Query 005162
Match_columns 711
No_of_seqs 173 out of 329
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 17:17:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 1.2E-40 3.9E-45 294.0 -1.8 90 164-253 2-91 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 8.7E-39 3E-43 279.3 -3.5 82 169-250 2-83 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 5.4E-30 1.8E-34 210.3 0.6 59 169-227 2-60 (60)
4 1uad_C RSEC5, exocyst complex 28.4 37 0.0013 29.5 3.1 28 678-707 6-33 (99)
5 2lau_A THAP domain-containing 22.6 34 0.0012 28.2 1.7 10 171-180 5-14 (81)
6 1pby_A Quinohemoprotein amine 22.1 1.2E+02 0.0043 33.8 6.3 31 677-707 273-303 (489)
7 2d8r_A THAP domain-containing 21.8 37 0.0013 29.4 1.8 13 169-181 8-20 (99)
8 3fau_A NEDD4-binding protein 2 20.3 43 0.0015 27.8 1.8 31 584-615 51-81 (82)
9 1vk6_A NADH pyrophosphatase; 1 18.2 29 0.00098 35.0 0.4 38 184-222 99-136 (269)
10 2ptm_A Hyperpolarization-activ 17.2 1.2E+02 0.0043 27.3 4.4 27 646-672 98-127 (198)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.2e-40 Score=294.00 Aligned_cols=90 Identities=60% Similarity=1.047 Sum_probs=80.4
Q ss_pred CCCCCCCCCcccCCChhhhccchhhhccccccccccCCcEEeeCCcchhhhhhhccccCCCCccCccchHHHHHhHHHHh
Q 005162 164 SPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRR 243 (711)
Q Consensus 164 ~~g~~~~~~CQVdGC~~dLs~~k~YhrRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rLa~Hn~R 243 (711)
++|+++.++||||||.+||+.+|.||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+|
T Consensus 2 ~~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~R 81 (94)
T 1ul4_A 2 SSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNER 81 (94)
T ss_dssp ------CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCC
T ss_pred CCCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHH
Confidence 34457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCcccc
Q 005162 244 RRKTQPEDIT 253 (711)
Q Consensus 244 RRk~qp~~~~ 253 (711)
|||++++..+
T Consensus 82 RRk~~~~~~~ 91 (94)
T 1ul4_A 82 RRKSSGESGP 91 (94)
T ss_dssp CCSCCCC---
T ss_pred hccCCCCcCC
Confidence 9999999765
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=8.7e-39 Score=279.29 Aligned_cols=82 Identities=44% Similarity=0.928 Sum_probs=77.8
Q ss_pred CCCCcccCCChhhhccchhhhccccccccccCCcEEeeCCcchhhhhhhccccCCCCccCccchHHHHHhHHHHhhccCC
Q 005162 169 PYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQ 248 (711)
Q Consensus 169 ~~~~CQVdGC~~dLs~~k~YhrRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rLa~Hn~RRRk~q 248 (711)
+.++||||||++||+.+|.||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||++|++||+||||..
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred Cc
Q 005162 249 PE 250 (711)
Q Consensus 249 p~ 250 (711)
.+
T Consensus 82 ~~ 83 (88)
T 1ul5_A 82 VD 83 (88)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=99.95 E-value=5.4e-30 Score=210.31 Aligned_cols=59 Identities=75% Similarity=1.229 Sum_probs=57.1
Q ss_pred CCCCcccCCChhhhccchhhhccccccccccCCcEEeeCCcchhhhhhhccccCCCCcc
Q 005162 169 PYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFD 227 (711)
Q Consensus 169 ~~~~CQVdGC~~dLs~~k~YhrRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFD 227 (711)
+.++||||||++||+.+|+|||||||||.|+||++|+++|.++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 46799999999999999999999999999999999999999999999999999999998
No 4
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=28.36 E-value=37 Score=29.51 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=24.1
Q ss_pred CCCeeeEecceeEecCCeeEEEEEeeeCCC
Q 005162 678 SSPELISVSPLAVVGGQELSFKLRGRNLTN 707 (711)
Q Consensus 678 ~~P~I~sV~PiAv~ag~~~~f~v~G~NL~~ 707 (711)
-.|+|..|+|..-..| +.++++|.||-.
T Consensus 6 p~P~It~i~P~~Gp~G--T~vTI~G~nlg~ 33 (99)
T 1uad_C 6 QPPLVTGISPNEGIPW--TKVTIRGENLGT 33 (99)
T ss_dssp CCCEEEEEESSEESTT--CEEEEEEECSCS
T ss_pred CCCEEEEEECCCcCCC--CEEEEEEEeCCC
Confidence 4689999999988666 999999999954
No 5
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=22.62 E-value=34 Score=28.22 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=8.2
Q ss_pred CCcccCCChh
Q 005162 171 PMCQVDNCKE 180 (711)
Q Consensus 171 ~~CQVdGC~~ 180 (711)
..|-|.||..
