+.....++. +...+...+....+. ..+ ..+........+.+......+...+ .|++++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 88888888888888776653311 000111111111111 111 1112222223344444444443322 5677777
Q ss_pred HHHHHHHHhcCCCCChh-hHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 005161 174 QRLFLSIKDVGLEPDET-TYRSMIEGWGRA-GNYREAKWYYKELKH 217 (711)
Q Consensus 174 ~~~~~~~~~~~~~~~~~-~~~~li~~~~~~-g~~~~A~~~~~~~~~ 217 (711)
.+.++...+. .|+.. ....+...+.+. +.+++|..+|.++.+
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777666653 23322 222232223333 456667777766654
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.73 E-value=4.1e-07 Score=77.04 Aligned_cols=126 Identities=15% Similarity=-0.021 Sum_probs=68.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQ 131 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (711)
.+..+...+...|+++.|...|+++.+.++....++..++.++...|++++|...+++.....+. +..++..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 34445555556666666666666666666655566666666666666666666666665554432 44455555555556
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHhhccCChHHHHHHHHH
Q 005161 132 QGKLEEAELVLVSMREAGFSPNIVAYNTLM--TGYGKVSNMEAAQRLFLS 179 (711)
Q Consensus 132 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~ 179 (711)
.|++++|...+++..+.. +.+...+..+. ..+.+.|++++|...++.
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 666666666666655542 12333332222 223444555555555444
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.72 E-value=4.4e-07 Score=72.35 Aligned_cols=98 Identities=20% Similarity=0.187 Sum_probs=53.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
.++..+...+...|++++|.+.|+.+++.. +.+...+..+..++.+.|++++|...|+.+.+.++....++..+..+|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 445555555555566666666655555543 2344455555555555555555555555555555544555555555555
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 005161 96 RLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~ 114 (711)
..|++++|...++++....
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 5555555555555554433
No 136
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.72 E-value=5.8e-06 Score=76.92 Aligned_cols=194 Identities=5% Similarity=-0.061 Sum_probs=141.0
Q ss_pred HccCCHH-HHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 61 KKSWNVE-EAEFAFNQMRKLGLVCESAYSAMITIYTRLSL----------YEKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 61 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
.+.|.++ +|+.+++.+...+|....+|+.-..++...+. +++++.+++.+...+++ +..+|+...-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3556655 79999999999999998898877666665554 68899999999887776 788888887778
Q ss_pred HhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC-hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc----
Q 005161 130 SQQG--KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSN-MEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRA---- 202 (711)
Q Consensus 130 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 202 (711)
.+.+ .++++...++.+.+.. +.|-.+|+.-.-++...|. ++++++.++.+.+..+ .|..+|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcc
Confidence 7777 4899999999999876 4478888877777777787 5899999999988764 5677777665555444
Q ss_pred ----------CCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcC-----------CCHHHHHHHHHHHHHCCCCCh
Q 005161 203 ----------GNYREAKWYYKELKHLGYKPNASNLYTLINLHAKY-----------EDEEGAVNTLDDMLNMGCQHS 258 (711)
Q Consensus 203 ----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~ 258 (711)
+.++++++.+.+.....+ -|...|+.+-..+... +-++++++.++++.+..|++.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 346778888888777632 2555665444444433 235566666666666655543
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.72 E-value=6.5e-08 Score=87.06 Aligned_cols=189 Identities=8% Similarity=-0.052 Sum_probs=145.7
Q ss_pred hcCChHHHHHHHHHHhHcCCCCCHhhHHHH-------HHHHHccCCHHHHHHHHHHHHHcCCCc----------------
Q 005161 27 KRGCVELGAKWFHMMLECDVQPNVATFGML-------MGLYKKSWNVEEAEFAFNQMRKLGLVC---------------- 83 (711)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------- 83 (711)
+.++...|.+.|..+.+.. +.....|..+ ..++.+.++..+++..+.+.....|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 6899999999999999986 5677888888 566666666677777777666633221
Q ss_pred -----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHH
Q 005161 84 -----ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPN--IVA 156 (711)
Q Consensus 84 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 156 (711)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. +|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 2345667889999999999999999887765 433355566678889999999999998766532 121 236
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 005161 157 YNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPD--ETTYRSMIEGWGRAGNYREAKWYYKELKHLG 219 (711)
Q Consensus 157 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 219 (711)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77888999999999999999999985332243 3456677788899999999999999999863
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.72 E-value=2.8e-07 Score=74.23 Aligned_cols=117 Identities=15% Similarity=-0.018 Sum_probs=57.5
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...+..+...+...|+++.|...|+.+++.. +.+...+..+..++...|++++|...+..+.+..|....++..++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3444444455555555555555555555442 234444445555555555555555555555555544444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 95 TRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
...|++++|...++......+. +...+..+...+.+.|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 5555555555555554443322 3334444444444333
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.71 E-value=1e-07 Score=81.87 Aligned_cols=123 Identities=12% Similarity=0.108 Sum_probs=84.9
Q ss_pred HHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH-HHhcCCH--H
Q 005161 25 CNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI-YTRLSLY--E 101 (711)
Q Consensus 25 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 101 (711)
+...|++++|...++..++.. +.+...+..+..+|...|++++|...|+++.+.+|.+...+..++.+ +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 345677777777777777664 45666777777777777788888888777777777766777777777 6677777 7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005161 102 KAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 102 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 149 (711)
+|...++.+...++. +...+..+...+...|++++|...++.+.+..
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777777777765543 45666677777777777777777777777653
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.70 E-value=3e-06 Score=79.51 Aligned_cols=166 Identities=10% Similarity=-0.047 Sum_probs=121.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCch------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC--hh
Q 005161 506 TLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDV------ISYNTIIAAYGQNKNLESMSSTVQEMQFDGFS---VS--LE 574 (711)
Q Consensus 506 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 574 (711)
.+...+..+...|++++|.+.+....+..+... ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667788888888888887776654322 22344566677888999999999888754211 11 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC-h
Q 005161 575 AYNSMLDAYGKEGQMENFKNVLRRMKET--SCTFD----HYTYNIMIDIYGEQGWINEVVGVLTELKEC----GLRPD-L 643 (711)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~ 643 (711)
+++.+...|...|++++|...++++.+. ..+.+ ..++..+...|...|++++|...+++.++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999988731 11111 257888999999999999999999998762 11112 5
Q ss_pred HhHHHHHHHHhccCChHHH-HHHHHHHHH
Q 005161 644 CSYNTLIKAYGIAGMVEDA-VGLVKEMRE 671 (711)
Q Consensus 644 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 671 (711)
.+|..+..+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6789999999999999999 777888764
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.69 E-value=1.1e-07 Score=78.30 Aligned_cols=112 Identities=7% Similarity=-0.053 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005161 70 EFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 149 (711)
...|+++...+|.....+..+...+...|++++|+..|+.....++. +...|..+..++...|++++|...+++.++..
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34566666666666677888888888888888888888888776654 66777788888888888888888888888764
Q ss_pred CCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhc
Q 005161 150 FSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDV 183 (711)
Q Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 183 (711)
+.++..+..+..++...|++++|...|++..+.
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 346677777888888888888888888887664
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.67 E-value=3.4e-07 Score=73.76 Aligned_cols=119 Identities=16% Similarity=-0.008 Sum_probs=81.0
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+...+..+...+...|+++.|...|+++.+..+....++..++.++...|++++|...++......+. +...+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 44556666677777777777777777777777766677777777777777777777777777665433 45566666777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCC
Q 005161 129 YSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSN 169 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (711)
+...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 777777777777777776653 2355556666666555554
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.67 E-value=4.2e-07 Score=73.49 Aligned_cols=117 Identities=11% Similarity=-0.072 Sum_probs=73.2
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN 127 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (711)
.+...+..+...+...|++++|...|+++.+.++....++..++.+|...|++++|+..+++.....+. +...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 445555666666667777777777777777766666666777777777777777777777766654433 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 005161 128 AYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK 166 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (711)
.+.+.|++++|.+.+++..+.. +.+...+..+..++.+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 6666677777777666666543 2233444444444443
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.67 E-value=1.7e-07 Score=80.35 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=101.2
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 005161 60 YKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA-YSQQGKL--E 136 (711)
Q Consensus 60 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 136 (711)
+...|++++|...|+...+.+|....+|..++.+|...|++++|...|++....++. +...+..+... +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 345788999999999999999988899999999999999999999999998876544 56777778877 7788998 9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcC
Q 005161 137 EAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVG 184 (711)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 184 (711)
+|...++.+.+.. +.+...+..+..++...|++++|...|++..+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999998875 3467788888899999999999999999988754
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=7.4e-07 Score=71.00 Aligned_cols=113 Identities=23% Similarity=0.180 Sum_probs=73.2
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
...+..+...+...|+++.|...|+++.+..+....++..++..+...|++++|...++++....+. +..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence 4556666667777777777777777777766666666777777777777777777777776654433 455666666667
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 005161 130 SQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGY 164 (711)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (711)
...|++++|...++++.+.. +.+...+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 77777777777777766653 22444444444433
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=1.3e-07 Score=87.82 Aligned_cols=95 Identities=9% Similarity=-0.031 Sum_probs=48.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 005161 506 TLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGK 585 (711)
Q Consensus 506 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 585 (711)
.+..+...+...|++++|...|+.+....+.+...+..+..+|...|++++|+..+++..+.. +.+...+..+..++..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334444444555555555555555555554455555555555555555555555555554432 3334445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 005161 586 EGQMENFKNVLRRMKE 601 (711)
Q Consensus 586 ~g~~~~A~~~~~~~~~ 601 (711)
.|++++|...+++..+
T Consensus 85 ~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 85 MESYDEAIANLQRAYS 100 (281)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555443
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.65 E-value=6.8e-07 Score=71.39 Aligned_cols=98 Identities=13% Similarity=-0.008 Sum_probs=65.8
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...|......+.+.|++++|...|+..++.. +.+...|..+..++.+.|++++|...|+++.+.+|....+|..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3445556666667777777777777776654 445666666666677777777777777777777666666677777777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 005161 95 TRLSLYEKAEEVIRLIRED 113 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~ 113 (711)
...|++++|...|++....
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777666553
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.64 E-value=5.8e-07 Score=85.96 Aligned_cols=150 Identities=13% Similarity=-0.003 Sum_probs=98.6
Q ss_pred CChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---------------hhHHHHHHHH
Q 005161 29 GCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---------------ESAYSAMITI 93 (711)
Q Consensus 29 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~ 93 (711)
+++++|...|+...+.. +.+...+..+...|.+.|++++|...|+++.+..+.. ..+|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444443321 2245566666677777777777777777777766665 3677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHH
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAA 173 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 173 (711)
|.+.|++++|+..+++++..++. +..++..+..+|...|++++|...|++.++.. +.+...+..+..++.+.|+++++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766544 56677777777777777777777777777764 33566677777777777777776
Q ss_pred -HHHHHHHH
Q 005161 174 -QRLFLSIK 181 (711)
Q Consensus 174 -~~~~~~~~ 181 (711)
...|+.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 34555543
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=2.9e-07 Score=81.12 Aligned_cols=83 Identities=12% Similarity=0.023 Sum_probs=36.1
Q ss_pred hcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCchhHHHHHHHHHHhcCCH
Q 005161 27 KRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKL------GLVCESAYSAMITIYTRLSLY 100 (711)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~ 100 (711)
..|++++|.+.++.+.. ........+..+..++...|++++|...|++..+. .+....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 44555555553333322 11223444444555555555555555555554431 111123444444555555555
Q ss_pred HHHHHHHHHH
Q 005161 101 EKAEEVIRLI 110 (711)
Q Consensus 101 ~~a~~~~~~~ 110 (711)
++|...+++.
T Consensus 83 ~~A~~~~~~a 92 (203)
T 3gw4_A 83 DAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=3.2e-07 Score=80.79 Aligned_cols=157 Identities=10% Similarity=0.026 Sum_probs=96.1
Q ss_pred HccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCH
Q 005161 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED----KV-VPNLENWLVMLNAYSQQGKL 135 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~ 135 (711)
...|++++|.+.++.+.........++..+...+...|++++|...+++.... +. .....++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45688888888555554422233567888888888888888888888876651 11 11234566677777788888
Q ss_pred HHHHHHHHHHHHc----CCC--CCHHHHHHHHHHhhccCChHHHHHHHHHHHhcC---CCCC--hhhHHHHHHHHHhcCC
Q 005161 136 EEAELVLVSMREA----GFS--PNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVG---LEPD--ETTYRSMIEGWGRAGN 204 (711)
Q Consensus 136 ~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~li~~~~~~g~ 204 (711)
++|...+++..+. +-. .....+..+...+...|++++|...+++..+.. ..+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888877776653 101 123446666777777778887777777655321 0111 2224556666667777
Q ss_pred HHHHHHHHHHHHh
Q 005161 205 YREAKWYYKELKH 217 (711)
Q Consensus 205 ~~~A~~~~~~~~~ 217 (711)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666544
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.60 E-value=2.3e-07 Score=75.98 Aligned_cols=97 Identities=16% Similarity=0.028 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYS 130 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (711)
..+..+...+.+.|++++|...|+.+...+|.+...|..+..+|...|++++|+..|+.....++. +...+..+..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 344445555556666666666666666666666666666666666666666666666666554433 4445555666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 005161 131 QQGKLEEAELVLVSMREA 148 (711)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~ 148 (711)
..|++++|...++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666554
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.60 E-value=2.1e-06 Score=67.48 Aligned_cols=99 Identities=12% Similarity=0.037 Sum_probs=59.3
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...+..+...+...|++++|...|+.+++.. +.+...+..+..++...|++++|...++++.+.+|.....+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555556666666666666666666543 334555555566666666666666666666666655555666666666
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 005161 95 TRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~~ 114 (711)
...|++++|...++.....+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 66666666666666655544
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.59 E-value=6.6e-07 Score=73.23 Aligned_cols=100 Identities=13% Similarity=-0.024 Sum_probs=90.3
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
+...+..+...+.+.|++++|...|+.+++.+ +.+...|..+..+|.+.|++++|...|+++...+|.+..++..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34566667788999999999999999999876 56788888999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 005161 94 YTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~ 114 (711)
|...|++++|...|+......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999987754
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.57 E-value=1.1e-06 Score=84.04 Aligned_cols=155 Identities=14% Similarity=-0.003 Sum_probs=127.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHH
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPN--------------LENWLVMLN 127 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~ 127 (711)
..++++.|...|+...+..+....++..+...|.+.|++++|+..|++.+...+... ..++..+..
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 345666677777666666666678999999999999999999999999888664422 478889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 005161 128 AYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYRE 207 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (711)
+|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+..+ .+...+..+...+.+.|++++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875 45788999999999999999999999999988653 456778888889999999998
Q ss_pred H-HHHHHHHHhc
Q 005161 208 A-KWYYKELKHL 218 (711)
Q Consensus 208 A-~~~~~~~~~~ 218 (711)
| ...|+.|...
T Consensus 283 a~~~~~~~~~~~ 294 (336)
T 1p5q_A 283 REKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 8 5577777543
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.56 E-value=9.7e-07 Score=70.48 Aligned_cols=98 Identities=14% Similarity=0.014 Sum_probs=77.1
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
...+..+...+.+.|++++|...|+++.+.+|....+|..+..+|.+.|++++|+..+++....++. +..++..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 3456666777778888888888888888888877788888888888888888888888887776544 566777778888
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 005161 130 SQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~ 148 (711)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8888888888888887765
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=3.2e-06 Score=66.37 Aligned_cols=110 Identities=17% Similarity=0.014 Sum_probs=77.7
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
...+..+...+...|++++|...|+.+....|.+...+..++.++...|++++|...+++.....+. +...+..+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 4456666777777888888888888888777777777777788888888888888888777765543 556677777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 130 SQQGKLEEAELVLVSMREAGFSPNIVAYNTLM 161 (711)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (711)
...|++++|...++...+.. +.+...+..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 77778888877777777653 22444444433
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.52 E-value=1.8e-06 Score=68.81 Aligned_cols=97 Identities=13% Similarity=0.037 Sum_probs=53.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHHHHH
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV--PN----LENWLVM 125 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 125 (711)
.+..+...+.+.|++++|+..|+++.+.+|....+|..+..+|...|++++|++.+++.+..++. +. ..++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34445555666666666666666666666655566666666666666666666666655442211 00 1234445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 005161 126 LNAYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 126 ~~~~~~~~~~~~a~~~~~~~~~~ 148 (711)
..++...|++++|.+.|++.++.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555556666666666655543
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.52 E-value=1.4e-06 Score=67.75 Aligned_cols=97 Identities=11% Similarity=-0.040 Sum_probs=48.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--chhHHHHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLV--CESAYSAMITI 93 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 93 (711)
..+..+...+...|++++|...|+.+++.. +.+...+..+..++...|++++|...|+++.+..+. ...++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344444445555555555555555555443 233444444455555555555555555555555544 44455555555
Q ss_pred HHhc-CCHHHHHHHHHHHHhC
Q 005161 94 YTRL-SLYEKAEEVIRLIRED 113 (711)
Q Consensus 94 ~~~~-~~~~~a~~~~~~~~~~ 113 (711)
+... |++++|.+.++.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555554443
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=1.1e-06 Score=70.10 Aligned_cols=101 Identities=16% Similarity=0.021 Sum_probs=64.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC--------hHhH
Q 005161 575 AYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPD--------LCSY 646 (711)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~~ 646 (711)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++.++. .|+ ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHHHHH
Confidence 34456666667777777777777766642 334556667777777777777777777776652 121 1356
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCcch
Q 005161 647 NTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKIT 680 (711)
Q Consensus 647 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 680 (711)
..+..++...|++++|++.|++.++ ..||+.+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~ 118 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPEL 118 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHH
Confidence 6667777777777777777777766 4555443
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.51 E-value=9.2e-07 Score=69.71 Aligned_cols=94 Identities=14% Similarity=-0.093 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 18 FNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL 97 (711)
Q Consensus 18 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (711)
+..+...+.+.|++++|...|+.+++.. +.+...|..+..++...|++++|+..|+++.+.+|....++..+..+|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3334445555555555555555555543 334455555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 005161 98 SLYEKAEEVIRLIRE 112 (711)
Q Consensus 98 ~~~~~a~~~~~~~~~ 112 (711)
|++++|+..+++.+.
