Query 005166
Match_columns 710
No_of_seqs 370 out of 2255
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 19:08:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 100.0 1.8E-29 3.9E-34 290.4 13.0 479 120-648 31-606 (775)
2 COG0326 HtpG Molecular chapero 99.9 2.6E-22 5.6E-27 227.0 13.4 164 199-372 16-208 (623)
3 PRK05218 heat shock protein 90 99.9 3E-20 6.5E-25 214.8 23.9 299 198-581 14-350 (613)
4 PTZ00130 heat shock protein 90 99.8 1.8E-21 4E-26 226.6 11.6 171 191-372 68-270 (814)
5 KOG1845 MORC family ATPases [C 99.8 4.2E-22 9E-27 230.0 5.5 336 248-650 1-357 (775)
6 PRK14083 HSP90 family protein; 99.8 1.4E-19 3E-24 208.1 23.0 298 198-581 11-330 (601)
7 PTZ00272 heat shock protein 83 99.8 9.1E-20 2E-24 212.0 15.0 164 198-372 13-205 (701)
8 KOG0019 Molecular chaperone (H 99.7 1.1E-17 2.3E-22 186.9 10.3 164 199-373 46-235 (656)
9 KOG0020 Endoplasmic reticulum 99.7 5E-17 1.1E-21 177.0 8.8 158 204-373 89-281 (785)
10 PF13589 HATPase_c_3: Histidin 99.7 1.2E-17 2.5E-22 158.6 2.7 97 211-312 3-100 (137)
11 PF07496 zf-CW: CW-type Zinc F 99.6 4E-16 8.7E-21 124.2 1.2 45 600-644 1-49 (50)
12 PRK00095 mutL DNA mismatch rep 99.4 8.8E-12 1.9E-16 145.2 23.3 140 191-343 2-147 (617)
13 COG0323 MutL DNA mismatch repa 99.3 2.7E-12 5.8E-17 149.5 11.1 140 192-343 4-149 (638)
14 TIGR00585 mutl DNA mismatch re 99.3 4.9E-12 1.1E-16 135.7 12.1 140 191-343 2-148 (312)
15 COG1389 DNA topoisomerase VI, 99.1 4.8E-10 1E-14 123.2 9.5 134 209-347 35-183 (538)
16 KOG1979 DNA mismatch repair pr 99.0 1.3E-09 2.9E-14 122.1 9.7 142 190-343 6-153 (694)
17 KOG1978 DNA mismatch repair pr 99.0 1.1E-09 2.3E-14 125.3 8.5 138 193-342 2-145 (672)
18 PRK14868 DNA topoisomerase VI 98.8 6.2E-08 1.3E-12 113.4 14.3 94 210-309 46-149 (795)
19 PRK04184 DNA topoisomerase VI 98.8 7.6E-08 1.6E-12 110.1 14.0 96 211-309 37-142 (535)
20 TIGR01052 top6b DNA topoisomer 98.6 2.8E-07 6.1E-12 104.4 11.3 96 210-310 28-133 (488)
21 PRK05559 DNA topoisomerase IV 98.5 4.4E-07 9.4E-12 106.4 11.4 122 209-344 36-175 (631)
22 TIGR01055 parE_Gneg DNA topois 98.4 6E-07 1.3E-11 105.1 10.2 120 211-344 31-168 (625)
23 PRK14939 gyrB DNA gyrase subun 98.3 3.1E-06 6.8E-11 100.5 12.6 120 211-345 38-174 (756)
24 PRK05644 gyrB DNA gyrase subun 98.3 3.9E-06 8.4E-11 98.6 12.3 120 211-344 38-173 (638)
25 smart00433 TOP2c Topoisomerase 98.3 2.7E-06 5.9E-11 99.2 9.9 116 214-344 5-138 (594)
26 TIGR01059 gyrB DNA gyrase, B s 98.3 4.9E-06 1.1E-10 98.1 11.9 120 211-345 31-167 (654)
27 KOG1977 DNA mismatch repair pr 98.2 9E-07 2E-11 101.3 3.8 107 193-309 3-115 (1142)
28 PRK14867 DNA topoisomerase VI 98.2 5.5E-06 1.2E-10 96.9 10.2 94 211-309 37-140 (659)
29 PF02518 HATPase_c: Histidine 98.2 1.2E-06 2.5E-11 79.0 3.6 89 211-307 6-99 (111)
30 TIGR01058 parE_Gpos DNA topois 97.7 0.00015 3.2E-09 85.4 10.6 118 213-345 37-172 (637)
31 COG0187 GyrB Type IIA topoisom 97.6 0.0002 4.4E-09 82.7 10.0 156 213-393 39-212 (635)
32 COG3290 CitA Signal transducti 97.4 0.00016 3.5E-09 82.3 4.9 85 210-306 427-519 (537)
33 PLN03128 DNA topoisomerase 2; 97.4 0.00053 1.2E-08 85.0 9.7 86 211-305 53-154 (1135)
34 PLN03237 DNA topoisomerase 2; 97.4 0.00069 1.5E-08 85.0 10.3 86 211-305 78-179 (1465)
35 cd00075 HATPase_c Histidine ki 97.3 0.0007 1.5E-08 57.2 6.4 86 212-306 2-93 (103)
36 smart00387 HATPase_c Histidine 97.2 0.00072 1.6E-08 58.1 5.9 73 211-291 6-80 (111)
37 PRK10604 sensor protein RstB; 97.2 0.00086 1.9E-08 74.9 7.9 90 211-307 320-412 (433)
38 PHA02569 39 DNA topoisomerase 97.1 0.0014 3E-08 76.9 8.8 118 213-345 48-185 (602)
39 PRK10364 sensor protein ZraS; 96.9 0.002 4.3E-08 72.1 7.9 83 211-306 349-436 (457)
