Query 005164
Match_columns 710
No_of_seqs 198 out of 364
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 17:20:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yud_A YTH domain-containing p 100.0 2.5E-54 8.4E-59 419.4 8.8 166 436-616 8-179 (180)
2 2yu6_A YTH domain-containing p 100.0 2.3E-52 7.8E-57 391.9 10.8 138 452-596 4-141 (141)
3 2hd9_A UPF0310 protein PH1033; 96.2 0.01 3.5E-07 55.7 7.4 125 457-593 2-144 (145)
4 2p5d_A UPF0310 protein mjecl36 95.0 0.046 1.6E-06 51.4 7.0 124 456-592 4-147 (147)
5 2eve_A Hypothetical protein ps 52.5 25 0.00087 33.9 6.4 131 457-596 2-152 (157)
6 3eop_A Thymocyte nuclear prote 26.9 1.1E+02 0.0038 30.1 6.4 131 457-594 2-168 (176)
7 2ar1_A Hypothetical protein; s 23.8 1.1E+02 0.0038 29.9 5.7 75 455-536 18-102 (172)
8 2jvf_A De novo protein M7; tet 12.0 35 0.0012 29.6 -0.8 15 571-585 9-23 (96)
9 3goe_A DNA repair protein RAD6 10.5 2.7E+02 0.0093 24.4 4.2 45 458-508 11-55 (82)
10 3ia2_A Arylesterase; alpha-bet 8.4 1E+02 0.0035 28.3 0.8 27 103-129 3-29 (271)
No 1
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=2.5e-54 Score=419.44 Aligned_cols=166 Identities=31% Similarity=0.531 Sum_probs=156.3
Q ss_pred cCCCCcccCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCCCC
Q 005164 436 SLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQ 515 (710)
Q Consensus 436 ~~~~~~~qyN~~df~~~y~~ARFFIIKS~nEdNIhkSIKyGVWaTTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SGq 515 (710)
...+++++||+.++.. +++|||||||++++|||+||+||||+||++||++|++||+++ .+||||||||+||+
T Consensus 8 ~~~~~~~~~~~~~~~~--~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~------~~V~L~FSVn~Sg~ 79 (180)
T 2yud_A 8 VRAVRKDQTSKLKYVL--QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSA------RSVILIFSVRESGK 79 (180)
T ss_dssp CCCCCCCSSHHHHHHT--TTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHS------SCEEEEEEETTTSE
T ss_pred hhhcchhhcccccccc--CceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhC------CeEEEEEEeCCCCc
Confidence 4466789999988774 899999999999999999999999999999999999999997 48999999999999
Q ss_pred eeEEEEecCCCCCCCCchhhc------cccccCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHH
Q 005164 516 FVGLAEMAGPVDFNKNVEYWQ------QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKL 589 (710)
Q Consensus 516 FqG~AeM~SpVDf~ks~~~Wq------qdKw~G~F~VkWi~vkDVPf~~lrHI~N~~NeNKPVt~SRDgQEIe~e~G~qL 589 (710)
|||||||+++++++....+|+ +++|+|.|+|+||+++||||..++||+|+|||||||+++||||||++++|++|
T Consensus 80 F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~~G~~L 159 (180)
T 2yud_A 80 FQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL 159 (180)
T ss_dssp EEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHHHHHHH
T ss_pred EEEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHHHHHHH
Confidence 999999999999988888996 46799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcccccchhhhHHHHHHH
Q 005164 590 IKIFKDHPSKTCILDDFGFYETRQKTI 616 (710)
Q Consensus 590 LkIF~~~~~~tSILDDF~~Ye~rek~~ 616 (710)
|+||+.+ ++|++|+.|+|+.
T Consensus 160 ~~lf~~~-------~~~~~~~~~~~~~ 179 (180)
T 2yud_A 160 CLLFPPD-------ESIDLYQVIHKMR 179 (180)
T ss_dssp HHHSCCC-------SSSCSHHHHHHHH
T ss_pred HHhcccC-------cCccHHHHHHhhc
Confidence 9999986 5799999999864
No 2
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=2.3e-52 Score=391.88 Aligned_cols=138 Identities=28% Similarity=0.552 Sum_probs=132.5
Q ss_pred CCCCceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCCCCeeEEEEecCCCCCCCC
Q 005164 452 EYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKN 531 (710)
Q Consensus 452 ~y~~ARFFIIKS~nEdNIhkSIKyGVWaTTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~SGqFqG~AeM~SpVDf~ks 531 (710)
...++|||||||+++||||+||+||||+||++||++|++||++++ +||||||||+||+|||||||++++|+ ..