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.50 E-value=1.8e-06 Score=72.80 Aligned_cols=100 Identities=14% Similarity=0.008 Sum_probs=71.7
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
+...+..+...+.+.|++++|...|+.+++.. +.+...|..+..+|.+.|++++|+..|+++.+.+|....+|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45566666677777777777777777777764 34566677777777777777777777777777777767777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 005161 94 YTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~ 114 (711)
|...|++++|...|++.+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 777777777777777766544
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=1.3e-06 Score=68.87 Aligned_cols=96 Identities=13% Similarity=-0.080 Sum_probs=80.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQ 131 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 131 (711)
.+..+...+.+.|++++|...|+++.+.+|....+|..+..++...|++++|+..|++....++. +...+..+..++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 44556677888899999999999999999888889999999999999999999999988887655 66778888888888
Q ss_pred cCCHHHHHHHHHHHHHc
Q 005161 132 QGKLEEAELVLVSMREA 148 (711)
Q Consensus 132 ~~~~~~a~~~~~~~~~~ 148 (711)
.|++++|...+++.++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999888875
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.46 E-value=2.4e-06 Score=74.69 Aligned_cols=131 Identities=17% Similarity=0.070 Sum_probs=80.7
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE----------------SAYSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
....+..+...+.+.|++++|...|+++.+..+... .++..+..+|...|++++|+..++....
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345555666666677777777777777766555443 5667777777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHH-HHHHHHH
Q 005161 113 DKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQ-RLFLSIK 181 (711)
Q Consensus 113 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~ 181 (711)
..+. +..++..+..++...|++++|...|++..+.. +.+...+..+..++...++.+++. ..|..+.
T Consensus 117 ~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 117 IDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred hCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5433 55666677777777777777777777777653 235566666666666666555555 4444443
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.44 E-value=3.4e-06 Score=71.06 Aligned_cols=100 Identities=14% Similarity=-0.039 Sum_probs=76.4
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
+...+..+...+.+.|++++|...|+++.+.+|....+|..+..+|...|++++|+..|++.+..++. +...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 45566667777778888888888888888888777777888888888888888888888887776544 56677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 005161 129 YSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~ 149 (711)
+...|++++|...|++.++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 778888888888888777653
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.43 E-value=4.6e-06 Score=67.64 Aligned_cols=96 Identities=10% Similarity=-0.102 Sum_probs=45.9
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
...+..+...+...|++++|...|+.+++.. +.+...+..+..++...|++++|...|+.+.+.+|....+|..+..+|
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3444444444455555555555555544443 223444444444444455555555555555444444444444444555
Q ss_pred HhcCCHHHHHHHHHHHH
Q 005161 95 TRLSLYEKAEEVIRLIR 111 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~ 111 (711)
...|++++|...|+...
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 55555555544444443
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.42 E-value=5.4e-06 Score=67.24 Aligned_cols=100 Identities=12% Similarity=0.020 Sum_probs=69.0
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN 127 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (711)
.+...+..+...+...|++++|...|..+.+.+|....+|..+..++...|++++|...++.....++. +...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 455666666777777777777777777777777766667777777777777777777777776665543 4556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 005161 128 AYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~ 148 (711)
++...|++++|...+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 677777777777777666654
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.42 E-value=3.6e-06 Score=65.34 Aligned_cols=99 Identities=17% Similarity=0.065 Sum_probs=55.5
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV-PNLENWLVMLNA 128 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 128 (711)
...+..+...+...|++++|...|+++.+.++....++..+..++...|++++|...+++..+..+. .+...+..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555555566666666666666666665555555666666666666666666666655554311 024445555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHc
Q 005161 129 YSQQ-GKLEEAELVLVSMREA 148 (711)
Q Consensus 129 ~~~~-~~~~~a~~~~~~~~~~ 148 (711)
+.+. |++++|.+.+....+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555554
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=9.3e-06 Score=66.85 Aligned_cols=97 Identities=18% Similarity=0.038 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN 127 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (711)
..+..+...+...|++++|...|+++.+..+.+ ..+|..+..+|...|++++|+..++......+. +...+..+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 107 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHHHH
Confidence 333444444444444444444444444444433 334444444444444444444444444433222 2334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 005161 128 AYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~ 148 (711)
++...|++++|...+++..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHc
Confidence 444444444444444444443
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=9.5e-06 Score=66.80 Aligned_cols=111 Identities=10% Similarity=-0.140 Sum_probs=94.8
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHH
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPN----VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYS 88 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 88 (711)
.+...+..+...+...|++++|.+.|+..++.. |+ ...+..+..+|...|++++|...|+.+.+.++....++.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 356778888889999999999999999999864 55 677888889999999999999999999999988888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005161 89 AMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVML 126 (711)
Q Consensus 89 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 126 (711)
.+..+|...|++++|...|++.....+. +...+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence 9999999999999999999999886543 444444333
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.39 E-value=4.3e-06 Score=73.07 Aligned_cols=156 Identities=7% Similarity=-0.039 Sum_probs=95.4
Q ss_pred HccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHH
Q 005161 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPN---------------LENWLVM 125 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l 125 (711)
...|+++.|.+.|+.-....+.....+..+...+...|++++|+..|++.....+... ..++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 3455666666666544443333456777778888888888888888888776433211 2567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 005161 126 LNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNY 205 (711)
Q Consensus 126 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 205 (711)
..++.+.|++++|...++..++.. +.+...+..+..++...|++++|...|++..+..+ .+...+..+...+...++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHH
Confidence 777888888888888888877764 34667777777888888888888888888776542 3455666666666666666
Q ss_pred HHHH-HHHHHHHhc
Q 005161 206 REAK-WYYKELKHL 218 (711)
Q Consensus 206 ~~A~-~~~~~~~~~ 218 (711)
.++. ..|..+...
T Consensus 173 ~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 173 RKKDKLTFGGMFDK 186 (198)
T ss_dssp HC------------
T ss_pred HHHHHHHHHHHhcc
Confidence 6665 455555443
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=3e-06 Score=68.02 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-------hhHHHH
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC-------ESAYSA 89 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~ 89 (711)
.+..+...+...|+++.|...|+.+++.. +.+...+..+..++...|++++|...|+.+.+..+.. ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444445555555555555555555443 2334444444455555555555555555544443322 334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 005161 90 MITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 90 l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
++.+|...|++++|.+.|+.+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44444444555555544444444
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=2.4e-06 Score=68.63 Aligned_cols=110 Identities=12% Similarity=0.026 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHHHH
Q 005161 51 ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV--PN----LENWLV 124 (711)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 124 (711)
..+..+...+...|+++.|...|.++.+.++....++..++.+|...|++++|...++......+. ++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 456667777778888888888888888877777777888888888888888888888877654321 11 456666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005161 125 MLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMT 162 (711)
Q Consensus 125 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 162 (711)
+...+...|++++|.+.++...+.. |+......+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 7777777777777777777777653 35544444443
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.35 E-value=1.6e-05 Score=63.52 Aligned_cols=92 Identities=14% Similarity=0.082 Sum_probs=47.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhHcCCCCCH---hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHH
Q 005161 21 LIYACNKRGCVELGAKWFHMMLECDVQPNV---ATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---ESAYSAMITIY 94 (711)
Q Consensus 21 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~ 94 (711)
+...+...|++++|...|+.+++... .+. ..+..+..++.+.|++++|...|+.+.+..|.. ..++..++.++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 33445555555555555555555431 112 244444555555555555555555555555544 34455555555
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 005161 95 TRLSLYEKAEEVIRLIRED 113 (711)
Q Consensus 95 ~~~~~~~~a~~~~~~~~~~ 113 (711)
...|++++|...|+.+...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.33 E-value=1.8e-05 Score=63.29 Aligned_cols=96 Identities=16% Similarity=-0.027 Sum_probs=72.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 005161 54 GMLMGLYKKSWNVEEAEFAFNQMRKLGLVCE---SAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPN--LENWLVMLNA 128 (711)
Q Consensus 54 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 128 (711)
..+...+...|++++|...|+.+.+..|.+. .++..++.++...|++++|...|+.+....+... ..++..+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3455667778888888888888888777665 6778888888888888888888888777554311 4566777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 005161 129 YSQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~ 149 (711)
+...|++++|...++.+.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888888887763
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.31 E-value=1.7e-06 Score=67.85 Aligned_cols=88 Identities=11% Similarity=0.048 Sum_probs=65.8
Q ss_pred hcCChHHHHHHHHHHhHcC--CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHH
Q 005161 27 KRGCVELGAKWFHMMLECD--VQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAE 104 (711)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 104 (711)
..|++++|...|+++++.+ -+.+...+..+..+|...|++++|...|+++.+.+|....++..+..+|...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3577888888888888764 23445667777788888888888888888888888887888888888888888888888
Q ss_pred HHHHHHHhCC
Q 005161 105 EVIRLIREDK 114 (711)
Q Consensus 105 ~~~~~~~~~~ 114 (711)
..+++.....
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 8888876654
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.26 E-value=1.6e-05 Score=64.18 Aligned_cols=97 Identities=11% Similarity=-0.072 Sum_probs=65.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCC------CHh-----hHHHHHHHHHccCCHHHHHHHHHHHHHc-----
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQP------NVA-----TFGMLMGLYKKSWNVEEAEFAFNQMRKL----- 79 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 79 (711)
..+...-..+...|++++|+..|+.+++..+.. +.. .|..+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344555666777888888888888887754220 222 6666777777777777777777777776
Q ss_pred --CCCchhHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 80 --GLVCESAY----SAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 80 --~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
+|....+| +....++...|++++|+..|++.++
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666 7777777777777777777776654
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=4.1e-05 Score=76.62 Aligned_cols=196 Identities=7% Similarity=-0.076 Sum_probs=134.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCcc----------------HHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--Cc
Q 005161 476 INCCARALPIDELSRVFDEMLQHGFTPN----------------IITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL--VD 537 (711)
Q Consensus 476 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 537 (711)
...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+.+... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4566788999999999999887532211 12356778888899999999998887665332 22
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-
Q 005161 538 V----ISYNTIIAAYGQNKNLESMSSTVQEMQFD----GFSV-SLEAYNSMLDAYGKEGQMENFKNVLRRMKET--SCT- 605 (711)
Q Consensus 538 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~- 605 (711)
. .+.+.+...+...|+++.+..++...... +..+ -..++..+...|...|++++|..+++++... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 23334444555678888888888876543 2222 2446677888888889999999988887642 111
Q ss_pred -C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC--hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 606 -F-DHYTYNIMIDIYGEQGWINEVVGVLTELKEC----GLRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 606 -~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
+ ....+..++..|...|++++|..++++.... +.+|. ...+..+...+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2346777888888899999999988887651 11111 24566667778888899999888888875
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.25 E-value=1.1e-05 Score=80.88 Aligned_cols=123 Identities=15% Similarity=0.036 Sum_probs=69.3
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc---------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC---------------ESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
...+..+...|.+.|++++|...|+++.+..+.. ..+|..+..+|.+.|++++|+..+++++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3444455555555555555555555555544443 3556666666666666666666666665554
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHH
Q 005161 115 VVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQ 174 (711)
Q Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 174 (711)
+. +..++..+..+|...|++++|...|+++++.. +.+...+..+..++.+.++++++.
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33 45556666666666666666666666666553 224455555666666666555554
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=7e-05 Score=74.92 Aligned_cols=195 Identities=11% Similarity=-0.050 Sum_probs=111.7
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCch-----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH
Q 005161 58 GLYKKSWNVEEAEFAFNQMRKLGLVCE-----------------SAYSAMITIYTRLSLYEKAEEVIRLIREDKVV-PNL 119 (711)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 119 (711)
+.+.+.|++++|++.|..+.+..+... .++..++..|...|++++|.+.+..+...... ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 344556666666666666665544321 23566777777778887777777765542111 111
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCC----
Q 005161 120 ----ENWLVMLNAYSQQGKLEEAELVLVSMREA----GFSP-NIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLE---- 186 (711)
Q Consensus 120 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---- 186 (711)
.+.+.+...+...|+++.|..+++..... +..+ -..++..++..+...|++++|..+++++...-..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 11222223333457777777777666532 1111 2345667777777778888888777766532111
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCcc--HhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005161 187 P-DETTYRSMIEGWGRAGNYREAKWYYKELKHL----GYKPN--ASNLYTLINLHAKYEDEEGAVNTLDDMLN 252 (711)
Q Consensus 187 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 252 (711)
+ ....+..++..|...|++++|..++++.... +..+. ...+..+...+...++++.|...+.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2335667777777888888888887776542 11111 23344555566677777777766665543
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.23 E-value=1.4e-05 Score=67.06 Aligned_cols=100 Identities=13% Similarity=0.036 Sum_probs=76.8
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHc--------C---------CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLEC--------D---------VQPNVATFGMLMGLYKKSWNVEEAEFAFNQMR 77 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 77 (711)
...+...-..+.+.|++++|...|...++. . .+.+...|..+..+|.+.|++++|...++.+.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456677778888999999999999988875 1 02233566677777788888888888888888
Q ss_pred HcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 78 KLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
+.+|....+|..++.+|...|++++|...|+..+..+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 8887777788888888888888888888888777654
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.21 E-value=3.5e-06 Score=84.67 Aligned_cols=118 Identities=14% Similarity=-0.003 Sum_probs=60.4
Q ss_pred HHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHH
Q 005161 24 ACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKA 103 (711)
Q Consensus 24 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 103 (711)
.+.+.|++++|.+.|+++++.. +.+...|..+..+|.+.|++++|+..++++.+.+|....+|..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445556666666666665543 334555555555555666666666666666665555555555566666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 005161 104 EEVIRLIREDKVVPNLENWLVMLNA--YSQQGKLEEAELVLV 143 (711)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 143 (711)
++.|++..+..+. +...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666555544322 22233333322 445555555555554
No 182
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.21 E-value=7.8e-05 Score=76.29 Aligned_cols=137 Identities=10% Similarity=0.014 Sum_probs=91.9
Q ss_pred hcCCh-HHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCC----------HHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 27 KRGCV-ELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWN----------VEEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 27 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
+.|.+ ++|++.++.+++.. +-+...|+..-.++...|+ ++++++.++.+.+.+|.+..+|+.-..++.
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34433 46677777777765 4456666666666655555 777777777777777777777777777777
Q ss_pred hcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 005161 96 RLS--LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG-KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGK 166 (711)
Q Consensus 96 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (711)
+.+ +++++++.++++.+.++. +..+|+...-.+.+.| .++++.+.++++++.. +.+...|+....++.+
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred HcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHh
Confidence 777 557777777777776665 6667776666666666 6777777777777664 3366666665555443
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.19 E-value=1.4e-05 Score=66.94 Aligned_cols=95 Identities=13% Similarity=0.041 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC-hHh
Q 005161 576 YNSMLDAYGKEGQMENFKNVLRRMKET----SCTF-DHYTYNIMIDIYGEQGWINEVVGVLTELKEC----GLRPD-LCS 645 (711)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~ 645 (711)
+..+...+...|++++|...+++..+. +.++ ....+..+...+...|++++|...+++..+. +..+. ..+
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 334444444455555555555444321 0000 0123344444444555555555555444431 10011 223
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHH
Q 005161 646 YNTLIKAYGIAGMVEDAVGLVKEMR 670 (711)
Q Consensus 646 ~~~l~~~~~~~g~~~~A~~~~~~~~ 670 (711)
+..+..+|...|++++|.+.+++..
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444444444455555544444443
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.18 E-value=1.3e-05 Score=77.37 Aligned_cols=89 Identities=11% Similarity=0.009 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005161 84 ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTG 163 (711)
Q Consensus 84 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (711)
..+|..+..+|.+.|++++|+..+++.++.++. +..++..+..+|...|++++|...+++..+.. +.+...+..+..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345555555555555555555555555554432 44455555555555555555555555555542 2244444445555
Q ss_pred hhccCChHHHH
Q 005161 164 YGKVSNMEAAQ 174 (711)
Q Consensus 164 ~~~~~~~~~a~ 174 (711)
+.+.++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 54444444443
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.18 E-value=5.2e-06 Score=83.46 Aligned_cols=120 Identities=16% Similarity=-0.033 Sum_probs=79.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005161 57 MGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLE 136 (711)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 136 (711)
...+.+.|++++|.+.|+++.+.+|....+|..+..+|.+.|++++|++.+++..+.++. +..++..+..+|.+.|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 344556778888888888888777777777777788888888888888888777776544 5566777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--hhccCChHHHHHHHH
Q 005161 137 EAELVLVSMREAGFSPNIVAYNTLMTG--YGKVSNMEAAQRLFL 178 (711)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 178 (711)
+|.+.+++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777776532 233444444444 555666666666665
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.14 E-value=3.4e-05 Score=62.28 Aligned_cols=95 Identities=11% Similarity=-0.038 Sum_probs=62.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-------chh-----HHHHHHHHHHhcCCHHHHHHHHHHHHhC------
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLV-------CES-----AYSAMITIYTRLSLYEKAEEVIRLIRED------ 113 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 113 (711)
.+......+.+.|++++|+..|+++.+.+|. ... +|..+..++.+.|++++|+..+++.+..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 4455666777888888888888888887776 222 6777777777777777777777766654
Q ss_pred -CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 114 -KVVPNLENW----LVMLNAYSQQGKLEEAELVLVSMRE 147 (711)
Q Consensus 114 -~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 147 (711)
++. +...| .....++...|++++|+..|++.++
T Consensus 93 ~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 322 33445 5555666666666666666666554
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.14 E-value=2.2e-05 Score=78.54 Aligned_cols=154 Identities=14% Similarity=0.024 Sum_probs=121.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHH
Q 005161 62 KSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPN--------------LENWLVMLN 127 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~ 127 (711)
..++++.|...|+...+..+.....|..+...|.+.|++++|+..|++.+...+... ..+|..+..