40 PRK09470 cpxA two-component se 96.9 0.0019 4.2E-08 71.2 7.8 89 211-306 354-445 (461)
41 PTZ00109 DNA gyrase subunit b; 96.9 0.003 6.5E-08 76.2 9.5 119 213-345 132-307 (903)
42 TIGR01386 cztS_silS_copS heavy 96.9 0.0025 5.4E-08 70.1 8.2 87 211-304 354-445 (457)
43 PRK09467 envZ osmolarity senso 96.9 0.0025 5.4E-08 70.2 7.9 87 211-306 332-421 (435)
44 PRK10755 sensor protein BasS/P 96.8 0.0023 5E-08 68.8 6.5 87 210-307 247-338 (356)
45 TIGR02938 nifL_nitrog nitrogen 96.8 0.0039 8.4E-08 68.6 8.2 86 211-306 388-482 (494)
46 COG0642 BaeS Signal transducti 96.7 0.0024 5.2E-08 65.1 5.8 71 209-290 227-298 (336)
47 PRK09303 adaptive-response sen 96.7 0.0056 1.2E-07 67.5 8.6 92 211-308 273-367 (380)
48 PRK11086 sensory histidine kin 96.6 0.0052 1.1E-07 69.4 8.3 82 211-305 434-522 (542)
49 TIGR02966 phoR_proteo phosphat 96.6 0.0081 1.8E-07 62.5 8.7 90 211-307 230-324 (333)
50 PRK15053 dpiB sensor histidine 96.5 0.0047 1E-07 70.4 7.0 85 211-305 433-526 (545)
51 PRK11006 phoR phosphate regulo 96.5 0.008 1.7E-07 66.8 8.3 90 210-306 317-411 (430)
52 PTZ00108 DNA topoisomerase 2-l 96.4 0.014 3E-07 73.9 10.8 122 211-345 58-203 (1388)
53 PRK10549 signal transduction h 96.4 0.0075 1.6E-07 66.9 7.4 90 211-307 353-447 (466)
54 PRK11100 sensory histidine kin 96.3 0.008 1.7E-07 66.3 7.4 89 210-306 368-461 (475)
55 TIGR02916 PEP_his_kin putative 96.2 0.0083 1.8E-07 71.1 7.1 84 211-307 580-669 (679)
56 PRK11360 sensory histidine kin 96.2 0.011 2.3E-07 66.8 7.5 86 211-307 501-590 (607)
57 PRK10815 sensor protein PhoQ; 96.2 0.01 2.2E-07 67.8 7.2 85 211-306 379-466 (485)
58 PRK10337 sensor protein QseC; 95.9 0.015 3.2E-07 64.5 6.8 84 211-306 353-439 (449)
59 COG4191 Signal transduction hi 95.9 0.011 2.5E-07 68.2 5.6 57 211-273 498-559 (603)
60 PRK15347 two component system 95.7 0.024 5.3E-07 68.7 8.1 87 211-308 514-604 (921)
61 TIGR01925 spIIAB anti-sigma F 95.6 0.034 7.3E-07 52.1 7.1 82 210-305 39-125 (137)
62 PRK11091 aerobic respiration c 95.6 0.028 6.1E-07 67.4 7.9 93 211-308 399-495 (779)
63 PRK09835 sensor kinase CusS; P 95.6 0.03 6.6E-07 62.3 7.7 89 210-305 375-468 (482)
64 PRK11073 glnL nitrogen regulat 95.5 0.028 6.2E-07 60.0 6.9 90 211-307 238-337 (348)
65 TIGR03785 marine_sort_HK prote 95.3 0.047 1E-06 65.4 8.3 90 211-307 598-692 (703)
66 PRK13837 two-component VirA-li 95.2 0.035 7.5E-07 67.5 7.1 90 211-307 561-664 (828)
67 TIGR02956 TMAO_torS TMAO reduc 94.8 0.062 1.3E-06 65.7 7.8 88 211-308 580-673 (968)
68 PRK11466 hybrid sensory histid 94.8 0.06 1.3E-06 65.6 7.6 87 211-308 562-652 (914)
69 PRK10490 sensor protein KdpD; 94.6 0.062 1.3E-06 66.2 7.0 88 211-307 779-871 (895)
70 PRK10547 chemotaxis protein Ch 94.5 0.077 1.7E-06 63.3 7.4 87 213-307 388-512 (670)
71 PRK10841 hybrid sensory kinase 94.3 0.092 2E-06 64.9 7.6 89 211-307 563-656 (924)
72 KOG0787 Dehydrogenase kinase [ 94.3 0.098 2.1E-06 57.8 6.8 74 211-290 261-349 (414)
73 PRK11107 hybrid sensory histid 94.2 0.11 2.5E-06 62.9 7.9 95 211-308 409-508 (919)
74 PRK11644 sensory histidine kin 94.1 0.075 1.6E-06 61.1 5.8 68 211-304 411-482 (495)
75 PRK03660 anti-sigma F factor; 93.8 0.2 4.3E-06 47.3 7.2 45 210-260 39-88 (146)
76 PRK04069 serine-protein kinase 93.7 0.11 2.4E-06 50.8 5.6 52 211-268 43-99 (161)
77 PRK10618 phosphotransfer inter 93.6 0.17 3.6E-06 62.6 8.0 93 211-308 566-662 (894)
78 COG3850 NarQ Signal transducti 93.5 0.11 2.5E-06 59.6 5.8 76 211-309 482-559 (574)
79 PRK13557 histidine kinase; Pro 93.4 0.22 4.7E-06 56.0 8.0 92 211-307 278-383 (540)
80 PRK13560 hypothetical protein; 93.3 0.15 3.3E-06 60.3 6.7 71 213-305 714-792 (807)
