Query 005163
Match_columns 710
No_of_seqs 153 out of 179
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 19:05:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07575 Nucleopor_Nup85: Nup8 100.0 3E-110 6E-115 962.0 23.2 561 67-672 2-565 (566)
2 KOG2271 Nuclear pore complex c 100.0 2E-101 5E-106 850.5 52.0 644 20-709 7-676 (678)
3 PF12110 Nup96: Nuclear protei 97.9 0.00026 5.7E-09 75.7 16.4 215 229-498 4-256 (290)
4 PF04121 Nup84_Nup100: Nuclear 97.6 0.00087 1.9E-08 80.2 16.0 304 224-567 133-506 (697)
5 KOG1964 Nuclear pore complex, 96.6 0.36 7.8E-06 56.3 22.3 297 225-567 221-582 (800)
6 KOG2168 Cullins [Cell cycle co 95.9 5.8 0.00012 47.8 29.5 360 225-629 326-735 (835)
7 PF04097 Nic96: Nup93/Nic96; 93.8 5.6 0.00012 47.2 20.8 424 223-695 110-595 (613)
8 smart00299 CLH Clathrin heavy 67.8 13 0.00029 34.6 6.1 58 499-556 68-132 (140)
9 KOG0307 Vesicle coat complex C 61.0 2E+02 0.0044 36.0 15.4 131 392-554 489-622 (1049)
10 KOG2114 Vacuolar assembly/sort 58.7 24 0.00052 42.6 7.0 63 484-547 446-517 (933)
11 COG2909 MalT ATP-dependent tra 56.9 61 0.0013 39.6 10.0 109 482-593 298-418 (894)
12 PF04190 DUF410: Protein of un 56.4 25 0.00055 37.1 6.3 93 448-554 29-124 (260)
13 PF10602 RPN7: 26S proteasome 49.4 1.4E+02 0.003 29.6 9.9 59 503-561 19-78 (177)
14 PF11237 DUF3038: Protein of u 44.2 89 0.0019 31.0 7.4 40 480-519 1-40 (171)
15 KOG2114 Vacuolar assembly/sort 41.4 53 0.0012 39.8 6.3 56 506-561 353-409 (933)
16 PF00637 Clathrin: Region in C 39.8 3.8 8.3E-05 38.4 -2.8 70 486-558 59-134 (143)
17 PF12931 Sec16_C: Sec23-bindin 38.3 1.4E+02 0.003 31.9 8.5 40 328-367 60-114 (284)
18 PF04053 Coatomer_WDAD: Coatom 36.4 1.4E+02 0.003 34.1 8.6 48 503-554 334-381 (443)
19 PF07035 Mic1: Colon cancer-as 35.8 1.7E+02 0.0038 28.8 8.0 109 454-566 11-133 (167)
20 PF07719 TPR_2: Tetratricopept 35.6 52 0.0011 22.1 3.3 26 521-546 2-27 (34)
21 PF08631 SPO22: Meiosis protei 33.3 6E+02 0.013 26.8 15.5 28 522-549 37-65 (278)
22 KOG0276 Vesicle coat complex C 28.4 71 0.0015 37.5 4.4 131 419-552 551-698 (794)
23 KOG4063 Major epididymal secre 25.9 41 0.00088 32.5 1.7 64 3-75 79-143 (158)
24 PF13374 TPR_10: Tetratricopep 23.3 1.1E+02 0.0024 21.4 3.3 26 521-546 3-28 (42)
25 PF12816 Vps8: Golgi CORVET co 22.1 75 0.0016 32.1 2.9 47 471-518 23-70 (196)
No 1
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=100.00 E-value=2.8e-110 Score=961.97 Aligned_cols=561 Identities=30% Similarity=0.491 Sum_probs=336.3
Q ss_pred EEEEEcCCCCCCCchHHHHHHhhcchhHHhhhhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHHHhhccccCccccc
Q 005163 67 VEVRLDGRDGEISDAQWRRIAYGSVSPFALLQSRKNSFASLSKISSTTSPFDAEWWEYVLEYSKDISSLLGNQTSTTQSL 146 (710)
Q Consensus 67 v~v~~~~~~~~~~~~~lR~L~~es~~~F~~LQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~~~~~~ 146 (710)
|.||.++.+.++++|++|+||+|||+||++||+.++.....+++.. ....++++++++||++|++|++++++.+++.
T Consensus 2 ~~~~~~~~~~~~~s~~~R~lv~es~~iF~~LQ~~~~~~~~~~~~~~---~~~~e~~~~s~~yrs~i~~~~~~~~~~~~~~ 78 (566)
T PF07575_consen 2 VKLYPVREDRIDDSPELRKLVNESFEIFASLQKDRQFSVPTDGMIK---SSSAEYVKISRAYRSIIRACLENLESIKEPI 78 (566)
T ss_dssp -EEBEE--TT---SHHHHHHHHHHHHHHHHGGGGGS---------T---THHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ceEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhccccccccccc---cchHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 5689999999999999999999999999999998753221111111 1124888999999999999999998754444
Q ss_pred ccCchhhccCC-ccchHHHHHHHHHHHhcccCCCCcchHHHHHHHHhhcccCCchhhhhhhhhhhhHHhhhhccCCCCC-
Q 005163 147 IEDPKEVLKDP-EPSNLKAAWELMESFYADKLSQAWLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDE- 224 (710)
Q Consensus 147 ~~~~~~~~~~~-~~~~~~~iW~L~Eily~~~~~~~~v~~~LldWvn~~d~~~~~~~e~~~~~l~~~~~ev~~~~~p~~~- 224 (710)
.+++.++.... .++++++|||||||||+++.+++++|++|++|+|++|.. |.++. +++++....|.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~iw~L~eil~~~~~~~~~v~~~Ll~WvNr~~~~--~~~~~--------~~~vl~~~~p~~~~ 148 (566)
T PF07575_consen 79 IEDEEELEEQLEILYCLEAIWHLCEILYVDSQPRGPVPEQLLDWVNRFHFP--PSEEL--------AEEVLSSEPPYEHD 148 (566)
T ss_dssp THHHHHHHHHHHHHHHHHHHHSSSTT-S-TTTTHHHHHHHHHHHHHTTS----SHHHH--------HTTSCSS-HSCSGS
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCchHHHHHHHHHHhCCC--CchhH--------HHHHhccCCCCccc
Confidence 44444433333 448899999999999999988899999999999999865 55443 2577765557777
Q ss_pred cchHHHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhhHHHHHHHHHHhCCCCCccccccccccccCChhHHHHHH
Q 005163 225 PKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAW 304 (710)
Q Consensus 225 p~FW~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~ef~~~w 304 (710)
|+||++|+++|+||++++|+++|+.|++++.+ ..+++++++++||++||+++++++ .+.++|..+|
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~~s~~~~~------~~~~~~~~~~~LL~~~P~~~~~~~--------~s~~~f~~~~ 214 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRLHSSYQSY------SLQSAFEALIQLLSSMPRYRPNSG--------QSESEFSSQW 214 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-TTTTTTTH------HHHHHHHHHHHHHTT--------------------SS-HHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhcccccch------hHHHHHHHHHHHHHhCCCccccch--------hhhHHHHHHH
Confidence 99999999999999999999999999998642 356899999999999999997652 4889999999
Q ss_pred HHHHHHHHHhhccchhhhccccccHHhHHHHHHHhcCCchHHhhhhccHHHHHHHhhheecCCccccchhHHHHHHHHHh
Q 005163 305 EKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQL 384 (710)
Q Consensus 305 ~~W~~~~~~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd~~~i~~~~~~WyE~l~a~lly~~P~~~~~e~l~~~a~~~~~~ 384 (710)
++||.+|+++... +.++....++++|++|++||+||+++|+++|+||||+++|+++|++|++++.+.++++++.|++.