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 455666777777666666666678899999999999999999999999887543322 578888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 005161 128 AYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYRE 207 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (711)
+|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+..+ .+...+..+...+.+.+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875 44788899999999999999999999999988643 355678888888888888887
Q ss_pred HH-HHHHHHHh
Q 005161 208 AK-WYYKELKH 217 (711)
Q Consensus 208 A~-~~~~~~~~ 217 (711)
+. ..+..|..
T Consensus 404 a~~~~~~~~f~ 414 (457)
T 1kt0_A 404 RDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 76 45555543
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.13 E-value=3.4e-05 Score=64.63 Aligned_cols=98 Identities=18% Similarity=0.054 Sum_probs=70.6
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHc------------------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKL------------------GLVCESAYSAMITIYTRLSLYEKAEEVIRLIR 111 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (711)
...+......+.+.|++++|...|..+.+. ++....+|..+..+|.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777888889999999999888776 33334567777777777777777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005161 112 EDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREA 148 (711)
Q Consensus 112 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 148 (711)
..++. +..+|..+..++...|++++|...++...+.
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 65543 5566667777777777777777777777765
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.13 E-value=2.4e-05 Score=75.57 Aligned_cols=89 Identities=10% Similarity=0.060 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 005161 119 LENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEG 198 (711)
Q Consensus 119 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 198 (711)
..+|..+..+|.+.|++++|...+++.++.. +.+...+..+..+|...|++++|...|++..+..+ .+...+..+...
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4556666667777777777777777777653 23566666677777777777777777777666432 244555555566
Q ss_pred HHhcCCHHHHH
Q 005161 199 WGRAGNYREAK 209 (711)
Q Consensus 199 ~~~~g~~~~A~ 209 (711)
+...++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65566655554
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=1.8e-05 Score=66.38 Aligned_cols=96 Identities=17% Similarity=0.022 Sum_probs=49.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCC-CC----HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc------h
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQ-PN----VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC------E 84 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~ 84 (711)
.++..+...+...|++++|...++.+++.... ++ ...+..+..++...|++++|...++...+..+.. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34555555666666777776666666553111 11 1244455555566666666666666554322110 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 85 SAYSAMITIYTRLSLYEKAEEVIRLIR 111 (711)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (711)
.++..+..++...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344555555555555555555555443
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.12 E-value=9.1e-06 Score=77.65 Aligned_cols=148 Identities=9% Similarity=0.033 Sum_probs=65.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 16 QLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
..+..+-..+.+.|++++|...|+.+++.. |+... +...|+.+++...+. ..+|..+..+|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence 334455556666777777777777766542 33221 111222222222110 135666777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-hccCChHHHH
Q 005161 96 RLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGY-GKVSNMEAAQ 174 (711)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~ 174 (711)
+.|++++|+..+++.+..++. +..++..+..+|...|++++|...|++..+.. +.+...+..+.... ...+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776665433 55666677777777777777777777776653 22344444444442 3345566666
Q ss_pred HHHHHHHhc
Q 005161 175 RLFLSIKDV 183 (711)
Q Consensus 175 ~~~~~~~~~ 183 (711)
..|..+...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 677666543
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.09 E-value=0.00018 Score=73.71 Aligned_cols=188 Identities=7% Similarity=-0.083 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 005161 65 NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSL----------YEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG- 133 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 133 (711)
.-++|++.++.+...+|....+|+.-..++...|+ ++++++.++.+...+++ +..+|....-.+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 45678999999999999988899888888888777 88999999998887776 7788888888888888
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC-ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 005161 134 -KLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVS-NMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWY 211 (711)
Q Consensus 134 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 211 (711)
+++++.+.++++.+.. +.+..+|+.-.-++.+.| .++++.+.++++.+..+ -+..+|+.....+.+.+....
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~---- 196 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPD---- 196 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCC----
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccc----
Confidence 6688888888888875 347777877777777777 78888888888777554 456666665555443211100
Q ss_pred HHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCc
Q 005161 212 YKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDN 276 (711)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 276 (711)
.+.. . -...+.++++.+.+.+++...|.....+..+...+.+.++.++
T Consensus 197 ------~~~~-~----------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 ------SGPQ-G----------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp ------SSSC-C----------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ------cccc-c----------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 0000 0 0001234666666666666666666666666666666666554
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.09 E-value=6.1e-06 Score=64.63 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=64.3
Q ss_pred ccCCHHHHHHHHHHHHHcC---CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005161 62 KSWNVEEAEFAFNQMRKLG---LVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEA 138 (711)
Q Consensus 62 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 138 (711)
..|++++|+..|+++.+.+ |....++..+..+|...|++++|+..|++....++. +..++..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3577888888888888874 444677888888888888888888888888776655 566777788888888888888
Q ss_pred HHHHHHHHHcC
Q 005161 139 ELVLVSMREAG 149 (711)
Q Consensus 139 ~~~~~~~~~~~ 149 (711)
...+++..+..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88888877653
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.00 E-value=2.1e-05 Score=75.12 Aligned_cols=146 Identities=14% Similarity=0.005 Sum_probs=78.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005161 53 FGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQ 132 (711)
Q Consensus 53 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (711)
+..+...+.+.|++++|...|.++....+... .+...+++.++...+. ..+|..+..+|.+.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44455555566666666666666665554321 1122233333322221 13778889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCHHHHHHH
Q 005161 133 GKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEG-WGRAGNYREAKWY 211 (711)
Q Consensus 133 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~ 211 (711)
|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+..+ .+...+..+... ....+..+++...
T Consensus 244 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 44788999999999999999999999999877542 234445555444 3345778888999
Q ss_pred HHHHHhc
Q 005161 212 YKELKHL 218 (711)
Q Consensus 212 ~~~~~~~ 218 (711)
|..|...
T Consensus 322 ~~~~l~~ 328 (338)
T 2if4_A 322 YKGIFKG 328 (338)
T ss_dssp -------
T ss_pred HHHhhCC
Confidence 9988765
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.97 E-value=7.4e-05 Score=74.38 Aligned_cols=125 Identities=10% Similarity=-0.043 Sum_probs=82.8
Q ss_pred HHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHH-----CC-CCCC-hHhHHH
Q 005161 583 YGKEGQMENFKNVLRRMKET---SCTFD----HYTYNIMIDIYGEQGWINEVVGVLTELKE-----CG-LRPD-LCSYNT 648 (711)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~-~~~~~~ 648 (711)
+...|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|..++++.++ .| -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777766541 11222 33677777888888888888888877664 11 1233 456788
Q ss_pred HHHHHhccCChHHHHHHHHHHHH---cCCCCCc----chHHHHHHHHHhcchHHHHHHHHHHHHHh
Q 005161 649 LIKAYGIAGMVEDAVGLVKEMRE---NGIEPDK----ITYTNMITALQRNDKFLEAIKWSLWMKQI 707 (711)
Q Consensus 649 l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 707 (711)
|...|...|++++|+.++++..+ .-+.|+. .+...+..++...+++++|...+.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887653 1133432 34556667777788888888888887664
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.94 E-value=4.2e-05 Score=59.51 Aligned_cols=81 Identities=10% Similarity=-0.072 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 32 ELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIR 111 (711)
Q Consensus 32 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (711)
..|...|+.+++.. +.+...+..+..+|...|++++|...|+++.+.+|....+|..+..+|...|++++|...|++..
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677788887764 45677788888888888999999999998888888878888888888888899999888888876
Q ss_pred hC
Q 005161 112 ED 113 (711)
Q Consensus 112 ~~ 113 (711)
..
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=7.9e-06 Score=63.27 Aligned_cols=62 Identities=15% Similarity=-0.009 Sum_probs=29.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005161 52 TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED 113 (711)
Q Consensus 52 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 113 (711)
.+..+...+...|++++|...|+++.+.+|....+|..+..+|...|++++|+..+++....
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 33444444444455555555555444444444444444455555555555555555544443
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=1.3e-05 Score=62.05 Aligned_cols=93 Identities=8% Similarity=-0.054 Sum_probs=63.1
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc------hhHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC------ESAY 87 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~ 87 (711)
+...+..+...+...|++++|.+.|+.+++.. +.+...+..+..++.+.|++++|...|+++.+.+|.. ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 45566667777777777777777777777764 4456667777777777777777777777777777765 4455
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 005161 88 SAMITIYTRLSLYEKAEEVI 107 (711)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~ 107 (711)
..+..++...|+++.|...+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 55666666666555554443
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.89 E-value=2.9e-05 Score=62.51 Aligned_cols=94 Identities=11% Similarity=0.094 Sum_probs=70.3
Q ss_pred HhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCH----------HHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 005161 26 NKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNV----------EEAEFAFNQMRKLGLVCESAYSAMITIYT 95 (711)
Q Consensus 26 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (711)
.+.+.+++|.+.++..++.. +.+...|..+..++...+++ ++|+..|+++.+.+|....+|+.+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34556788888888888876 56777888777777777654 58888888888888888888888888888
Q ss_pred hcC-----------CHHHHHHHHHHHHhCCCCCCHHHH
Q 005161 96 RLS-----------LYEKAEEVIRLIREDKVVPNLENW 122 (711)
Q Consensus 96 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~ 122 (711)
..| ++++|++.|++.++.+ |+...|
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y 127 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHY 127 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHH
Confidence 764 6777777777777654 443344
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.86 E-value=0.00017 Score=52.97 Aligned_cols=77 Identities=19% Similarity=0.146 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 005161 17 LFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIY 94 (711)
Q Consensus 17 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (711)
.+..+...+...|++++|...|+..++.. +.+...+..+..++.+.|++++|...|+++.+.+|....++..+..++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34444444455555555555555554432 223344444444445555555555555555544444444444444443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.85 E-value=0.00014 Score=53.55 Aligned_cols=80 Identities=20% Similarity=0.086 Sum_probs=54.3
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
...+..+...+...|++++|...|++..+.+|....++..+..++...|++++|...+++....++. +..++..+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 4456666667777777777777777777777766677777777777777777777777777665433 444555554444
Q ss_pred H
Q 005161 130 S 130 (711)
Q Consensus 130 ~ 130 (711)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.85 E-value=0.00049 Score=55.32 Aligned_cols=109 Identities=8% Similarity=-0.090 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHH
Q 005161 553 NLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGE----QGWINEVV 628 (711)
Q Consensus 553 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 628 (711)
++++|+..|++..+.| .+... +...|...+..++|.+.|++..+.| +...+..|...|.. .+|+++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555666666555554 22222 4444444455555555555555532 44445555555554 45555566
Q ss_pred HHHHHHHHCCCCCChHhHHHHHHHHhc----cCChHHHHHHHHHHHHc
Q 005161 629 GVLTELKECGLRPDLCSYNTLIKAYGI----AGMVEDAVGLVKEMREN 672 (711)
Q Consensus 629 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 672 (711)
..|++..+.| ++..+..|...|.. .+++++|...+++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 6655555532 34445555555555 55555555555555553
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.81 E-value=6.5e-05 Score=60.51 Aligned_cols=98 Identities=12% Similarity=0.040 Sum_probs=76.9
Q ss_pred HccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHH----------HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005161 61 KKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYE----------KAEEVIRLIREDKVVPNLENWLVMLNAYS 130 (711)
Q Consensus 61 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (711)
.+.+.+++|.+.++...+.+|....+|+.+..++...++++ +|+..|++.+..++. +..+|..+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 35567899999999999999999999999999999988764 888888888887655 6677888888887
Q ss_pred hcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 131 QQG-----------KLEEAELVLVSMREAGFSPNIVAYNTLM 161 (711)
Q Consensus 131 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 161 (711)
..| ++++|.+.|++.++. .|+...|...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 764 788888888887776 45544444333
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.76 E-value=0.00095 Score=53.62 Aligned_cols=110 Identities=10% Similarity=-0.034 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHH
Q 005161 519 LFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGK----EGQMENFKN 594 (711)
Q Consensus 519 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 594 (711)
++++|.+.|++..+.+.+... +...|...+..++|.+.|++..+.| +...+..+...|.. .+++++|..
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 445555555555555433322 4444555555555666666655543 34445555555555 566777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHCC
Q 005161 595 VLRRMKETSCTFDHYTYNIMIDIYGE----QGWINEVVGVLTELKECG 638 (711)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 638 (711)
.|++..+.| ++..+..|...|.. .+|+++|...|++..+.|
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777766643 45556666666666 667777777777777654
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.76 E-value=0.00013 Score=56.57 Aligned_cols=80 Identities=14% Similarity=0.019 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 68 EAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMRE 147 (711)
Q Consensus 68 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 147 (711)
.|...|+.+.+.+|.+..++..+..+|...|++++|+..|++....++. +..++..+..++...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677888888888888888888999999999999999999988876644 566788888888888999999888888876
Q ss_pred c
Q 005161 148 A 148 (711)
Q Consensus 148 ~ 148 (711)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.69 E-value=0.00022 Score=70.94 Aligned_cols=123 Identities=12% Similarity=-0.022 Sum_probs=80.4
Q ss_pred HhcCCHHHHHHHHHHHHHC-----C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCC---C-HHHHHHH
Q 005161 549 GQNKNLESMSSTVQEMQFD-----G--FSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKE---TSCTF---D-HYTYNIM 614 (711)
Q Consensus 549 ~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~---~-~~~~~~l 614 (711)
...|++++|+.++++..+. | .+....+++.+..+|...|++++|..++++.++ .-+.| + ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455566665555554432 1 112345667777777888888888877777653 11122 2 3367888
Q ss_pred HHHHhhcCCHHHHHHHHHHHHH-----CCC-CCC-hHhHHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 615 IDIYGEQGWINEVVGVLTELKE-----CGL-RPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 615 ~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
...|...|++++|..++++..+ .|- .|+ ..+.+.+..++...+.+++|...|+++++
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888764 221 122 34456677788888888999999888876
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.67 E-value=0.00018 Score=54.01 Aligned_cols=66 Identities=18% Similarity=0.042 Sum_probs=52.6
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 47 QPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
+.+...+..+..+|.+.|++++|...|+++.+.+|....+|..+..+|...|++++|...|++...
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345667777788888888888888888888888887777888888888888888888888887654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.39 E-value=0.00083 Score=50.31 Aligned_cols=67 Identities=9% Similarity=-0.035 Sum_probs=44.1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 80 GLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMRE 147 (711)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 147 (711)
+|.+..++..+..+|...|++++|+..|++....++. +..+|..+..+|...|++++|.+.+++.++
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445566777777777777777777777776665543 445666677777777777777777776654
No 209
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.33 E-value=4.4e-07 Score=85.42 Aligned_cols=234 Identities=14% Similarity=0.097 Sum_probs=117.5
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005161 49 NVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNA 128 (711)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (711)
.+.+|..|..+..+.+.+.+|.+-|=+. .++..|..++.+..+.|++++-...++..++....|. .=+.++-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHH
Confidence 3456666666666666666665543211 1233466666666677777776666665544332222 23356666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 005161 129 YSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREA 208 (711)
Q Consensus 129 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 208 (711)
|++.+++.+..+.+ . .|+..-...+..-|...|.++.|.-+|..+.. |.-|...+++.|++..|
T Consensus 126 yAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHH
Confidence 77766655433222 1 24444445556666666666666666544332 22233334444444444
Q ss_pred HHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhcc
Q 005161 209 KWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQH 288 (711)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 288 (711)
.+.-++ -.++.||..+-.+|...+++.-|...--.++-..- -+..++..|...|.+++-..+++..+...