T Consensus 4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~------~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~ 76 (141)
T 2yu6_A 4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS------IVYLVFSVQGSGHFQGFSRMSSEIGR-EK 76 (141)
T ss_dssp CCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSS------CEEEEEEESSSSEECEEEEECSCSSS-CC
T ss_pred CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcCC------cEEEEEEECCCCeEEEEEEEcccCCC-CC
Confidence 357899999999999999999999999999999999999999983 99999999999999999999999999 56
Q ss_pred chhhccccccCccceeEEEeecCCCccccccccCCCCCCceeecCCCcccchHHHHHHHHHHhcC
Q 005164 532 VEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDH 596 (710)
Q Consensus 532 ~~~WqqdKw~G~F~VkWi~vkDVPf~~lrHI~N~~NeNKPVt~SRDgQEIe~e~G~qLLkIF~~~ 596 (710)
..+|++++|+|.|+|+||+++||||+.++||+|++||||||+++||||||++++|++||+||+++
T Consensus 77 ~~~W~~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~~G~~l~~if~~~ 141 (141)
T 2yu6_A 77 SQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERL 141 (141)
T ss_dssp CCCCSCSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTTHHHHHHGGGGTC
T ss_pred CccccccccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHHHHHHHHHHHhhC
Confidence 67899999999999999999999999999999999999999999999999999999999999864
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=96.17 E-value=0.01 Score=55.70 Aligned_cols=125 Identities=11% Similarity=0.173 Sum_probs=81.3
Q ss_pred eEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeCCC--------CCeeEEEEecCCCCC
Q 005164 457 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTS--------GQFVGLAEMAGPVDF 528 (710)
Q Consensus 457 RFFIIKS~nEdNIhkSIKyGVWaTTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN~S--------GqFqG~AeM~SpVDf 528 (710)
+|.|+|| +.|++...++.|+|-. .+..+..-++ - ..+..+||++-+.. ..|.|++++++..-.
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr~---m----k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~ 72 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLSR---V----KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV 72 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTT---C----CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHHh---C----CCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEe
Confidence 6899999 8999999999999977 5554432221 1 23468888887765 799999999985532
Q ss_pred CCCchhhccccc-----cCccceeEEEeecCCCccccccccCCCCC-----CceeecCCCcccchHHHHHHHHHH
Q 005164 529 NKNVEYWQQDKW-----TGCFPVKWHIVKDVPNSLLKHITLENNEN-----KPVTNSRDTQEIKLEQGLKLIKIF 593 (710)
Q Consensus 529 ~ks~~~WqqdKw-----~G~F~VkWi~vkDVPf~~lrHI~N~~NeN-----KPVt~SRDgQEIe~e~G~qLLkIF 593 (710)
+.+ .+|-+.+| --...|+++.+..|+++.+.. .+.+=.| ..+ .-+--++|..+....||+.+
T Consensus 73 D~t-~~~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~-~l~fi~~k~~w~~~l-~r~gv~pV~~~d~~~I~~~m 144 (145)