T Consensus 215 ~~W~~~~~~l~~~--~~~~~~~~~~~~L~~l~~Il~G~~~~i~~~~~~WyE~~~a~~ly~~P~~~~~e~l~~~a~~~~~~ 292 (566)
T PF07575_consen 215 REWKSECRRLRSS--SLQDGPFEIRENLEDLLKILLGDEDTILEYSQDWYEALVALLLYVDPTCKPFELLHEYAQSCLEE 292 (566)
T ss_dssp HHHHHHHHHHHHH--S---S-HHHHHHHHHHHHHHHT-HHHHHHT-SSHHHHHHHHHHHT------TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hhccCchhhHHHHHHHHHHHCCCHHHHHHHhCcHHHHHHHhheeeCCCcchhhhHHHHHHHHHhc
Confidence 9999999986544 34555567899999999999999999999999999999999999999999887689999999999
Q ss_pred CCCCcCCchHHHHHHHHccCHHHHHHHHhhccC-cchHHHHHHHHHcCCCccchhhhhhccCCCCCchhHHHHHHHHHHH
Q 005163 385 KPMAASHRLMGLLIGILGENIEVVLAECSKGFG-PWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVL 463 (710)
Q Consensus 385 ~~~~~~~~ld~il~~ile~d~~~vL~~~~~~ld-~W~aaHl~dLL~~~g~l~~~ll~~~~~~~~~~~lre~~Ll~YA~~L 463 (710)
+|++.++++|+++.+||+||+.+||+.|+..+| +||+||++|||+++|.+.+ ....++++.+|||+++++||++|
T Consensus 293 ~~~~~~~~~e~~~~~i~~~d~~~vL~~~~~~~~~~w~aahladLl~~~g~L~~----~~~~~~~~~~lre~~ll~YA~~L 368 (566)
T PF07575_consen 293 FPPDSTNPLEQILLAIFEGDIESVLKEISSLFDDWWFAAHLADLLEHKGLLED----SEQEDFGGSSLREYLLLEYASSL 368 (566)
T ss_dssp S---TTSTTHHHHHHHHTS--GGGHHHHHHH--HHHHHHHHHHHHHHTTSS------SS-----TS-HHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHccCHHHHHHHHHHHccchhHHHHHHHHHHhcCcccc----ccccccccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999987776 5999999999999997442 23344445899999999999999
Q ss_pred ccCCCcchhhhHHHhhchHhhHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHH
Q 005163 464 SSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWL 543 (710)
Q Consensus 464 ~s~~~LW~vai~YL~~c~~~G~~~i~~lL~r~Pl~te~~~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~ 543 (710)
++|++|||||++||++|+++|+.+|+++|+|+|++||++++|++++|+++||++++++|||++|++++++|+||+||.|+
T Consensus 369 ~s~~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~ 448 (566)
T PF07575_consen 369 MSHHSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWF 448 (566)
T ss_dssp HT-TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHHhccCCcchhhhhHHHHHhcCCCccccCcchhhHhHHHHHHHHHhhhcCCchHHHHHHHHH
Q 005163 544 QQARDEARLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVES 623 (710)
Q Consensus 544 ~rA~D~~~v~~iad~ll~~y~~~~s~~~~~~~~dll~~l~~~~~~s~~L~FL~kY~eF~~~~~~~~~g~~~~~~r~Aa~~ 623 (710)
+||||...|++|+|++|++|+..+ ++. +.++|+++++.+.++++|+||+|||+||++|++ | ++++||++
T Consensus 449 ~ra~d~~~v~~i~~~ll~~~~~~~--~~~--~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~---~----~~~~Aa~~ 517 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLLEEYCNNG--EPL--DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDE---G----DFREAASL 517 (566)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred HHCCCHHHHHHHHHHHHHHHhcCC--Ccc--cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhh---h----hHHHHHHH
Confidence 999999999999999999999874 222 369999999999999999999999999999876 4 45689999
Q ss_pred HHHhhcCCCCchhcHHHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHH
Q 005163 624 LISLMKNPCTPQRFWLPLLHDSLKLLNWEERPLLNVLQTNLLLNKLQEL 672 (710)
Q Consensus 624 Lv~Ll~s~~~Pk~fw~~LL~dalpLLe~~~~~~fs~~qt~~LL~~LEel 672 (710)
||+||+++++||+||+.||+|++|||++++ ++|+++|||+||+|||++
T Consensus 518 Lv~Ll~~~~~Pk~f~~~LL~d~lplL~~~~-~~f~~~~~~~ll~~Le~~ 565 (566)
T PF07575_consen 518 LVSLLKSPIAPKSFWPLLLCDALPLLESDE-VIFSSSDTYELLRCLEEL 565 (566)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHCCCCCcHHHHHHHHHHHHHHhCCCC-CccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999976 789999999999999985
No 2
>KOG2271 consensus Nuclear pore complex component (sc Nup85) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-101 Score=850.55 Aligned_cols=644 Identities=24% Similarity=0.346 Sum_probs=537.2
Q ss_pred CeeeecccccCCCc-cceeeeecCCCeeEEEeecCCCCC---CCCCCCC-ceEEEEEcCCCCCCCc-hHHHHHHhhcchh
Q 005163 20 PVVYPLRHGLKPPI-SRLGISWSRGNSLRVTVFRQPSED---SENEVGG-KAVEVRLDGRDGEISD-AQWRRIAYGSVSP 93 (710)
Q Consensus 20 ~~~~~~~~~~~~~~-~~~~~~w~~g~~l~~~~~~~~~~~---~~~~~~~-~~v~v~~~~~~~~~~~-~~lR~L~~es~~~ 93 (710)
.+-+||-||++.|+ ++++++|++|+.++|+..+.|... ..++.++ .+|.|++.+.+.++++ |.||+|++|+|++
T Consensus 7 ~~~~~l~~~~~a~~~n~~~~~w~~G~~v~~s~~~~~~~~~~~e~~en~~k~pvlv~l~~q~~ef~t~p~Lr~l~~e~~~~ 86 (678)
T KOG2271|consen 7 VVQFPLLDDLNAPLSNNKTDDWEPGKRVAVSGARLPMFVNRDEKDENVGKMPVLVELSSQNMEFSTAPRLRRLLAESHSL 86 (678)
T ss_pred CceeeccccccccccCCccccccCCceeeeeccccccccccCccccccCCCceeEEeccccceecccHHHHHHHHHHHHH
Confidence 46899999999999 999999999999999999854443 2333344 6889999999999999 9999999999999
Q ss_pred HHhhhhhhhcccccccccCCCCCCcHHHHHHHHHHHHHHHHhhccccCcccccccCchhhccCCccchHHHHHHH-HHHH
Q 005163 94 FALLQSRKNSFASLSKISSTTSPFDAEWWEYVLEYSKDISSLLGNQTSTTQSLIEDPKEVLKDPEPSNLKAAWEL-MESF 172 (710)
Q Consensus 94 F~~LQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iW~L-~Eil 172 (710)
|+.||+......+.+++-.+.+.|+..++.+..++.+++.+..-+......+..+++..++ +.++++|++ |||+
T Consensus 87 F~~lQ~~~~~i~~~~~~~~~S~~Yrsi~~~~~~~~~q~~~~l~~~~~~~~~~~~~~~v~v~-----~~~E~~W~~~~~il 161 (678)
T KOG2271|consen 87 FEILQLGDSPITNVPTLVVVSSNYRSIHRACVEKASQAIKSLESETFEGRVKLQSDRVSVF-----YELESLWFLLCEIL 161 (678)
T ss_pred HHHHHccCCcCCCcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhcccccchhhcccHHHHH-----HHHHHHHHHhheee
Confidence 9999977655444444444444555544444444444444322222221123334444444 889999999 9999
Q ss_pred hcccCCCCcchHHHHHHHHhhcccCCchhhhhhhhhhhhHHhhhhccCCCCCcchHHHHHHHHhcCcHHHHHHHHHhccC
Q 005163 173 YADKLSQAWLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKYWEVMSSALAVGWLDIVVKLLRLHGS 252 (710)
Q Consensus 173 y~~~~~~~~v~~~LldWvn~~d~~~~~~~e~~~~~l~~~~~ev~~~~~p~~~p~FW~~v~~lvlrG~~~~A~~lL~~hs~ 252 (710)
|+++.|++.+.++|+||+|.+++. |..+. .+.++.-+.|.+|+.||++|+++++||++++|+.+|.+.+.
T Consensus 162 fi~s~~~~~~~~~lldW~n~~~~~--~d~~~--------~~~l~~~~~~t~~d~fW~~v~~l~l~G~ld~~i~~l~~~~~ 231 (678)
T KOG2271|consen 162 FIDSSPASELIESLLDWANRSDPE--PDEEY--------IEVLFSVEDATEHDEFWKLVNSLLLRGLLDQVISCLERSGL 231 (678)
T ss_pred eccCcchhhhhHHHHHHHHhccCC--cchhh--------hHHHhcccCCCCCchHHHHHHHHHHhhHHHHHHHHHHhcCC
Confidence 999988899999999999999976 44433 25677779999999999999999999999999999998766
Q ss_pred CccccccCccchhhHHHHHHHHHHhCCCCCccccccccccccCChhHHHHHHHHHHHHHHHhhccchhhhccccccHHhH
Q 005163 253 YQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGL 332 (710)
Q Consensus 253 ~~~d~l~~~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~ef~~~w~~W~~~~~~L~~~~f~~~~~~~~~~~~L 332 (710)
...+ ...+...+.+++++||.++.+. .+..+|..+|+.|+.++.+. .+|.++.+.+++++|
T Consensus 232 ~~~~-------s~~~~v~~~~i~~s~pl~~~g~---------~~ls~t~~~Wk~w~~kle~~---~~~~qd~~~~t~~~l 292 (678)
T KOG2271|consen 232 APCL-------SFLCAVELLDILRSMPLLQQGP---------KDLSETERRWKNWHLKLERA---GSKAQDISFETRDYL 292 (678)
T ss_pred Cccc-------hhHHHHHHHHHhCccccccccc---------hhHHHHHHHHHHHHHHHHhh---hhhhccccccchhhH
Confidence 6421 2233478999999999998653 37889989999999886543 677888888999999
Q ss_pred HHHHHHhcCCchHHhhhhccHHHHHHHhhheecCCccccchhHHHHHHHHH----hCCCCcCCchHHHHHHHHccCHHHH
Q 005163 333 RNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQKCIQ----LKPMAASHRLMGLLIGILGENIEVV 408 (710)
Q Consensus 333 ~~ll~IL~Gd~~~i~~~~~~WyE~l~a~lly~~P~~~~~e~l~~~a~~~~~----~~~~~~~~~ld~il~~ile~d~~~v 408 (710)
+.+++||.||+++|+.+++||||+|++++||++|++++.+++++++++|.. .+|.+++.++++++..+|+.|...+
T Consensus 293 e~lLkil~Gn~~~l~~~~~~Wye~f~~~lLy~~P~~k~~~~l~~la~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 372 (678)
T KOG2271|consen 293 EDLLKILLGNERKLLAYSRTWYEYFVGFLLYYNPFLKPSDELISLAQECLTLDIFLGPENECVDLERILLPLLESDDSCV 372 (678)
T ss_pred HHHHHHHcCCHHHHHHHhhhHHHHHHHHHHhcCcccCCCHHHHHHHHHHhhhhhhcCCcccchhHHHHHHHHhccChHhH
Confidence 999999999999999999999999999999999999999879999999988 4688889999999999999999999
Q ss_pred HHHHhhccCcchHHHHHHHH---HcCCCccchhhhhhccCCCCCchhHHHHHHHHHHHccCCCcchhhhHHHhhchHhhH
Q 005163 409 LAECSKGFGPWMVTHAIEVL---TAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGM 485 (710)
Q Consensus 409 L~~~~~~ld~W~aaHl~dLL---~~~g~l~~~ll~~~~~~~~~~~lre~~Ll~YA~~L~s~~~LW~vai~YL~~c~~~G~ 485 (710)
++.++..-++||++|++||+ +|+|. ..-+.++.++++.+|||+++++||+.|++|+.|||+|++||++|++.|+
T Consensus 373 ik~~~~~~~~wl~~Hl~DLl~~s~h~~~---l~~~~ee~~i~~~nMre~~lleYas~L~sh~~lWqig~~Yl~~c~~~G~ 449 (678)
T KOG2271|consen 373 IKFLAMLENKWLAVHLFDLLKNSDHCSN---LDSEMEENLISGRNMREYHLLEYASVLCSHKNLWQIGIGYLACCATEGL 449 (678)
T ss_pred HHHHHhhhcchHHHHHHHHHhcccchhh---hchhhhhhccchHhHHHHHHHHHHHHHHccchhhhHhHHHHHHhHhhhH
Confidence 99996442579999999999 55542 1112245566788899999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhcCCchHHH-HHHH-HHHHHHHhcCCch-HHHHHHHHcCChHHHHHHH-HHHHH
Q 005163 486 GLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSS-NIMK-IAGMYNWKHGKKG-SGVYWLQQARDEARLNRIA-QQMFD 561 (710)
Q Consensus 486 ~~i~~lL~r~Pl~te~~~~k~l~iC~~~~L~~va~-~I~k-~~g~~~~~~g~~g-~AL~w~~rA~D~~~v~~ia-d~ll~ 561 (710)
.+|+.+|+|+|++||++++|+|+||+++|+...+| .+|+ +++++.+++|+|| ++++|+.++++....+.++ |.++.
