Query 005163
Match_columns 710
No_of_seqs 153 out of 179
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 17:18:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f3f_C Nucleoporin NUP85; stru 100.0 4.5E-67 1.5E-71 584.5 33.0 434 76-554 97-570 (570)
2 3bg1_B Nucleoporin NUP145; NPC 98.3 4.4E-05 1.5E-09 84.5 20.8 288 162-535 120-440 (442)
3 3jro_A Fusion protein of prote 98.2 4.7E-05 1.6E-09 89.7 20.8 294 162-536 429-750 (753)
4 3iko_C Nucleoporin NUP84; NPC, 95.2 0.15 5E-06 56.7 13.3 231 224-497 177-454 (460)
5 2pm7_A Protein WEB1, protein t 94.8 0.33 1.1E-05 52.9 14.3 142 330-480 204-362 (399)
6 2qx5_A Nucleoporin NIC96; mRNA 91.4 19 0.00064 41.6 22.6 397 224-675 152-610 (661)
7 2pm7_A Protein WEB1, protein t 60.9 1.8E+02 0.0062 31.2 16.7 41 516-556 242-284 (399)
8 2wpv_A GET4, UPF0363 protein Y 49.7 87 0.003 32.5 10.8 84 480-564 90-177 (312)
9 3lpz_A GET4 (YOR164C homolog); 41.4 1.6E+02 0.0055 30.9 11.2 85 480-565 92-180 (336)
10 3mkq_A Coatomer beta'-subunit; 39.4 87 0.003 35.6 9.8 37 520-556 681-717 (814)
11 3mkq_B Coatomer subunit alpha; 38.0 32 0.0011 32.8 4.8 49 503-555 21-69 (177)
12 3mzk_B Protein transport prote 32.2 1.5E+02 0.005 32.4 9.5 106 224-368 150-267 (441)
13 2vkj_A TM1634; membrane protei 31.8 46 0.0016 28.1 4.1 39 527-565 60-101 (106)
14 3gw4_A Uncharacterized protein 23.0 1.3E+02 0.0044 26.9 6.1 47 502-548 48-94 (203)
15 2v5f_A Prolyl 4-hydroxylase su 21.7 57 0.0019 27.2 3.0 26 521-546 6-31 (104)
16 3ro3_A PINS homolog, G-protein 20.5 1.7E+02 0.0057 24.4 6.0 44 503-546 112-155 (164)
17 3ro3_A PINS homolog, G-protein 20.5 1.7E+02 0.0059 24.3 6.2 44 503-546 72-115 (164)
18 3i3n_A Kelch-like protein 11; 20.2 2.7E+02 0.0093 27.5 8.4 129 501-641 110-244 (279)
No 1
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=100.00 E-value=4.5e-67 Score=584.55 Aligned_cols=434 Identities=13% Similarity=0.147 Sum_probs=312.1
Q ss_pred CCCCchHHHHHHhhcchhHHhhhhhh-hcccccccccCCCCCCcHHHHHHHHHHHHHHHHhhccccCc-cc-ccccCchh
Q 005163 76 GEISDAQWRRIAYGSVSPFALLQSRK-NSFASLSKISSTTSPFDAEWWEYVLEYSKDISSLLGNQTST-TQ-SLIEDPKE 152 (710)
Q Consensus 76 ~~~~~~~lR~L~~es~~~F~~LQ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~~l~~~~~~-~~-~~~~~~~~ 152 (710)
.+-+++.-..-|+..|.||..|=.-+ .+.+-++- . +.+. ..++...--.+..+.+++++.- .. ...++ +
T Consensus 97 ~~d~s~~~~~Yv~~lf~~~~~l~~~~~~~~~~iG~---i--~~~~-~~~~~~~v~~a~~~~~~~l~~~i~~~~~~~~--~ 168 (570)
T 3f3f_C 97 RLDTSKEFSAYVSGLFEIYRDLGDDRVFNVPTIGV---V--NSNF-AKEHNATVNLAMEAILNELEVFIGRVKDQDG--R 168 (570)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHTGGGGSCCC--------C--CSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS--C
T ss_pred CCcccHHHHHHHHHHHHHHHHhccccccCCCCcee---e--ecch-hhHHHHHHHHHHHHHHHHHHHHHHhhcccch--H
Confidence 34556888999999999998873222 11111110 0 0011 0011111123334444444320 00 00111 1
Q ss_pred hccCCccchHHHHHHHHHHHhcccCCCC------cchHHHHHHHHhhcccCCchhhhhhhhhhhhHHhhhhc------cC
Q 005163 153 VLKDPEPSNLKAAWELMESFYADKLSQA------WLPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSL------QV 220 (710)
Q Consensus 153 ~~~~~~~~~~~~iW~L~Eily~~~~~~~------~v~~~LldWvn~~d~~~~~~~e~~~~~l~~~~~ev~~~------~~ 220 (710)
+.+-.+......||++++.+|+...+++ ++.++|++|||++|+. |.+|. +++|+.. +.
T Consensus 169 ~~~~~~l~~~l~Il~cl~a~~F~~d~~~~~~~~~~~~e~Ll~WVN~~d~e--P~~E~--------~~eVm~~~~~~~~~~ 238 (570)
T 3f3f_C 169 VNRFYELEESLTVLNCLRTMYFILDGQDVEENRSEFIESLLNWINRSDGE--PDEEY--------IEQVFSVKDSTAGKK 238 (570)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHSSSTTSCGGGGHHHHHHHHHHHHHHHCCC--SCHHH--------HHHHTTC----CCSS
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHhccCC--CCHHH--------HHHHHhcccccCCCC
Confidence 1000122557899999999999875543 6779999999999976 65553 4899885 99
Q ss_pred CCCCcchHHHHHHHHhcCcHHHHHHHHHhccCCccccccC-ccchhhHHHHHHHHHHhCCCCCccccccccccccCChhH
Q 005163 221 IEDEPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGN-RETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPD 299 (710)
Q Consensus 221 p~~~p~FW~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~-~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~e 299 (710)
|++||+||++|+++|+||+++||+++|+.++ + ...+++ ++....+++.++.||++||+++.