81 TIGR01924 rsbW_low_gc serine-p 93.1 0.15 3.3E-06 49.9 5.3 85 210-304 42-131 (159)
82 PF13581 HATPase_c_2: Histidin 93.0 0.19 4.2E-06 46.1 5.6 77 211-302 32-113 (125)
83 COG4585 Signal transduction hi 92.9 0.14 3.1E-06 56.1 5.2 71 210-306 279-353 (365)
84 PRK09959 hybrid sensory histid 92.7 0.27 5.8E-06 62.0 8.1 93 211-307 829-925 (1197)
85 COG2205 KdpD Osmosensitive K+ 91.8 0.53 1.2E-05 56.8 8.5 89 212-308 777-869 (890)
86 COG0643 CheA Chemotaxis protei 91.7 0.44 9.6E-06 57.4 7.9 99 194-308 424-563 (716)
87 PF07744 SPOC: SPOC domain; I 90.1 0.17 3.7E-06 46.5 1.9 45 70-114 66-119 (119)
88 PRK10600 nitrate/nitrite senso 90.0 0.31 6.6E-06 56.6 4.3 72 211-307 470-545 (569)
89 COG5002 VicK Signal transducti 89.9 0.36 7.8E-06 53.2 4.4 71 212-290 344-417 (459)
90 COG3920 Signal transduction hi 89.8 0.38 8.3E-06 49.9 4.3 46 211-261 123-174 (221)
91 COG2172 RsbW Anti-sigma regula 89.3 0.82 1.8E-05 44.5 6.0 85 210-308 40-130 (146)
92 COG2972 Predicted signal trans 87.7 0.86 1.9E-05 51.9 5.8 54 210-267 350-407 (456)
93 COG4192 Signal transduction hi 86.7 1.1 2.4E-05 51.1 5.6 60 210-274 564-626 (673)
94 COG5000 NtrY Signal transducti 86.5 0.82 1.8E-05 53.6 4.7 56 211-272 601-666 (712)
95 COG4251 Bacteriophytochrome (l 81.1 2.2 4.7E-05 50.5 5.1 72 188-268 617-691 (750)
96 smart00249 PHD PHD zinc finger 80.9 1.4 3E-05 33.0 2.4 33 598-630 10-45 (47)
97 PRK13559 hypothetical protein; 79.8 1.9 4.1E-05 46.4 4.0 47 211-261 268-319 (361)
98 PRK10935 nitrate/nitrite senso 79.2 2.4 5.1E-05 48.6 4.8 46 211-261 472-518 (565)
99 COG4564 Signal transduction hi 78.3 3.9 8.4E-05 45.1 5.7 74 213-309 358-439 (459)
100 COG3852 NtrB Signal transducti 61.0 14 0.0003 40.7 5.2 62 211-272 242-313 (363)
101 COG3851 UhpB Signal transducti 57.2 13 0.00029 41.6 4.4 45 210-260 410-455 (497)
102 PF00628 PHD: PHD-finger; Int 56.5 2.4 5.2E-05 33.3 -1.0 34 597-630 9-46 (51)
103 COG3275 LytS Putative regulato 47.7 17 0.00036 42.1 3.4 45 211-261 457-507 (557)
104 PRK13610 photosystem II reacti 41.4 11 0.00023 35.5 0.5 17 82-98 91-107 (113)
105 TIGR03047 PS_II_psb28 photosys 39.4 13 0.00029 34.7 0.9 17 82-98 84-100 (109)
106 KOG0355 DNA topoisomerase type 38.8 1.1E+02 0.0024 37.8 8.3 45 211-263 54-102 (842)
107 PF03912 Psb28: Psb28 protein; 38.2 12 0.00026 35.0 0.4 15 84-98 86-100 (108)
108 PLN00039 photosystem II reacti 37.2 16 0.00034 34.3 0.9 17 82-98 85-101 (111)
109 PRK13612 photosystem II reacti 36.1 17 0.00036 34.3 0.9 17 82-98 87-103 (113)
110 PF14501 HATPase_c_5: GHKL dom 36.0 63 0.0014 28.7 4.7 41 211-257 6-51 (100)
111 PRK13611 photosystem II reacti 35.4 17 0.00038 33.7 0.9 17 82-98 80-96 (104)
112 CHL00128 psbW photosystem II p 34.9 18 0.00039 34.1 0.9 17 82-98 87-103 (113)
113 COG2865 Predicted transcriptio 28.2 66 0.0014 37.4 4.2 69 209-291 269-352 (467)
114 KOG1973 Chromatin remodeling p 26.5 30 0.00064 37.3 1.0 29 601-630 231-263 (274)
115 cd00594 KU Ku-core domain; inc 25.9 73 0.0016 33.5 3.8 67 49-116 87-161 (272)
116 smart00559 Ku78 Ku70 and Ku80 24.4 83 0.0018 30.2 3.6 67 50-117 35-110 (140)
117 PF06540 GMAP: Galanin message 22.9 74 0.0016 26.9 2.4 34 68-102 11-44 (62)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.8e-29 Score=290.39 Aligned_cols=479 Identities=21% Similarity=0.226 Sum_probs=317.6
Q ss_pred CCccceeeeeccccccccCCCCCCCCCCcccc-----cCCccccccCCCCCCCCc---------------CCcccccc-c
Q 005166 120 NFTNIRVAYKMEKTRNASNGRGHGESGRSCQV-----VRPTATKANINDSPTLPV---------------NIVKETVS-R 178 (710)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---------------~~~~~~~~-~ 178 (710)
...|+...+.+..+.++ .+.....+.-.|.- ..+.+.++.+...++.++ ++.|+++- .