T Consensus 450 ~~iellipripl~~~~~aek~L~lc~q~~~l~~~r~~~c~~v~a~~~~~~~~yges~laW~~~~~~~~~~~~~~~d~l~~ 529 (678)
T KOG2271|consen 450 MRIELLIPRIPLVDNDMAEKLLSLCEQRGTLEDARMLSCKNVLAIRLFDNGHYGESLLAWALRAKSCALGTKTSDDFLLA 529 (678)
T ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhhhhhhhhhhhhhHhh
Confidence 99999999999999999999999999999555555 9999 9999999999999 9999999999999999999 88888
Q ss_pred HHhccCCcchhhhhHHHHHhcCCCccccCcch-hhHhHHHHHHHHHhhhcCCchHHHHHHHHHHHHhhcCCCCchhcHHH
Q 005163 562 SVGRSISDENFRQWEGLIQLLGSEPKTAGGLE-FLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLP 640 (710)
Q Consensus 562 ~y~~~~s~~~~~~~~dll~~l~~~~~~s~~L~-FL~kY~eF~~~~~~~~~g~~~~~~r~Aa~~Lv~Ll~s~~~Pk~fw~~ 640 (710)
+|++.+ ++.+ ++++.+.+.++++.|+|+ ||++|++||++|.-+ ++.+.- |+++||.||+|+++|++||+.
T Consensus 530 ~~sk~~---~~~d-~~li~~~~~~~~~tprL~sfl~~y~ef~q~y~~~---d~~d~~--a~~lLi~Lies~~~P~~~~~~ 600 (678)
T KOG2271|consen 530 IYSKNS---PAKD-DVLIPNDGLAMVATPRLVSFLSPYAEFHQFYELR---DFLDWG--ASELLINLIESPDAPRSYLPL 600 (678)
T ss_pred hhhccc---chhh-hhhhhccCcchhcchHHHHHHHHHHHHHHHHHHh---hhcchh--HHHHHHHHhhcccchHHHHHH
Confidence 888853 4333 789999999999999997 999999999999874 333211 899999999999999999999
Q ss_pred HHHHHHhhccCCCCCcccHHHHHHHHHHHHHHHhhhcCC--CCcCCC-----CccchHHHHHHHHHHHHHHhhhhc
Q 005163 641 LLHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIARLRP--DFIEAD-----LPPHALSSVRLALATNLGRTTLEE 709 (710)
Q Consensus 641 LL~dalpLLe~~~~~~fs~~qt~~LL~~LEel~~~~~~~--~~~~~~-----~~~~~l~~vRlaLArnLara~l~e 709 (710)
||.+..|+|++++..+|+.+.++++++++|+++....+. +.+++- .-.....++|+++|+|||+++++|
T Consensus 601 Ll~~l~p~l~~~~~~~fs~e~~~sl~~~~~~~~~~~~r~~~~~~etv~~~d~~~~s~~~~L~la~a~~la~sl~~~ 676 (678)
T KOG2271|consen 601 LLADLYPILESPDKIIFSKETVASLSHVYETLTDDAHRKSDSDTETVKKDDVLLLSSMARLSLAIAKNLAFSLIQE 676 (678)
T ss_pred HHHHHHHHHcCCccchhhHHHHHHHHHHHHHhhhhcccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999779999999999999999998877652 223331 234567889999999999999986
No 3
>PF12110 Nup96: Nuclear protein 96; InterPro: IPR021967 Nup96 (often known by the name of its yeast homologue Nup145C) is part of the Nup84 heptameric complex in the nuclear pore complex. Nup96 complexes with Sec13 in the middle of the heptamer. The function of the heptamer is to coat the curvature of the nuclear pore complex between the inner and outer nuclear membranes. Nup96 is predicted to be an alpha helical solenoid. The interaction between Nup96 and Sec13 is the point of curvature in the heptameric complex [], [].; PDB: 3BG1_C 3BG0_F 3IKO_B.
Probab=97.94 E-value=0.00026 Score=75.71 Aligned_cols=215 Identities=20% Similarity=0.179 Sum_probs=130.8
Q ss_pred HHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhhHHHHHHHHHHhCCCCCccccccccccccCChhHHHHHHHHHH
Q 005163 229 EVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKWR 308 (710)
Q Consensus 229 ~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~ef~~~w~~W~ 308 (710)
+.|..+++.|++++|+++.-.++.+ -+..||..+ .-.+ ........+...|+
T Consensus 4 e~if~~L~~~~i~~A~~~A~~~~n~----------------~LA~Llsq~-~~~~-----------~~r~~~~~QL~~W~ 55 (290)
T PF12110_consen 4 EKIFLLLSGHDIEEACELAIDSGNP----------------HLATLLSQI-GGDP-----------AVRSLAKQQLEDWR 55 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHTT-H----------------HHHHHHHHT-S--H-----------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCc----------------hHHHHHHHh-cCCH-----------HHHHHHHHHHHHHH
Confidence 4688899999999999999977554 334556555 2211 13455556677777
Q ss_pred HHHHHhhccchhhhccccccHHhHHHHHHHhcCCchHHhhhh-------ccHHHHHHHhhheecCCccccchhHHHHHHH
Q 005163 309 AQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLT-------CHWMELYIAHFLYIRPFTVGLESMYGLAQKC 381 (710)
Q Consensus 309 ~~~~~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd~~~i~~~~-------~~WyE~l~a~lly~~P~~~~~e~l~~~a~~~ 381 (710)
+. + ....+.+.+..|+++|+|+........ =+|...+..++.|..|..... .+.++..
T Consensus 56 ~~------~------~~~~I~~~~~~iY~LLAG~~~~~~~~~~~~~~~~LdW~~~lgl~lwY~~~~~~sl---~~~v~~y 120 (290)
T PF12110_consen 56 ES------G------ADSFIDEPRRKIYELLAGNVFWSSGNKGINICEGLDWKRALGLHLWYGDPPDASL---EDAVQSY 120 (290)
T ss_dssp SS------S------S--SS-HHHHHHHHHHHS-SSSSTT-SGGG-GGTS-HHHHHHHHHHTTTTSSS-H---HHHHHHH
T ss_pred hC------C------CCeecCHHHHHHHHHhcCCCcccccccccccCCCCCHHHHHHHHHhCCCCCCCCH---HHHHHHH
Confidence 22 1 012366889999999999988765442 499999999999999875543 3333333
Q ss_pred HHhCCC-------------------CcCCchHHHHH---HHH---ccCHHHHHHHHhh---ccCcchHHHHHHHHHcCCC
Q 005163 382 IQLKPM-------------------AASHRLMGLLI---GIL---GENIEVVLAECSK---GFGPWMVTHAIEVLTAGSH 433 (710)
Q Consensus 382 ~~~~~~-------------------~~~~~ld~il~---~il---e~d~~~vL~~~~~---~ld~W~aaHl~dLL~~~g~ 433 (710)
.+.+.. +...+..+++. .++ ..++..+|.-++. .+|.-++=|+.-+|...|.
T Consensus 121 ~~~~~~~~~~~P~P~y~~~~~~~~~~~~~~~~D~~~~LLkly~~~~~~l~~~L~p~~~s~~~lD~~l~W~l~~~L~~~~~ 200 (290)
T PF12110_consen 121 EEAFSKGEAAPPLPPYAERNSSWDDSNSEPREDLLYHLLKLYADRSHSLEQVLNPLSSSPSPLDYRLSWHLYQVLRALGY 200 (290)
T ss_dssp HHHS--------------------------TT-HHHHHHHHH-HSGTTHHHHHHHHHTT-SSS-HHHHHHHHHHHHTTSS
T ss_pred HHHHHhhhccchhhhhhhcccccccccCCCCcCHHHHHHHhhcCCCCCHHHHhChhccCCCccCChhHhHHHHHHHHcCC
Confidence 222221 11122344433 333 3667888876543 4566777788899998874
Q ss_pred ccchhhhhhccCCCCCchhHHHHHHHHHHHccCCCcchhhhHHHhhchHh--hHHHHHHhhcc-CCCC
Q 005163 434 QADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQ--GMGLLEMLLYK-QPVD 498 (710)
Q Consensus 434 l~~~ll~~~~~~~~~~~lre~~Ll~YA~~L~s~~~LW~vai~YL~~c~~~--G~~~i~~lL~r-~Pl~ 498 (710)
... .....+.+.++||..| ...++|+-|+=.+.+-++. -...|.++|.| ++.-
T Consensus 201 ~~~-----------~~~~~d~lt~~fa~QL-e~~glw~~AlfVllhl~d~~~r~~~ir~ll~r~~~~~ 256 (290)
T PF12110_consen 201 RHD-----------SEDRADQLTLSFASQL-ESLGLWEWALFVLLHLSDDSSREQAIRELLARHIPEL 256 (290)
T ss_dssp S--------------HHHHHHHHHHHHHHH-HHTT-HHHHHHHHHT-S-HHHHHHHHHHHHHHCTGGG
T ss_pred Ccc-----------CccHHHHHHHHHHHHH-HhCCccHHHHHHHhcCCCHHHHHHHHHHHHHHhcccc
Confidence 111 1134699999999999 4789999999999985543 36677777776 4443
No 4
>PF04121 Nup84_Nup100: Nuclear pore protein 84 / 107 ; InterPro: IPR007252 Nup84p forms a complex with five proteins, including Nup120p, Nup85p, Sec13p, and a Sec13p homolog. This Nup84p complex in conjunction with Sec13-type proteins is required for correct nuclear pore biogenesis [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 3CQC_A 3CQG_A 3I4R_A 3IKO_I 3JRO_C.