T 2hd9_A 73 DFS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN-DLKFIKNKKRWSMHF-FGKAMRELPEEDYKLIEKLL 144 (145)
T ss_dssp CCC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG-GCTTCCCSTTGGGGT-TTCSEEEECHHHHHHHHHHC
T ss_pred CCC-ccCCCcccccCCeeEEEeCEEEeeccCcHHHHHh-hhhhhccccccccee-cccCceEcCHHHHHHHHHhh
Confidence 221 12222222 123568888888998876664 3332111 111 02337999999999998764
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=94.96 E-value=0.046 Score=51.39 Aligned_cols=124 Identities=13% Similarity=0.089 Sum_probs=77.5
Q ss_pred ceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEe-----C-CCCCeeEEEEecCCCC--
Q 005164 456 AKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSV-----N-TSGQFVGLAEMAGPVD-- 527 (710)
Q Consensus 456 ARFFIIKS~nEdNIhkSIKyGVWaTTp~nnkKLn~AFrea~~k~~~~pVfLfFSV-----N-~SGqFqG~AeM~SpVD-- 527 (710)
.+|.|+|+- ++++...++.|+|-. .+.-+.+-+ .- ..+..+||+.. | .-..|.|++++++..-
T Consensus 4 m~YWL~~se-~~~~~~~~~~g~wGV-n~~arn~lr---~M----k~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D 74 (147)
T 2p5d_A 4 MAYWLCITN-EDNWKVIKEKKIWGV-AERYKNTIN---KV----KVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKD 74 (147)
T ss_dssp CCEEEEEEC-HHHHHHHHHHCEEEE-CGGGHHHHT---TC----CTTCEEEEEECCBCSTTCBCCEEEEEEEECSCCEEC
T ss_pred ccceeeecC-HHHHHHHHHcCeeec-CHHHHHHHH---hC----CCCCEEEEEEecccCCCCCCCEEEEEEEEecccccC
Confidence 479999986 677999999999966 444333222 11 23456777722 2 3468999999998542
Q ss_pred ---CCCCchhhccc-cccCccceeEEEe--ecCCCcccc----ccccC--CCCCCceeecCCCcccchHHHHHHHHH
Q 005164 528 ---FNKNVEYWQQD-KWTGCFPVKWHIV--KDVPNSLLK----HITLE--NNENKPVTNSRDTQEIKLEQGLKLIKI 592 (710)
Q Consensus 528 ---f~ks~~~Wqqd-Kw~G~F~VkWi~v--kDVPf~~lr----HI~N~--~NeNKPVt~SRDgQEIe~e~G~qLLkI 592 (710)
|+....|...+ +| -..+|+|+.. ..||...|+ +|++. |.+ .-|..+ -++|..+.-..||++
T Consensus 75 ~t~~dp~~~y~~~~~~w-~~VdV~~v~~~~~~v~L~~Lk~~L~fi~~~~~~~~-~L~r~g--v~pV~~~~~~~I~~~ 147 (147)
T 2p5d_A 75 SSKIFKPTPRNPNEKFP-YRVKLKEIKVFEPPINFKELIPKLKFITNKKRWSG-HLMGKA--MREIPEEDYKLIVGN 147 (147)
T ss_dssp CCCCSCCBTTBTTCCCC-EEEEEEEEEEEEEEEEHHHHGGGCTTCCCSSSCCC---CCCS--EEEECHHHHHHHHTC
T ss_pred CcccCcCccCcCCCCCc-eEEEEEEEeecCCccCHHHHHhhhhhcccchhhHH-HHhcCC--ceECCHHHHHHHHhC
Confidence 22222222111 22 3688999987 888887776 22222 222 224555 899999998888853
No 5
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=52.45 E-value=25 Score=33.90 Aligned_cols=131 Identities=14% Similarity=0.316 Sum_probs=76.4
Q ss_pred eEEEEec----CChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEEecCC-----C
Q 005164 457 KFFVIKS----YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGP-----V 526 (710)
Q Consensus 457 RFFIIKS----~nEdNIhkSIKyGVWaTTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN-~SGqFqG~AeM~Sp-----V 526 (710)
+|.++|| |+.||+.+ -+...|.-..+-..|- -.|+. ..+...||+.-| ......|+||+++. .