T Consensus 239 P~eHp~FW~~v~~LvLRGl~~qA~~~L~~s~-~-~~~L~~~~~~~~~~i~dli~LL~~yP~~S~---------------- 300 (570)
T 3f3f_C 239 VFETQYFWKLLNQLVLRGLLSQAIGCIERSD-L-LPYLSDTCAVSFDAVSDSIELLKQYPKDSS---------------- 300 (570)
T ss_dssp SSCSHHHHHHHHHHHHTTCHHHHHHHHTTTT-T-THHHHHSCHHHHHHHHHHHHHHTTCCSSCH----------------
T ss_pred CCCCccHHHHHHHHHHcccHHHHHHHHHhcc-c-chhhcccChHHHHHHHHHHHHHHhCCCCch----------------
Confidence 9999999999999999999999999999654 3 123322 33445789999999999998852
Q ss_pred HHHHHHHHHHHHH----HhhccchhhhccccccHHhHHHHHHHhcCCchHHhhhhccHHHHHHHhhheecCCccccchhH
Q 005163 300 FMKAWEKWRAQIA----KLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCTLTCHWMELYIAHFLYIRPFTVGLESMY 375 (710)
Q Consensus 300 f~~~w~~W~~~~~----~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd~~~i~~~~~~WyE~l~a~lly~~P~~~~~e~l~ 375 (710)
.+|++||..|. .++.+.|-++ .+++++|++|++||+|++++|+++|+||||+++|+++|++|++++ .+
T Consensus 301 --~~fr~WK~~~~e~r~~l~~~~~~i~---~ei~~~Ledll~Il~Gd~~~Il~~~~tWYEal~allLy~~Pt~k~---~~ 372 (570)
T 3f3f_C 301 --STFREWKNLVLKLSQAFGSSATDIS---GELRDYIEDFLLVIGGNQRKILQYSRTWYESFCGFLLYYIPSLEL---SA 372 (570)
T ss_dssp --HHHHHHHHHHHHHHHHHHTSCCCSC---HHHHHHHHHHHHHHHTCHHHHHHTCSSHHHHHHHHHHHTCCCGGG---HH
T ss_pred --HHHHHHHHHHHHHHHHhcccccccc---hHHHHHHHHHHHHHcCCHHHHHHHcccHHHHHhHheeeecCcccc---cH
Confidence 24888888885 3444444111 237899999999999999999999999999999999999999965 47
Q ss_pred HHHHHHHHhCCCCcCCchHHHHHHHHccCHHHHHHHHhhccCcchHHHHHHHHHcCCCccchhhh--------hhc----
Q 005163 376 GLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQADTLLH--------EER---- 443 (710)
Q Consensus 376 ~~a~~~~~~~~~~~~~~ld~il~~ile~d~~~vL~~~~~~ld~W~aaHl~dLL~~~g~l~~~ll~--------~~~---- 443 (710)
+|++.|++..|++.++.+|.++++||+||+.+||+.|+ .+|+|++||++|||+++|++.+.+-. .++
T Consensus 373 ~y~q~al~~~p~d~~~~~E~~~~~i~egni~~VL~~lq-~ld~~~AA~vAdLle~~GlLe~~~~~~~~~~~l~~~~~~~~ 451 (570)
T 3f3f_C 373 EYLQMSLEANVVDITNDWEQPCVDIISGKIHSILPVME-SLDSCTAAFTAMICEAKGLIENIFEGEKNSDDYSNEDNEML 451 (570)
T ss_dssp HHHHHHHHHSCCCTTSSSHHHHHHHHTTCCGGGHHHHH-HHCHHHHHHHHHHHHHHTSSCCCCCC--------------C
T ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHccCHHHHHHHHH-HhhHHHHHHHHHHHHHhCcccchhhhccccccccccccccH
Confidence 89999999999999999999999999999999999995 89999999999999999997653210 011
Q ss_pred -cCC-CCCchhHHHHHHHHHH--HccCCCcchhhhHHHhhchH----hhHHHHHHhhccCCCCCHHHHHHHHHHHHhcCC
Q 005163 444 -DNL-GGISMEELHRLVYAQV--LSSHPLTWQIAPIYLTSCIK----QGMGLLEMLLYKQPVDHNQLLLKNLEICRLYEL 515 (710)
Q Consensus 444 -~~~-~~~~lre~~Ll~YA~~--L~s~~~LW~vai~YL~~c~~----~G~~~i~~lL~r~Pl~te~~~~k~l~iC~~~~L 515 (710)
+.+ .+.+||||++++||.+ +++|++||||||+||++||. .||.+|+++|+|+|++|+++++|++++|+++||
T Consensus 452 d~l~s~~~~l~eyLL~~~a~~~~~~~~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L 531 (570)
T 3f3f_C 452 EDLFSYRNGMASYMLNSFAFELCSLGDKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRL 531 (570)
T ss_dssp CCSSSSSSCHHHHHHHHHHHHHHTSCCTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTC
T ss_pred hhhhcCcchHHHHHHHHHHhhcccccCCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCC
Confidence 113 3679999999999999 99999999999999999986 599999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHH
Q 005163 516 DSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNR 554 (710)
Q Consensus 516 ~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~ 554 (710)
++++++||+++|++++++|++|+||+||+|||+..+|++
T Consensus 532 ~~~ar~I~k~~g~k~l~~g~~geAL~~f~rA~~~~~Vk~ 570 (570)
T 3f3f_C 532 PEIAKEIYTTLGNQMLSAHNIIESIANFSRAGKYELVKS 570 (570)
T ss_dssp HHHHHHHHHHHHC--------------------------
T ss_pred hHHHHHHHHHHHHHHHHCccHHHHHHHHHHcCChhhccC
Confidence 999999999999999999999999999999999999874
No 2
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B
Probab=98.26 E-value=4.4e-05 Score=84.46 Aligned_cols=288 Identities=14% Similarity=0.125 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHhcccC-CCC----c---------chHHHHHHHHhhcccCCchhhhhhhhhhhhHHhhhhccCCCCCcch
Q 005163 162 LKAAWELMESFYADKL-SQA----W---------LPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKY 227 (710)
Q Consensus 162 ~~~iW~L~Eily~~~~-~~~----~---------v~~~LldWvn~~d~~~~~~~e~~~~~l~~~~~ev~~~~~p~~~p~F 227 (710)
-..+|.||.+||=+.. |.+ . -.+.|-+|+.+... +..+ +++ ....++
T Consensus 120 e~~vW~L~saLf~~~~~~~~~~~~~~~~~~~~~~Rr~~l~~WL~~~~~---~~v~----------~~~------~~~~~~ 180 (442)
T 3bg1_B 120 DYNLWKLSSILFDPVSYPYKTDNDQVKMALLKKERHCRLTSWIVSQIG---PEIE----------EKI------RNSSNE 180 (442)
T ss_dssp HHHHHHHHHHHTSCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHSH---HHHH----------HHH------HTCSCH
T ss_pred HhHHHHHHHHhcCCCcCcccccchhHHHHHHHHHHHHHHHHHHHHHHH---HHHH----------HHh------hcCCCH
Confidence 3679999999998742 211 1 11256689998731 1111 222 124688
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhhHHHHHHHHHHhCCCCCccccccccccccCChhHH-HHHHHH
Q 005163 228 WEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDF-MKAWEK 306 (710)
Q Consensus 228 W~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~ef-~~~w~~ 306 (710)
.+.|..+++.|++++|+++.-.++.+. +..||.++-... ....++ ..+-..