Probab=97.64 E-value=0.00087 Score=80.23 Aligned_cols=304 Identities=14% Similarity=0.134 Sum_probs=142.1
Q ss_pred CcchHHHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhhHHHHHHHHHHhCCCCCccccccccccccCChhHHHHH
Q 005163 224 EPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKA 303 (710)
Q Consensus 224 ~p~FW~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~ef~~~ 303 (710)
+..||.+++.+|.+|++++|+++-+..+.+= ....|.-++.+.....++.....+ ...+-...
T Consensus 133 e~~~~~~i~~llR~G~~~eA~~lc~~~gq~w----------------rAasL~G~~~~~dp~~~~~~~~~~-~~~~G~~~ 195 (697)
T PF04121_consen 133 ERALLKYIFELLRAGRIEEAQELCRERGQPW----------------RAASLCGWQLYHDPNLDPELSDED-ERMEGNRS 195 (697)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHTT-HH----------------HHHHHHTTSB-B-TTTSGGGTTT--SS-BSBTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHH----------------HHHHHcCccccCCccccccccccc-ccccCChh
Confidence 4589999999999999999999999765431 112222343332111000000000 00111123
Q ss_pred HHHHHHHHHHhhccchhhhccccccHHhHHHHHHHhcCCchHHhhhh-ccHHHHHHHhhhee------------cCCcc-
Q 005163 304 WEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLT-CHWMELYIAHFLYI------------RPFTV- 369 (710)
Q Consensus 304 w~~W~~~~~~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd~~~i~~~~-~~WyE~l~a~lly~------------~P~~~- 369 (710)
..-||..|-++..+.. +.+.=+-|+..|+||-+.....| .+|-+.+-+++==. .|...
T Consensus 196 r~LWk~~c~~ls~~~~--------~~~yEraiY~~L~G~~~~~l~~~~~sWeD~lwa~~n~~l~~~~d~~l~~~~~~~~~ 267 (697)
T PF04121_consen 196 RALWKRACYKLSQNPN--------LDPYERAIYGALSGDLSSVLPVCSSSWEDYLWAYLNALLESRVDQELRSHCPKSSE 267 (697)
T ss_dssp HHHHHHHHHHHHHTSS--------S-HHHHHHHHHHHTS---HHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTSS-GG
T ss_pred HHHHHHHHHHHHhCCC--------CCHHHHHHHHHHhcccHhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 7789999987643221 34667999999999999999999 99999987764210 01111
Q ss_pred -----cc------chhHHHHHHH----HHhCCCCcCCchHHHHHHHHccCHHHHHHHHhhcc---------------Cc-
Q 005163 370 -----GL------ESMYGLAQKC----IQLKPMAASHRLMGLLIGILGENIEVVLAECSKGF---------------GP- 418 (710)
Q Consensus 370 -----~~------e~l~~~a~~~----~~~~~~~~~~~ld~il~~ile~d~~~vL~~~~~~l---------------d~- 418 (710)
+. .++..+++.- -...+....+|+-.+..+||-+++..++..+...+ ++
T Consensus 268 ~~~~lP~~~~~~~~~~~~il~~L~~~~~~~~~~ea~~p~r~iq~~ii~~~i~~ll~~~~~~L~~~~~~~~~~~~~~~~~~ 347 (697)
T PF04121_consen 268 ELLPLPSPQWNQERSLESILNELSSSSNERVREEARNPYRVIQAAIILNDIDSLLESFAEWLSDAAKGSEDSNDLLEDPH 347 (697)
T ss_dssp G-S------------HHHHHHHH----HHHSHHHHHSTTHHHHHHHHCS-HHHHHHHHHHCTHH-----------TTSHH
T ss_pred hhccCCchhhhhcccHHHHHHHHHhccchhHHHHhhChHHHHHHHHHHccHHHHHHHHHHHHHhhcccccccccccccHh
Confidence 00 0122333221 01112223457778889999999999998764433 11
Q ss_pred --chHHHHHHHHHcCCCccchhhhhhccCCCCCchhHHHHHHHHHHHccCCCcchhhhHHHhh-chHhhHHHHHHhhccC
Q 005163 419 --WMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTS-CIKQGMGLLEMLLYKQ 495 (710)
Q Consensus 419 --W~aaHl~dLL~~~g~l~~~ll~~~~~~~~~~~lre~~Ll~YA~~L~s~~~LW~vai~YL~~-c~~~G~~~i~~lL~r~ 495 (710)
=|.||++=+|...|. ... . ...-++-.+..|.+.|..+. +..+-.=|.+. .++......+.+|..+
T Consensus 348 ~LRf~aHl~L~lr~l~~--------~~~-~-~~~~~~~II~~Yi~~L~~~~-~~~LIplY~S~L~~~~~~e~ys~~L~~i 416 (697)
T PF04121_consen 348 LLRFLAHLILFLRSLGP--------SDQ-E-DDSDKENIITAYISYLRSAG-LYELIPLYASFLPEERAIEVYSRFLISI 416 (697)
T ss_dssp HHHHHHHHHHHHHHHST---------TS-S--HHHHHHHHHHHHHHHHHTT--GGGHHHHHTTGGGGGG-----------
T ss_pred HHHHHHHHHHHHHHhcC--------cCc-c-chhHHHHHHHHHHHHHHHCC-CcccHHHHHccCCHHHHHHHHHHHHHhc
Confidence 255666644444332 000 0 01113448999999998764 67888888887 4557788999999887
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----------------------hcCCchHHHHHHHHcCChHHHH
Q 005163 496 PVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNW----------------------KHGKKGSGVYWLQQARDEARLN 553 (710)
Q Consensus 496 Pl~te~~~~k~l~iC~~~~L~~va~~I~k~~g~~~~----------------------~~g~~g~AL~w~~rA~D~~~v~ 553 (710)
. +...=.+.|++++++||+- ..|+|....+.+ ...+...|+.|+.-.+.+..+=
T Consensus 417 ~--d~~~R~~~L~la~~~gld~--~~i~k~~v~~v~~~~~~~~~~~~~~~~~~~~vs~~D~~lI~sleWL~~~~~~~eAl 492 (697)
T PF04121_consen 417 T--DPEEREKQLELAKKLGLDV--SAILKRTVERVFEDTESKYPPENDISVDDDEVSEEDERLIRSLEWLFDPEQYPEAL 492 (697)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHSGGGHHHHH
T ss_pred C--ChHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHhccccccccCccccccCCCCCHHHHHHHHHHHHHcCcccHHHHH
Confidence 4 2233356899999999973 333333333322 1125677888883333333333
Q ss_pred HHHHHHHHHHhccC
Q 005163 554 RIAQQMFDSVGRSI 567 (710)
Q Consensus 554 ~iad~ll~~y~~~~ 567 (710)
..+..++..+...|
T Consensus 493 ~~~n~l~R~FL~~g 506 (697)
T PF04121_consen 493 KQANALYRRFLLNG 506 (697)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 33566666666654
No 5
>KOG1964 consensus Nuclear pore complex, rNup107 component (sc Nup84) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.36 Score=56.29 Aligned_cols=297 Identities=16% Similarity=0.132 Sum_probs=172.6
Q ss_pred cchHHHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhhHHHHHHHHHHhC--CCCCccccccccccccCChhHHHH
Q 005163 225 PKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKM--PRMRPELEAGKLGECFKAKPDFMK 302 (710)
Q Consensus 225 p~FW~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~m--P~~~~~~~~g~~g~~~~s~~ef~~ 302 (710)
-.|-++++.++.-|.+++|.++=+..+..- ..++-+..+.+ |...... - .+..++..
T Consensus 221 ~~~~k~~F~LIRaG~~deal~Lck~~G~~w-------------r~A~LqG~~~y~dPnl~i~~-----E---~~~~eGn~ 279 (800)
T KOG1964|consen 221 QRFFKYIFELIRAGETDEALELCKRLGNGW-------------RAAILQGISEYRDPNLDIPL-----E---ASPQEGNK 279 (800)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHhCcHH-------------HHHHHHHHHHhhCCCccchh-----h---hCcccCCc
Confidence 369999999999999999999988654331 11111222211 3222111 1 27788888
Q ss_pred HHHHHHHHHHHhhccchhhhccccccHHhHHHHHHHhcCCchHHhhhhcc-HHHHHHHhhhe-----------ecCCccc
Q 005163 303 AWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCH-WMELYIAHFLY-----------IRPFTVG 370 (710)
Q Consensus 303 ~w~~W~~~~~~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd~~~i~~~~~~-WyE~l~a~lly-----------~~P~~~~ 370 (710)
+.+-||..|-.|..... ..+.=+-++..|+|+-..+.-.|.+ |-+.+=|++=- ..|....