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~WdGVRNyqArN--~mr~M----k~GD~~ffYHS~c~~pgIvGi~eVv~e~ypD~t 74 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWDGVRNYQARN--FLRTM----AEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPT 74 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEECCCCCHHHHH--HHHHC----CTTCEEEEEECSSSSCEEEEEEEEEEEEEECGG
T ss_pred ceeeEecCCCeeeHHHHhc-CCcEecCCcccHHHHH--HHHhc----CCCCEEEEEecCCCCCEEEEEEEEeEccCCCcc
Confidence 4788886 67888887 5557897554322111 11222 123566667666 88999999999974 3
Q ss_pred CCCCCchhhcc------ccccCccceeEEEe--ecCCCccccccccCCCCCCceee-cC-CCcccchHHHHHHHHHHhcC
Q 005164 527 DFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHITLENNENKPVTN-SR-DTQEIKLEQGLKLIKIFKDH 596 (710)
Q Consensus 527 Df~ks~~~Wqq------dKw~G~F~VkWi~v--kDVPf~~lrHI~N~~NeNKPVt~-SR-DgQEIe~e~G~qLLkIF~~~ 596 (710)
.|+....||.. -+|. .+.|+-+.. +.|+...+|... ++.+-.-|+. +| --|-|..++-..||+|=.++
T Consensus 75 ~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pv~L~elK~~~-~L~~m~Lv~~g~RLSV~PVt~~ew~~I~~l~~~~ 152 (157)
T 2eve_A 75 ALDPDSHYHDAKATTEKNPWS-ALDIGFVDIFKNVLGLGYLKQQS-QLEQLPLVQKGSRLSVMPVTAEQWAAILALRLEH 152 (157)
T ss_dssp GGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHHTCG-GGTTCGGGSTTCCCSEEEECHHHHHHHHHHHC--
T ss_pred cccccCcCcCcccCCCCCCEE-EEEEEEeeecCCccCHHHHhcCc-ccccCceeeccCCcCceecCHHHHHHHHHHhhhh
Confidence 45556667732 2453 455555443 455555555432 3333344444 23 34778888888888875544
No 6
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=26.94 E-value=1.1e+02 Score=30.07 Aligned_cols=131 Identities=17% Similarity=0.246 Sum_probs=77.7
Q ss_pred eEEEEec-------------CChhHHHHH-hhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEE
Q 005164 457 KFFVIKS-------------YSEDDVHKS-IKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAE 521 (710)
Q Consensus 457 RFFIIKS-------------~nEdNIhkS-IKyGVWaTTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN-~SGqFqG~Ae 521 (710)
+|.++|| |+.||+... .+...|.=..+-..|-. .|+.+ .+...||+--| +--...|+|+
T Consensus 2 ~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGVRNyqARN~--mR~Mk----~GD~~fFYHSnck~pgIvGi~e 75 (176)
T 3eop_A 2 SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNF--LRAMK----LGEEAFFYHSNCKEPGIAGLMK 75 (176)
T ss_dssp CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHH--HHHCC----TTCEEEEEECCSSSCEEEEEEE
T ss_pred ceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCcccHHHHHH--HHhcC----CCCEEEEEecCCCCCeEEEEEE
Confidence 5778886 677888765 34567886544322211 12221 23455556545 7889999999
Q ss_pred ecCCC-----CCCCCchhhcc------ccccCccceeEEEe--ecCCCccccccc-------cCCCCCCceeecC-CCcc
Q 005164 522 MAGPV-----DFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHIT-------LENNENKPVTNSR-DTQE 580 (710)
Q Consensus 522 M~SpV-----Df~ks~~~Wqq------dKw~G~F~VkWi~v--kDVPf~~lrHI~-------N~~NeNKPVt~SR-DgQE 580 (710)
++... .|+....||.. -||. .+.|+-+.. +-|+..++|... -++.+-.-|+.+| --|-
T Consensus 76 Vv~e~ypD~T~fDp~s~YyDpkS~~~~prW~-~VdV~~v~~~~~~vtL~eLK~~~~~~~~~~~~L~~m~Lvr~~RLSV~P 154 (176)
T 3eop_A 76 IVKEAYPDHTQFEKNNPHYDPSSKEDNPKWS-MVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQP 154 (176)
T ss_dssp EEEEEEECGGGTCTTSTTCCTTCCTTSCSCE-EEEEEEEEEEEEEEEHHHHHHHHHHHHHHTCTTSSCHHHHCTTCSEEE
T ss_pred EeeccccCCcccCCCCCCCCccCcCCCCCEE-EEEEEEeeecCCcccHHHHhcCcccccccccccccCceeccCccCcee
Confidence 99742 35666667642 2564 466666654 456666777552 1344444455555 3466
Q ss_pred cchHHHHHHHHHHh
Q 005164 581 IKLEQGLKLIKIFK 594 (710)
Q Consensus 581 Ie~e~G~qLLkIF~ 594 (710)
|..++-..||++-+
T Consensus 155 Vt~~ew~~I~~l~~ 168 (176)
T 3eop_A 155 LTQEEFDFVLSLEE 168 (176)
T ss_dssp ECHHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHh
Confidence 77777777777644
No 7
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=23.79 E-value=1.1e+02 Score=29.87 Aligned_cols=75 Identities=27% Similarity=0.434 Sum_probs=46.8
Q ss_pred CceEEEEec----CChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEeC-CCCCeeEEEEecCCC---
Q 005164 455 DAKFFVIKS----YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGPV--- 526 (710)
Q Consensus 455 ~ARFFIIKS----~nEdNIhkSIKyGVWaTTp~nnkKLn~AFrea~~k~~~~pVfLfFSVN-~SGqFqG~AeM~SpV--- 526 (710)
..+|.++|| |+.||+.. -....|.-..+-..|- -.++. ..+...||+.-| .-..+.|+|++++..