T Consensus 181 ~e~i~~~L~~~~v~eA~~~Ai~~~d~r----------------LA~Llsq~g~~~------------~~r~~la~~QL~~ 232 (442)
T 3bg1_B 181 IEQIFLYLLLNDVVRASKLAIESKNGH----------------LSVLISYLGSND------------PRIRDLAELQLQK 232 (442)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHH----------------HHHHHHHHTSCC------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCcH----------------HHHHHHHhcCCc------------hHHHHHHHHHHHH
Confidence 899999999999999999988775442 233443332111 134566 667788
Q ss_pred HHHHHHHhhccchhhhccccccHHhHHHHHHHhcCCc-------hHHhhhhccHHHHHHHhhheecCCccccchhHHHHH
Q 005163 307 WRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNT-------NNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQ 379 (710)
Q Consensus 307 W~~~~~~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd~-------~~i~~~~~~WyE~l~a~lly~~P~~~~~e~l~~~a~ 379 (710)
|+.. ..| +.+....|+++|+|+. -.+++ .-+|..+|..++.|..|..... .+.+.
T Consensus 233 W~~~------~~~--------I~~~~~kiY~LLAG~~~e~~~~~~~i~~-~LdW~ralgl~LWY~~~~~~si---~~av~ 294 (442)
T 3bg1_B 233 WSTG------GCS--------IDKNISKIYKLLSGSPFEGLFSLKELES-EFSWLCLLNLTLCYGQIDEYSL---ESLVQ 294 (442)
T ss_dssp TTSS------CCC--------SCHHHHHHHHHHHSCSTTSTTCSGGGGG-TSCHHHHHHHHHHTCCCSSCCH---HHHHH
T ss_pred HHHh------Ccc--------CCHHHHHHHHHhcCCcccccccchhccc-CCCHHHHHHHHhhcCCCCCCCH---HHHHH
Confidence 8733 223 5588999999999995 22333 6789999999999998865443 33333
Q ss_pred HHHHhCCCCcCCchHHHH---HHHHc--cCHHHHHHHHhh---ccCcchHHHHHHHHHcCCCccchhhhhhccCCCCCch
Q 005163 380 KCIQLKPMAASHRLMGLL---IGILG--ENIEVVLAECSK---GFGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISM 451 (710)
Q Consensus 380 ~~~~~~~~~~~~~ld~il---~~ile--~d~~~vL~~~~~---~ld~W~aaHl~dLL~~~g~l~~~ll~~~~~~~~~~~l 451 (710)
.-.+.+. .|..+++ +.++. .++..+|.-.+. .+|.-+.=|+.-+|.+.|. . ++ ....
T Consensus 295 ~f~~~~~----~P~~D~~~~LLkLya~~~~le~~L~p~s~s~~~lD~rLsW~L~~~L~a~g~-~---------~~-~~~~ 359 (442)
T 3bg1_B 295 SHLDKFS----LPYDDPIGVIFQLYAANENTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGT-R---------VF-SKET 359 (442)
T ss_dssp HHHHHSC----CCTTCHHHHHHHHHHSCTTHHHHHHHHHTTCCCSCHHHHHHHHHHHHTTSC-S---------CC-CHHH
T ss_pred HHHHhcc----CCCCCHHHHHHHHHccCCCHHHHhChhccCCCcccchhHHHHHHHHHhCCC-c---------cc-ChhH
Confidence 2222221 1222333 33332 677778865533 3455677788888888763 0 01 2345
Q ss_pred hHHHHHHHHHHHccCCCcchhhhHHHhhc--hHhhHHHHHHhhcc-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 005163 452 EELHRLVYAQVLSSHPLTWQIAPIYLTSC--IKQGMGLLEMLLYK-QPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGM 528 (710)
Q Consensus 452 re~~Ll~YA~~L~s~~~LW~vai~YL~~c--~~~G~~~i~~lL~r-~Pl~te~~~~k~l~iC~~~~L~~va~~I~k~~g~ 528 (710)
.+.+...||.+|-+ .++|+-|+=.|.+= +..=...|.++|.| ++.-++ .+---+..+++.|... |.+..+.
T Consensus 360 ~d~L~~~fA~QLe~-~Glw~wAifVllHl~d~~~Re~avr~lL~R~~~~~~~---~~~~fL~~~L~IP~~W--I~eAkAl 433 (442)
T 3bg1_B 360 SDEATFAFAAQLEF-AQLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRA---STNDHILNRLKIPSQL--IFNAQAL 433 (442)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHSTGGGST---TTTSCHHHHTTCCHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCcHHHHHHHhhCCChHHHHHHHHHHHHhhcccccc---HHHHHHHHHhCCCHHH--HHHHHHH
Confidence 89999999999995 59999999999983 33334457777776 454332 1122334566666533 3343444
Q ss_pred HHHhcCC
Q 005163 529 YNWKHGK 535 (710)
Q Consensus 529 ~~~~~g~ 535 (710)
++..+|+
T Consensus 434 ~a~~~gd 440 (442)
T 3bg1_B 434 KDRYEGN 440 (442)
T ss_dssp HHHHHHH
T ss_pred HHHhcCC
Confidence 4444443
No 3
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=98.20 E-value=4.7e-05 Score=89.72 Aligned_cols=294 Identities=13% Similarity=0.100 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHhcccC-C----CCc---------chHHHHHHHHhhcccCCchhhhhhhhhhhhHHhhhhccCCCCCcch
Q 005163 162 LKAAWELMESFYADKL-S----QAW---------LPERLVDWLADYDSLFSSTQETVHSKLVDFQKDLVSLQVIEDEPKY 227 (710)
Q Consensus 162 ~~~iW~L~Eily~~~~-~----~~~---------v~~~LldWvn~~d~~~~~~~e~~~~~l~~~~~ev~~~~~p~~~p~F 227 (710)
-..+|.||++||=+.. + ... --+.|.+|+.+.-. +..+ .++-....|
T Consensus 429 e~~~w~L~~~Lf~~~~~~~~~~~~~~~~~~~~~~r~~~~~~wl~~~~~---~~~~----------~~~~~~~~~------ 489 (753)
T 3jro_A 429 DYNLWKLSSILFDPVSYPYKTDNDQVKMALLKKERHCRLTSWIVSQIG---PEIE----------EKIRNSSNE------ 489 (753)
T ss_dssp HHHHHHHHHHHTSCCCCSSCCSSTTHHHHHHHHHHHHHHHHHHHHHHH---HHHH----------TTTTSCSCT------
T ss_pred HHHHHHHHHHHcCCCcCCccccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----------hhhhccCCH------
Confidence 5789999999994321 1 111 13356688876521 1111 111111122
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhhHHHHHHHHHHhCCCCCccccccccccccCChhHHHHHHHHH
Q 005163 228 WEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKAWEKW 307 (710)
Q Consensus 228 W~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~ef~~~w~~W 307 (710)
=+.|..+++.|++++|+++.-.+..+. +..||..+-.-.+ ........+...|
T Consensus 490 ~~~i~~~L~~~~i~~A~~~a~~~~~~~----------------la~ll~~~~~~~~-----------~~~~~~~~Ql~~W 542 (753)
T 3jro_A 490 IEQIFLYLLLNDVVRASKLAIESKNGH----------------LSVLISYLGSNDP-----------RIRDLAELQLQKW 542 (753)
T ss_dssp THHHHHHTTTTCHHHHHHHHHHTTCCH----------------HHHHGGGCSSCCH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCChH----------------HHHHHHHhcCCCH-----------HHHHHHHHHHHHH
Confidence 256999999999999999988765552 2344433321111 1233334567788
Q ss_pred HHHHHHhhccchhhhccccccHHhHHHHHHHhcCC-------chHHhhhhccHHHHHHHhhheecCCccccchhHHHHHH
Q 005163 308 RAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGN-------TNNLCTLTCHWMELYIAHFLYIRPFTVGLESMYGLAQK 380 (710)
Q Consensus 308 ~~~~~~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd-------~~~i~~~~~~WyE~l~a~lly~~P~~~~~e~l~~~a~~ 380 (710)
++ .+.| +.+.+..|+++|+|+ ...|. ..-+|.++|..++.|..|.... +.+.++.