T Consensus 31 ~ygnG~ksgs~r~gkd~-~~~tk~~~~~s~~~~sqt~~e~~~~~~vvvP~~t~~~~~~~~~~~k~~~~l~~~~c~sfwKa 109 (775)
T KOG1845|consen 31 DYGNGLKSGSMRIGKDF-ILFTKKESTMSCLFLSQTFHESEADDAVVVPCPTFNPRTREIVTEKFAFSLEAIYCRSFWKA 109 (775)
T ss_pred cccCcccccccccCccc-ceeeccccccceeeeecccccccccccceecccccccccccccccccccccchhhhcCcccc
Confidence 35677777777666544 22222222222211 224445555555555553 34477622 2
Q ss_pred c-----ccccccCCCC-cceecCCHHHHHHhhccccCCHHHHHHHHHhccccc---CCCccEEEEEeeecccCCCCcCEE
Q 005166 179 G-----NACIQAGPLE-KNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYFKKAGKDIPML 249 (710)
Q Consensus 179 ~-----~~~~~~~~~~-~~~~~v~p~~L~~lst~~~~~~~~AIaELIDNS~DA---~A~~I~I~I~~~~~~~~~~~~~~L 249 (710)
| +..+-.+..+ -.++.++|+|||+++++| .|.++|++||+|||+|. +|+.+.|. .+ +...+.....+
T Consensus 110 g~~~~a~~~~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd--~I-~p~~d~~i~a~ 185 (775)
T KOG1845|consen 110 GDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVD--YI-NPVMDIFIRAL 185 (775)
T ss_pred cchhcccccceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEee--ee-cccccccceeE
Confidence 2 1222233334 599999999999999999 89999999999999997 56664443 22 11122224445
Q ss_pred EEE-----eCCCCCChhhHHhhhhcccCCCCCCCCCcccccCceeeeeccccCceEEEEEeeC------CCCceeEEEEe
Q 005166 250 SII-----DDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA------DSRSIAFLSQS 318 (710)
Q Consensus 250 ~I~-----DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~------~~~s~~~ls~s 318 (710)
+|. |||+||.++-+..+|.+|++.+. .-...+|+||+||+++.|++|.+++|++|.. ..+++|+++++
T Consensus 186 ~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~t 264 (775)
T KOG1845|consen 186 VVQLKRISDDGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYT 264 (775)
T ss_pred EeeccceeccccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEe
Confidence 555 78999999999999999998875 3467899999999999999999999999943 35789999999
Q ss_pred ec--CCCceEEEcC----cccCCCCc-EEEEEecCcccchhhhhHHh-----HhhhCCCchh--hHHHh-------hc--
Q 005166 319 LN--QGKDNLEIPI----VSYYRKGQ-FMELDTVVQSEATAKYNLKS-----IKEFSPFNKY--LIGEK-------AG-- 375 (710)
Q Consensus 319 f~--~g~~~i~VPi----~~~~~~Gt-~I~l~~~~~~e~~~~~~L~~-----I~kySpF~s~--pI~e~-------~~-- 375 (710)
|. ++..+++||+ ...+.... +..+..+.. ..|..++.+ +++|+||.+. .+.+. +.