T Consensus 18 ~M~YWL~KSEP~~~Siddl~~-~~~~~WdGVRNyqARN--~mr~M----k~GD~vfFYHS~c~~pgIvGi~eVv~e~ypD 90 (172)
T 2ar1_A 18 DIHYWLLKSEPHKFSIDDLAK-QKTSPWDGVRNYAARN--NMRAM----SVGDKVLFYHSNTKEPGVAGLAEVVRLAYDD 90 (172)
T ss_dssp SCCEEEEEECTTTSCHHHHHH-HSEEECCCCCCHHHHH--HHHHC----CTTCEEEEEECSSSSCEEEEEEEEEEEEEEC
T ss_pred ccceEEEEcCCCccCHHHHHh-cCceeccCcCcHHHHH--HHHhc----CCCCEEEEEecCCCCCEEEEEEEEeeeccCC
Confidence 347999997 67888887 4446797554432211 11222 123455666555 889999999999842
Q ss_pred --CCCCCchhhc
Q 005164 527 --DFNKNVEYWQ 536 (710)
Q Consensus 527 --Df~ks~~~Wq 536 (710)
.|+....||.
T Consensus 91 ~t~fdp~s~YyD 102 (172)
T 2ar1_A 91 FTALDKTSEYFD 102 (172)
T ss_dssp GGGGCTTSTTCC
T ss_pred cccccccCcccC
Confidence 3555566775
No 8
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=11.98 E-value=35 Score=29.59 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=12.2
Q ss_pred ceeecCCCcccchHH
Q 005164 571 PVTNSRDTQEIKLEQ 585 (710)
Q Consensus 571 PVt~SRDgQEIe~e~ 585 (710)
-|++.||||||+.++
T Consensus 9 tikiqrdgqeieidi 23 (96)
T 2jvf_A 9 TIKIQRDGQEIEIDI 23 (96)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEeeCCeEEEEEE
Confidence 578899999998653
No 9
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=10.51 E-value=2.7e+02 Score=24.38 Aligned_cols=45 Identities=22% Similarity=0.172 Sum_probs=32.6
Q ss_pred EEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEE
Q 005164 458 FFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLF 508 (710)
Q Consensus 458 FFIIKS~nEdNIhkSIKyGVWaTTp~nnkKLn~AFrea~~k~~~~pVfLfF 508 (710)
-.+++|.--+|++.+|+ ......+|-+||++++..+....|.|+|
T Consensus 11 ~~~~~~~~~~dl~f~I~------~~t~v~kLi~ayc~~~~I~~~~~IrllF 55 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIP------VDFTVKDLIKRYCTEVKISFHERIRLEF 55 (82)
T ss_dssp EEEEEESSSCCEEEEEE------TTSBHHHHHHHHHHHHTCCCCTTCEEEE
T ss_pred HHhhhccCCCCeEEEec------CCCCHHHHHHHHHHHcCCCcCceEEEEE
Confidence 34566666666664443 3456789999999999877777899988
No 10
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A
Probab=8.41 E-value=1e+02 Score=28.27 Aligned_cols=27 Identities=22% Similarity=0.615 Sum_probs=15.3
Q ss_pred cccCCCCccCccccCCCCccccccCCC
Q 005164 103 YVSQDGVDMTSGVYGDNGSLMYHHGYG 129 (710)
Q Consensus 103 Yvn~dg~e~~~gvy~dn~Sl~y~~Gyg 129 (710)
++..||+.|.+-.+|+...+|+.||++
T Consensus 3 ~~~~~g~~l~y~~~G~g~~vvllHG~~ 29 (271)
T 3ia2_A 3 FVAKDGTQIYFKDWGSGKPVLFSHGWL 29 (271)
T ss_dssp EECTTSCEEEEEEESSSSEEEEECCTT
T ss_pred EEcCCCCEEEEEccCCCCeEEEECCCC
Confidence 455566666555555555566655554
Done!