T Consensus 543 ~~------~~~~--------i~~~~~~iy~llag~~~~~~~~~~~~~-~~l~W~~~l~~~lwy~~~~~~~---~~~~~~~ 604 (753)
T 3jro_A 543 ST------GGCS--------IDKNISKIYKLLSGSPFEGLFSLKELE-SEFSWLCLLNLTLCYGQIDEYS---LESLVQS 604 (753)
T ss_dssp HT------TTCC--------CCHHHHHHHHTSSSCCSSSTTCCGGGG-TTSCHHHHHHHHHHTSCTTTSC---HHHHHHH
T ss_pred HH------cCCC--------CCHHHHHHHHHhCCCccccccchhhcc-CCCCHHHHHHHHHHcCCCCCCC---HHHHHHH
Confidence 63 1233 458899999999994 33444 3678999999999998876543 4445554
Q ss_pred HHHhCCCCcCCchHHHH-HHHHccCHHHHHHHHhhc---cCcchHHHHHHHHHcCCCccchhhhhhccCCCCCchhHHHH
Q 005163 381 CIQLKPMAASHRLMGLL-IGILGENIEVVLAECSKG---FGPWMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHR 456 (710)
Q Consensus 381 ~~~~~~~~~~~~ld~il-~~ile~d~~~vL~~~~~~---ld~W~aaHl~dLL~~~g~l~~~ll~~~~~~~~~~~lre~~L 456 (710)
..+.+++...+.+-.++ +..-..++..+|.-.+.. +|.=|.=|+.-+|.+.|. .++ .....+.+.
T Consensus 605 ~~~~~~~~~~d~~~~ll~l~~~~~~~~~~l~~~~~~~~~ld~~l~w~l~~~l~~~~~----------~~~-~~~~~~~l~ 673 (753)
T 3jro_A 605 HLDKFSLPYDDPIGVIFQLYAANENTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGT----------RVF-SKETSDEAT 673 (753)
T ss_dssp HHTTCCCCTTCHHHHHHHHHHCSTTHHHHHHHHHTTCTTSCHHHHHHHHHHTTTTTC----------SCC-CHHHHHHHH
T ss_pred HHhccCCCccCHHHHHHHHhcCCCCHHHhhccccCCCCCCccccHHHHHHHHHhcCC----------Ccc-ChhhHHHHH
Confidence 44444322222211111 111256788888766443 342344477777877653 011 124578999
Q ss_pred HHHHHHHccCCCcchhhhHHHhhc--hHhhHHHHHHhhcc-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Q 005163 457 LVYAQVLSSHPLTWQIAPIYLTSC--IKQGMGLLEMLLYK-QPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKH 533 (710)
Q Consensus 457 l~YA~~L~s~~~LW~vai~YL~~c--~~~G~~~i~~lL~r-~Pl~te~~~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~ 533 (710)
+.||..|-+. ++|+-|+=.|.+- +..-...|.++|.| ++.-++++- --+..+++.|... |++..+.++..+
T Consensus 674 ~~~a~qL~~~-g~~~~a~fv~~h~~~~~~r~~~i~~~l~r~~~~~~~~~~---~~l~~~l~ip~~w--i~~a~a~~~~~~ 747 (753)
T 3jro_A 674 FAFAAQLEFA-QLHGHSLFVSCFLNDDKAAEDTIKRLVMREITLLRASTN---DHILNRLKIPSQL--IFNAQALKDRYE 747 (753)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHTCSCHHHHHHHHHHHHHHSCTTSSTTTT---TTTTTTTTCCHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchhHHHHhhhCCChHHHHHHHHHHHHhhhhhcCcchh---hhHHhccCCCHHH--HHHHHHHHHHhc
Confidence 9999999866 9999999999984 44456778888865 554332221 1255667777643 444445555555
Q ss_pred CCc
Q 005163 534 GKK 536 (710)
Q Consensus 534 g~~ 536 (710)
|++
T Consensus 748 ~~~ 750 (753)
T 3jro_A 748 GNY 750 (753)
T ss_dssp HHH
T ss_pred CCc
Confidence 543
No 4
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=95.22 E-value=0.15 Score=56.66 Aligned_cols=231 Identities=13% Similarity=0.159 Sum_probs=129.9
Q ss_pred CcchHHHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhhHHHHHHHHHHhC-----CCCCccccccccccccCChh
Q 005163 224 EPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKM-----PRMRPELEAGKLGECFKAKP 298 (710)
Q Consensus 224 ~p~FW~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~m-----P~~~~~~~~g~~g~~~~s~~ 298 (710)
+..||.+|+.+|..|++++|+++-+..+.+= .+ ..|.-+ |.+.+...++ + ...
T Consensus 177 e~~l~~~i~~liR~G~~~eA~~lc~~~gq~W--------------RA--asL~G~~~~~dP~~~~~~~~e-----~-~~~ 234 (460)
T 3iko_C 177 DHIFFKYIYELILAGAIDEALEEAKLSDNIS--------------IC--MILCGIQEYLNPVIDTQIANE-----F-NTQ 234 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH--------------HH--HHHHTTSBCBCTTTSGGGTTT-----C-SSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCHH--------------HH--HHHcccccccCcccccccccc-----c-ccc
Confidence 4589999999999999999999998765431 11 112223 3332211000 0 011
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhccccccHHhHHHHHHHhcCCchHHhh--hhccHHHHHHHhhhe-----------e-
Q 005163 299 DFMKAWEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNNLCT--LTCHWMELYIAHFLY-----------I- 364 (710)
Q Consensus 299 ef~~~w~~W~~~~~~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd~~~i~~--~~~~WyE~l~a~lly-----------~- 364 (710)
+-...+.-||.-|-++..+.. +.+.=+-|+..|+|+-..+.. .| +|-+.+-+++== .