T Consensus 280 ~k~lwrrs~~~ltq~k~--------~d~YeRA~y~~lSG~l~nl~~l~~s~Wed~vWAy~n~~v~~~ie~~l~~a~~~~t 351 (800)
T KOG1964|consen 280 YKRLWRRSCYQLTQEKS--------QDSYERAIYGALSGILGNLLPLLKSGWEDKVWAYLNSMVQARIEAYLGAAPLNET 351 (800)
T ss_pred HHHHHHHHHHHHHHhhc--------cChHHHHHHHHHhccccchhhHHhcchHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 89999999976643222 1244588999999999999887766 98888776421 1111110
Q ss_pred cc----------h----hHHHHHHHHHhCCCCcCCchHHHHHHHHccCHHHHHHHHhhcc--C-c--------chHHHHH
Q 005163 371 LE----------S----MYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGF--G-P--------WMVTHAI 425 (710)
Q Consensus 371 ~e----------~----l~~~a~~~~~~~~~~~~~~ld~il~~ile~d~~~vL~~~~~~l--d-~--------W~aaHl~ 425 (710)
.+ . +.++-.......+.-..++++.+...++.+++..++....+.+ | + =+.+|++
T Consensus 352 q~~p~~~~~~~lT~e~ifeEL~~~~~a~v~~ea~~~i~ilq~~lIld~~~~li~s~~~~l~~~~ng~~~p~lLRimtHlv 431 (800)
T KOG1964|consen 352 QETPSDLFNGPLTSELIFEELRNEADARVEEEAQHPIDILQNHLILDLIKELIESVVEWLEKDRNGQVPPHLLRIMTHLV 431 (800)
T ss_pred CCChhhhcCCcCcHHHHHHHHHHHhhhcchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHH
Confidence 00 0 1233222222333334567888999999999998887765432 1 1 2456666
Q ss_pred HHHHcCCCccchhhhhhccCCCCCchhHHHHHHHHHHHccCCCcchhhhHHHhhchHh-hHHHHHHhhccCCCCCHHHHH
Q 005163 426 EVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQ-GMGLLEMLLYKQPVDHNQLLL 504 (710)
Q Consensus 426 dLL~~~g~l~~~ll~~~~~~~~~~~lre~~Ll~YA~~L~s~~~LW~vai~YL~~c~~~-G~~~i~~lL~r~Pl~te~~~~ 504 (710)
=.+...|. .. ...-.+-.+..|-+-|... +.-++..=|-.+-|+. -....+.+|..+ ++++.=+
T Consensus 432 lfl~~~G~---------~~---~E~~s~~II~~YieLL~~~-g~~~lia~Yt~~L~e~l~l~~ys~fL~sV--de~e~R~ 496 (800)
T KOG1964|consen 432 LFLRISGL---------EV---NEDGSAKIILTYIELLARS-GHKNLIAFYTRFLPEDLQLEAYSRFLESV--DEDEERE 496 (800)
T ss_pred HHHHHhCC---------Cc---cccchHHHHHHHHHHHHhc-CCcchhHHHHHhCCchhhHHHHHHHHHHc--CChhHHH
Confidence 55555552 11 1233788999999888863 2445555555554432 245566666544 3444455
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHhc----C--------------------CchHHHHHHHHc-CChHHHHHHHHHH
Q 005163 505 KNLEICRLYELDSVSSNIMKIAGMYNWKH----G--------------------KKGSGVYWLQQA-RDEARLNRIAQQM 559 (710)
Q Consensus 505 k~l~iC~~~~L~~va~~I~k~~g~~~~~~----g--------------------~~g~AL~w~~rA-~D~~~v~~iad~l 559 (710)
+.++.+.+.+|+ ++ .|+++.-++-.++ | +...++.|.++. .-..-+-+-++.+
T Consensus 497 ~~le~akq~~LD-v~-~ia~~~ve~Ir~e~~~~~E~~~~d~~~~l~sgv~~~d~~~I~~leWLv~~p~q~~e~l~s~nai 574 (800)
T KOG1964|consen 497 IQLELAKQADLD-VG-RIARTTVENIRKEDKTVGEESHIDHWPWLLSGVEEIDLALIEELEWLVRKPMQRTEALESANAI 574 (800)
T ss_pred HHHHHHHHcCCC-HH-HHHHHHHHHHHHhccCccccccccchHHHhcccCHHHHHHHHHHHHHHhhHHHhhHHHHHHHHH
Confidence 589999999995 33 3333333333222 1 345678888876 2222222333355
Q ss_pred HHHHhccC
Q 005163 560 FDSVGRSI 567 (710)
Q Consensus 560 l~~y~~~~ 567 (710)
...|..++
T Consensus 575 ~RkfL~~~ 582 (800)
T KOG1964|consen 575 IRKFLASG 582 (800)
T ss_pred HHHHHhcc
Confidence 55555554
No 6
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.91 E-value=5.8 Score=47.76 Aligned_cols=360 Identities=13% Similarity=0.072 Sum_probs=194.2
Q ss_pred cchHHHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhhHHHHHHHHHHhC-CCCCccccccccccccCChhHHHHH
Q 005163 225 PKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKM-PRMRPELEAGKLGECFKAKPDFMKA 303 (710)
Q Consensus 225 p~FW~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~m-P~~~~~~~~g~~g~~~~s~~ef~~~ 303 (710)
-.-|+.|+-++=+|.++.|.+.|+..+.+ ++.+.++...+ -.+.... .+ ..+.+.
T Consensus 326 ~P~W~~vyy~lR~G~lk~A~~~l~e~~~~--------------~~~l~~~f~~y~~A~~~~~-~~------~le~ql--- 381 (835)
T KOG2168|consen 326 VPLWPLVYYLLRCGDLKAASQFLNENKDF--------------FEKLAELFPTYFNAYAKNL-SS------KLEKQL--- 381 (835)
T ss_pred ccchHHHHHHHhhhhHHHHHHHHHHhhhh--------------HHHHHHHHHHHHHhhhcCC-Cc------cccHHH---
Confidence 35699999999999999999999987554 33344444332 1111100 00 123332
Q ss_pred HHHHHHHHHHhhccchhhhccccccHHhHHHHHHHhcC-----CchHHhhhhccHHHHHHHhhheecC-Ccc-ccc-hhH
Q 005163 304 WEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLG-----NTNNLCTLTCHWMELYIAHFLYIRP-FTV-GLE-SMY 375 (710)
Q Consensus 304 w~~W~~~~~~L~~~~f~~~~~~~~~~~~L~~ll~IL~G-----d~~~i~~~~~~WyE~l~a~lly~~P-~~~-~~e-~l~ 375 (710)
--+|+.+.- . ..+++.=+-+++||.| +-.+++...+||.=+=...+-...- +.. ..+ .+.
T Consensus 382 rl~~~~~l~--~----------~~~DpyK~AvY~iig~cd~~~~~~ev~~tiED~LW~kL~~ir~~~~~sds~~~~~~~~ 449 (835)
T KOG2168|consen 382 RLRLRSELG--R----------NSTDPYKLAVYKIIGGCDLRRDLPEVADTIEDFLWFKLSLIRVDDQGSDSPTDELFLL 449 (835)
T ss_pred HHHHHHHhc--c----------ccCChHHHHHHHHHhcCccccccHHHHhHHHHHHHHHHHheeecCCCCcchHHhhhhH
Confidence 224443310 0 1145677889999999 3444677777754332222222221 111 011 134
Q ss_pred HHHHHHHHhCCCC-----cCCchHHHHHHHHccCHHHHHHHHhhccC-cchHHHHHHHHHcCCCccchhhhh-----hcc
Q 005163 376 GLAQKCIQLKPMA-----ASHRLMGLLIGILGENIEVVLAECSKGFG-PWMVTHAIEVLTAGSHQADTLLHE-----ERD 444 (710)
Q Consensus 376 ~~a~~~~~~~~~~-----~~~~ld~il~~ile~d~~~vL~~~~~~ld-~W~aaHl~dLL~~~g~l~~~ll~~-----~~~ 444 (710)
++.+..+..++++ ...|.-=...=.+.|-.+.+|..+..... ..=|+|+|=.|...|++...--.. ...
