Query 005163
Match_columns 710
No_of_seqs 153 out of 179
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 17:19:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005163.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005163hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tjca_ a.118.8.1 (A:) Prolyl 26.3 19 0.0014 27.7 3.0 25 522-546 7-31 (95)
2 d1b89a_ a.118.1.3 (A:) Clathri 22.2 64 0.0047 31.2 6.7 63 499-561 13-81 (336)
3 d1b25a1 a.110.1.1 (A:211-619) 15.0 66 0.0048 32.1 4.9 68 488-559 100-167 (409)
4 d1h2vc1 a.118.1.14 (C:29-290) 14.9 2.8E+02 0.02 25.2 9.3 35 617-651 96-130 (262)
5 d1nzna_ a.118.8.1 (A:) Mitocho 13.0 1.4E+02 0.01 23.6 5.7 29 518-546 70-98 (122)
6 d1klxa_ a.118.18.1 (A:) Cystei 11.5 3.2E+02 0.024 21.2 8.1 61 499-559 38-101 (133)
7 d1hz4a_ a.118.8.2 (A:) Transcr 11.3 1.5E+02 0.011 26.1 6.0 45 502-546 273-317 (366)
8 d1xsza1 a.118.3.1 (A:1-197) Ra 11.3 1.3E+02 0.0096 26.6 5.3 70 465-534 49-122 (197)
9 d1t3qa1 a.56.1.1 (A:88-168) Qu 11.0 59 0.0043 25.0 2.3 57 479-535 22-80 (81)
10 d1h2vc2 a.118.1.14 (C:291-480) 10.8 65 0.0047 28.8 2.8 99 328-427 24-134 (190)
No 1
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.34 E-value=19 Score=27.74 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHc
Q 005163 522 IMKIAGMYNWKHGKKGSGVYWLQQA 546 (710)
Q Consensus 522 I~k~~g~~~~~~g~~g~AL~w~~rA 546 (710)
-|-.+|..+.+.|+|..|+.|+.+|
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~A 31 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQA 31 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4667899999999999999999776
No 2
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.19 E-value=64 Score=31.25 Aligned_cols=63 Identities=10% Similarity=0.025 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHH------HHHHHHhcCCchHHHHHHHHcCChHHHHHHHHHHHH
Q 005163 499 HNQLLLKNLEICRLYELDSVSSNIMKI------AGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQMFD 561 (710)
Q Consensus 499 te~~~~k~l~iC~~~~L~~va~~I~k~------~g~~~~~~g~~g~AL~w~~rA~D~~~v~~iad~ll~ 561 (710)
...++..+...|.+.||.+.|..++.. +....++.+.+-.|+..+.++++...++.++..+++
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455778899999999999999999985 444567888999999999999999999988877664
No 3
>d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin oxidoreductase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=15.03 E-value=66 Score=32.13 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=47.4
Q ss_pred HHHhhccCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHcCChHHHHHHHHHH
Q 005163 488 LEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQARDEARLNRIAQQM 559 (710)
Q Consensus 488 i~~lL~r~Pl~te~~~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA~D~~~v~~iad~l 559 (710)
+..+=..+=+.+-+.+.++..+|.++||+.+..-..--+.+.+..+|-+...+.| ||...+.++..+|
T Consensus 100 ~~~~Gs~~gi~D~~~v~~~n~lcd~~GlDtIs~G~~ia~amE~~e~Gll~~~~~~----Gd~e~~~~ll~~I 167 (409)
T d1b25a1 100 VALLGSNLGIGKLNEVSVLNRIADEMGMDTISLGVSIAHVMEAVERGILKEGPTF----GDFKGAKQLALDI 167 (409)
T ss_dssp HHHHTGGGTCCCHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHTTSSSSSCCT----TCHHHHHHHHHHH
T ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHCCCCCccccC----CChHHHHHHHHHH
Confidence 3333334456778899999999999999988776666688888888755544433 5666655554443
No 4
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.88 E-value=2.8e+02 Score=25.24 Aligned_cols=35 Identities=11% Similarity=0.050 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhcCCCCchhcHHHHHHHHHhhccC
Q 005163 617 ARQAVESLISLMKNPCTPQRFWLPLLHDSLKLLNW 651 (710)
Q Consensus 617 ~r~Aa~~Lv~Ll~s~~~Pk~fw~~LL~dalpLLe~ 651 (710)
.+-.+..|..|...++.+..-...+|..++-..+.
T Consensus 96 ~~~llrFla~L~n~~Vv~~~~i~~ll~~ll~~~~e 130 (262)
T d1h2vc1 96 AVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQE 130 (262)
T ss_dssp HHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHccCCCCcHhHHHHHHHHHHHHHhh
Confidence 34455555555556666555555555555544433
No 5
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.03 E-value=1.4e+02 Score=23.65 Aligned_cols=29 Identities=3% Similarity=0.065 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHc
Q 005163 518 VSSNIMKIAGMYNWKHGKKGSGVYWLQQA 546 (710)
Q Consensus 518 va~~I~k~~g~~~~~~g~~g~AL~w~~rA 546 (710)
....++..+|.-..+.|+|..|+.++-++
T Consensus 70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~a 98 (122)
T d1nzna_ 70 EQRDYVFYLAVGNYRLKEYEKALKYVRGL 98 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33456677898899999999999998876
No 6
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}
Probab=11.48 E-value=3.2e+02 Score=21.15 Aligned_cols=61 Identities=8% Similarity=-0.002 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHc---CChHHHHHHHHHH
Q 005163 499 HNQLLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQA---RDEARLNRIAQQM 559 (710)
Q Consensus 499 te~~~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA---~D~~~v~~iad~l 559 (710)
+.+++.+.++.+.+.|-+...-.+..++-.-..-..++..|+.|+.+| ++....-.++...