T Consensus 235 ~Gn~~r~LWkr~c~~lA~~~~--------~~~yERAvY~~LsG~l~s~~~~~~~-sWeD~Lway~n~ll~~~vd~~l~~~ 305 (460)
T 3iko_C 235 QGIKKHSLWRRTVYSLSQQAG--------LDPYERAIYSYLSGAIPNQEVLQYS-DWESDLHIHLNQILQTEIENYLLEN 305 (460)
T ss_dssp BSBTTHHHHHHHHHHHHHCSS--------SCHHHHHHHHHHHTSCCCHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCchhHHHHHHHHHHHHhCCC--------CCHHHHHHHHHHhCCchhhcccCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112247889999976643221 235558999999999998875 46 999988775311 0
Q ss_pred cCCc--c-------ccchhHHHHHHHHHhCCCCcCCchHHHHHHHHccCHHHHHHHHhhccCc-----------------
Q 005163 365 RPFT--V-------GLESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGP----------------- 418 (710)
Q Consensus 365 ~P~~--~-------~~e~l~~~a~~~~~~~~~~~~~~ld~il~~ile~d~~~vL~~~~~~ld~----------------- 418 (710)
.|.. + ...++..+++......+....++.-.+..+||-+++..++..+...+..
T Consensus 306 ~~~~~~~~~~~~P~~~~tl~~il~~L~~~~~~ea~~p~r~iQ~~iIl~~~~~ll~~~~~~L~~~~~~~~~~~~~~~~~~~ 385 (460)
T 3iko_C 306 NQVGTDELILPLPSHALTVQEVLNRVASRHPSESEHPIRVLMASVILDSLPSVIHSSVEMLLDVVKGTEASNDIIDKPYL 385 (460)
T ss_dssp TCSCGGGCCSCCCCCCCCHHHHHHHHHHHSHHHHHSTTHHHHHHHHSSCCHHHHHHHHHTCCC----------CTTSHHH
T ss_pred CCccccccccCCCCCccCHHHHHHHHHhcChHhhhChHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCccccccccCcch
Confidence 0110 0 0012344444333222223345667788999999999999877543311
Q ss_pred -chHHHHHHHHHcCCCccchhhhhhccCCCCCchhHHHHHHHHHHHccCCCcchhhhHHHhhch-HhhHHHHHHhhccCC
Q 005163 419 -WMVTHAIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQIAPIYLTSCI-KQGMGLLEMLLYKQP 496 (710)
Q Consensus 419 -W~aaHl~dLL~~~g~l~~~ll~~~~~~~~~~~lre~~Ll~YA~~L~s~~~LW~vai~YL~~c~-~~G~~~i~~lL~r~P 496 (710)
=|+||+.=+|...|. ..+ .....+-.|..|.+.|..+ +..++-.=|.+.-+ +......+.+|..+.
T Consensus 386 LRf~aHl~Lflr~l~~----------~~~-~~~~~~~II~~YI~~L~~~-~~~eLIplY~S~L~~~~~~e~Ys~fL~~i~ 453 (460)
T 3iko_C 386 LRIVTHLAICLDIINP----------GSV-EEVDKSKLITTYISLLKLQ-GLYENIPIYATFLNESDCLEACSFILSSLE 453 (460)
T ss_dssp HHHHHHHHHHHHHHST----------TSS-CHHHHHHHHHHHHHHHHHT-TCGGGHHHHHTTCGGGGGC-----------
T ss_pred HHHHHHHHHHHHHhCc----------ccc-ChHHHHHHHHHHHHHHHHC-CCcccHHHHHccCCHhHHHHHHHHHHhcCC
Confidence 256666655544431 001 1234678888999999865 55577777877644 456777788887764
Q ss_pred C
Q 005163 497 V 497 (710)
Q Consensus 497 l 497 (710)
=
T Consensus 454 d 454 (460)
T 3iko_C 454 D 454 (460)
T ss_dssp -
T ss_pred C
Confidence 3
No 5
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=94.77 E-value=0.33 Score=52.92 Aligned_cols=142 Identities=13% Similarity=0.114 Sum_probs=89.6
Q ss_pred HhHHHHHHHhcCCchHHhhh--hccHHHHHHHhhheecCCccccchh-HHHHHHHHHhCCCCcCCchHHHHHHHHccCHH
Q 005163 330 EGLRNMLQIMLGNTNNLCTL--TCHWMELYIAHFLYIRPFTVGLESM-YGLAQKCIQLKPMAASHRLMGLLIGILGENIE 406 (710)
Q Consensus 330 ~~L~~ll~IL~Gd~~~i~~~--~~~WyE~l~a~lly~~P~~~~~e~l-~~~a~~~~~~~~~~~~~~ld~il~~ile~d~~ 406 (710)
+.++.|..|+.||-..+... -.+|.|.+++.+-|..|....+..+ ..+.++-.+.. ...+..+..|+.|++.
T Consensus 204 ~~~rll~~iv~~n~~d~V~~~~l~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g-----~~~~A~lCYi~Ag~~d 278 (399)
T 2pm7_A 204 SLSRILYSISKREVDDLVENLDVSQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENG-----HRQDSLTLYLAAGSLD 278 (399)
T ss_dssp HHHHHHHHHHTTCCHHHHHHBCGGGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHccCHHHHHhcCChhhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCC-----ChhhhhHHHHhhCCHH
Confidence 67899999999999998764 4799999999999997651111112 34444433321 3357788999999999
Q ss_pred HHHHHHhhccC-----------cchHHH---HHHHHHcCCCccchhhhhhccCCCCCchhHHHHHHHHHHHccCCCcchh
Q 005163 407 VVLAECSKGFG-----------PWMVTH---AIEVLTAGSHQADTLLHEERDNLGGISMEELHRLVYAQVLSSHPLTWQI 472 (710)
Q Consensus 407 ~vL~~~~~~ld-----------~W~aaH---l~dLL~~~g~l~~~ll~~~~~~~~~~~lre~~Ll~YA~~L~s~~~LW~v 472 (710)
++...-...+. .=+.+| |.|++++.-++... ++ .........+-+ ++++||..|+++ +.-..