T Consensus 190 VdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhad----eL~elv~~YE~~G~f~ELIsLlEaglglE 259 (624)
T 3lvg_A 190 VDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD----ELEELINYYQDRGYFEELITMLEAALGLE 259 (624)
T ss_dssp TTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS----CCSGGGSSSSTTCCCTTSTTTHHHHTTST
T ss_pred HHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH----HHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 333221 12445566666666666655544443333332211 11234445556666666666666655321
Q ss_pred CCcchhHHHHHHHHHHhcCCHHHHHHHHH
Q 005161 289 VLFNLTSCSILVMAYVKHGLIDDAMKVLG 317 (711)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 317 (711)
......++-|.-.|++- ++++..+.++
T Consensus 260 -rAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 260 -RAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp -TCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred -chhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 22455566666555543 3444444443
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.29 E-value=0.011 Score=55.21 Aligned_cols=75 Identities=17% Similarity=0.085 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcchHHH
Q 005161 605 TFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKITYTN 683 (711)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 683 (711)
+.++..|..+...+...|++++|...+++++.. .|+...|..+...+...|++++|.+.++++.. +.|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 556677777776677778888888888888885 47777777778888888888888888888887 6777666543
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.26 E-value=0.00055 Score=51.23 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=30.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 58 GLYKKSWNVEEAEFAFNQMRKLGLVCES-AYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 58 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
..+.+.|++++|...|+.+.+.+|.... ++..+..+|...|++++|.+.|++....+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444555555555555555555555544 55555555555555555555555555443
No 212
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.22 E-value=3e-06 Score=79.97 Aligned_cols=74 Identities=7% Similarity=0.030 Sum_probs=36.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 005161 544 IIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGW 623 (711)
Q Consensus 544 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (711)
-+..|.+.++|++++.+.++ ...|--.+......|+.+-|.++++-..+.| +...|.+.+..|...=+
T Consensus 460 AA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlr 527 (624)
T 3lvg_A 460 AAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLR 527 (624)
T ss_dssp HHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSS
T ss_pred HHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccC
Confidence 33445566666665543321 1122223334445666666666666666543 33445555555544444
Q ss_pred HHHHHH
Q 005161 624 INEVVG 629 (711)
Q Consensus 624 ~~~A~~ 629 (711)
.+-+++
T Consensus 528 pDvVlE 533 (624)
T 3lvg_A 528 PDVVLE 533 (624)
T ss_dssp CHHHHH
T ss_pred hHHHHH
Confidence 444443
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.21 E-value=0.0069 Score=56.56 Aligned_cols=125 Identities=9% Similarity=0.058 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHh----cC-CHHHHH---HHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHH
Q 005161 520 FKRVRKLFSMAKKLGLVDVISYNTIIAAYGQ----NK-NLESMS---STVQEMQF-DGFSVSLEAYNSMLDAYGKEGQME 590 (711)
Q Consensus 520 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~-~~~~a~---~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 590 (711)
..+|..+|+++.+..|.....+..+..+|.. .+ ...... ..+..... ...+.+..+|..+...+...|+++
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d 294 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD 294 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHH
Confidence 4667777777777766665555554444431 10 111111 11111111 123567777877777777789999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 005161 591 NFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNT 648 (711)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 648 (711)
+|...+++++..+ |+...|..+...+.-.|++++|.+.+++... +.|...+|..
T Consensus 295 ~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~ 348 (372)
T 3ly7_A 295 ESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYW 348 (372)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHH
T ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHH
Confidence 9999999999864 7877888888889999999999999999988 5787776644
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.21 E-value=0.00066 Score=50.76 Aligned_cols=83 Identities=10% Similarity=0.042 Sum_probs=66.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhHcCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC
Q 005161 20 TLIYACNKRGCVELGAKWFHMMLECDVQPNVA-TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS 98 (711)
Q Consensus 20 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 98 (711)
.....+...|++++|...|+.+++.. +.+.. .+..+..+|...|++++|...|+++.+.+|....++.. +
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 34567889999999999999999875 44566 88889999999999999999999999999987666632 4
Q ss_pred CHHHHHHHHHHHH
Q 005161 99 LYEKAEEVIRLIR 111 (711)
Q Consensus 99 ~~~~a~~~~~~~~ 111 (711)
.+.++...|++..
T Consensus 76 ~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 76 MVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHh
Confidence 4555666655443
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.20 E-value=0.0038 Score=45.53 Aligned_cols=70 Identities=11% Similarity=0.013 Sum_probs=58.1
Q ss_pred CCCHhhHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005161 47 QPNVATFGMLMGLYKKSWN---VEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVV 116 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 116 (711)
+.+...+..+..++...++ .++|..+|++..+.+|.+..++..+...+.+.|++++|+..|+.+++.++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677777777777764444 689999999999999999899999999999999999999999998886643
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.12 E-value=0.023 Score=50.73 Aligned_cols=91 Identities=15% Similarity=0.119 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhcc-----CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-CCH
Q 005161 135 LEEAELVLVSMREAGFSPN---IVAYNTLMTGYGKV-----SNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRA-GNY 205 (711)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 205 (711)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++..+.++.-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45667777777775 344 55778888888774 88888888888888765433467777777777774 888
Q ss_pred HHHHHHHHHHHhcCCC--ccHhhH
Q 005161 206 REAKWYYKELKHLGYK--PNASNL 227 (711)
Q Consensus 206 ~~A~~~~~~~~~~~~~--~~~~~~ 227 (711)
++|...+++....... |+....
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHH
Confidence 8888888888887655 554333
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.94 E-value=0.0027 Score=62.08 Aligned_cols=87 Identities=5% Similarity=-0.133 Sum_probs=65.6
Q ss_pred hcCCHHHHHHHHHHHHH---cCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHH-----CC-CCCC-hHhHHHHH
Q 005161 585 KEGQMENFKNVLRRMKE---TSCTFD----HYTYNIMIDIYGEQGWINEVVGVLTELKE-----CG-LRPD-LCSYNTLI 650 (711)
Q Consensus 585 ~~g~~~~A~~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~-~~~~~~l~ 650 (711)
..|++++|..++++.++ .-+.|+ ..+++.|..+|...|++++|..++++.++ .| -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 56788999998888765 212232 24788888888889999999999888875 22 2334 45688888
Q ss_pred HHHhccCChHHHHHHHHHHHH
Q 005161 651 KAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 651 ~~~~~~g~~~~A~~~~~~~~~ 671 (711)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 889999999999999988887
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.93 E-value=0.003 Score=61.78 Aligned_cols=87 Identities=8% Similarity=-0.055 Sum_probs=56.9
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cC-CCCC-HHHHHHHH
Q 005161 550 QNKNLESMSSTVQEMQFD---GFSV----SLEAYNSMLDAYGKEGQMENFKNVLRRMKE-----TS-CTFD-HYTYNIMI 615 (711)
Q Consensus 550 ~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~~~-~~~~~~l~ 615 (711)
..|++++|+.++++..+. -+.| ...+++.+..+|...|++++|..++++.++ .| -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 566777888777776542 1112 235667777777788888888888877663 11 1122 23677777
Q ss_pred HHHhhcCCHHHHHHHHHHHHH
Q 005161 616 DIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 616 ~~~~~~g~~~~A~~~~~~~~~ 636 (711)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 778888888888887777765
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.92 E-value=0.0095 Score=43.40 Aligned_cols=69 Identities=10% Similarity=-0.029 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 005161 605 TFDHYTYNIMIDIYGEQGW---INEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD 677 (711)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 677 (711)
+.++..+..+..++...++ .++|..++++.++ +.|+ +.....+...+...|++++|+..|+++.+ ..|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~--~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD--SNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--CCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 4556666666666654443 5778888888777 3555 66777777778888888888888888876 4454
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.73 E-value=0.0077 Score=58.99 Aligned_cols=92 Identities=12% Similarity=-0.007 Sum_probs=73.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHH-----CC-CCCC-hHh
Q 005161 580 LDAYGKEGQMENFKNVLRRMKET---SCTFD----HYTYNIMIDIYGEQGWINEVVGVLTELKE-----CG-LRPD-LCS 645 (711)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~p~-~~~ 645 (711)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.+...|...|++++|..+++++++ .| ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 55667889999999999998752 12233 34788899999999999999999998875 12 2333 467
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 005161 646 YNTLIKAYGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 646 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 671 (711)
++.|...|...|++++|+.+++++.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 89999999999999999999999987
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.72 E-value=0.022 Score=50.82 Aligned_cols=95 Identities=12% Similarity=0.072 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHH
Q 005161 66 VEEAEFAFNQMRKLGLVC--ESAYSAMITIYTRL-----SLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQ-GKLEE 137 (711)
Q Consensus 66 ~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 137 (711)
...|...++++.+.+|.. ..+|..++..|.+. |+.++|.+.|++.+..++.-+..++....+.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 556788888888888873 45788888888884 88888888888887766433466677777777774 88888
Q ss_pred HHHHHHHHHHcCCC--CCHHHHHHH
Q 005161 138 AELVLVSMREAGFS--PNIVAYNTL 160 (711)
Q Consensus 138 a~~~~~~~~~~~~~--~~~~~~~~l 160 (711)
+.+.+++.+...+. |+....|.+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHH
Confidence 88888888887655 555444443
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.71 E-value=0.0061 Score=59.71 Aligned_cols=93 Identities=14% Similarity=0.020 Sum_probs=71.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC---CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HH
Q 005161 544 IIAAYGQNKNLESMSSTVQEMQFDG---FSV----SLEAYNSMLDAYGKEGQMENFKNVLRRMKET---SCTFD----HY 609 (711)
Q Consensus 544 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~ 609 (711)
.+..+...|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.+++++++. -..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3556778899999999999887641 112 2457788889999999999999999988741 12222 33
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 610 TYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
+++.|...|...|++++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 788899999999999999999998876
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.71 E-value=0.016 Score=46.04 Aligned_cols=82 Identities=15% Similarity=-0.005 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccC---CHHHHHHHHHHHHHcC-C-CchhHHHHHHHHHHhcCCHHHHHHH
Q 005161 32 ELGAKWFHMMLECDVQPNVATFGMLMGLYKKSW---NVEEAEFAFNQMRKLG-L-VCESAYSAMITIYTRLSLYEKAEEV 106 (711)
Q Consensus 32 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~ 106 (711)
..+.+-|....+.+ +++..+...+.-++++++ +++++..+|+.+.+.+ | ...+.+..+..+|.+.|++++|++.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34445555555544 355555555666666666 4556666666666655 3 2245566666666666666666666
Q ss_pred HHHHHhCC
Q 005161 107 IRLIREDK 114 (711)
Q Consensus 107 ~~~~~~~~ 114 (711)
++.+++..
T Consensus 94 ~~~lL~ie 101 (152)
T 1pc2_A 94 VRGLLQTE 101 (152)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 66666644
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.70 E-value=0.015 Score=43.59 Aligned_cols=77 Identities=12% Similarity=0.010 Sum_probs=54.0
Q ss_pred CchHhHHHHHHHHHhcCChHHHHHHHHHHhHcC------CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhH
Q 005161 13 LNFQLFNTLIYACNKRGCVELGAKWFHMMLECD------VQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESA 86 (711)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 86 (711)
++...+..+-..+.+.|++..|..+|+.+++.- ..+....+..|..++.+.|+++.|...++.+.+..|....+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 455566677778888888888888888877641 12345566777777778888888888888887777766544
Q ss_pred HHH
Q 005161 87 YSA 89 (711)
Q Consensus 87 ~~~ 89 (711)
.+.
T Consensus 83 ~~n 85 (104)
T 2v5f_A 83 NGN 85 (104)
T ss_dssp HHH
T ss_pred Hhh
Confidence 333
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.53 E-value=0.024 Score=45.13 Aligned_cols=84 Identities=11% Similarity=0.014 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005161 65 NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLS---LYEKAEEVIRLIREDK-VVPNLENWLVMLNAYSQQGKLEEAEL 140 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 140 (711)
.+..+.+.|......++.+..+...+..++++.+ +.++++.+++...+.+ +.-+...+-.+.-++.+.|++++|.+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4556667777777777777788888888888877 5568888888877754 21134556667777788888888888
Q ss_pred HHHHHHHc
Q 005161 141 VLVSMREA 148 (711)
Q Consensus 141 ~~~~~~~~ 148 (711)
.++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88888886
No 226
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.40 E-value=1.3 Score=47.17 Aligned_cols=263 Identities=10% Similarity=-0.052 Sum_probs=138.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C-----CChhhHHHHH
Q 005161 405 VRMYVKAGSLKDACAVLETMEKQK-DIEPDAYLYCDMLRIYQQCGMLDKLSYLYYKILKSGI--T-----WNQELYDCVI 476 (711)
Q Consensus 405 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~ 476 (711)
.-+....|+.++++.++....... ...+....-..+.-+....|..+++..++...+...- . +....-..+.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 344666788888888887654311 1112222223333344556665677777777655421 0 1111122222
Q ss_pred HHHHccCC-HHHHHHHHHHHHhCCCCccH--HHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCC
Q 005161 477 NCCARALP-IDELSRVFDEMLQHGFTPNI--ITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKN 553 (711)
Q Consensus 477 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 553 (711)
-+..-.|. -+++.+.+..++... .+.. ...-.+...+.-.|+.+....++..+.+....+..-...+.-++...|+
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 23333332 245566666655432 1111 1122333445567888888888887765432222223334444557788
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 005161 554 LESMSSTVQEMQFDGFSVSLEAYN--SMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVL 631 (711)
Q Consensus 554 ~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 631 (711)
.+.+..+.+.+.... .|....-. .+.-+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 888888888877642 22222222 3344566778887777788888763 1223332223333444566666777777
Q ss_pred HHHHHCCCCCChHhHHHHHHHHhccCCh-HHHHHHHHHHHH
Q 005161 632 TELKECGLRPDLCSYNTLIKAYGIAGMV-EDAVGLVKEMRE 671 (711)
Q Consensus 632 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 671 (711)
+.+.+.+ .|...--..+.-+....|+. .+++..+..+..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6665542 44444334444444445443 678888888863
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.34 E-value=0.23 Score=37.82 Aligned_cols=63 Identities=21% Similarity=0.145 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 005161 437 YCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGF 500 (711)
Q Consensus 437 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 500 (711)
...-+..+...|..|+..+++..+.. +.+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33444444455555555555554333 2234445555555555555555555555555555543
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.24 E-value=0.22 Score=54.19 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=21.3
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 005161 481 RALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMA 530 (711)
Q Consensus 481 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 530 (711)
..|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|..+
T Consensus 664 ~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345555555543221 23445555555555555555555555433
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.16 E-value=0.23 Score=53.95 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 005161 88 SAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKV 167 (711)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (711)
..++..+.+.|.+++|+++.+. | . .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------~--~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------Q--D---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------H--H---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC-------c--c---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 5555666666666666655421 1 0 1122234557777776654322 2556677777777777
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 168 SNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKELK 216 (711)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 216 (711)
++++.|.+.|.++.. |..+...+...|+.+....+.+...
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777766543 3333444444555555444444333
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.14 E-value=0.048 Score=40.78 Aligned_cols=70 Identities=11% Similarity=-0.012 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC------CCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 607 DHYTYNIMIDIYGEQGWINEVVGVLTELKECG------LRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 607 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
+..-+..+...+...|+++.|...|++..+.- -.+...++..|..+|.+.|++++|+..++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 33445566666777777777777777666520 112356677777888888888888888888776 66754
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.11 E-value=0.094 Score=41.02 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=17.4
Q ss_pred chHhHHHHHHHHHhcCCh------HHHHHHHHHHhHc
Q 005161 14 NFQLFNTLIYACNKRGCV------ELGAKWFHMMLEC 44 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~------~~a~~~~~~~~~~ 44 (711)
|..+|-..+...-..|++ +...++|+.++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~ 48 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA 48 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc
Confidence 445555555555555665 5555566655553
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.03 E-value=0.11 Score=40.54 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHH
Q 005161 203 GNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQ 266 (711)
Q Consensus 203 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 266 (711)
++.++|.++|+.+.+.+-+. ...|....+.-.+.|++..|+.++...+..++.+...+...++
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 56666666666665542222 4555555555566777777777777777766665544444333
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.51 Score=38.62 Aligned_cols=104 Identities=9% Similarity=0.019 Sum_probs=63.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005161 57 MGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLE 136 (711)
Q Consensus 57 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 136 (711)
.....+.|+++.|.++.+.+ .....|..+.......|+++-|.+.|+...+ +..+.-.|...|+.+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 34445678888887776654 3356788888888888888888887776543 223333455567766
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHH
Q 005161 137 EAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSI 180 (711)
Q Consensus 137 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 180 (711)
....+-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 6665555444433 1233333444567777777777543
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.52 Score=38.56 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=21.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHH
Q 005161 131 QQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSI 180 (711)
Q Consensus 131 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 180 (711)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 445555555544332 24445555555555555555555555443
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.65 E-value=0.098 Score=39.90 Aligned_cols=84 Identities=12% Similarity=0.005 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHH
Q 005161 519 LFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLES---MSSTVQEMQFDGFS-VSLEAYNSMLDAYGKEGQMENFKN 594 (711)
Q Consensus 519 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 594 (711)
....+.+-+......+.++..+-..+.+++.+.++... ++.+++++.+.+.+ ........+.-++.+.|++++|.+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34555555665555566777777777777777776655 67777776665411 133344455566777777777777
Q ss_pred HHHHHHHc
Q 005161 595 VLRRMKET 602 (711)
Q Consensus 595 ~~~~~~~~ 602 (711)
.++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777763
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.59 E-value=3.1 Score=44.50 Aligned_cols=155 Identities=9% Similarity=-0.053 Sum_probs=70.2
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchh--HHHHHHHHHHhcCCHHH
Q 005161 479 CARALPIDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVI--SYNTIIAAYGQNKNLES 556 (711)
Q Consensus 479 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 556 (711)
+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+.....|... .-..+.-+|+..|+...
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH
Confidence 344455555556665555421 111111122222233556666666666666553322221 12234445666677666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHH
Q 005161 557 MSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWI-NEVVGVLTELK 635 (711)
Q Consensus 557 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 635 (711)
...++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|+. .++..++..+.
T Consensus 579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 666666666531 1222222222223334555555666665554432 33333222222333333332 46666666665
Q ss_pred H
Q 005161 636 E 636 (711)
Q Consensus 636 ~ 636 (711)
.