T Consensus 450 ~~~~~il~~YG~sYFt~ng~~p~~Yf~~LlLsgqfe~AI~fL~~~~~~~~dAVH~AI~l~~lglL~~~~s~~~~ll~~d~ 529 (835)
T KOG2168|consen 450 EDQKDILEAYGESYFTNNGSQPLLYFQVLLLSGQFERAIEFLHREEPNRIDAVHVAIALAELGLLRTSSSTSQELLSIDP 529 (835)
T ss_pred HHHHHHHHHhHHHhhccCCCChHHHHHHHHHHHhHHHHHHHHHhhcCCcchhHHHHHHHHHhhhhccCCCCCCcccccCC
Confidence 5556666666542 12232212222345666777776643332 357889998887777543221000 011
Q ss_pred CCCCCc--h-hHHHHHHHHHHHccCCCcchhhhHHHhh--ch--HhhHHHHHHhhccCCCCCHHHHHHHHH---------
Q 005163 445 NLGGIS--M-EELHRLVYAQVLSSHPLTWQIAPIYLTS--CI--KQGMGLLEMLLYKQPVDHNQLLLKNLE--------- 508 (710)
Q Consensus 445 ~~~~~~--l-re~~Ll~YA~~L~s~~~LW~vai~YL~~--c~--~~G~~~i~~lL~r~Pl~te~~~~k~l~--------- 508 (710)
+..... + --.++..|-+... ..-=++|.+|+-. |- .+|.......+-.+-++|++....++-
T Consensus 530 ~d~~k~~~lnf~rLi~~Ytk~fe--~~d~~~al~y~~~lr~~~d~q~~~l~l~~v~~lVl~t~~~f~~iLG~i~~dG~r~ 607 (835)
T KOG2168|consen 530 NDPPKSRRLNFARLIIAYTKSFE--YTDTRVALQYYYLLRLNKDPQGSNLFLKCVCELVLETEEEFDLILGKIKPDGSRE 607 (835)
T ss_pred CCCcccccccHHHHHHHHHHHHH--hccchhhhheeeeecccCChhHHHHHHHHHHHHHHhccccHHHHhcccCCCCCCC
Confidence 111111 2 2445666666532 2233566666653 42 355544444444444555444444443
Q ss_pred ---HHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHHHHHHHHHHhccCC-cchhhh-hHHHHHhc-
Q 005163 509 ---ICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSIS-DENFRQ-WEGLIQLL- 582 (710)
Q Consensus 509 ---iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~iad~ll~~y~~~~s-~~~~~~-~~dll~~l- 582 (710)
+-+-..+.+--++|.-..|.++-..|+|+.|+.-+-+|||++.+=.+.+..|.+.+-+.. +.++.+ ..+++.++
T Consensus 608 ~G~l~~f~~~~~~~~~i~~~vA~~a~~~G~~~~sI~LY~lag~yd~al~link~LS~~l~~~~~~~~n~erl~~La~~~~ 687 (835)
T KOG2168|consen 608 PGLLDEFLPLIEDLQKIILEVASEADEDGLFEDAILLYHLAGDYDKALELINKLLSQVLHSPTLGQSNKERLGDLALSMN 687 (835)
T ss_pred cchHhhhccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHH
Confidence 111222234567788889999999999999999999999999999999888877655421 111111 12333322
Q ss_pred ------CC--CccccCcchhhHhHHHHHHHHHhhhcCCchHHHHHHHHHHHHhhc
Q 005163 583 ------GS--EPKTAGGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMK 629 (710)
Q Consensus 583 ------~~--~~~~s~~L~FL~kY~eF~~~~~~~~~g~~~~~~r~Aa~~Lv~Ll~ 629 (710)
+. +...--.+.-|-+|..|++.|.+ |+ +.+|.+.|-+|--
T Consensus 688 ~~y~~~~~~~~~~~~~t~~lLl~~~~~f~~y~~---~~----~e~aL~~le~l~L 735 (835)
T KOG2168|consen 688 DIYESNKGDSAKVVVKTLSLLLDLVSFFDLYHN---GE----WEEALSILEHLDL 735 (835)
T ss_pred HHHHhccCcchhhHHHHHHHHHHHHHHHHHHhh---hH----HHHHHHHHHHHhc
Confidence 11 11111245558888888888865 54 4466777766654
No 7
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.75 E-value=5.6 Score=47.25 Aligned_cols=424 Identities=12% Similarity=0.092 Sum_probs=199.9
Q ss_pred CCcchHHHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhhHHHHHHHHHHhCCCCCccccccccccccCChhHHHH
Q 005163 223 DEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMK 302 (710)
Q Consensus 223 ~~p~FW~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~ef~~ 302 (710)
....-|..|+=|+=.|..++|.+....+..... . .-..+...++.+-.... +.... .....+
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~----~------~~~~f~~~l~~~~~s~~----~~l~~--~~~~~l-- 171 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQ----K------IERSFPTYLKAYASSPD----RRLPP--ELRDKL-- 171 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-----T------TTTHHHHHHHHCTTTTS----S---T--CCCHHH--
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhc----c------hhHHHHHHHHHHHhCCC----CCCCH--HHHHHH--
Confidence 355789999999999999999999954432221 1 11234455555532211 10000 122222
Q ss_pred HHHHHHHHHHHhhccchhhhccccccHHhHHHHHHHhcCCch------HHhhhhccHHHHHHHhhheecCCcc----ccc
Q 005163 303 AWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTN------NLCTLTCHWMELYIAHFLYIRPFTV----GLE 372 (710)
Q Consensus 303 ~w~~W~~~~~~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd~~------~i~~~~~~WyE~l~a~lly~~P~~~----~~e 372 (710)
..+|+..++.... .++.=.-+++||.+-+- .|+...+||.=+=....--..+... ..
T Consensus 172 -~~ey~~~~r~~~~-----------~DpyK~AvY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~- 238 (613)
T PF04097_consen 172 -KLEYNQRIRNSTD-----------GDPYKRAVYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERY- 238 (613)
T ss_dssp -HHHHHHHTTT-TT-----------S-HHHHHHHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----
T ss_pred -HHHHHHHhcCCCC-----------CChHHHHHHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccc-
Confidence 3344444221110 03555677888854433 3455667765332232222332222 12
Q ss_pred hhHHHHHHHHHhCCCC----cCCchHHHHHHHHccCHHHHHHHHhh-ccCcchHHHHHHHHHcCCCccchhhhhhccCCC
Q 005163 373 SMYGLAQKCIQLKPMA----ASHRLMGLLIGILGENIEVVLAECSK-GFGPWMVTHAIEVLTAGSHQADTLLHEERDNLG 447 (710)
Q Consensus 373 ~l~~~a~~~~~~~~~~----~~~~ld~il~~ile~d~~~vL~~~~~-~ld~W~aaHl~dLL~~~g~l~~~ll~~~~~~~~ 447 (710)
.+..+-+ .+..+++. ..+++-=.-+=++.|-.+.+|..+.. ....-=++|+|=.|+..|++...- ....+...
T Consensus 239 ~L~~LQ~-~i~~~Ge~~F~~~~~p~~Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~-~~~~~lls 316 (613)
T PF04097_consen 239 TLEDLQK-LILKYGESHFNAGSNPLLYFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSD-SSSAPLLS 316 (613)
T ss_dssp -HHHHHH-HHHHH-GGGCTT------HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------
T ss_pred cHHHHHH-HHHHhchhhcccchhHHHHHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCC-ccccceee
Confidence 1444333 33344432 22333333344678999999998854 234567889999998888633210 00000000
Q ss_pred --C---Cch-hHHHHHHHHHHHccCCCcchhhhHHHhh-chH---hhHHHHHHhhccCCCCCHH----------------
Q 005163 448 --G---ISM-EELHRLVYAQVLSSHPLTWQIAPIYLTS-CIK---QGMGLLEMLLYKQPVDHNQ---------------- 501 (710)
Q Consensus 448 --~---~~l-re~~Ll~YA~~L~s~~~LW~vai~YL~~-c~~---~G~~~i~~lL~r~Pl~te~---------------- 501 (710)
. ..+ ==-++..|....- .+==+.|++|+.. |.. .|...-.+.+.++-++|.+
T Consensus 317 ~~~~~~~~ln~arLI~~Y~~~F~--~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~ 394 (613)
T PF04097_consen 317 VDPGDPPPLNFARLIGQYTRSFE--ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTP 394 (613)
T ss_dssp ----------HHHHHHHHHHTTT--TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE
T ss_pred ecCCCCCCcCHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCcccc
Confidence 0 000 0124445555332 3334679999986 432 3444444444433333221
Q ss_pred -HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHHHHHHHHHHhccCCc----chh-hhh
Q 005163 502 -LLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISD----ENF-RQW 575 (710)
Q Consensus 502 -~~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~iad~ll~~y~~~~s~----~~~-~~~ 575 (710)
-+++=+.+-.-...++..++|....|.++-.+|++..|+.-+..|++.+.|=.+.+..|.+.+...+. ... .++
T Consensus 395 G~i~~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l 474 (613)
T PF04097_consen 395 GLIERRLSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERL 474 (613)
T ss_dssp -HHHHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSH
T ss_pred ceeeccccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhH
Confidence 13332222222344678999999999999999999999999999999999999999988877655322 011 011
Q ss_pred ----HHHHHhcCCCcc----cc----CcchhhHhHHHHHHHHHhhhcCCchHHHHHHHHHHHHhhcCCCCchhcHHHHHH
Q 005163 576 ----EGLIQLLGSEPK----TA----GGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPLLH 643 (710)
Q Consensus 576 ----~dll~~l~~~~~----~s----~~L~FL~kY~eF~~~~~~~~~g~~~~~~r~Aa~~Lv~Ll~s~~~Pk~fw~~LL~ 643 (710)
..+++....... .+ ..+.-|-+-.+|+.+|.+ |++. +|.+.+- +-++.|...-- .-
T Consensus 475 ~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~---g~~~----~AL~~i~---~L~liP~~~~~--V~ 542 (613)
T PF04097_consen 475 IELAKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHA---GQYE----QALDIIE---KLDLIPLDPSE--VR 542 (613)
T ss_dssp HHHHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHT---T-HH----HHHHHHH---HTT-S-S-HHH--HH
T ss_pred HHHHHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHc---CCHH----HHHHHHH---hCCCCCCCHHH--HH
Confidence 123332222211 11 223447788888888865 6654 3444443 34577732211 22
Q ss_pred HHHhhccCCCC---CcccHHHHHHHHHHHHHHHhhhcCCCCcCCCCccchHHHHH
Q 005163 644 DSLKLLNWEER---PLLNVLQTNLLLNKLQELSIARLRPDFIEADLPPHALSSVR 695 (710)
Q Consensus 644 dalpLLe~~~~---~~fs~~qt~~LL~~LEel~~~~~~~~~~~~~~~~~~l~~vR 695 (710)
...--+..-+. ..| .+=....|.||-++........+++... .+.++.+|
T Consensus 543 ~~a~~f~~l~~~V~~~l-p~lLl~~M~~l~~~~~~~~~~~~~~~~~-~~~l~~lr 595 (613)
T PF04097_consen 543 RCAENFRQLDDEVRRNL-PDLLLAAMDCLSRLYQRLKTSSYGSSSR-QQQLDELR 595 (613)
T ss_dssp HHHHCGCCS-HHHHTTH-HHHHHHHHHHHHHHHHHHHSTT---TTH-HHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCccc-HHHHHHHH
Confidence 22222322111 122 2335667888877666544333322211 44444444
No 8
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=67.84 E-value=13 Score=34.64 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHH------HHhc-CCchHHHHHHHHcCChHHHHHHH
Q 005163 499 HNQLLLKNLEICRLYELDSVSSNIMKIAGMY------NWKH-GKKGSGVYWLQQARDEARLNRIA 556 (710)
Q Consensus 499 te~~~~k~l~iC~~~~L~~va~~I~k~~g~~------~~~~-g~~g~AL~w~~rA~D~~~v~~ia 556 (710)
+.-++++++++|.+.++.+.+--+++..|+. ++.+ +++..|+.++.+.+|...-..++
T Consensus 68 ~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~ 132 (140)
T smart00299 68 NHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVL 132 (140)
T ss_pred ccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHH
Confidence 3457889999999999999888888766542 2233 45666666666655555444433
No 9
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.96 E-value=2e+02 Score=36.01 Aligned_cols=131 Identities=14% Similarity=0.090 Sum_probs=78.9
Q ss_pred chHH-HHHHHHccCHHHHHHHHhhccCcchHHHHHHHHHcCCCccchhhhhhccCCCCCchhHHHHHHHHHHHccCCCcc
Q 005163 392 RLMG-LLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTW 470 (710)
Q Consensus 392 ~ld~-il~~ile~d~~~vL~~~~~~ld~W~aaHl~dLL~~~g~l~~~ll~~~~~~~~~~~lre~~Ll~YA~~L~s~~~LW 470 (710)
+.|. |..+++.||+..+++.|. -..|++.-+. +.+.| +..+.+....+|....-+.