T Consensus 265 fL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~--~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef 342 (775)
T KOG1845|consen 265 FLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSG--VDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEF 342 (775)
T ss_pred eeccccCCceeEecchhhhhhhcccccccceeeccc--cccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchh
Confidence 94 5788999999 44442111 111112211 223334433 9999999984 22220 00
Q ss_pred --ccc-CCCCCcEEEEEeccCCC---CceeeeccCCCCCCCCCCcccceeecccccCCCCcccccCcchhhHHHHHhhhh
Q 005166 376 --LFQ-DKCTGTQIYIWNLDQWG---SNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIF 449 (710)
Q Consensus 376 --~~~-~~~~GT~IiI~nL~r~~---~~~eLdF~~d~~~~~~f~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLY 449 (710)
++. ...+||.+|+||+++|. +-.+++|+.+ +++|. -...++++.|.++||
T Consensus 343 ~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~--------~~~i~----------------~~~~~~~~s~~sil~ 398 (775)
T KOG1845|consen 343 GHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLD--------PHVIP----------------WTYCHSHLSEASILL 398 (775)
T ss_pred cchhhhccCCCceeeeechhhhcccccceeeccccC--------ccccc----------------ccchhhhhhcccccc
Confidence 122 25799999999997763 3478888764 24442 024568999999999
Q ss_pred cC--CCeEEEEcCeEecccccccccCcceee--cccccc-------eeEEEEEcccccccc-cccceEEEEEcCeeee--
Q 005166 450 LV--PRMKIYVQGSLVRSRPLAKSLNKTCVE--TGIIMG-------KSAHLTLGRCQLEWE-QMNCGIFLYWHGRLIE-- 515 (710)
Q Consensus 450 L~--PrmkI~LnG~kV~~~~i~~~L~~~~v~--~~~~~~-------~~V~it~G~~~~e~~-~~~~Gi~vY~nnRLIk-- 515 (710)
+. ++|.+.+.|+.+.++.+.....++... .+.... .......|+.+...+ ...+|+.|||.+|||.
T Consensus 399 ~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~ 478 (775)
T KOG1845|consen 399 LTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHG 478 (775)
T ss_pred hhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhc
Confidence 74 899999999999999988766554321 111100 112224566554432 2356999999999999
Q ss_pred --eeeeecccccCCCCCceEEEEEecCcccccCCCccccccCccCccCchHHHHHHHHHHHHHHHHHhhccccccccccc
Q 005166 516 --AYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDG 593 (710)
Q Consensus 516 --~~~kVg~q~~~~~~grGVIGVve~~~l~~~~~~~~~pthnKQdFe~t~~y~~L~~~L~e~~~eYW~~~~~~~~~~~~~ 593 (710)
++||.++. ..+.++++++|+.+++ ++++|++|+|+++-.-.+++.+..++++.||..+|+.+.+....
T Consensus 479 ~~~~~k~~n~--~~s~~~~~~~il~~n~--------~~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q 548 (775)
T KOG1845|consen 479 CRPFVKIDNA--TGSLGQAVIPILVGNF--------VETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQ 548 (775)
T ss_pred ccceeeecCC--Cccccccccceecccc--------cccCCCccccccccccccchhhhhhcccccccccccccCccchh
Confidence 99999985 4579999999999984 34699999999999899999999999999999999988765211
Q ss_pred CCCCC--------CCceeeCccchhhccCCCCCCCCCCCCCceecCCC---CCCCCCCCcccccCC
Q 005166 594 ALYKP--------DQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP---FEGLCDLPEQKVDAG 648 (710)
Q Consensus 594 ~~~~~--------~~~WVQCd~C~KWR~Lp~~~~~~~lp~~W~C~~n~---~~~sC~~pEe~~~~~ 648 (710)
.+... ...=-+| .+- ......--..|+|..++ .++.|+-+-...+.+
T Consensus 549 ~~~~~~~~~~~~Ke~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (775)
T KOG1845|consen 549 LQKERESTTTVVKEEKPENN---HLS-----SSKRTQRRKSTGRAISVAVEKFNLRSGPNGRGQID 606 (775)
T ss_pred hhhhhcccceeecccccccc---hhc-----chhccccccccccccccchhhhccccccCCcCCcc
Confidence 11100 0011122 111 11123344689999998 367777665555554
No 2
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.6e-22 Score=226.96 Aligned_cols=164 Identities=25% Similarity=0.340 Sum_probs=133.3
Q ss_pred HHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhh
Q 005166 199 YLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 262 (710)
Q Consensus 199 ~L~~lst~~~~~~~~AIaELIDNS~DA~----------------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ed 262 (710)
.|+-+..+.|+....+|+|||+||.||. ...+.|.|.. ++.+.+|+|.|||+|||++|
T Consensus 16 ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~------Dk~~kTLtI~DNGIGMT~~E 89 (623)
T COG0326 16 LLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISF------DKDNKTLTISDNGIGMTKDE 89 (623)
T ss_pred HHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEE------cccCCEEEEEeCCCCCCHHH
Confidence 5566678888999999999999999993 1356666653 34678999999999999999
Q ss_pred HHhhhh-cccCCC--------CC-CCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcCcc
Q 005166 263 VVRMTY-FGHKQP--------DA-DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS 332 (710)
Q Consensus 263 l~~~l~-fG~s~k--------~~-~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~ 332 (710)
+++.++ ++.|.. .. ++...||||||||||||| ++++|+|.||+.+..... .|.+ .|...|+|....
T Consensus 90 v~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~~~~-~W~S--~g~g~ytv~~~~ 165 (623)
T COG0326 90 VIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGEDEAY-HWES--DGEGEYTVEDID 165 (623)
T ss_pred HHHHHHHhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCCCcce-EEEE--cCCCceEEeecc
Confidence 999875 443321 11 368899999999999999 999999999999974444 7776 677889998877
Q ss_pred cCCC-CcEEEEEecCc-ccchhhhhHHh-HhhhCCCchhhHHH
Q 005166 333 YYRK-GQFMELDTVVQ-SEATAKYNLKS-IKEFSPFNKYLIGE 372 (710)
Q Consensus 333 ~~~~-Gt~I~l~~~~~-~e~~~~~~L~~-I~kySpF~s~pI~e 372 (710)
.+.. ||.|+|+++++ .+++.+|.|+. |.|||.|..+||..