T Consensus 657 ~ 657 (963)
T 4ady_A 657 K 657 (963)
T ss_dssp T
T ss_pred c
Confidence 3
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.36 E-value=0.67 Score=35.42 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCChHHHHHHHHHHHHcCC
Q 005161 610 TYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMVEDAVGLVKEMRENGI 674 (711)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 674 (711)
.+...++.+..+|+-++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344444555555555555555555322 1344555555555555555555555555555555544
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.99 E-value=0.24 Score=37.80 Aligned_cols=84 Identities=10% Similarity=0.028 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHH---HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005161 65 NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEK---AEEVIRLIREDK-VVPNLENWLVMLNAYSQQGKLEEAEL 140 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 140 (711)
.+..+.+.|......+.+...+-..+..++++..+... ++.+++.+...+ +.-.....-.+.-++.+.|++++|.+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 33444445554444455555555556666666555544 555555555443 11122333444555556666666666
Q ss_pred HHHHHHHc
Q 005161 141 VLVSMREA 148 (711)
Q Consensus 141 ~~~~~~~~ 148 (711)
.++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666654
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.58 E-value=6 Score=38.79 Aligned_cols=50 Identities=10% Similarity=0.077 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhc-----CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 005161 448 GMLDKLSYLYYKILKS-----GITWNQELYDCVINCCARALPIDELSRVFDEMLQ 497 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 497 (711)
|+++.|++.+..+.+. ...........++..|...++++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6677777776555432 2445566777788888888888887777665554
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.68 E-value=0.64 Score=48.52 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 005161 260 ILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKR 320 (711)
Q Consensus 260 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 320 (711)
++..-+..+...|+++.|+++.+++....|. +-.+|..|+..|...|+++.|+-.++.+.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3444456667778888888888888877666 77889999999999999999988887764
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.06 E-value=1.1 Score=46.79 Aligned_cols=54 Identities=9% Similarity=0.068 Sum_probs=44.2
Q ss_pred HHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 511 LDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEM 564 (711)
Q Consensus 511 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 564 (711)
.+.+...|+++-|+++-++.....|.+..+|..|..+|...|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344566788888888888888888888888888888888888888888877766
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.16 E-value=1.5 Score=33.64 Aligned_cols=66 Identities=11% Similarity=-0.023 Sum_probs=35.2
Q ss_pred CchhHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005161 536 VDVISYNTIIAAYGQNKNLE---SMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKE 601 (711)
Q Consensus 536 ~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (711)
+++.+-..+.+++.+.++.+ +++.+++++.+.+.......+-.+.-++.+.|++++|++..+.+++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555555555555555432 4555555555543212233444455556666666666666666665
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.02 E-value=3.5 Score=31.66 Aligned_cols=71 Identities=14% Similarity=-0.143 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 604 CTFDHYTYNIMIDIYGEQGW---INEVVGVLTELKECGLRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 604 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
-.|+..+-..+..++.+..+ ...++.+++.+.+.+ |. ...+-.|.-++.+.|++++|.+..+.+.+ +.|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 35677777777777777665 457888888888753 42 45667778889999999999999999988 78864
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.97 E-value=1.5 Score=42.09 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=68.8
Q ss_pred CCchHhHHHHHHHHH---hcCChHHHHHHHHHHhHc--CCC-CCHhhHHHHHHHHHccCCHHHH-HHHHHHHHHcCCCch
Q 005161 12 KLNFQLFNTLIYACN---KRGCVELGAKWFHMMLEC--DVQ-PNVATFGMLMGLYKKSWNVEEA-EFAFNQMRKLGLVCE 84 (711)
Q Consensus 12 ~~~~~~~~~~l~~~~---~~~~~~~a~~~~~~~~~~--~~~-~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~ 84 (711)
..|...|..++.... ..|+...|...++.++.. |.. ++... +.+-.+ ..-++... .
T Consensus 109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~-----------~~w~~~~r~~l~~~~------~ 171 (388)
T 2ff4_A 109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-----------FQFVEPFATALVEDK------V 171 (388)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-----------STTHHHHHHHHHHHH------H
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCc-----------hhHHHHHHHHHHHHH------H
Confidence 345666666665433 457888888888888764 211 21110 111111 11111110 1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 005161 85 SAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMRE-----AGFSPNIVAYN 158 (711)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 158 (711)
.+...++..+...|++.+|...++.+....+. +...+..+|.++.+.|+..+|.+.|+.+.+ .|++|+..+-.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 13444555666666666666666666554433 555666666666666666666666666543 36666655443
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.59 E-value=3.2 Score=33.37 Aligned_cols=25 Identities=8% Similarity=-0.097 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLI 110 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~ 110 (711)
++..++.++...|+|..|...|++.
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444555555555555555555554
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.45 E-value=2.7 Score=33.79 Aligned_cols=143 Identities=8% Similarity=-0.050 Sum_probs=76.6
Q ss_pred hhcCCCCc--hHhHHHHHHHHHhcCChHHHHHHHHHHhHcC-CCCCH-------hhHHHHHHHHHccCCHHHHHHHHHHH
Q 005161 7 MSLGAKLN--FQLFNTLIYACNKRGCVELGAKWFHMMLECD-VQPNV-------ATFGMLMGLYKKSWNVEEAEFAFNQM 76 (711)
Q Consensus 7 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~ 76 (711)
+++|.-|. -+.+-.-++.+...|.++.|.-+...++... ..|+. .++..+.+++...|++..|...|+.+
T Consensus 10 ~~~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 10 HSSGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp -----------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 36677665 4556667788999999999999888876542 23332 25566788889999999999999997
Q ss_pred HHcCC---CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005161 77 RKLGL---VCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPN 153 (711)
Q Consensus 77 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 153 (711)
..... ....+...+. . ...... ......+.+..-.+..+|.+.+++++|+.+++.+... ..+
T Consensus 90 Lq~~k~l~k~~s~~~~~~-~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt 154 (167)
T 3ffl_A 90 LQQKKALSKTSKVRPSTG-N---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRT 154 (167)
T ss_dssp HHHHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCC
T ss_pred HHHHHHHhcCCCcccccc-c---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcC
Confidence 54221 1111111110 0 000000 0011123344445677777888888888887776544 234
Q ss_pred HHHHHHHHHHh
Q 005161 154 IVAYNTLMTGY 164 (711)
Q Consensus 154 ~~~~~~l~~~~ 164 (711)
+.+--.|.+.|
T Consensus 155 ~kvnm~LakLy 165 (167)
T 3ffl_A 155 PKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 44444444433
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.84 E-value=16 Score=35.81 Aligned_cols=190 Identities=13% Similarity=0.066 Sum_probs=106.7
Q ss_pred cCChHHHHHHHHHHhHc-----CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHH----hcC
Q 005161 28 RGCVELGAKWFHMMLEC-----DVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYT----RLS 98 (711)
Q Consensus 28 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~ 98 (711)
.|++.+|++-+..+.+. +..........++..|...|+++...+.+..+.........+...+++.+. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36788888777655532 233456667778888889999998888777766555444444445544332 222
Q ss_pred CHHH--HHHHHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC---CHHHHHHHHHHhh
Q 005161 99 LYEK--AEEVIRLIRE--DK-VVP---NLENWLVMLNAYSQQGKLEEAELVLVSMREA--GFSP---NIVAYNTLMTGYG 165 (711)
Q Consensus 99 ~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~~ 165 (711)
..+. -..+.+.... .| ... .......+...+...|++.+|.++++.+... +... -...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1122221111 11 111 1122345667777788888888888877642 1111 1345566667777
Q ss_pred ccCChHHHHHHHHHHHh----cCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 166 KVSNMEAAQRLFLSIKD----VGLEPD--ETTYRSMIEGWGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 166 ~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 217 (711)
..+++.+|..++.++.. ....|+ ...+...+..+...++|.+|...|.++-.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77888888777776532 111122 12345556666667777777766665543
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.63 E-value=6.1 Score=30.77 Aligned_cols=70 Identities=14% Similarity=-0.139 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHCCCCC-C-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 605 TFDHYTYNIMIDIYGEQGW---INEVVGVLTELKECGLRP-D-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
.|+..+-..+..++.+..+ ..+++.+++.+... .| + ....-.|.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 5677777777777777764 45788888888774 34 2 45566677889999999999999999998 78864
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.35 E-value=4.1 Score=29.27 Aligned_cols=46 Identities=7% Similarity=0.067 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 591 NFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
+..+-++.+....+.|++....+.+.+|.+.+|+.-|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555555566666666666666666666666666666555
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.96 E-value=5 Score=28.85 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCC
Q 005161 485 IDELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL 535 (711)
Q Consensus 485 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 535 (711)
.-+..+-+..+....+.|++....+.+.+|-+.+++.-|.++++.++.+..
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~ 76 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG 76 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 334444444555555555555555555555555555555555555554433
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.63 E-value=14 Score=33.70 Aligned_cols=163 Identities=9% Similarity=0.033 Sum_probs=79.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcCCHHHHHH----HHHHHHhcCCCCChhhHHHHHHHH
Q 005161 404 VVRMYVKAGSLKDACAVLETMEKQKDIEPDAYLYCDMLRIYQQCGMLDKLSY----LYYKILKSGITWNQELYDCVINCC 479 (711)
Q Consensus 404 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~ 479 (711)
+..-|.+.+++++|++++..-.. .+.+.|+...|.+ +.+.+.+.+.+++......++..+
T Consensus 39 l~~Ry~~~~~~~eAidlL~~ga~----------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQGAL----------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33346666777777776654311 1233344333333 334444556666666666666555
Q ss_pred HccCCHH-HHHHHHHHHH----hCC--CCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc-
Q 005161 480 ARALPID-ELSRVFDEML----QHG--FTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQN- 551 (711)
Q Consensus 480 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 551 (711)
......+ .=.++.+.++ +.| -.-++.....+...|.+.|++.+|+..|-... ..++..+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~---~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT---HDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CccHHHHHHHHHHHHHhc
Confidence 4432111 1122333332 221 12355666677777888888888877664110 01344444444433332
Q ss_pred --CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 552 --KNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMK 600 (711)
Q Consensus 552 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (711)
|...++--++. . .+--|.-.|+...|..+++...
T Consensus 180 ~~~~~~e~dlf~~--------------R-aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 180 DDIEDSTVAEFFS--------------R-LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TCCCHHHHHHHHH--------------H-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHH--------------H-HHHHHHHhcCHHHHHHHHHHHH
Confidence 33322211111 1 1223456688888888887764
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.83 E-value=13 Score=41.91 Aligned_cols=52 Identities=12% Similarity=-0.005 Sum_probs=32.0
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005161 159 TLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYREAKWYYKEL 215 (711)
Q Consensus 159 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 215 (711)
.++..+.+.+.++.+.++..-.. .+....-.+..++...|++++|.+.|.+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34445555666666655443322 23344455667778888888888888765
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.77 E-value=3.3 Score=39.80 Aligned_cols=67 Identities=7% Similarity=-0.062 Sum_probs=38.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCChhh
Q 005161 509 VMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFD-----GFSVSLEA 575 (711)
Q Consensus 509 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 575 (711)
.++..+...|+++++...+..+....|-+...+..++.++...|+..+|++.|+.+.+. |+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34455555666666666666666665556666666666666666666666666554332 55555443
No 254
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=86.86 E-value=17 Score=37.34 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=20.6
Q ss_pred HHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 005161 160 LMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGR 201 (711)
Q Consensus 160 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 201 (711)
++-.|.++|++++|.++.++.... +..-...+...+..|+.
T Consensus 158 ~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 158 LIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 445566778888887777655431 11111345555555553
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.86 E-value=45 Score=37.52 Aligned_cols=57 Identities=7% Similarity=0.065 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 005161 259 SILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGLIDDAMKVLGDKR 320 (711)
Q Consensus 259 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 320 (711)
.....++..+...+.++.+.++..-. . .+......+...+...|++++|.+.|.+..
T Consensus 813 ~~~~~l~~~l~~~~~~~~~~~l~~~~-~----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 813 DLVTELVEKLFLFKQYNACMQLIGWL-N----SDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp CHHHHHHHHHHHHSCTTHHHHHHHHS-C----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred hhHHHHHHHHHHhhhHHHHHHHhhhc-c----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 45556777777888887776654322 2 144455667888899999999999998753
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.84 E-value=4.3 Score=35.76 Aligned_cols=60 Identities=12% Similarity=0.021 Sum_probs=43.8
Q ss_pred HHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 005161 23 YACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVC 83 (711)
Q Consensus 23 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 83 (711)
..+.+.|++++|+.....-++.. +.|......|+..||-.|+++.|.+-++.+.+.+|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 45567777777777777777765 5667777777777777788888877777777777654
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.26 E-value=11 Score=28.88 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHH
Q 005161 486 DELSRVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTI 544 (711)
Q Consensus 486 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 544 (711)
-+..+-++.+....+.|++......+.+|-+.+++.-|.++|+-++.+..+...+|..+
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 34444445555555556666665556666666666666666655555443333334333
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.19 E-value=8 Score=29.58 Aligned_cols=59 Identities=10% Similarity=0.092 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 005161 591 NFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLI 650 (711)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 650 (711)
+..+-++.+....+.|++....+.+.+|.+.+|+.-|.++|+-++.+ +.+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34444555555556677777777777777777777777777666653 233344455444
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.81 E-value=27 Score=32.20 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=43.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 536 VDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMI 615 (711)
Q Consensus 536 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 615 (711)
-++.....+...|.+.+++.+|...|- .|-.++...+..++.-+...+... .++...-.+++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH
Confidence 477777888888888888888777662 232333345543333332222111 11222222222
Q ss_pred HHHhhcCCHHHHHHHHHHHHH
Q 005161 616 DIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 616 ~~~~~~g~~~~A~~~~~~~~~ 636 (711)
-|...+++..|..+++...+
T Consensus 196 -~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHHH
Confidence 34456788888776666553
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.25 E-value=5.1 Score=35.32 Aligned_cols=56 Identities=14% Similarity=-0.054 Sum_probs=44.3
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005161 59 LYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDK 114 (711)
Q Consensus 59 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 114 (711)
.+.+.|++++|++....-.+.+|.+......+++.+|-.|+++.|.+-++...+.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34567888888888888888888888888888888888888888888887776654
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.11 E-value=15 Score=35.85 Aligned_cols=98 Identities=9% Similarity=-0.069 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHH---
Q 005161 539 ISYNTIIAAYGQNKNLESMSSTVQEMQFDG--FSVSLEAYNSMLDAYGKEGQMENFKNVLRRMKET-SCTFDHYTYN--- 612 (711)
Q Consensus 539 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~--- 612 (711)
.++..++..|.+.|+++.|.+.+.++.... ...-...+...++.+...+++..+...++++... .-.++....+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 355667777777777777777777766542 2222345555666666677777777777666431 0112222111
Q ss_pred -HHHHHHhhcCCHHHHHHHHHHHHH
Q 005161 613 -IMIDIYGEQGWINEVVGVLTELKE 636 (711)
Q Consensus 613 -~l~~~~~~~g~~~~A~~~~~~~~~ 636 (711)
.-+..+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 111223445666666666655544
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.97 E-value=12 Score=31.34 Aligned_cols=53 Identities=19% Similarity=0.161 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 005161 624 INEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEP 676 (711)
Q Consensus 624 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 676 (711)
..++..+|..|...|+--. ...|...+..+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555544444333 3344444444445555555555555544444444
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.61 E-value=20 Score=27.95 Aligned_cols=69 Identities=10% Similarity=-0.063 Sum_probs=41.9
Q ss_pred CCCHhhHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005161 47 QPNVATFGMLMGLYKKSWN---VEEAEFAFNQMRKLGLVC-ESAYSAMITIYTRLSLYEKAEEVIRLIREDKV 115 (711)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 115 (711)
.|+..+--.+.-++.++.+ ...+..+++.+.+.++.. ......+..++.+.|++++|++..+.+++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 3555555555555555553 445666777666665543 34555666677777777777777777766543
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.44 E-value=15 Score=26.31 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=6.7
Q ss_pred HHHhcCCHHHHHHHH
Q 005161 93 IYTRLSLYEKAEEVI 107 (711)
Q Consensus 93 ~~~~~~~~~~a~~~~ 107 (711)
.+...|+|++|..+.
T Consensus 48 SLmNrG~Yq~Al~l~ 62 (115)
T 2uwj_G 48 SLANQGRYQEALAFA 62 (115)
T ss_dssp HHHHTTCHHHHHGGG
T ss_pred HHHcchhHHHHHHhc
Confidence 334444444444443
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.19 E-value=10 Score=36.90 Aligned_cols=118 Identities=10% Similarity=0.006 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHHcCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 005161 65 NVEEAEFAFNQMRKLGLV---CESAYSAMITIYTRLSLYEKAEEVIRLIREDK--VVPNLENWLVMLNAYSQQGKLEEAE 139 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 139 (711)
.+++-.+......+.+.. ...+...++..|.+.|++++|.+.+.++...- ...-...+..+++.+...+++..+.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 455555555555553332 24578889999999999999999999987643 2223466778888888899999998
Q ss_pred HHHHHHHHc---CCCCCHHH--HHHHHHHhhccCChHHHHHHHHHHHh
Q 005161 140 LVLVSMREA---GFSPNIVA--YNTLMTGYGKVSNMEAAQRLFLSIKD 182 (711)
Q Consensus 140 ~~~~~~~~~---~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~ 182 (711)
..+.+.... +..|+... ...-+..+...+++..|...|-+...
T Consensus 189 ~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 888887543 22232221 11112234567899999888877654
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.03 E-value=15 Score=26.27 Aligned_cols=76 Identities=20% Similarity=0.161 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005161 65 NVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVS 144 (711)
Q Consensus 65 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 144 (711)
..++|..+-+++...+- .+.+-..-+..+...|+|++|..+.+... .||...|.++-.. +.|-.+++..-+.+
T Consensus 22 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 34444444444444333 22222222233444455555544443222 3444444333221 33444444444433
Q ss_pred HHH
Q 005161 145 MRE 147 (711)
Q Consensus 145 ~~~ 147 (711)
+-.