T Consensus 489 d~d~~Is~alitgd~~~aV~~cl--~~~~~a~Ali--iA~~g---------------g~el~~~t~~~Y~~k~~~k---- 545 (1049)
T KOG0307|consen 489 DIDGLISEALITGDFKSAVELCL--EANKMADALI--IAHAG---------------GTELLESTRDKYLAKSNSK---- 545 (1049)
T ss_pred cHHHHHHHHHHhccHHHHHHHHH--hhhHHHHHHH--HHhcC---------------CHHHHHHHHHHHHHHhCCh----
Confidence 4554 458899999999999993 3556654221 12222 2223444444444333222
Q ss_pred hhhhHHHhhchHhhHHHHHHhhccCCCCCHHHHHHH-HHHHHhcCCchHHHHHHHHHHHHHHhcC-CchHHHHHHHHcCC
Q 005163 471 QIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKN-LEICRLYELDSVSSNIMKIAGMYNWKHG-KKGSGVYWLQQARD 548 (710)
Q Consensus 471 ~vai~YL~~c~~~G~~~i~~lL~r~Pl~te~~~~k~-l~iC~~~~L~~va~~I~k~~g~~~~~~g-~~g~AL~w~~rA~D 548 (710)
+.-|.+|-.. .-+..+++.-++...+.+... .++... +...++|-++|.|+...| ..-.|+.+++=+|.
T Consensus 546 ---~s~li~a~v~--~d~~~~ve~~~~k~Wke~la~i~t~~~~----~~~~elc~~Lg~rl~~~g~~~~~a~lcYi~ags 616 (1049)
T KOG0307|consen 546 ---LSRLIYAMVN--RDLDDYVETCEVKQWKETLAAICTYAQT----DEFSELCDMLGDRLENAGDLTSAAILCYICAGS 616 (1049)
T ss_pred ---HHHHHHHHHh--hhHHHHHhhcchhhHHHHHHHHHHhcch----hhHHHHHHHHHHHHhhccchhhhhhHHhhhccC
Confidence 1122233211 124455555666665555552 333332 788999999999999999 77889999999999
Q ss_pred hHHHHH
Q 005163 549 EARLNR 554 (710)
Q Consensus 549 ~~~v~~ 554 (710)
.+++-.
T Consensus 617 v~k~v~ 622 (1049)
T KOG0307|consen 617 VDKLVE 622 (1049)
T ss_pred hhhhHH
Confidence 877554
No 10
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.69 E-value=24 Score=42.61 Aligned_cols=63 Identities=11% Similarity=0.053 Sum_probs=50.9
Q ss_pred hHHHHHHhhccCCCCCHH--HHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hcCCchHHHHHHHHcC
Q 005163 484 GMGLLEMLLYKQPVDHNQ--LLLKNLEICRLYELDSVSSNIMKIAGMYNW-------KHGKKGSGVYWLQQAR 547 (710)
Q Consensus 484 G~~~i~~lL~r~Pl~te~--~~~k~l~iC~~~~L~~va~~I~k~~g~~~~-------~~g~~g~AL~w~~rA~ 547 (710)
-...|.+++.+.+ ..+. +++-+++||++++..+.|.-+++.+++.-+ ..|+|-+|+.|....-
T Consensus 446 d~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 446 DVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred chHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 3667889999888 4333 588899999999999999999999988333 3489999999987764
No 11
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=56.94 E-value=61 Score=39.64 Aligned_cols=109 Identities=18% Similarity=0.139 Sum_probs=78.2
Q ss_pred HhhHHHHHHhhcc----CCCCCHH-------HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHcCChH
Q 005163 482 KQGMGLLEMLLYK----QPVDHNQ-------LLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEA 550 (710)
Q Consensus 482 ~~G~~~i~~lL~r----~Pl~te~-------~~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~ 550 (710)
++|.++|+++..+ +|++++. -.-..+.---+++.+...+.+-+.++.-+..+|...+|+..+.+|+|+.
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~ 377 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPE 377 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHH
Confidence 5889999999987 4666655 2333677777788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCcchhhhhHHHHHhcCCCcccc-Ccch
Q 005163 551 RLNRIAQQMFDSVGRSISDENFRQWEGLIQLLGSEPKTA-GGLE 593 (710)
Q Consensus 551 ~v~~iad~ll~~y~~~~s~~~~~~~~dll~~l~~~~~~s-~~L~ 593 (710)
....+.++. ..-...++ .+.-+...++.++.++..+ |+|.
T Consensus 378 ~aa~lle~~-~~~L~~~~--~lsll~~~~~~lP~~~l~~~P~Lv 418 (894)
T COG2909 378 MAADLLEQL-EWQLFNGS--ELSLLLAWLKALPAELLASTPRLV 418 (894)
T ss_pred HHHHHHHhh-hhhhhccc--chHHHHHHHHhCCHHHHhhCchHH
Confidence 988876555 21122221 1222345556666655443 6653
No 12
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=56.43 E-value=25 Score=37.06 Aligned_cols=93 Identities=12% Similarity=0.144 Sum_probs=60.1
Q ss_pred CCchhHHHHHHHHHHHccCCCcchhhhHHHhhchHhhHHHHHHhhccCCCCCHH---HHHHHHHHHHhcCCchHHHHHHH
Q 005163 448 GISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQPVDHNQ---LLLKNLEICRLYELDSVSSNIMK 524 (710)
Q Consensus 448 ~~~lre~~Ll~YA~~L~s~~~LW~vai~YL~~c~~~G~~~i~~lL~r~Pl~te~---~~~k~l~iC~~~~L~~va~~I~k 524 (710)
+..|.-+++-.|-..- ..|.+..+.++.+++..+|-++.. =+.+++...+.-+-+.=--.+..
T Consensus 29 g~DL~~lliev~~~~~--------------~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~ 94 (260)
T PF04190_consen 29 GADLALLLIEVYEKSE--------------DPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHH 94 (260)
T ss_dssp HHHHHHHHHHHHHHTT-----------------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHH
T ss_pred HHHHHHHHHHHHHHcC--------------CCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHH
Confidence 4566666666666510 014556678999999999876533 24445666622222223457999
Q ss_pred HHHHHHHhcCCchHHHHHHHHcCChHHHHH
Q 005163 525 IAGMYNWKHGKKGSGVYWLQQARDEARLNR 554 (710)
Q Consensus 525 ~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~ 554 (710)
++|...+++|+|.+|-.+++.+.|......
T Consensus 95 ~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~ 124 (260)
T PF04190_consen 95 LLAEKLWKEGNYYEAERHFLLGTDPSAFAY 124 (260)
T ss_dssp HHHHHHHHTT-HHHHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChhHHHH
Confidence 999999999999999999999999988765
No 13
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=49.41 E-value=1.4e+02 Score=29.57 Aligned_cols=59 Identities=12% Similarity=-0.030 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHcCChH-HHHHHHHHHHH
Q 005163 503 LLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEA-RLNRIAQQMFD 561 (710)
Q Consensus 503 ~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~-~v~~iad~ll~ 561 (710)
++.=+.-.++..-.+..+....-.|....+-|++.+|+.++.|+.|.. ..+.+.|..|.
T Consensus 19 Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~ 78 (177)
T PF10602_consen 19 LEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLN 78 (177)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 333456666666666778888899999999999999999999999987 46667777664
No 14
>PF11237 DUF3038: Protein of unknown function (DUF3038); InterPro: IPR021399 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=44.21 E-value=89 Score=30.99 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=31.2
Q ss_pred chHhhHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCchHH
Q 005163 480 CIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVS 519 (710)
Q Consensus 480 c~~~G~~~i~~lL~r~Pl~te~~~~k~l~iC~~~~L~~va 519 (710)
|+..++..++.+|.-+.-=+.-.-|-++..|.+.||..+-
T Consensus 1 ~~~~~~~~LDLlLLAlEaL~~~gsEaml~~a~~L~L~~~~ 40 (171)
T PF11237_consen 1 CLRRIREQLDLLLLALEALDLNGSEAMLWAAQQLGLQSII 40 (171)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCcccc
Confidence 8889999999998765443444567789999999998863
No 15
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.40 E-value=53 Score=39.84 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=47.7
Q ss_pred HHHHHHhcCCch-HHHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHHHHHHHH
Q 005163 506 NLEICRLYELDS-VSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFD 561 (710)
Q Consensus 506 ~l~iC~~~~L~~-va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~iad~ll~ 561 (710)
++.+++..+++. ..++|++.+|..+.+.|++.+|+.|++++=+.--...|...+|+
T Consensus 353 Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLd 409 (933)
T KOG2114|consen 353 AINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLD 409 (933)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcC
Confidence 578888888876 57789999999999999999999999999887777777666654
No 16
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=39.83 E-value=3.8 Score=38.38 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=52.5
Q ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH------hcCCchHHHHHHHHcCChHHHHHHHHH
Q 005163 486 GLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNW------KHGKKGSGVYWLQQARDEARLNRIAQQ 558 (710)
Q Consensus 486 ~~i~~lL~r~Pl~te~~~~k~l~iC~~~~L~~va~~I~k~~g~~~~------~~g~~g~AL~w~~rA~D~~~v~~iad~ 558 (710)
..+..+|... ++-++.+++++|.++||.+.+.-++..+|+..- ..+.+-.|+.++.+.+|......+.+.