T Consensus 279 k~v~iW~~~~~~~~~~~~~~~~s~~~~~~~~Lqe~iEkv~vl~~a-~~-~~~~~~~~~l~~-~~~eYA~lLA~q-G~l~~ 354 (399)
T 2pm7_A 279 KVASIWLSEFPDLEDKLKKDNKTIYEAHSECMTEFIERFTVFSNF-IN-GSSTINNEQLIA-KFLEFINLTTST-GNFEL 354 (399)
T ss_dssp HHHHHHHHSHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT-SC-C---CCCHHHHH-HHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHhcchhhhccccccCCcccccHHHHHHHHHHHHHHHHH-Hh-cCCCcCcHHHHH-HHHHHHHHHHhC-CCHHH
Confidence 98875422221 223344 56777764221111 10 000111223443 589999999965 88899
Q ss_pred hhHHHhhc
Q 005163 473 APIYLTSC 480 (710)
Q Consensus 473 ai~YL~~c 480 (710)
|..||..-
T Consensus 355 A~~yL~~l 362 (399)
T 2pm7_A 355 ATEFLNSL 362 (399)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99999863
No 6
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=91.38 E-value=19 Score=41.63 Aligned_cols=397 Identities=8% Similarity=-0.014 Sum_probs=191.9
Q ss_pred CcchHHHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhhHHHHHHHHHHhCCCCCccccccccccccCChhHHHHH
Q 005163 224 EPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKA 303 (710)
Q Consensus 224 ~p~FW~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~ef~~~ 303 (710)
...-|..|+=|+=.|..++|.+.++.++.... . .+ ..+...++..=.. + ++. -.++...+
T Consensus 152 g~p~Wa~IyY~LR~G~~~~A~e~~~~~~~~~~-~-----~d----~~F~~~l~~~~~s-~---~~~------L~~~~~~~ 211 (661)
T 2qx5_A 152 GVPIWALIFYLLRAGLIKEALQVLVENKANIK-K-----VE----QSFLTYFKAYASS-K---DHG------LPVEYSTK 211 (661)
T ss_dssp TEEHHHHHHHHHTTTCHHHHHHHHHHTGGGC---------------CHHHHHHHC-------------------------
T ss_pred CcccHHHHHHHHhcCCHHHHHHHHHHhhhhHh-h-----hh----HHHHHHHHHHHhC-C---CCC------CCHHHHHH
Confidence 34599999999999999999999997754321 0 01 1222222222110 0 000 11111111
Q ss_pred -HHHHHHHHHHhhccchhhhccccccHHhHHHHHHHhcCCchH------HhhhhccHH--HHHHHhhheecCCc----cc
Q 005163 304 -WEKWRAQIAKLECSTFWIQCAHRQTQEGLRNMLQIMLGNTNN------LCTLTCHWM--ELYIAHFLYIRPFT----VG 370 (710)
Q Consensus 304 -w~~W~~~~~~L~~~~f~~~~~~~~~~~~L~~ll~IL~Gd~~~------i~~~~~~Wy--E~l~a~lly~~P~~----~~ 370 (710)
..+|+..++.-. .+++.=.-+++||.|-+-. |....+||. .+.... -.+... ..
T Consensus 212 l~~ey~~~~r~~~-----------~~DpyK~AvY~Iig~cD~~~~~~~~v~~siED~LWl~L~lvr--e~~~~~~~~~e~ 278 (661)
T 2qx5_A 212 LHTEYNQHIKSSL-----------DGDPYRLAVYKLIGRCDLSRKNIPAVTLSIEDWLWMHLMLIK--EKDAENDPVYER 278 (661)
T ss_dssp --------------------------CHHHHHHHHHHHTCCGGGCCCGGGCCSHHHHHHHHHHTCC--C----------C
T ss_pred HHHHHHHHHhCCC-----------CCCHHHHHHHHHHhcccccccchHHHhccHHHHHHHHHHhcc--CCCccccccccc
Confidence 223433332100 0235556788888776432 334456654 443221 111111 11
Q ss_pred cchhHHHHHHHHHhCCCCcCCchHHHHHHHHccCHHHHHHHHhhccCcchHHHHHHHHHcCCCccc--hhhhhhccCCCC
Q 005163 371 LESMYGLAQKCIQLKPMAASHRLMGLLIGILGENIEVVLAECSKGFGPWMVTHAIEVLTAGSHQAD--TLLHEERDNLGG 448 (710)
Q Consensus 371 ~e~l~~~a~~~~~~~~~~~~~~ld~il~~ile~d~~~vL~~~~~~ld~W~aaHl~dLL~~~g~l~~--~ll~~~~~~~~~ 448 (710)
+ .+..+ |+.+..+++.--+.+ =..+=++.|-.+.+|.-+... ..-=|.|+|=.|+..|++.. .++..+ .+.
T Consensus 279 y-tL~~L-Q~~I~~yGe~~F~~l-Yf~vLlLtgqFE~AI~~L~~~-~~vdAVH~AIaL~~~gLL~~~~~lls~~---~~~ 351 (661)
T 2qx5_A 279 Y-SLEDF-QNIIISYGPSRFSNY-YLQTLLLSGLYGLAIDYTYTF-SEMDAVHLAIGLASLKLFKIDSSTRLTK---KPK 351 (661)
T ss_dssp C-CHHHH-HHHHHHHCGGGGTTC-HHHHHHHTTCHHHHHHHHHTT-CHHHHHHHHHHHHHTTC-----------------
T ss_pred c-cHHHH-HHHHHHhhhhhhhhH-HHHHHHHHhhHHHHHHHHHhc-CchhHHHHHHHHHHcCCccCCCcccccC---CCc
Confidence 1 14443 333335554322221 122345689999999988544 66788899988888887442 111000 000
Q ss_pred Cch-hHHHHHHHHHHHccCCCcchhhhHHHhh-chH---hhHHHHHHhhccCCCCCHHHHHHHH-----------HHHHh
Q 005163 449 ISM-EELHRLVYAQVLSSHPLTWQIAPIYLTS-CIK---QGMGLLEMLLYKQPVDHNQLLLKNL-----------EICRL 512 (710)
Q Consensus 449 ~~l-re~~Ll~YA~~L~s~~~LW~vai~YL~~-c~~---~G~~~i~~lL~r~Pl~te~~~~k~l-----------~iC~~ 512 (710)
..+ ==.++..|.... ..+==+.|++|+.. |-. .|.....+.+..+-++| ++..+++ -+..+
T Consensus 352 ~~lN~arLI~~Yt~~F--~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvlet-r~f~~LLG~i~~dG~r~~G~i~~ 428 (661)
T 2qx5_A 352 RDIRFANILANYTKSF--RYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLET-KEFTVLLGKIGRDGARIPGVIEE 428 (661)
T ss_dssp ---CHHHHHHHHHTTT--TTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHH-CCHHHHHCEECTTSCEECCHHHH
T ss_pred ccccHHHHHHHHHHHh--hcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhc-ccHHHHcCCcCCCCCcCcchHHH
Confidence 010 112344444333 34456789999885 543 34333333333322222 1222222 11112
Q ss_pred ----cCC---chHHHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHHHHHHHHHHhccCC--cchh-------hhh-
Q 005163 513 ----YEL---DSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSIS--DENF-------RQW- 575 (710)
Q Consensus 513 ----~~L---~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~iad~ll~~y~~~~s--~~~~-------~~~- 575 (710)
.+| .+..+.|+...|.++-.+|++..|+.-+-.|+|++.|=.+.+..|.+.+...+ .+.+ .++
T Consensus 429 ~~~li~l~d~~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~ 508 (661)
T 2qx5_A 429 RQPLLHVRDEKEFLHTITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPV 508 (661)
T ss_dssp TCGGGTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHH
T ss_pred hhcccccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHH
Confidence 123 24688899999999999999999999999999999999999999887764321 1110 011
Q ss_pred ---HHHHHhcCCCcc----cc----CcchhhHhHHHHHHHHHhhhcCCchHHHHHHHHHHHHhhcCCCCchhcHHH---H
Q 005163 576 ---EGLIQLLGSEPK----TA----GGLEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLP---L 641 (710)
Q Consensus 576 ---~dll~~l~~~~~----~s----~~L~FL~kY~eF~~~~~~~~~g~~~~~~r~Aa~~Lv~Ll~s~~~Pk~fw~~---L 641 (710)
..+++....... .+ ..+.-|-+..+|+.+|.. |++.. |.+.+- +-++.|-. =.. -
T Consensus 509 ~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~---g~~~~----AL~~i~---~L~llPl~-d~~~i~~ 577 (661)
T 2qx5_A 509 LLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFN---KQWQE----TLSQME---LLDLLPFS-DELSARK 577 (661)
T ss_dssp HHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHT---TCHHH----HHHHHH---HTSCSCC------CHH
T ss_pred HHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHc---CCHHH----HHHHHH---hCCCCCCC-CchHHHH
Confidence 123333222211 11 123447777788888765 77653 444433 34577755 111 1
Q ss_pred HHHHHhhccCCCCCcccHHHHHHHHHHHHHHHhh
Q 005163 642 LHDSLKLLNWEERPLLNVLQTNLLLNKLQELSIA 675 (710)
Q Consensus 642 L~dalpLLe~~~~~~fs~~qt~~LL~~LEel~~~ 675 (710)
-.+...-|..+=...+ .+=...-|.||-+....