T Consensus 95 la~ 97 (116)
T 2p58_C 95 LAR 97 (116)
T ss_dssp HTT
T ss_pred HHh
Confidence 333
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=77.64 E-value=50 Score=31.44 Aligned_cols=166 Identities=8% Similarity=-0.055 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CChhhHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCc-----cH
Q 005161 435 YLYCDMLRIYQQCGMLDKLSYLYYKILKSGIT----WNQELYDCVINCCARA-LPIDELSRVFDEMLQHGFTP-----NI 504 (711)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-----~~ 504 (711)
.....+...|.+.|+.++..+++......-.. -.......++..+... +..+.-.++..+..+..-.. ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888765432111 1233455666666554 33344444444444321000 11
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHcCC--C----chhHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhH
Q 005161 505 ITLNVMLDIYGKAKLFKRVRKLFSMAKKLGL--V----DVISYNTIIAAYGQNKNLESMSSTVQEMQFD--GFSVSLEAY 576 (711)
Q Consensus 505 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 576 (711)
..-..++..|...|++.+|.+++..+.+.-. . -...+-.-++.|...++..++...+...... .+.+++..-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 1223566777778888888777776665322 1 1223444556677777777777777665433 122222222
Q ss_pred HH----HHHHHH-hcCCHHHHHHHHHHHH
Q 005161 577 NS----MLDAYG-KEGQMENFKNVLRRMK 600 (711)
Q Consensus 577 ~~----l~~~~~-~~g~~~~A~~~~~~~~ 600 (711)
.. -...+. ..+++..|...|-+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 11 122344 5677777777666554
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.47 E-value=17 Score=25.99 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHH
Q 005161 99 LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFL 178 (711)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 178 (711)
..++|..+-+.+...+. ...+-..-+..+...|+|++|..+.+..- -||...|..|.. .+.|--+.+...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555544332 22222233445556666666665444332 456666655544 25566666666665
Q ss_pred HHHhcC
Q 005161 179 SIKDVG 184 (711)
Q Consensus 179 ~~~~~~ 184 (711)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555543
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=77.16 E-value=69 Score=32.82 Aligned_cols=49 Identities=10% Similarity=-0.043 Sum_probs=20.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005161 375 VMGMFTEAEKLYLNLKSSGIRLDLIAFTVVVRMYVKAGSLKDACAVLETM 424 (711)
Q Consensus 375 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 424 (711)
+.|+++.+...|..+..... ......-=+.+++...|+.++|..+|..+
T Consensus 297 r~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555555555544433210 01111122233344445555555555554
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.87 E-value=18 Score=25.93 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHH
Q 005161 99 LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFL 178 (711)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 178 (711)
..++|..+-+.+...+. ...+-..-+..+...|+|++|..+.+..- -||...|..|... +.|--+.+...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 34555555555444332 22222233444555666666655444332 3555555554442 4555555555555
Q ss_pred HHHhcC
Q 005161 179 SIKDVG 184 (711)
Q Consensus 179 ~~~~~~ 184 (711)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555433
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.65 E-value=16 Score=30.59 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=47.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhcchHHHHHHHHHHHHHhCcCC
Q 005161 656 AGMVEDAVGLVKEMRENGIEPDK-ITYTNMITALQRNDKFLEAIKWSLWMKQIGLQD 711 (711)
Q Consensus 656 ~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~ 711 (711)
.++..++..+|..|...|+.-.. .-|......+...|++++|.++++.-++++=+|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 55577999999999999888765 677888888999999999999999988877554
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=75.65 E-value=23 Score=28.10 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 005161 625 NEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD 677 (711)
Q Consensus 625 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 677 (711)
+++..+|..|..+|+--. ...|...+..+...|++++|.++|+.-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 448888888888877665 66788888888899999999999999888777773
No 273
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.43 E-value=12 Score=36.77 Aligned_cols=63 Identities=11% Similarity=0.065 Sum_probs=37.6
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 50 VATFGMLMGLYKKSWNVEEAEFAFNQMRKLG--LVCE---SAYSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
...++.+++.|...+.++.|..+..+..-.. ..+. .-+..+++++.-.++|.+|.+.+.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566667777777777777777777664221 1111 1234456677777777777777766554
No 274
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.00 E-value=59 Score=29.66 Aligned_cols=109 Identities=8% Similarity=-0.041 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHH----HHHHHHhCCCCccHHHHHHHHHHH
Q 005161 439 DMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSR----VFDEMLQHGFTPNIITLNVMLDIY 514 (711)
Q Consensus 439 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~ 514 (711)
++..-|.+.+++++|++++..-.. .+.+.|+...|-+ +.+...+.+.+++......++..+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 334457788889999887654322 2344555555444 445555677888888888888777
Q ss_pred hccCcH-----HHHHHHHHHHHHcCC---CchhHHHHHHHHHHhcCCHHHHHHHHH
Q 005161 515 GKAKLF-----KRVRKLFSMAKKLGL---VDVISYNTIIAAYGQNKNLESMSSTVQ 562 (711)
Q Consensus 515 ~~~~~~-----~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 562 (711)
.....- +-..+...-..+.+. .++..+..+...|.+.+++.+|...|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 654321 112222222233322 477888888888888888888777653
No 275
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=71.67 E-value=44 Score=28.03 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHcCCCchh--------HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005161 66 VEEAEFAFNQMRKLGLVCES--------AYSAMITIYTRLSLYEKAEEVIRLIRE 112 (711)
Q Consensus 66 ~~~A~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 112 (711)
++.|+.+|+.+.+..+.+.. .-...+..|.++|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 55677777777665543211 112334455666666666666665544
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=71.13 E-value=29 Score=27.94 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 005161 625 NEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD 677 (711)
Q Consensus 625 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 677 (711)
+++..+|..|...|+--. ...|...+..+...|++.+|.++|+.-++.+-.|-
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 347778888888877665 66788888888899999999999999888777774
No 277
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=70.12 E-value=1e+02 Score=31.60 Aligned_cols=201 Identities=5% Similarity=-0.064 Sum_probs=103.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHH
Q 005161 412 GSLKDACAVLETMEKQKDIEPDAYL--YCDMLRIYQQCGMLDKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELS 489 (711)
Q Consensus 412 ~~~~~A~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 489 (711)
.+.+.|...+..........+.... +..+.......+...++...+....... .+.....-.+....+.++++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 4778888888887544433222221 1222222223343455666666544432 33333444444455678999998
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005161 490 RVFDEMLQHGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFDGF 569 (711)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 569 (711)
..|..+..... ......--+..++...|+.++|..+|..+.+. . ..|..+.. .+.|..-.. .....
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~--~--~fYg~lAa--~~Lg~~~~~-------~~~~~ 371 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ--R--GFYPMVAA--QRIGEEYEL-------KIDKA 371 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--C--SHHHHHHH--HHTTCCCCC-------CCCCC
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC--C--ChHHHHHH--HHcCCCCCC-------CCCCC
Confidence 88888765321 12333344556677788888898888887752 1 22332221 122211000 00000
Q ss_pred CCC-hh-----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 005161 570 SVS-LE-----AYNSMLDAYGKEGQMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVL 631 (711)
Q Consensus 570 ~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 631 (711)
.+. .. .-...+..+...|....|...+..+.+. .+......+.......|..+.++...
T Consensus 372 ~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 000 00 0112344566788888888888887753 23333334444445566666665444
No 278
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.65 E-value=70 Score=29.50 Aligned_cols=112 Identities=14% Similarity=0.129 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhcCCCccHhhHHHHHHHHHccCChhhHHHHH----HHHhhcCCCCcHHHHHHHH
Q 005161 295 SCSILVMAYVKHGLIDDAMKVLGDKRWKDTVFEDNLYHLLICSCKDSGHLANAVKIY----SHMHICDGKPNLHIMCTMI 370 (711)
Q Consensus 295 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~ 370 (711)
.+.++..-|.+.+++++|++++..- ...+.+.|+...|.++. +-+.+.+++++......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3455666788888999888876432 22333445554444443 3344556677776666666
Q ss_pred HHHHccCCHH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005161 371 DTYSVMGMFT-EAEKLYLNLK----SSG--IRLDLIAFTVVVRMYVKAGSLKDACAVL 421 (711)
Q Consensus 371 ~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 421 (711)
..+......+ .-..+.+.++ +.| ..-|+.....+...|.+.+++.+|...|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6655444211 1111222221 111 2346666677777888888888877766
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=67.41 E-value=33 Score=27.16 Aligned_cols=52 Identities=13% Similarity=0.014 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhcchHHHHHHHHHHHHHhCcCC
Q 005161 660 EDAVGLVKEMRENGIEPDK-ITYTNMITALQRNDKFLEAIKWSLWMKQIGLQD 711 (711)
Q Consensus 660 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~ 711 (711)
+++.++|+.|..+|+--.. .-|......+...|++++|.++++.-++++=+|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4489999999998888765 677888888999999999999999988877554
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.14 E-value=33 Score=30.67 Aligned_cols=54 Identities=15% Similarity=0.006 Sum_probs=27.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHh--HHHHHHHHhccCChHHHHHHHHHHHH-cCCCCC
Q 005161 620 EQGWINEVVGVLTELKECGLRPDLCS--YNTLIKAYGIAGMVEDAVGLVKEMRE-NGIEPD 677 (711)
Q Consensus 620 ~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~ 677 (711)
..++.....++++.+.+.|..++... -.+.+...+..|+.+- ++.+.+ .|..++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~~g~~~~ 247 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL----VQRLLEQEHIEIN 247 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHH----HHHHHHSSSCCTT
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH----HHHHHhccCCCcc
Confidence 34554555666677777776655321 1223344445566543 344444 455554
No 281
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=63.46 E-value=1e+02 Score=29.27 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 005161 364 HIMCTMIDTYSVMGMFTEAEKLYLNLK 390 (711)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 390 (711)
.+...+...|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445556666667777666666665554
No 282
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=62.70 E-value=48 Score=26.68 Aligned_cols=37 Identities=8% Similarity=-0.100 Sum_probs=23.3
Q ss_pred CCCCcchH--HHHHHHHHhcchHHHHHHHHHHHHHhCcC
Q 005161 674 IEPDKITY--TNMITALQRNDKFLEAIKWSLWMKQIGLQ 710 (711)
Q Consensus 674 ~~p~~~~~--~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 710 (711)
..|...+| ....+-|...|..++...++..+++++++
T Consensus 202 ~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 202 HVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp STTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 55654333 34455567777777777777777776653
No 283
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=62.46 E-value=91 Score=28.38 Aligned_cols=93 Identities=12% Similarity=0.164 Sum_probs=51.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---CCCCH---HHHHHHHHHH------------hhc-C-----CHHHHHHHHHHHHHCC
Q 005161 583 YGKEGQMENFKNVLRRMKETS---CTFDH---YTYNIMIDIY------------GEQ-G-----WINEVVGVLTELKECG 638 (711)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~---~~~~~---~~~~~l~~~~------------~~~-g-----~~~~A~~~~~~~~~~~ 638 (711)
+...|++++|...|+.++..- +..+. .-...++..| .+. + +.....++---+....
T Consensus 112 ~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELAAYFT~c~ 191 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMAAYFTHSN 191 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHhccCC
Confidence 357899999999999887531 11111 1122222221 111 1 1122233333333344
Q ss_pred CCCC--hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 005161 639 LRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD 677 (711)
Q Consensus 639 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 677 (711)
+.|. .-+...-+....+.+++..|-.+.+++++ +.|+
T Consensus 192 Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLe--l~p~ 230 (320)
T 3mkr_B 192 LQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLE--LGPK 230 (320)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH--TCCC
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 4554 33455556777788888888888888888 4454
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=61.60 E-value=1e+02 Score=28.73 Aligned_cols=66 Identities=11% Similarity=0.126 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCCh
Q 005161 192 YRSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYED--EEGAVNTLDDMLNMGCQHS 258 (711)
Q Consensus 192 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 258 (711)
...++.-|...|+.++|...++++..-... ...+...+..+..+.++ .+....++..+...+.-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 355677777888888888888887532111 12233334444444433 3456667777766665544
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.76 E-value=43 Score=26.99 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhcchHHHHHHHHHHHHHhCcCC
Q 005161 660 EDAVGLVKEMRENGIEPDK-ITYTNMITALQRNDKFLEAIKWSLWMKQIGLQD 711 (711)
Q Consensus 660 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~ 711 (711)
+++.++|+.|..+|+--.. ..|......+...|++.+|.++++.-++++-+|
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3477899999999888765 667788888899999999999999988887654
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.35 E-value=37 Score=30.27 Aligned_cols=15 Identities=7% Similarity=-0.050 Sum_probs=6.8
Q ss_pred HHHccCCHHHHHHHH
Q 005161 59 LYKKSWNVEEAEFAF 73 (711)
Q Consensus 59 ~~~~~g~~~~A~~~~ 73 (711)
..++.|+++....++
T Consensus 11 ~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 11 KAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 334555554444333
No 287
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=58.77 E-value=76 Score=26.17 Aligned_cols=131 Identities=9% Similarity=0.011 Sum_probs=66.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhh-cCCHHHHHHHHHHHHHCCCCCChHhH--H-HHHHHH
Q 005161 581 DAYGKEGQMENFKNVLRRMKETSCTFDHY---TYNIMIDIYGE-QGWINEVVGVLTELKECGLRPDLCSY--N-TLIKAY 653 (711)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~--~-~l~~~~ 653 (711)
...+..|+.+.-.++.+.+++.|..++.. -++.|..++.. ..+.....++.+.+++.|..++.... . +.+...
T Consensus 43 h~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A 122 (186)
T 3t8k_A 43 YDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122 (186)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGG
T ss_pred HHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHH
Confidence 33344455555555666666665555432 12223222221 23344556677777777776653211 1 233333
Q ss_pred hccCCh-HHHHHHHHHHHH-cCCCCCcchH--HHHHHHHHhcchHHHHHHHHHHHHHhCcCC
Q 005161 654 GIAGMV-EDAVGLVKEMRE-NGIEPDKITY--TNMITALQRNDKFLEAIKWSLWMKQIGLQD 711 (711)
Q Consensus 654 ~~~g~~-~~A~~~~~~~~~-~~~~p~~~~~--~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~ 711 (711)
+..|.. ..-..+++-+.+ .|..++.... .+-+....+.|+.+-..-+.+.+++.++||
T Consensus 123 ~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 123 FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp GGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred HHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 333433 344567777777 7877754221 122233455666655555555667777664
No 288
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=58.47 E-value=82 Score=26.46 Aligned_cols=154 Identities=12% Similarity=-0.026 Sum_probs=73.4
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLN 127 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 127 (711)
++.......+..+.+.|+.+ +...+..+... + +.......+.++...+..+ +...+..+... ++.......+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~-~-~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~ 103 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALKD-E-DAWVRRAAADALGQIGDER-AVEPLIKALKD---EDGWVRQSAAV 103 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC-S-CHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC-C-CHHHHHHHHHHHHhhCCHH-HHHHHHHHHcC---CCHHHHHHHHH
Confidence 46666666666666666533 22222222221 1 2334444445555555432 33333333322 45556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 005161 128 AYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEGWGRAGNYRE 207 (711)
Q Consensus 128 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 207 (711)
++.+.++.+ +...+..+.+ .++..+-...+.++.+.|+.+ +...+..+.+ .++...-...+.++.+.+. ..
T Consensus 104 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~ 174 (211)
T 3ltm_A 104 ALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ER 174 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hh
Confidence 666666643 3333333443 345555555566666555543 3333333333 2455555555555555554 33
Q ss_pred HHHHHHHHHh
Q 005161 208 AKWYYKELKH 217 (711)
Q Consensus 208 A~~~~~~~~~ 217 (711)
+...+..+..
T Consensus 175 ~~~~L~~~l~ 184 (211)
T 3ltm_A 175 VRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=55.74 E-value=43 Score=28.53 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHCCCCCC-hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 005161 625 NEVVGVLTELKECGLRPD-LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEP 676 (711)
Q Consensus 625 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 676 (711)
+++..+|..|...|+--. ...|...+..+...|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466778888887776555 5667777777788888888888888877766666
No 290
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=55.33 E-value=60 Score=29.56 Aligned_cols=53 Identities=9% Similarity=-0.031 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 005161 623 WINEVVGVLTELKECGLRPD--LCSYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPD 677 (711)
Q Consensus 623 ~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 677 (711)
+..+..++---+....+.|. .-+...-+....+.+++..|-.+.+++++ +.|+
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLe--l~p~ 239 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLK--IISS 239 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCS
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 44555555555555556665 34566667788899999999999999998 4454
No 291
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=54.62 E-value=87 Score=28.52 Aligned_cols=222 Identities=12% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCChhHHHHHHHHHHhcC
Q 005161 193 RSMIEGWGRAGNYREAKWYYKELKHLGYKPNASNLYTLINLHAKYEDEEGAVNTLDDMLNMGCQHSSILGTLLQAYEKAG 272 (711)
Q Consensus 193 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 272 (711)
..+|.-|...|+.++|...++++......|.......-...-.+....+.+-.++..+...-..+..+...+...+....
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ll~~ld 86 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLP 86 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q ss_pred C----CCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCC--HHHHHHHHHhhh---------------hcCCCccHhh-
Q 005161 273 R----TDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGL--IDDAMKVLGDKR---------------WKDTVFEDNL- 330 (711)
Q Consensus 273 ~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~---------------~~~~~~~~~~- 330 (711)
+ ...|...+-..+.+-+.-+......+.....+... -.+++..-+.+. ..+..+....