T Consensus 5 ~~C~v~gC~n 14 (81)
T 2lau_A 5 FTCCVPGCYN 14 (81)
T ss_dssp CSCCCSSSSS
T ss_pred CEEEeCCCcC
Confidence 5799999974
No 6
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=22.06 E-value=1.2e+02 Score=33.81 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=29.3
Q ss_pred CCCCeeeEecceeEecCCeeEEEEEeeeCCC
Q 005162 677 WSSPELISVSPLAVVGGQELSFKLRGRNLTN 707 (711)
Q Consensus 677 ~~~P~I~sV~PiAv~ag~~~~f~v~G~NL~~ 707 (711)
...|+|+.|.|-++.+|.+++++|-|.+|..
T Consensus 273 ~~~~~~~av~P~~l~aG~~~~~~i~G~gL~g 303 (489)
T 1pby_A 273 DAAPQVLAVAPARLKIGEETQLRVAGTGLGS 303 (489)
T ss_dssp TCSSEEEEEESCEEETTCCEEEEEEEESCCS
T ss_pred CCCceEEEeChhhhcCCCceEEEEEeccccc
Confidence 6789999999999999999999999999985
No 7
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=21.82 E-value=37 Score=29.36 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=9.6
Q ss_pred CCCCcccCCChhh
Q 005162 169 PYPMCQVDNCKED 181 (711)
Q Consensus 169 ~~~~CQVdGC~~d 181 (711)
....|-|.||...
T Consensus 8 M~~~C~v~gC~n~ 20 (99)
T 2d8r_A 8 MPTNCAAAGCATT 20 (99)
T ss_dssp CCCCCCSSSCCCS
T ss_pred CCCeeEeCCCCCC
Confidence 3346999999864
No 8
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=20.27 E-value=43 Score=27.78 Aligned_cols=31 Identities=19% Similarity=0.539 Sum_probs=23.7
Q ss_pred chhhHHHHHHHhcCCCccccccccCCceEEee
Q 005162 584 PGTLRKEIYNWLSNSPSEMESYIRPGCVILSL 615 (711)
Q Consensus 584 P~~LR~QI~~WLs~~P~dmEgYIRPGCviLTI 615 (711)
...||..|.+||...|-..+. .-|||+++.+
T Consensus 51 ~~~Lk~~V~~~L~~~~~~~~e-~n~G~l~V~l 81 (82)
T 3fau_A 51 VARIKPAVIKYLISHSFRFSE-IKPGCLKVML 81 (82)
T ss_dssp --CHHHHHHHHHHHTTCCEEE-EETTEEEEEC
T ss_pred cchHHHHHHHHHHhCCCceee-CCCEEEEEEe
Confidence 356999999999998866543 5899988764
No 9
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=18.21 E-value=29 Score=35.03 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=28.7
Q ss_pred cchhhhccccccccccCCcEEeeCCcchhhhhhhccccC
Q 005162 184 NAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHP 222 (711)
Q Consensus 184 ~~k~YhrRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~ 222 (711)
.+..+|++++-|..+-. +....++...+.|..|+..|-
T Consensus 99 ~l~~w~~~~~fC~~CG~-~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 99 QLAEFYRSHKYCGYCGH-EMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HHHHHHHTTSBCTTTCC-BEEECSSSSCEEESSSSCEEC
T ss_pred HHHhhhhcCCccccCCC-cCccCCCceeeeCCCCCCEec
Confidence 34568899999977654 455567778899999997663
No 10
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=17.21 E-value=1.2e+02 Score=27.25 Aligned_cols=27 Identities=11% Similarity=0.386 Sum_probs=16.1
Q ss_pred ccccceEEEEe---CceeEEeeCCeEEEee
Q 005162 646 FWRNARFLVHT---GKQLASHKDGNIRVCK 672 (711)
Q Consensus 646 fWr~G~~lvqv---~~qla~~~dG~v~l~~ 672 (711)
....|.++++- .+.+.++..|.|.+..
T Consensus 98 ~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~ 127 (198)
T 2ptm_A 98 VFQPADYVIQEGTFGDRMFFIQQGIVDIIM 127 (198)
T ss_dssp EECTTCEEECTTSCCSEEEEEEECCEEEEC
T ss_pred eeCCCCEEEECCCcCcEEEEEEeCEEEEEe
Confidence 34445555543 3457778888876654
Done!