T Consensus 166 ~~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~ 208 (623)
T COG0326 166 KEPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYI 208 (623)
T ss_pred CCCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEE
Confidence 7774 99999999875 47889999975 99999999999963
No 3
>PRK05218 heat shock protein 90; Provisional
Probab=99.86 E-value=3e-20 Score=214.79 Aligned_cols=299 Identities=21% Similarity=0.223 Sum_probs=188.8
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChh
Q 005166 198 SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 261 (710)
Q Consensus 198 ~~L~~lst~~~~~~~~AIaELIDNS~DA~----------------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 261 (710)
+.|..++.+.|+++..+|+|||+||+||. +....|.|.. +.+...|+|.|||+||+.+
T Consensus 14 ~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~------d~~~~~i~I~DnG~GMt~e 87 (613)
T PRK05218 14 QLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISF------DKEARTLTISDNGIGMTRE 87 (613)
T ss_pred HHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEE------cCCCCeEEEEECCCCCCHH
Confidence 46677788889999999999999999993 3445565542 2234579999999999999
Q ss_pred hHHhhh-hcccCCCC----------CCCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcC
Q 005166 262 DVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI 330 (710)
Q Consensus 262 dl~~~l-~fG~s~k~----------~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi 330 (710)
++.+.+ .+|+|.+. ..+...||+||+||+++++ ++++++|.||+.+....++.|.+ ++...+.+-.
T Consensus 88 el~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~~~~~~~w~~--~g~~~~~i~~ 164 (613)
T PRK05218 88 EVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFM-VADKVTVITRSAGPAAEAVRWES--DGEGEYTIEE 164 (613)
T ss_pred HHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhh-ccCEEEEEEcCCCCCCceEEEEE--eCCceeEEeE
Confidence 999865 46665321 1246799999999987655 99999999999774456888876 4455566544
Q ss_pred cccCCCCcEEEEEecCcc-cchhhhhHHh-HhhhCCCchhhHHHhhccccCCCCCcEEEEEeccCCCCceeeeccCCCCC
Q 005166 331 VSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNG 408 (710)
Q Consensus 331 ~~~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~pI~e~~~~~~~~~~GT~IiI~nL~r~~~~~eLdF~~d~~~ 408 (710)
..-..+||+|+++++.+. ++.+.+.++. |.+||.|..+||.. .. +. | +.-+....-|...
T Consensus 165 ~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~-----~~----~~---~---~~in~~~~~w~~~--- 226 (613)
T PRK05218 165 IEKEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKL-----EK----EE---E---ETINSASALWTRS--- 226 (613)
T ss_pred CCCCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEE-----ec----cc---c---eeecCCccceecC---
Confidence 433468999999998764 5566777765 99999999887742 10 00 0 0000000111110
Q ss_pred CCCCCcccceeecccccCCCCcccccCcchhhHHHHHhhhh---cCCCeEEEEcCeEecccccccccCcceeecccccce
Q 005166 409 GSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIF---LVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGK 485 (710)
Q Consensus 409 ~~~f~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLY---L~PrmkI~LnG~kV~~~~i~~~L~~~~v~~~~~~~~ 485 (710)
..|+. +.-...|..-++ -+|-+.|.++..- ..
T Consensus 227 -----~~~i~-------------------~~~~~~fy~~~~~~~~~pl~~i~~~~e~---------------------~~ 261 (613)
T PRK05218 227 -----KSEIT-------------------DEEYKEFYKHLAHDFDDPLFWIHNNVEG---------------------PF 261 (613)
T ss_pred -----Ccccc-------------------HHHHHHHhhhhcccccCCcEEEEcccCC---------------------ce
Confidence 01210 001122222222 2344444433211 01
Q ss_pred eEEEEEcccccc----c-ccccceEEEEEcCeeeeee-eeecccccCCCCCceEEEEEecCcccccCCCccccccCccCc
Q 005166 486 SAHLTLGRCQLE----W-EQMNCGIFLYWHGRLIEAY-KRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGF 559 (710)
Q Consensus 486 ~V~it~G~~~~e----~-~~~~~Gi~vY~nnRLIk~~-~kVg~q~~~~~~grGVIGVve~~~l~~~~~~~~~pthnKQdF 559 (710)
.++-.+++-... . .....|+.+|.|+|+|.-. ..+-|. +-+=|-|||+++.| | |+-+...+
T Consensus 262 ~~~gll~iP~~~~~~~~~~~~~~~~~lyvn~v~I~d~~~~lLP~-----wl~Fv~GVVDs~dL--p------lnvSRE~l 328 (613)
T PRK05218 262 EYTGLLYIPKKAPFDLFNRDRKGGLKLYVKRVFIMDDAEELLPE-----YLRFVKGVIDSEDL--P------LNVSREIL 328 (613)
T ss_pred EEEEEEEeCCCCccchhhhcccccEEEEECcEEeeCchhhhchH-----HHhheEEEeecCCC--C------CccCHHHH
Confidence 122122221110 0 1246899999999999744 334553 34556699999986 2 36777778
Q ss_pred cCchHHHHHHHHHHHHHHHHHh
Q 005166 560 LDCEPYARLEEWLGKVADEYWD 581 (710)
Q Consensus 560 e~t~~y~~L~~~L~e~~~eYW~ 581 (710)
.++..++++.+.|.+++.++..