T Consensus 87 Dl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~eelk 166 (307)
T 2zu6_B 87 ELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLV 166 (307)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHHHH
Q ss_pred --HHHHHHHHHccCChhhHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005161 331 --YHLLICSCKDSGHLANAVKIYSHMHICDGKPNLHIMCTMIDTYSVMGMF--TEAEKLYLNLKSSGIRLDLIAFTVVVR 406 (711)
Q Consensus 331 --~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~ 406 (711)
...++.-|...|+.++|.+.++++... ......+...+..++-+.++. +....++..+.+.|+-+.......+..
T Consensus 167 kki~~lL~EY~~~~D~~EA~~ci~EL~~p-~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~ 245 (307)
T 2zu6_B 167 KEIDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYER 245 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCG-GGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCC-cchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_pred HHHHcCChH
Q 005161 407 MYVKAGSLK 415 (711)
Q Consensus 407 ~~~~~~~~~ 415 (711)
.+....+..
T Consensus 246 vl~~l~Dl~ 254 (307)
T 2zu6_B 246 IYNEIPDIN 254 (307)
T ss_dssp HHHHHHHHH
T ss_pred HHHhccHhh
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.35 E-value=41 Score=29.21 Aligned_cols=90 Identities=12% Similarity=0.047 Sum_probs=44.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 005161 579 MLDAYGKEGQMENFKNVLRRMKET--SCTF----DHYTYNIMIDIYGEQGWINEVVGVLTELKECGLRPDLCSYNTLIKA 652 (711)
Q Consensus 579 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 652 (711)
-++.+....++++|..++++..+. +.++ +.......+..-.....-.-+..+.+++ .. .+++......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 366777778888888887776541 2221 1111111222222211222233333333 22 3445555555666
Q ss_pred HhccCChHHHHHHHHHHHH
Q 005161 653 YGIAGMVEDAVGLVKEMRE 671 (711)
Q Consensus 653 ~~~~g~~~~A~~~~~~~~~ 671 (711)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 6777777777777766653
No 293
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=49.48 E-value=2.4e+02 Score=29.12 Aligned_cols=16 Identities=6% Similarity=-0.124 Sum_probs=10.8
Q ss_pred HccCCHHHHHHHHHHH
Q 005161 480 ARALPIDELSRVFDEM 495 (711)
Q Consensus 480 ~~~~~~~~a~~~~~~~ 495 (711)
...|+++.|++.++++
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 5667777777666654
No 294
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.19 E-value=58 Score=27.78 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhcchHHHHHHHHHHHHHhCcCC
Q 005161 660 EDAVGLVKEMRENGIEPDK-ITYTNMITALQRNDKFLEAIKWSLWMKQIGLQD 711 (711)
Q Consensus 660 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~ 711 (711)
+++..+|..|...|+--.. .-|......+...|++.+|.++++.-++++=+|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5788999999999888765 677888888999999999999999988877554
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.59 E-value=2.3e+02 Score=28.08 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CccH--hhH-HHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 005161 189 ETTYRSMIEGWGRAGNYREAKWYYKELKHLGY-KPNA--SNL-YTLINLHAKYEDEEGAVNTLDDMLNMGCQH 257 (711)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 257 (711)
...+|.+++.|...+.++.|..+..+..--.. .++. .+| ..+...+.-.+++.+|.+.+..+....|..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 44578888899999999999999888742100 1111 122 334567778889999998888888766543
No 296
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=44.52 E-value=1.3e+02 Score=24.93 Aligned_cols=15 Identities=0% Similarity=-0.148 Sum_probs=8.6
Q ss_pred CChHHHHHHHHHHhH
Q 005161 29 GCVELGAKWFHMMLE 43 (711)
Q Consensus 29 ~~~~~a~~~~~~~~~ 43 (711)
++|.+...+++.++.
T Consensus 39 ~dFrq~rdi~eall~ 53 (211)
T 3bqo_A 39 EDFRRTRNSAEAIIH 53 (211)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555566666655
No 297
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=43.87 E-value=73 Score=26.79 Aligned_cols=66 Identities=9% Similarity=-0.007 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhHcCCCCCHh-------hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhc
Q 005161 32 ELGAKWFHMMLECDVQPNVA-------TFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRL 97 (711)
Q Consensus 32 ~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (711)
+.|+-+|+.+.+.-.-++.. .-...+..|.+.|.+++|.++|+++...++.+...-..|..+-.+.
T Consensus 89 ESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~K 161 (235)
T 3bu8_A 89 ESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREK 161 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc
Confidence 56777888776653211211 1124456788999999999999999887665554555555443333
No 298
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.75 E-value=1.4e+02 Score=25.84 Aligned_cols=90 Identities=13% Similarity=0.055 Sum_probs=42.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 005161 125 MLNAYSQQGKLEEAELVLVSMREA--GFSP----NIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEG 198 (711)
Q Consensus 125 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 198 (711)
-++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 355666677777777666655432 1111 001111122222222222223333333322 2344455556667
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 005161 199 WGRAGNYREAKWYYKELKH 217 (711)
Q Consensus 199 ~~~~g~~~~A~~~~~~~~~ 217 (711)
+.+.|+.++|.++|=+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7777777777777755543
No 299
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=41.85 E-value=1.8e+02 Score=25.66 Aligned_cols=177 Identities=6% Similarity=-0.075 Sum_probs=71.4
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHHHHH
Q 005161 48 PNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTRLSLY----EKAEEVIRLIREDKVVPNLENWL 123 (711)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~ 123 (711)
++..+....+.++.+.|..+ +...+..+... + +.......+.++.+.|.. .....++......+ ++.....
T Consensus 35 ~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~d-~-~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d--~~~~vr~ 109 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQD-AVRLAIEFCSD-K-NYIRRDIGAFILGQIKICKKCEDNVFNILNNMALND--KSACVRA 109 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCHH-HHHHHHHHHTC-S-SHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHC--SCHHHHH
T ss_pred CCHHHHHHHHHHHHccCCch-HHHHHHHHHcC-C-CHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcC--CCHHHHH
Confidence 45555555556666666433 33333333321 1 122333344444444432 22223333211111 3444444
Q ss_pred HHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 005161 124 VMLNAYSQQGK-----LEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAAQRLFLSIKDVGLEPDETTYRSMIEG 198 (711)
Q Consensus 124 ~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 198 (711)
..+.++.+.+. ...+...+..+.. .++..+-...+.++...|+.+ +...+..+.. .++...-...+.+
T Consensus 110 ~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~a 182 (280)
T 1oyz_A 110 TAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFA 182 (280)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHH
Confidence 55555554431 2333444433333 345555555555565555532 3333333333 2444444444444
Q ss_pred HHhcC-CHHHHHHHHHHHHhcCCCccHhhHHHHHHHHHcCCC
Q 005161 199 WGRAG-NYREAKWYYKELKHLGYKPNASNLYTLINLHAKYED 239 (711)
Q Consensus 199 ~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 239 (711)
+...| ....+...+..+.. .++..+-...+.++...|+
T Consensus 183 L~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 183 ININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp HHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTC
T ss_pred HHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCC
Confidence 44433 12233333333332 2233333444444444443
No 300
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=40.45 E-value=1.3e+02 Score=23.64 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=33.2
Q ss_pred HHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCC
Q 005161 250 MLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGL 308 (711)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 308 (711)
+.+.|...+.-...++..+...+..-.|.++++.+....+..+..+....+..+...|-
T Consensus 18 l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 44455555555555666666666666677777766665555555555555555555544
No 301
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.12 E-value=1.2e+02 Score=23.11 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=7.7
Q ss_pred HHHHhccCcHHHHHHHHHH
Q 005161 511 LDIYGKAKLFKRVRKLFSM 529 (711)
Q Consensus 511 ~~~~~~~~~~~~a~~~~~~ 529 (711)
+.-|...|+.++|.+.++.
T Consensus 14 l~EY~~~~D~~Ea~~cl~e 32 (129)
T 2nsz_A 14 LKEYLLSGDISEAEHCLKE 32 (129)
T ss_dssp HHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 3333334444444444433
No 302
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.72 E-value=27 Score=21.47 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhcch--HHHHHHHHHHH
Q 005161 664 GLVKEMRENGIEPDKITYTNMITALQRNDK--FLEAIKWSLWM 704 (711)
Q Consensus 664 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~A~~~~~~m 704 (711)
+.++.+.+-|+.++ ....++...|. .+.|.+|+.+|
T Consensus 11 qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 34455555555443 23344455555 66777776665
No 303
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=39.58 E-value=1.1e+02 Score=23.93 Aligned_cols=56 Identities=9% Similarity=0.134 Sum_probs=26.0
Q ss_pred HcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 78 KLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
+.+.........++..+...+.+-.|.++++.+.+.++..+..|....+..+...|
T Consensus 15 ~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 15 ETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33433334444444444444444555555555555444444444444444444443
No 304
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=39.22 E-value=1.2e+02 Score=27.17 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=5.4
Q ss_pred ccCChHHHHHHHH
Q 005161 166 KVSNMEAAQRLFL 178 (711)
Q Consensus 166 ~~~~~~~a~~~~~ 178 (711)
..|+.+-+.-+++
T Consensus 170 ~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 170 KNGHVDMMILLLD 182 (285)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcChHHHHHHHHH
Confidence 3444444443333
No 305
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=38.52 E-value=1.1e+02 Score=26.13 Aligned_cols=28 Identities=4% Similarity=-0.001 Sum_probs=15.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhHcCCCC
Q 005161 21 LIYACNKRGCVELGAKWFHMMLECDVQP 48 (711)
Q Consensus 21 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 48 (711)
.|...+..|+.+....+++.+.+.+..+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3445556677666666666555554433
No 306
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.24 E-value=1.2e+02 Score=23.87 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=26.7
Q ss_pred HcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 78 KLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
+.+.....-...++..+...+.+-.|.++++.+.+.++..+..|....+..+...|
T Consensus 20 ~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 20 KNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444444455555554455555556655555544444444444444444444
No 307
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=37.71 E-value=1.4e+02 Score=25.45 Aligned_cols=14 Identities=7% Similarity=-0.272 Sum_probs=6.0
Q ss_pred HccCCHHHHHHHHH
Q 005161 374 SVMGMFTEAEKLYL 387 (711)
Q Consensus 374 ~~~~~~~~a~~~~~ 387 (711)
.+.|+.+-+..+++
T Consensus 218 ~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 218 KQRKNVWMINHLQE 231 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 34444444444333
No 308
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=37.03 E-value=2.6e+02 Score=25.91 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 122 WLVMLNAYSQQGKLEEAELVLVSMR 146 (711)
Q Consensus 122 ~~~l~~~~~~~~~~~~a~~~~~~~~ 146 (711)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4566777777888888888777765
No 309
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=36.66 E-value=1.3e+02 Score=23.60 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=27.8
Q ss_pred HCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCC
Q 005161 252 NMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGL 308 (711)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 308 (711)
+.|...+.-...++..+...+ .-.|.++++.+....+..+..+...-+..+...|-
T Consensus 12 ~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 12 QRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp TTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 344444444444444444444 55566666665555554454444444444544443
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.92 E-value=1.6e+02 Score=23.06 Aligned_cols=59 Identities=10% Similarity=0.080 Sum_probs=33.8
Q ss_pred HHHCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcCC
Q 005161 250 MLNMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHGL 308 (711)
Q Consensus 250 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 308 (711)
+.+.|...+.....++..+...+..-.|.++++.+....+..+..+....+..+...|-
T Consensus 13 l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 44455555555555566665556666677777666665555555555555555555544
No 311
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=35.92 E-value=1.7e+02 Score=23.47 Aligned_cols=57 Identities=5% Similarity=-0.027 Sum_probs=29.7
Q ss_pred HCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHhhhc--cCCcchhHHHHHHHHHHhcCC
Q 005161 252 NMGCQHSSILGTLLQAYEKAGRTDNVPRILKGSLYQ--HVLFNLTSCSILVMAYVKHGL 308 (711)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 308 (711)
+.|...+.-...++..+...++.-.|.++++.+... ++..+..+...-+..+...|-
T Consensus 26 ~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344444444455555555555556666666665554 444444444444455555543
No 312
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.75 E-value=95 Score=24.63 Aligned_cols=18 Identities=6% Similarity=-0.066 Sum_probs=7.3
Q ss_pred HHHhccCcHHHHHHHHHH
Q 005161 512 DIYGKAKLFKRVRKLFSM 529 (711)
Q Consensus 512 ~~~~~~~~~~~a~~~~~~ 529 (711)
.-|...|+.++|.+.++.
T Consensus 17 ~EY~~~~D~~EA~~cl~E 34 (152)
T 2ion_A 17 KEYLLSGDISEAEHCLKE 34 (152)
T ss_dssp HHHHHHCCHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHH
Confidence 333334444444444433
No 313
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.54 E-value=1.5e+02 Score=22.81 Aligned_cols=55 Identities=15% Similarity=0.130 Sum_probs=24.6
Q ss_pred CCCCChhHHHHHHHHHHhcC-CCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcC
Q 005161 253 MGCQHSSILGTLLQAYEKAG-RTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHG 307 (711)
Q Consensus 253 ~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 307 (711)
.|...+.....++..+...+ ..-.|.++++.+....+..+..+...-+..+...|
T Consensus 12 ~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 12 AGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp TTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34444444444444444444 44555555555554444444444444444444443
No 314
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.49 E-value=2.8e+02 Score=25.89 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=43.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC---hHhHHHHHHHHhccCC--hHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005161 611 YNIMIDIYGEQGWINEVVGVLTELKECGLRPD---LCSYNTLIKAYGIAGM--VEDAVGLVKEMRENGIEPDKITYTNMI 685 (711)
Q Consensus 611 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~ 685 (711)
...++.-|...||.++|.+.++++.. |. ..+...+..++-+.++ .+...+++..+.+.|+-+.......+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~----p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV----PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC----CcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 46677777888888888888887742 32 2233444445554433 345667777777666555443333333
Q ss_pred HHH
Q 005161 686 TAL 688 (711)
Q Consensus 686 ~~~ 688 (711)
+.+
T Consensus 296 ~vl 298 (358)
T 3eiq_C 296 RIY 298 (358)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 315
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=35.42 E-value=3.1e+02 Score=26.31 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=24.7
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCChH---hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc
Q 005161 619 GEQGWINEVVGVLTELKECGLRPDLC---SYNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDK 678 (711)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 678 (711)
+..|+.+- .+.+.+.|..++.. -.+. +...+..|+. ++++.+.+.|..|+.
T Consensus 319 ~~~g~~~~----v~~Ll~~gad~n~~~~~g~t~-L~~A~~~g~~----~iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 319 SHYGNIKL----VKFLLQHQADVNAKTKLGYSP-LHQAAQQGHT----DIVTLLLKNGASPNE 372 (437)
T ss_dssp HHSSCSHH----HHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCH----HHHHHHHHTTCCSCC
T ss_pred HHcCcHHH----HHHHHhcCCCCCCCCCCCCCH-HHHHHHCChH----HHHHHHHHCcCCCCC
Confidence 34566543 34444555555422 1222 3333345554 345556667777753
No 316
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.68 E-value=1.1e+02 Score=23.68 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=25.2
Q ss_pred cCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 79 LGLVCESAYSAMITIYTRLS-LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 79 ~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
.+.........++..+...+ .+-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 12 ~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 12 AGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp TTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33333334444444444444 44455555555555544444444444444444433
No 317
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.66 E-value=1.8e+02 Score=23.24 Aligned_cols=51 Identities=6% Similarity=-0.147 Sum_probs=27.3
Q ss_pred hcCChHHHHHHHHHHhHcCCCC--CHhhHHHHHH-H-----HHccCCHHHHHHHHHHHH
Q 005161 27 KRGCVELGAKWFHMMLECDVQP--NVATFGMLMG-L-----YKKSWNVEEAEFAFNQMR 77 (711)
Q Consensus 27 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~ 77 (711)
..|++-+|-++++.+-.....+ +...|..||+ + ..+.|+...|..++.+..