T Consensus 578 ~a~~f~~l~~~V~~~l-P~lLl~aM~~l~~~~~~ 610 (661)
T 2qx5_A 578 KAQDFSNLDDNIVKNI-PNLLIITLSCISNMIHI 610 (661)
T ss_dssp HHHHGGGSCHHHHTTH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 1222233321110122 23356677777766443
No 7
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=60.89 E-value=1.8e+02 Score=31.18 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=37.0
Q ss_pred ch--HHHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHHH
Q 005163 516 DS--VSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIA 556 (710)
Q Consensus 516 ~~--va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~ia 556 (710)
++ .-..+|..+|.|+..+|+.-.|..+|+=||+.+.+-.+=
T Consensus 242 ~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW 284 (399)
T 2pm7_A 242 NDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIW 284 (399)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHH
Confidence 56 788999999999999999999999999999998877654
No 8
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=49.74 E-value=87 Score=32.52 Aligned_cols=84 Identities=5% Similarity=-0.037 Sum_probs=60.4
Q ss_pred chHhhHHHHHHhhccCCCCCH---HHHHHHHHHHHhcCCchH-HHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHH
Q 005163 480 CIKQGMGLLEMLLYKQPVDHN---QLLLKNLEICRLYELDSV-SSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRI 555 (710)
Q Consensus 480 c~~~G~~~i~~lL~r~Pl~te---~~~~k~l~iC~~~~L~~v-a~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~i 555 (710)
|.+..+.+|-+++..+|-.+. +-+.+++..+.+.|=... --.+.+++|...+++|++.+|-.+++.+. .+.....
T Consensus 90 ~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~ 168 (312)
T 2wpv_A 90 VDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKY 168 (312)
T ss_dssp CSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHH
Confidence 356678899999999987654 235667888776633211 23689999999999999999999999665 3344566
Q ss_pred HHHHHHHHh
Q 005163 556 AQQMFDSVG 564 (710)
Q Consensus 556 ad~ll~~y~ 564 (710)
++.+.+-+.
T Consensus 169 a~~l~~w~~ 177 (312)
T 2wpv_A 169 VDLLWDWLC 177 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 667765443
No 9
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=41.41 E-value=1.6e+02 Score=30.88 Aligned_cols=85 Identities=9% Similarity=0.031 Sum_probs=60.3
Q ss_pred chHhhHHHHHHhhccCCCCCHHH---HHHHHHHHHhcCCchH-HHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHH
Q 005163 480 CIKQGMGLLEMLLYKQPVDHNQL---LLKNLEICRLYELDSV-SSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRI 555 (710)
Q Consensus 480 c~~~G~~~i~~lL~r~Pl~te~~---~~k~l~iC~~~~L~~v-a~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~i 555 (710)
|.+..+.+|-+++..+|-.+..+ +.+++..+.+.|=... --.+...+|...+++++|.+|-.+++.+.|. .+..+
T Consensus 92 ~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~-s~~~~ 170 (336)
T 3lpz_A 92 VDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKE-SPEVL 170 (336)
T ss_dssp CCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTT-HHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCc-hHHHH
Confidence 44567889999999999765432 4456677766542111 2358889999999999999999999986653 34667
Q ss_pred HHHHHHHHhc
Q 005163 556 AQQMFDSVGR 565 (710)
Q Consensus 556 ad~ll~~y~~ 565 (710)
++.+.+=+..
T Consensus 171 a~mL~ew~~~ 180 (336)
T 3lpz_A 171 ARMEYEWYKQ 180 (336)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 7777654443
No 10
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=39.44 E-value=87 Score=35.56 Aligned_cols=37 Identities=11% Similarity=-0.053 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHHH
Q 005163 520 SNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIA 556 (710)
Q Consensus 520 ~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~ia 556 (710)
+...+.+|+.+++.|++-.|...|.+++|+..+..+.