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~Lg~~y 101 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQ 101 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCcchHHHHHHHHH
Confidence 455667767777777765443333332211111234678888888887 5555555555443
No 7
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
Probab=11.31 E-value=1.5e+02 Score=26.06 Aligned_cols=45 Identities=22% Similarity=0.209 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHc
Q 005163 502 LLLKNLEICRLYELDSVSSNIMKIAGMYNWKHGKKGSGVYWLQQA 546 (710)
Q Consensus 502 ~~~k~l~iC~~~~L~~va~~I~k~~g~~~~~~g~~g~AL~w~~rA 546 (710)
..++++.++...++......+...+|.-....|++.+|+.++.+|
T Consensus 273 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 273 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 346677888888888888888888999999999999999988775
No 8
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=11.28 E-value=1.3e+02 Score=26.63 Aligned_cols=70 Identities=10% Similarity=0.057 Sum_probs=48.6
Q ss_pred cCCCcchhhh-HHHhhchHhhHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHH---HHHHHhcC
Q 005163 465 SHPLTWQIAP-IYLTSCIKQGMGLLEMLLYKQPVDHNQLLLKNLEICRLYELDSVSSNIMKIA---GMYNWKHG 534 (710)
Q Consensus 465 s~~~LW~vai-~YL~~c~~~G~~~i~~lL~r~Pl~te~~~~k~l~iC~~~~L~~va~~I~k~~---g~~~~~~g 534 (710)
..++|=+.++ +||+...+.....+.+++..+.+....-.+-+-.+|....|+.+++.|=|++ +.+..+.+
T Consensus 49 ~~~~L~k~~iGeyLg~~~~~n~~vl~~y~~~f~f~~~~id~ALR~~l~~f~LpgE~Q~IdRile~Fa~~y~~~N 122 (197)
T d1xsza1 49 QRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQN 122 (197)
T ss_dssp TTTTSCHHHHHHHHTCCSHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHcCCchHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHhC
Confidence 4456666666 5665545677899999999988875544444666789999999888866554 55555443
No 9
>d1t3qa1 a.56.1.1 (A:88-168) Quinoline 2-oxidoreductase small subunit QorS, C-domain {Pseudomonas putida [TaxId: 303]}
Probab=11.03 E-value=59 Score=24.97 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=45.7
Q ss_pred hchHhhHHHHHHhhccCCCCCHHHHHHHH--HHHHhcCCchHHHHHHHHHHHHHHhcCC
Q 005163 479 SCIKQGMGLLEMLLYKQPVDHNQLLLKNL--EICRLYELDSVSSNIMKIAGMYNWKHGK 535 (710)
Q Consensus 479 ~c~~~G~~~i~~lL~r~Pl~te~~~~k~l--~iC~~~~L~~va~~I~k~~g~~~~~~g~ 535 (710)
+|...-...+..||.+-|-.|++++...| .+|+=-|-..+.+.|.+....+..++|.
T Consensus 22 fCtPG~vm~~~~ll~~~~~ps~~ei~~al~GnlCRCtgY~~I~~Av~~~a~~~~~~~ge 80 (81)
T d1t3qa1 22 FCTAGMLATARSILAENPAPSRDEVREVMSGNLCRCTGYETIIDAITDPAVAEAARRGE 80 (81)
T ss_dssp SSHHHHHHHHHHHHHHCSSCCHHHHHHHGGGSCCSSSCSHHHHHHHTCHHHHHHHHTTC
T ss_pred CCchHHHHHHHHHHhcCCCCCHHHHHHHHcCCcCcCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 35555566788899999999999999988 5899999999988888877666666654
No 10
>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.78 E-value=65 Score=28.78 Aligned_cols=99 Identities=12% Similarity=0.193 Sum_probs=50.4
Q ss_pred cHHhHHHHHHHhcCCchHHhh------hhccH-HHHHHHhhhee----cCCccccch-hHHHHHHHHHhCCCCcCCchHH
Q 005163 328 TQEGLRNMLQIMLGNTNNLCT------LTCHW-MELYIAHFLYI----RPFTVGLES-MYGLAQKCIQLKPMAASHRLMG 395 (710)
Q Consensus 328 ~~~~L~~ll~IL~Gd~~~i~~------~~~~W-yE~l~a~lly~----~P~~~~~e~-l~~~a~~~~~~~~~~~~~~ld~ 395 (710)
.+++|.+++..+.+|.+.-.+ .-.+| .|.++.-.++. -|+.....- .+.+..++.+..|..-...+-+
T Consensus 24 iee~i~dii~~~~~nRkecA~~Ll~~p~~~~~~~e~~ivE~ifs~m~~LP~~~~~~iyY~sll~elCK~~P~~ip~v~~~ 103 (190)
T d1h2vc2 24 IEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQ 103 (190)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHhCCCcccCchHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 468899999999999887432 24566 66666655543 354433221 2455666666655332222222
Q ss_pred HHHHHHccCHHHHHHHHhhccCcchHHHHHHH
Q 005163 396 LLIGILGENIEVVLAECSKGFGPWMVTHAIEV 427 (710)
Q Consensus 396 il~~ile~d~~~vL~~~~~~ld~W~aaHl~dL 427 (710)
.+..+++. +...=-+|..-+-.||+-|+++.
T Consensus 104 ai~~ly~~-l~~md~e~~~Rf~dWfShHLSNF 134 (190)
T d1h2vc2 104 ATEMLYMR-LDTMNTTCVDRFINWFSHHLSNF 134 (190)
T ss_dssp HHHHHHHT-GGGBCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHh-cccCCHHHHHHHHHHHHHHhhcc
Confidence 22222221 11111223333446777777644
Done!