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3466666666666666554344 3444444554 1 123556666666655544
No 318
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=33.47 E-value=28 Score=22.07 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005161 101 EKAEEVIRLIREDKVVPNLENWLVMLNAY 129 (711)
Q Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 129 (711)
++|...|.+|+...-.++..+|...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555555555443333445555555555
No 319
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=33.26 E-value=51 Score=25.69 Aligned_cols=44 Identities=7% Similarity=-0.093 Sum_probs=22.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccC
Q 005161 21 LIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSW 64 (711)
Q Consensus 21 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 64 (711)
++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34444444444555555555555544445555544555555444
No 320
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=32.94 E-value=50 Score=28.37 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=24.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhH--HHHHHHHHccCCHHHHHHHHH
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATF--GMLMGLYKKSWNVEEAEFAFN 74 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~ 74 (711)
|...++.|+.+.... +++.|..++.... ...+...+..|+.+-+.-+++
T Consensus 13 l~~A~~~g~~~~~~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 13 IVKATQYGIYERCRE----LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCChHHHHH----HHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 334556777655444 4444544332211 124445566777765554443
No 321
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.91 E-value=1.2e+02 Score=23.98 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=27.1
Q ss_pred HcCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005161 78 KLGLVCESAYSAMITIYTRLS-LYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGK 134 (711)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 134 (711)
+.+.....-...++..+...+ .+-.|.++++.+.+.++..+..|....+..+...|-
T Consensus 10 ~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 10 DAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 334333334444444444444 444555555555555544444444444444444443
No 322
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.48 E-value=99 Score=24.22 Aligned_cols=48 Identities=10% Similarity=0.168 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005161 85 SAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQG 133 (711)
Q Consensus 85 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (711)
.-...++..+...+ .-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 19 ~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 19 PQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 33344444444444 4455555555555444444444444444444433
No 323
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.15 E-value=1.5e+02 Score=23.44 Aligned_cols=24 Identities=17% Similarity=0.483 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 005161 401 FTVVVRMYVKAGSLKDACAVLETM 424 (711)
Q Consensus 401 ~~~l~~~~~~~~~~~~A~~~~~~~ 424 (711)
...++.-|...++.++|...++++
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 445566666666777777666666
No 324
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.47 E-value=1.8e+02 Score=22.16 Aligned_cols=24 Identities=17% Similarity=0.483 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 005161 401 FTVVVRMYVKAGSLKDACAVLETM 424 (711)
Q Consensus 401 ~~~l~~~~~~~~~~~~A~~~~~~~ 424 (711)
...++.-|...|+.++|.+.++++
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 345556666666666666666666
No 325
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.29 E-value=1.6e+02 Score=23.23 Aligned_cols=35 Identities=9% Similarity=0.062 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHhhhccCCcchhHHHHHHHHHHhcC
Q 005161 273 RTDNVPRILKGSLYQHVLFNLTSCSILVMAYVKHG 307 (711)
Q Consensus 273 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 307 (711)
..-.|.++++.+....+..+..+....+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34444444444444433333333333334444433
No 326
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.02 E-value=1.4e+02 Score=25.58 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=9.9
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 005161 130 SQQGKLEEAELVLVSMREAG 149 (711)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~ 149 (711)
++.|+.+.+..+++.+.+.+
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 34455555555555444443
No 327
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.14 E-value=1.6e+02 Score=23.64 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=28.8
Q ss_pred HcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 005161 78 KLGLVCESAYSAMITIYTRLSLYEKAEEVIRLIRED--KVVPNLENWLVMLNAYSQQGK 134 (711)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 134 (711)
+.+.....-...++..+...+.+-.|.++++.+.+. ++..+..|...-+..+...|-
T Consensus 26 ~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 334444444455555555555555566666655554 444444444444444544443
No 328
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=28.72 E-value=73 Score=26.37 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005161 88 SAMITIYTRLSLYEKAEEVIRLIRED 113 (711)
Q Consensus 88 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 113 (711)
...+..|.++|.+++|.+++++.-..
T Consensus 121 ~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 121 IQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcC
Confidence 44567788888888888888875443
No 329
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.58 E-value=2.6e+02 Score=23.35 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=9.2
Q ss_pred CCHHHHHHHHHHHHhcC
Q 005161 448 GMLDKLSYLYYKILKSG 464 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~~ 464 (711)
.+.+.|+-++-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 45555555555555555
No 330
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=27.85 E-value=99 Score=20.12 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=24.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 005161 53 FGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITIYTR 96 (711)
Q Consensus 53 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (711)
++.++.++++..-++.+.-.++++.+.+..+...|..-++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 44555555555555666666666666665555555555554444
No 331
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=26.69 E-value=1.2e+02 Score=18.92 Aligned_cols=9 Identities=33% Similarity=0.505 Sum_probs=1.1
Q ss_pred HhcCCHHHH
Q 005161 130 SQQGKLEEA 138 (711)
Q Consensus 130 ~~~~~~~~a 138 (711)
...|++++|
T Consensus 51 mNrG~Yq~A 59 (61)
T 3ph0_C 51 MNQGDYQRA 59 (61)
T ss_dssp HHC------
T ss_pred HccchHhHh
Confidence 334444433
No 332
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.60 E-value=2.8e+02 Score=23.09 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCC
Q 005161 448 GMLDKLSYLYYKILKSGITWN 468 (711)
Q Consensus 448 ~~~~~a~~~~~~~~~~~~~~~ 468 (711)
.+.+.|+-++-+|++.|-.|.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555555555555554443
No 333
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.76 E-value=92 Score=24.19 Aligned_cols=49 Identities=12% Similarity=0.218 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGK 134 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 134 (711)
-...++..+...+.+-.|.++++.+.+.++..+..|....+..+...|-
T Consensus 15 qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 15 QRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3445555555555566666777766666655565555555555555543
No 334
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=25.32 E-value=4.8e+02 Score=25.39 Aligned_cols=70 Identities=7% Similarity=-0.098 Sum_probs=30.3
Q ss_pred CCCCccHHHHHHHHHHHhccCcHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005161 498 HGFTPNIITLNVMLDIYGKAKLFKRVRKLFSMAKKLGLVDVISYNTIIAAYGQNKNLESMSSTVQEMQFD 567 (711)
Q Consensus 498 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 567 (711)
.|++--...|..-++.+...|++++|.++-....+.-..++.+.+.+-..-...|+..-.+.+|..+.+.
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~ 424 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQ 424 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhcc
Confidence 3344334444444555555666666665554433322233444433332222333333344444444443
No 335
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.28 E-value=3.5e+02 Score=29.64 Aligned_cols=47 Identities=4% Similarity=-0.106 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHhhc
Q 005161 120 ENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIV----AYNTLMTGYGK 166 (711)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 166 (711)
.-|..++..+-+.+.++.+.++-+..++.--+.|.. .|+.+.++.+.
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 357888888889999999988888888653222333 45555555543
No 336
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.09 E-value=1.2e+02 Score=24.87 Aligned_cols=15 Identities=20% Similarity=0.014 Sum_probs=7.4
Q ss_pred HHHHHHHHhcCCCcc
Q 005161 209 KWYYKELKHLGYKPN 223 (711)
Q Consensus 209 ~~~~~~~~~~~~~~~ 223 (711)
.++++.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 445555555554443
No 337
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.07 E-value=1.2e+02 Score=23.26 Aligned_cols=43 Identities=5% Similarity=-0.170 Sum_probs=22.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccC
Q 005161 22 IYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSW 64 (711)
Q Consensus 22 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 64 (711)
+..+...+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344444445555566665555544445555555555555544
No 338
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.59 E-value=61 Score=28.47 Aligned_cols=51 Identities=10% Similarity=-0.070 Sum_probs=25.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHh--hccCChHHHHHHHHHH
Q 005161 130 SQQGKLEEAELVLVSMREAGFSPNIV-------AYNTLMTGY--GKVSNMEAAQRLFLSI 180 (711)
Q Consensus 130 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~--~~~~~~~~a~~~~~~~ 180 (711)
++.|+.+....+++.+.+.+...+.. ..+.|..+. ++.|+.+-+..+++.-
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 35566666666666555554433322 223333322 1456666666665543
No 339
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.39 E-value=3.2e+02 Score=23.01 Aligned_cols=92 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHc---CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC-----HHHHHHHHHHHHhCCCCccHHHHHHHH
Q 005161 440 MLRIYQQC---GMLDKLSYLYYKILKSGITWNQELYDCVINCCARALP-----IDELSRVFDEMLQHGFTPNIITLNVML 511 (711)
Q Consensus 440 l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~ 511 (711)
+++++-++ .+.+.|+-++-+|++.|-.|.-..-..++-+....|. ...|...++.....|.+.-...+...+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 117 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQAS 117 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHhccCcHHHHHHHHHHHHH
Q 005161 512 DIYGKAKLFKRVRKLFSMAKK 532 (711)
Q Consensus 512 ~~~~~~~~~~~a~~~~~~~~~ 532 (711)
-.++.+.+...+ ..++.+.+
T Consensus 118 iyLA~APKSNs~-~A~~~A~~ 137 (213)
T 3ctd_A 118 LYLAISPKSNST-KSIFKAME 137 (213)
T ss_dssp HHHHHSCCCCGG-GHHHHHHH
T ss_pred HHHHcCCccHHH-HHHHHHHH
No 340
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.13 E-value=5.1e+02 Score=25.24 Aligned_cols=35 Identities=14% Similarity=-0.004 Sum_probs=17.4
Q ss_pred cCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 005161 44 CDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRK 78 (711)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 78 (711)
.|.+--...|..-.+.+...|++++|.++-...++
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~ 389 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK 389 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc
Confidence 34443344444445555555555555555444443
No 341
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.77 E-value=3.2e+02 Score=22.80 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=34.2
Q ss_pred HHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccC--C---HHHHHHHHHHHHHcCCC
Q 005161 25 CNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSW--N---VEEAEFAFNQMRKLGLV 82 (711)
Q Consensus 25 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~---~~~A~~~~~~~~~~~~~ 82 (711)
..|-.+++.|+-++..|++.| .|.......++-+.-..| + +..|...++.+...+.+
T Consensus 24 SiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 24 SIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 346788999999999999988 555444443443433333 2 33345555555555543
No 342
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=23.58 E-value=3.8e+02 Score=23.55 Aligned_cols=175 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005161 537 DVISYNTIIAAYGQNKNLESMSSTVQEMQFDGFSVSLEAYNSMLDAYGKE-GQMENFKNVLRRMKETSCTFDHYTYNIMI 615 (711)
Q Consensus 537 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 615 (711)
+......++...-+.+++++..+..+.+.+.+...+..-.|.|-.+|-.. |....+++++..+....-.........++
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i 109 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 109 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHH
Q ss_pred HHHhhc--CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHhccCCh-----------------HHHHHHHHHHH---HcC
Q 005161 616 DIYGEQ--GWINEVVGVLTELKECGLRPDLCSYNTLIKAYGIAGMV-----------------EDAVGLVKEMR---ENG 673 (711)
Q Consensus 616 ~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-----------------~~A~~~~~~~~---~~~ 673 (711)
..|.+. ..+..--.-.-.+++..+-|+..+-.+-+--+-..|++ +.|.+.|+.+. +..
T Consensus 110 ~~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~ 189 (261)
T 3ubw_A 110 REYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTE 189 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred CCCCcchHHHHHHHHH-----hcchHHHHHHHHHHHHHhCcCC
Q 005161 674 IEPDKITYTNMITALQ-----RNDKFLEAIKWSLWMKQIGLQD 711 (711)
Q Consensus 674 ~~p~~~~~~~l~~~~~-----~~~~~~~A~~~~~~m~~~g~~~ 711 (711)
++|+..+...|+-.|. -.+++++|..+.+..-+..+..
T Consensus 190 L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~e 232 (261)
T 3ubw_A 190 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAE 232 (261)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
No 343
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.22 E-value=1.5e+02 Score=18.82 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=10.0
Q ss_pred cCChHHHHHHHHHHHHcCCCC
Q 005161 656 AGMVEDAVGLVKEMRENGIEP 676 (711)
Q Consensus 656 ~g~~~~A~~~~~~~~~~~~~p 676 (711)
.|+.+.|+..+-.|...+..|
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSC
T ss_pred CCCHHHHHHHHHcCcCCCCCC
Confidence 345555555555554433333
No 344
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=22.69 E-value=3.3e+02 Score=22.54 Aligned_cols=168 Identities=9% Similarity=-0.025 Sum_probs=92.3
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 005161 14 NFQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFGMLMGLYKKSWNVEEAEFAFNQMRKLGLVCESAYSAMITI 93 (711)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 93 (711)
+..+=...+..+.+.|.. .+...+..+++ .++..+....+.++.+.|+.+.. ..+..+... .+.......+.+
T Consensus 32 ~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~~--~~~~vr~~a~~a 104 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALKD--EDGWVRQSAAVA 104 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTTC--SSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHcC--CCHHHHHHHHHH
Confidence 444444444555555552 33344444443 35666666677777777764333 333333221 223455666677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCChHHH
Q 005161 94 YTRLSLYEKAEEVIRLIREDKVVPNLENWLVMLNAYSQQGKLEEAELVLVSMREAGFSPNIVAYNTLMTGYGKVSNMEAA 173 (711)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 173 (711)
+.+.+..+ +...+..+... ++.......+.++.+.+..+ +...+..+.+ .++..+-...+.++.+.+. ..+
T Consensus 105 L~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~ 175 (211)
T 3ltm_A 105 LGQIGDER-AVEPLIKALKD---EDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERV 175 (211)
T ss_dssp HHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHH
T ss_pred HHHhCcHH-HHHHHHHHHhC---CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhH
Confidence 77777654 44444445432 57777777788888887754 4445555554 3577776777777777776 445
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHH
Q 005161 174 QRLFLSIKDVGLEPDETTYRSMIEGWG 200 (711)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~li~~~~ 200 (711)
...+..+.+. ++...-...+.++.
T Consensus 176 ~~~L~~~l~d---~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 176 RAAMEKLAET---GTGFARKVAVNYLE 199 (211)
T ss_dssp HHHHHHHHHH---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 5555555542 44444444444443
No 345
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=21.81 E-value=1.4e+02 Score=25.54 Aligned_cols=74 Identities=7% Similarity=-0.040 Sum_probs=38.8
Q ss_pred HHHHHHHCCCCCChHh--HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcch--HHHHHHHHHhcchHHHHHHHHHHHH
Q 005161 630 VLTELKECGLRPDLCS--YNTLIKAYGIAGMVEDAVGLVKEMRENGIEPDKIT--YTNMITALQRNDKFLEAIKWSLWMK 705 (711)
Q Consensus 630 ~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~ 705 (711)
+++.+.+.|..++... -.+.+...++.|+.+ +++.+.+.|..++... -.+.+......|+...++++.+.+.
T Consensus 159 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 159 IAEILLAAKCDLHAVNIHGDSPLHIAARENRYD----CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHh----HHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555555554211 112333444556544 3444555666664321 1233344566788888888888877
Q ss_pred Hh
Q 005161 706 QI 707 (711)
Q Consensus 706 ~~ 707 (711)
++
T Consensus 235 ds 236 (237)
T 3b7b_A 235 DS 236 (237)
T ss_dssp HC
T ss_pred cc
Confidence 64
No 346
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.54 E-value=3.1e+02 Score=21.80 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 005161 451 DKLSYLYYKILKSGITWNQELYDCVINCCARALPIDELSRVFDEMLQHGFT 501 (711)
Q Consensus 451 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 501 (711)
+.+..++..+.+.|...|...-..++....+.| .....+-.++.+.|+.
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 344445555555554434333334444333322 1233444444444443
No 347
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.29 E-value=3e+02 Score=24.39 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=7.8
Q ss_pred HHHHHcCCCHHHHHHHHH
Q 005161 231 INLHAKYEDEEGAVNTLD 248 (711)
Q Consensus 231 ~~~~~~~~~~~~a~~~~~ 248 (711)
+...+..|+.+-+..+++
T Consensus 165 L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHH
Confidence 334444455444443333
No 348
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.87 E-value=5.2e+02 Score=24.17 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhh
Q 005161 297 SILVMAYVKHGLIDDAMKVLGDKR 320 (711)
Q Consensus 297 ~~l~~~~~~~g~~~~a~~~~~~~~ 320 (711)
..++.-|...|+.++|...++++.
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345555555666666666655553
No 349
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.70 E-value=5.3e+02 Score=25.04 Aligned_cols=124 Identities=16% Similarity=0.115 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhHcCCCCCHhhHH---------HHHHHHHccCCHHHHHHHHHHHHHc-CCCc-
Q 005161 15 FQLFNTLIYACNKRGCVELGAKWFHMMLECDVQPNVATFG---------MLMGLYKKSWNVEEAEFAFNQMRKL-GLVC- 83 (711)
Q Consensus 15 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~- 83 (711)
....+.+.+.|.+.++.+.+..++..+...+..|+...|. .+.+.++-.+++.+|.+.|..+.+. .+..
T Consensus 176 l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~ 255 (455)
T 3t5v_B 176 LYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPL 255 (455)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccc
Q ss_pred ---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHH
Q 005161 84 ---------ESAYSAMITIYTRLSLYEKAEEVIRLIREDKVVPNLEN-WLVMLNAYSQQGKLEEAELVLVS 144 (711)
Q Consensus 84 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~ 144 (711)
......++-+-.-.|+.-...- ......|.... |..+..+. +.|++..-.++++.
T Consensus 256 ~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~l-----l~k~~~~~L~~~y~~L~~AV-r~Gdl~~F~~~L~~ 320 (455)
T 3t5v_B 256 TNQAITRNGTRILNYMIPTGLILGKMVKWGP-----LRPFLSQETIDNWSVLYKHV-RYGNIQGVSLWLRQ 320 (455)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCBCHHH-----HGGGSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHcCCCCCHHH-----HcccchHHHHHHHHHHHHHH-HhCCHHHHHHHHHH
No 350
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.53 E-value=2.7e+02 Score=23.49 Aligned_cols=24 Identities=17% Similarity=-0.211 Sum_probs=13.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC
Q 005161 197 EGWGRAGNYREAKWYYKELKHLGY 220 (711)
Q Consensus 197 ~~~~~~g~~~~A~~~~~~~~~~~~ 220 (711)
...+..|+.+-+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 334455666655555555555543
No 351
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.25 E-value=5.1e+02 Score=23.86 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005161 86 AYSAMITIYTRLSLYEKAEEVIRLIR 111 (711)
Q Consensus 86 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 111 (711)
....++.=|...|+.++|...++++.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 45678888888899999988888764
No 352
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=20.19 E-value=2.2e+02 Score=21.26 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-CCCCCChHhHHHHHHHHhccCChHHHHHHH
Q 005161 588 QMENFKNVLRRMKETSCTFDHYTYNIMIDIYGEQGWINEVVGVLTELKE-CGLRPDLCSYNTLIKAYGIAGMVEDAVGLV 666 (711)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 666 (711)
.+.+|..-+++..+. ++|......++..+-.. ++.|+++.+...+ .|+ .+.++...+....+.|-.++. +.+
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 567778877777653 56666666776655433 5667777766665 565 456677777777777766555 556
Q ss_pred HHHHH
Q 005161 667 KEMRE 671 (711)
Q Consensus 667 ~~~~~ 671 (711)
..|..
T Consensus 76 ~~m~~ 80 (119)
T 1wty_A 76 LEMLE 80 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
Done!