T Consensus 329 q~~~~l~~i~~~l~~kv~~~l~ 350 (613)
T PRK05218 329 QEDRVVKKIRKAITKKVLDELE 350 (613)
T ss_pred hcCHHHHHHHHHHHHHHHHHHH
Confidence 8999889988888887776553
No 4
>PTZ00130 heat shock protein 90; Provisional
Probab=99.85 E-value=1.8e-21 Score=226.63 Aligned_cols=171 Identities=23% Similarity=0.341 Sum_probs=134.0
Q ss_pred ceecCCH-HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeeecccCCCCcCEEEEEe
Q 005166 191 NFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIID 253 (710)
Q Consensus 191 ~~~~v~p-~~L~~lst~~~~~~~~AIaELIDNS~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~D 253 (710)
.-|+... +.|+.++.+.|+++..||+|||+||+||.+ ..+.|.|.. +.....|+|.|
T Consensus 68 ~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~------D~~~~tLtI~D 141 (814)
T PTZ00130 68 HQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISA------NKEKNILSITD 141 (814)
T ss_pred eehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEE------CCCCCEEEEEE
Confidence 3355543 466777888999999999999999999964 366777763 34567999999
Q ss_pred CCCCCChhhHHhhh-hcccCCCC---------CCCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCC
Q 005166 254 DGHGMTHQDVVRMT-YFGHKQPD---------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK 323 (710)
Q Consensus 254 NG~GMt~edl~~~l-~fG~s~k~---------~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~ 323 (710)
||+|||++++.+.+ .+++|... ..+...||||||||+|||| ++++|+|.||+.+. .++.|.+ .|.
T Consensus 142 nGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~Trs~~~--~~~~W~s--~g~ 216 (814)
T PTZ00130 142 TGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNND--EQYIWES--TAD 216 (814)
T ss_pred CCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheee-ecCEEEEEEcCCCC--ceEEEEE--CCC
Confidence 99999999998865 46554321 1246799999999999999 99999999998773 4688877 455
Q ss_pred ceEEEcCccc---CCCCcEEEEEecCcc-cchhhhhHHh-HhhhCCCchhhHHH
Q 005166 324 DNLEIPIVSY---YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 372 (710)
Q Consensus 324 ~~i~VPi~~~---~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~pI~e 372 (710)
..|+|...+. ..+||+|+||++++. ++...+.++. |.+||.|..+||..
T Consensus 217 g~y~I~e~~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI~~PI~l 270 (814)
T PTZ00130 217 AKFTIYKDPRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYL 270 (814)
T ss_pred CcEEEEECCCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccCCCCEEE
Confidence 6676655332 368999999998764 6788888875 99999999999964
No 5
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=4.2e-22 Score=229.95 Aligned_cols=336 Identities=21% Similarity=0.266 Sum_probs=244.3
Q ss_pred EEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecC--CCce
Q 005166 248 MLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ--GKDN 325 (710)
Q Consensus 248 ~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~--g~~~ 325 (710)
+|++.|||.||+++++..+..|+. ....+|+||+|+|+++|++|+++.++|+....+++++++++|++ ..+.
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~------~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~s~~~~sqt~~e~~~~~~ 74 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAV------GLYGIGDYGNGLKSGSMRIGKDFILFTKKESTMSCLFLSQTFHESEADDA 74 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhcc------cccccccccCcccccccccCcccceeeccccccceeeeeccccccccccc
Confidence 478999999999999999998833 45689999999999999999999999999999999999999964 5678
Q ss_pred EEEcCcccCCCCcEEEEEecCcccchhhhhHHhHhhhCCCchh--hHHHhhccccCCCCCcEEEEEeccCC-CCceeeec
Q 005166 326 LEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKY--LIGEKAGLFQDKCTGTQIYIWNLDQW-GSNYCLEW 402 (710)
Q Consensus 326 i~VPi~~~~~~Gt~I~l~~~~~~e~~~~~~L~~I~kySpF~s~--pI~e~~~~~~~~~~GT~IiI~nL~r~-~~~~eLdF 402 (710)
.+||+++|+.++..+.. .....++++|++||+|... .+.++... .....||.+||.|+++. .+.++++|
T Consensus 75 vvvP~~t~~~~~~~~~~-------~k~~~~l~~~~c~sfwKag~~~~a~~~~~-~~~~G~~~~iivhpkflhsnatshk~ 146 (775)
T KOG1845|consen 75 VVVPCPTFNPRTREIVT-------EKFAFSLEAIYCRSFWKAGDYLLAELDVI-IGKSGGTLHIIVHPKFLHSNATSHKW 146 (775)
T ss_pred ceecccccccccccccc-------cccccccchhhhcCcccccchhcccccce-eccCCceeEEEEehhhhcCCCccccc
Confidence 89999999988776543 1245678899999999883 33332222 22234588888888875 46788888
Q ss_pred cCCCCCCCCCCcccceeecccccCCCCcccccCcchhhHHHHHhhhhcCCCeEEEEcCeEecccccccccC--cceeecc
Q 005166 403 DNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLN--KTCVETG 480 (710)
Q Consensus 403 ~~d~~~~~~f~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLYL~PrmkI~LnG~kV~~~~i~~~L~--~~~v~~~ 480 (710)
..| ..||+++..- +.++-. +.|+.++|+.|+|.|++++..|+++.+..+-. ++++.+.