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~ 717 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLH 717 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHH
Confidence 4566889999999999999999999999999988765
No 11
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=38.00 E-value=32 Score=32.82 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHH
Q 005163 503 LLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRI 555 (710)
Q Consensus 503 ~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~i 555 (710)
.+..+++|++.+ .....+.+|..++++|++..|-.+|.+++|+..+.-+
T Consensus 21 l~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~L 69 (177)
T 3mkq_B 21 LDAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFL 69 (177)
T ss_dssp HHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHH
Confidence 444555666542 2456788999999999999999999999999998653
No 12
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=32.25 E-value=1.5e+02 Score=32.38 Aligned_cols=106 Identities=17% Similarity=0.260 Sum_probs=62.9
Q ss_pred CcchHHHHHHHHhcCcHHHHHHHHHhccCCccccccCccchhhHHHHHHHHHHhCCCCCccccccccccccCChhHHHHH
Q 005163 224 EPKYWEVMSSALAVGWLDIVVKLLRLHGSYQLDQLGNRETENGLVEAVAVLISKMPRMRPELEAGKLGECFKAKPDFMKA 303 (710)
Q Consensus 224 ~p~FW~~v~~lvlrG~~~~A~~lL~~hs~~~~d~l~~~~~~~~l~~~~~~LL~~mP~~~~~~~~g~~g~~~~s~~ef~~~ 303 (710)
++..=+.|.++++.|+.++|+++=-.+..|.. ++ +|.++ ..+
T Consensus 150 d~~~~~~I~~~Ll~G~~e~Av~~al~~~lwa~--------------AL--lLAs~-----------------~g~----- 191 (441)
T 3mzk_B 150 DINCQMRVLAFLQTGNHDEALRLALSKRDYAI--------------AL--LVGSL-----------------MGK----- 191 (441)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHH--------------HH--HHHHT-----------------SCH-----
T ss_pred ChHHHHHHHHHHHcCCHHHHHHHHHhCCcHHH--------------HH--HHHHh-----------------cCH-----
Confidence 45566679999999999999987665555521 11 11111 111
Q ss_pred HHHHHHHHHHhhccchhh-hccccccHHhHHHHHHHhcCCchHHhh-----------hhccHHHHHHHhhheecCCc
Q 005163 304 WEKWRAQIAKLECSTFWI-QCAHRQTQEGLRNMLQIMLGNTNNLCT-----------LTCHWMELYIAHFLYIRPFT 368 (710)
Q Consensus 304 w~~W~~~~~~L~~~~f~~-~~~~~~~~~~L~~ll~IL~Gd~~~i~~-----------~~~~WyE~l~a~lly~~P~~ 368 (710)
+.|++-+++.-...+-. ..++.....-|+.|++++.|+...+.. ...+|.|.+.+.+-+..+..
T Consensus 192 -e~~~~V~~~y~~~~~~~~~~~~~~~~~~Lr~Ly~v~sGn~~~~V~~l~~~~~~~~~~l~~Wre~lA~IlsN~~~~~ 267 (441)
T 3mzk_B 192 -DRWSEVIQKYLYEGFTAGPNDQKELAHFLLLIFQVFVGNSKMAIKSFYTNNETSQWASENWKSIVAAVLINIPENN 267 (441)
T ss_dssp -HHHHHHHHHHHHCC------CTHHHHHHHHHHHHHTTTCHHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHTSCCCS
T ss_pred -HHHHHHHHHHHHhhcccCCccccccccHHHHHHHHHcCCHHHHHHHhccCCccccchHhHHHHHHHHHHhCCCCch
Confidence 23544443222222211 001112345689999999999988654 24589999999998876643
No 13
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=31.79 E-value=46 Score=28.15 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=32.9
Q ss_pred HHHHHhcCCchHHHHHHHHcC---ChHHHHHHHHHHHHHHhc
Q 005163 527 GMYNWKHGKKGSGVYWLQQAR---DEARLNRIAQQMFDSVGR 565 (710)
Q Consensus 527 g~~~~~~g~~g~AL~w~~rA~---D~~~v~~iad~ll~~y~~ 565 (710)
|..+.+.++||+|+..+-++. +-..++.|++..+++|-.
T Consensus 60 ak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 60 GKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHH
Confidence 677888999999999998876 667899999988887643
No 14
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=22.96 E-value=1.3e+02 Score=26.88 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHcCC
Q 005163 502 LLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARD 548 (710)
Q Consensus 502 ~~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D 548 (710)
...+.++++.+.+.....-.++..+|.-....|++..|+.++.++-+
T Consensus 48 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 94 (203)
T 3gw4_A 48 SFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56668888888888887778888899999999999999988887643
No 15
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=21.72 E-value=57 Score=27.18 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHc
Q 005163 521 NIMKIAGMYNWKHGKKGSGVYWLQQA 546 (710)
Q Consensus 521 ~I~k~~g~~~~~~g~~g~AL~w~~rA 546 (710)
.-|-.+|..+...|+|..|+.|+..|
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~A 31 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQA 31 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHH
Confidence 45777999999999999999999877
No 16
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=20.53 E-value=1.7e+02 Score=24.40 Aligned_cols=44 Identities=14% Similarity=0.049 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHc
Q 005163 503 LLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQA 546 (710)
Q Consensus 503 ~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA 546 (710)
..+.++++.+.+-......++..+|.-....|++.+|+.++.++
T Consensus 112 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 112 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45566677776666666667777888888888888888887665
No 17
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=20.51 E-value=1.7e+02 Score=24.28 Aligned_cols=44 Identities=11% Similarity=-0.019 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHc
Q 005163 503 LLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQA 546 (710)
Q Consensus 503 ~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA 546 (710)
.++.++++.+.+-+.....++..+|.-....|++.+|+.++.++
T Consensus 72 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 72 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44455566555555555556666777777777777777776554
No 18
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=20.24 E-value=2.7e+02 Score=27.52 Aligned_cols=129 Identities=10% Similarity=0.023 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHHHHHHHHHHhccCCcchhhhhH-H-H
Q 005163 501 QLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFDSVGRSISDENFRQWE-G-L 578 (710)
Q Consensus 501 ~~~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~iad~ll~~y~~~~s~~~~~~~~-d-l 578 (710)
+.+..++..+..++++...+..++.+.. .+...+...-+.++.+-+.....+...+.+.+++..-...+.|.++. + +
T Consensus 110 ~~v~~ll~~A~~l~i~~L~~~c~~~L~~-~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l 188 (279)
T 3i3n_A 110 GSVHEVLELADRFLLIRLKEFCGEFLKK-KLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLI 188 (279)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSCHHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHH-cCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCCHHHH
Confidence 4588899999999999887776666654 45555555555555555554444444444544443221135554442 2 3
Q ss_pred HHhcCCCcc-ccCc---chhhHhHHHHHHHHHhhhcCCchHHHHHHHHHHHHhhcCCCCchhcHHHH
Q 005163 579 IQLLGSEPK-TAGG---LEFLHNYRDFKKSLLQIRDGKTTDAARQAVESLISLMKNPCTPQRFWLPL 641 (710)
Q Consensus 579 l~~l~~~~~-~s~~---L~FL~kY~eF~~~~~~~~~g~~~~~~r~Aa~~Lv~Ll~s~~~Pk~fw~~L 641 (710)
..-+.++-. .... +...-++-+.. .. .+++.+..|+..++++.+|..|...+
T Consensus 189 ~~lL~~d~L~v~sE~~vf~av~~W~~~~----------~~-~r~~~~~~ll~~VRf~l~~~~~L~~~ 244 (279)
T 3i3n_A 189 RDWLSDLEITVDSEEVLFETVLKWVQRN----------AE-ERERYFEELFKLLRLSQMKPTYLTRH 244 (279)
T ss_dssp HHHHTCSSCCCSCHHHHHHHHHHHHHTT----------HH-HHTTTHHHHHTTSCGGGSCHHHHHHT
T ss_pred HHHhcCcCCCCCCHHHHHHHHHHHHHcC----------HH-HHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 333333221 1212 22223322211 11 22344678899999999998876554
Done!