T Consensus 59 ~~l~~~L~~~---~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~ 134 (143)
T PF00637_consen 59 EKLLEFLKTS---NNYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKY 134 (143)
T ss_dssp CHHHHTTTSS---SSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHH
T ss_pred hHHHHHcccc---cccCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHH
Confidence 5566666522 235788899999999999999999998876544 457899999999999996666555433
No 17
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=38.29 E-value=1.4e+02 Score=31.91 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=28.3
Q ss_pred cHHhHHHHHHHhcCCchHHhh-h--------------hccHHHHHHHhhheecCC
Q 005163 328 TQEGLRNMLQIMLGNTNNLCT-L--------------TCHWMELYIAHFLYIRPF 367 (710)
Q Consensus 328 ~~~~L~~ll~IL~Gd~~~i~~-~--------------~~~WyE~l~a~lly~~P~ 367 (710)
..+.|+.+++++.|+...... . ..+|+|.+...+-+..|.
T Consensus 60 ~~~~L~~l~~v~~g~~~~~v~~l~~~~~~~~~~~~~~~~~Wre~lA~il~N~~~~ 114 (284)
T PF12931_consen 60 ITHLLRTLYQVFSGNSPEAVDELVPNSAAPPLEGEWDLDNWRETLAIILSNRTPE 114 (284)
T ss_dssp HHHHHHHHHHHTTT-HHHHHHHHHH-----HHHHHHHHHSHHHHHHHHHHTS---
T ss_pred hhHHHHHHHHHHcCCcHHHHHHhccccccccccccchhcCHHHHHHHHHhCCCcc
Confidence 346799999999999876532 1 347999999999887764
No 18
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=36.42 E-value=1.4e+02 Score=34.13 Aligned_cols=48 Identities=23% Similarity=0.149 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHH
Q 005163 503 LLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNR 554 (710)
Q Consensus 503 ~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~ 554 (710)
++-++++|.+.. ...+.|.+|..++++|++-.|-.++.|++|...+.-
T Consensus 334 L~~A~~~a~~~~----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~l 381 (443)
T PF04053_consen 334 LDIALEIAKELD----DPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLL 381 (443)
T ss_dssp HHHHHHHCCCCS----THHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHhcC----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHH
Confidence 333444444433 444889999999999999999999999999998654
No 19
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=35.78 E-value=1.7e+02 Score=28.82 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=68.7
Q ss_pred HHHHHHHHHHccC-----CCcchhhhHHHhhchHhhHHHHHHhhccCCC-CCHHHHHHHHHHHHhc-CCchHHHHHHHHH
Q 005163 454 LHRLVYAQVLSSH-----PLTWQIAPIYLTSCIKQGMGLLEMLLYKQPV-DHNQLLLKNLEICRLY-ELDSVSSNIMKIA 526 (710)
Q Consensus 454 ~~Ll~YA~~L~s~-----~~LW~vai~YL~~c~~~G~~~i~~lL~r~Pl-~te~~~~k~l~iC~~~-~L~~va~~I~k~~ 526 (710)
..+++|-.+|..+ +.++.+-++-|...+. -..+..+|..-.+ +|..-|..++++-.++ ..-..+-.+.+.+
T Consensus 11 ~vllEYirSl~~~~i~~~~~L~~lli~lLi~~~~--~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 11 AVLLEYIRSLNQHNIPVQHELYELLIDLLIRNGQ--FSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 3477888888764 6778888888877664 4456677765444 5666677787774332 1122344455555
Q ss_pred H-------HHHHhcCCchHHHHHHHHcCChHHHHHHHHHHHHHHhcc
Q 005163 527 G-------MYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRS 566 (710)
Q Consensus 527 g-------~~~~~~g~~g~AL~w~~rA~D~~~v~~iad~ll~~y~~~ 566 (710)
+ .-++.+|++.+|+.++-+.+....+. +..+|+.-.++
T Consensus 89 ~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~--~~~fLeAA~~~ 133 (167)
T PF07035_consen 89 GTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVP--ARKFLEAAANS 133 (167)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCC--HHHHHHHHHHc
Confidence 5 45788899999999987765544432 24555544443
No 20
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=35.61 E-value=52 Score=22.12 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHc
Q 005163 521 NIMKIAGMYNWKHGKKGSGVYWLQQA 546 (710)
Q Consensus 521 ~I~k~~g~~~~~~g~~g~AL~w~~rA 546 (710)
+++..+|.-..+.|++.+|+.++.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45677899999999999999999876
No 21
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=33.28 E-value=6e+02 Score=26.76 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcC-CchHHHHHHHHcCCh
Q 005163 522 IMKIAGMYNWKHG-KKGSGVYWLQQARDE 549 (710)
Q Consensus 522 I~k~~g~~~~~~g-~~g~AL~w~~rA~D~ 549 (710)
+|...|...++++ ++..|+.|+.||.|.
T Consensus 37 ~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 37 VCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 5556799999999 999999999999988
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.45 E-value=71 Score=37.52 Aligned_cols=131 Identities=20% Similarity=0.137 Sum_probs=79.6
Q ss_pred chHHHHHHHHHcCCCccch---hhhhhccCCCCCchhHHHHHHHHHHHccCCCcchhhhHHHhhchHhhHHHHHHhhccC
Q 005163 419 WMVTHAIEVLTAGSHQADT---LLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCIKQGMGLLEMLLYKQ 495 (710)
Q Consensus 419 W~aaHl~dLL~~~g~l~~~---ll~~~~~~~~~~~lre~~Ll~YA~~L~s~~~LW~vai~YL~~c~~~G~~~i~~lL~r~ 495 (710)
-..+|+...++..|.+.+. ++.+...+.-+-. -..-+++|-...|. .=...|.+.|..-|+.-|.++..+|++.
T Consensus 551 ~~v~h~~~~mylLgy~~~~~rvYL~Dke~nVi~y~-l~l~vleyqt~vmr--rd~~~a~~vLp~I~k~~rt~va~Fle~~ 627 (794)
T KOG0276|consen 551 YTVAHLDRIMYLLGYVANDNRVYLHDKELNVISYK-ILLEVLEYQTLVLR--RDLEVADGVLPTIPKEIRTKVAHFLESQ 627 (794)
T ss_pred EEEEEeccchhheeeeecCCEEEEeecccceEeEe-eehHHHHHHHHhhh--ccccccccccccCchhhhhhHHhHhhhc
Confidence 4567777777777654432 1222111211111 12235566544442 2246677778876788899999999986
Q ss_pred CCCC---------HHH---HHHH--HHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHH
Q 005163 496 PVDH---------NQL---LLKN--LEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARL 552 (710)
Q Consensus 496 Pl~t---------e~~---~~k~--l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v 552 (710)
-+.. +.+ +.|+ +.++.+.-.+.....=.|.+|.-+++.|++..|-.++.||+|...+
T Consensus 628 g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~L 698 (794)
T KOG0276|consen 628 GMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSL 698 (794)
T ss_pred cchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhh
Confidence 5532 111 3332 3444444333444445688999999999999999999999998874
No 23
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=25.85 E-value=41 Score=32.51 Aligned_cols=64 Identities=25% Similarity=0.318 Sum_probs=42.0
Q ss_pred CCCCCCeeeeCCCCCCCCeeee-cccccCCCccceeeeecCCCeeEEEeecCCCCCCCCCCCCceEEEEEcCCC
Q 005163 3 GENQGGAIVPYSEEAKKPVVYP-LRHGLKPPISRLGISWSRGNSLRVTVFRQPSEDSENEVGGKAVEVRLDGRD 75 (710)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~g~~l~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 75 (710)
|--.|++.|||-.....+.|++ |-||+.-|+. .|..-++....+...+-++ ..-.++|++...|
T Consensus 79 g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~-------age~ytY~~slpI~~~yP~--v~v~iew~L~D~d 143 (158)
T KOG4063|consen 79 GITLGSVPVPFPLPASDACVCGNLLHGVYCPLS-------AGEDYTYLNSLPITENYPE--VSVIIEWQLQDQD 143 (158)
T ss_pred eeecccEeecCCCCCCcccccccccccccCccc-------CCCceEEEEEeeccccCCc--eeEEEEEEEecCC
Confidence 4456789999999998888887 8899999986 4665555555544322111 1124556665554
No 24
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=23.30 E-value=1.1e+02 Score=21.36 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHc
Q 005163 521 NIMKIAGMYNWKHGKKGSGVYWLQQA 546 (710)
Q Consensus 521 ~I~k~~g~~~~~~g~~g~AL~w~~rA 546 (710)
..+..+|.-....|++.+|+.++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHH
Confidence 34566888888999999999998876
No 25
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=22.08 E-value=75 Score=32.10 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=36.0
Q ss_pred hhhhHHHhhchHhh-HHHHHHhhccCCCCCHHHHHHHHHHHHhcCCchH
Q 005163 471 QIAPIYLTSCIKQG-MGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSV 518 (710)
Q Consensus 471 ~vai~YL~~c~~~G-~~~i~~lL~r~Pl~te~~~~k~l~iC~~~~L~~v 518 (710)
++--+++.++.+.| ..+++++|-++.+.+= +++.++++|+++||-+.
T Consensus 23 ~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~L-Didq~i~lC~~~~Lyda 70 (196)
T PF12816_consen 23 EVFKALVEHYASKGRLERLEQLILHLDPSSL-DIDQVIKLCKKHGLYDA 70 (196)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCHHhc-CHHHHHHHHHHCCCCCe
Confidence 44445556655555 6899999999998664 57889999999999874
Done!