T Consensus 147 a~~--------a~aeLldnal---------DEi~~~---~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~ 206 (775)
T KOG1845|consen 147 AKG--------AIAELLDNAL---------DEITNG---ATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRK 206 (775)
T ss_pred ccC--------hhhhhccccc---------cccccc---cceEEeeeecccccccceeEEeeccceeccccccCHHHHHH
Confidence 766 4788877541 223322 34599999999999999999999887544321 1221110
Q ss_pred ----------cccceeEEEEEcccccccccccceEEEEEcCeeeeeeeeecccccCCCCCceEEEEEecCcccccCCCcc
Q 005166 481 ----------IIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLV 550 (710)
Q Consensus 481 ----------~~~~~~V~it~G~~~~e~~~~~~Gi~vY~nnRLIk~~~kVg~q~~~~~~grGVIGVve~~~l~~~~~~~~ 550 (710)
+...+..+...||.... ...|..+|+-+|. +..++.++.+.||++..+||..
T Consensus 207 ~m~l~~~~k~e~~~tv~q~~~gfktst---~rlGa~~i~~~R~---------~~~~~~kstqsiglls~tfL~~------ 268 (775)
T KOG1845|consen 207 CMSLGYSSKKEANSTVGQYGNGFKTST---MRLGADAIVFSRC---------ESRRGLKSTQSIGLLSYTFLRK------ 268 (775)
T ss_pred HHHhhhhhhhhhhhhhhhhccccccch---hhhccceeEeehh---------hhhccCCcceeEEEEEEeeecc------
Confidence 11112334456666532 2388899999987 3345678899999999998743
Q ss_pred ccccCccCccCchHHHHHHHHHHHHHHHHHhhccccccccc--ccCCCCCCCceeeCccchhhccCCCCCCCCCCCCCce
Q 005166 551 WVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVK--DGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWF 628 (710)
Q Consensus 551 ~pthnKQdFe~t~~y~~L~~~L~e~~~eYW~~~~~~~~~~~--~~~~~~~~~~WVQCd~C~KWR~Lp~~~~~~~lp~~W~ 628 (710)
|+ |+||..+- +|.+...+.-.++|.. +-+.+ +.....+.... ..|+||+..+...+ .++..|+
T Consensus 269 --t~-~~d~iv~~---~~i~~~~e~~~~~~~~----i~~~s~~~~~~n~~i~~~---~~~L~w~p~~~~~~--~l~q~~v 333 (775)
T KOG1845|consen 269 --TG-KRDFIVPM---RLIKMDYEKSDQLWQG----ILYKSGVDWAVNLEIEVT---ERFLKWSPYSHLLD--LLGQNSV 333 (775)
T ss_pred --cc-CCceeEec---chhhhhhhcccccccc----eeeccccccceeeeeHHH---HHHhhcCccccHHH--Hhhhhhh
Confidence 78 99998777 8888888888888865 22211 00001111001 17999999999875 6889999
Q ss_pred ecCCC--CCCCCCCCcccccCCce
Q 005166 629 CYMKP--FEGLCDLPEQKVDAGVV 650 (710)
Q Consensus 629 C~~n~--~~~sC~~pEe~~~~~~~ 650 (710)
|..++ .+..|.++..+....++
T Consensus 334 ~~~~~~~ef~~~~~~~~~~g~~~I 357 (775)
T KOG1845|consen 334 QYSKDFPEFGHQFNIMNKPGTDVI 357 (775)
T ss_pred hhccccchhcchhhhccCCCceee
Confidence 99997 48999999988887776
No 6
>PRK14083 HSP90 family protein; Provisional
Probab=99.84 E-value=1.4e-19 Score=208.14 Aligned_cols=298 Identities=15% Similarity=0.150 Sum_probs=192.2
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccCCC----------ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhh
Q 005166 198 SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 267 (710)
Q Consensus 198 ~~L~~lst~~~~~~~~AIaELIDNS~DA~A~----------~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l 267 (710)
..|+.++.+.|+++..+|+|||+||+||++. .|.|.+. +.+...|+|.|||+||+.+++.+.+
T Consensus 11 ~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-------d~~~~~l~I~DnGiGmt~eel~~~l 83 (601)
T PRK14083 11 GVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELT-------DAGGGTLIVEDNGIGLTEEEVHEFL 83 (601)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-------cCCCcEEEEEeCCCCCCHHHHHHHH
Confidence 4567778888899999999999999999764 4555541 1246799999999999999999864
Q ss_pred -hcccCCCCC-----CCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcCc--ccCCCCcE
Q 005166 268 -YFGHKQPDA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV--SYYRKGQF 339 (710)
Q Consensus 268 -~fG~s~k~~-----~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~--~~~~~Gt~ 339 (710)
.+|.|.+.. .+...||+||+||++++| +|+++.|.||+.+. ..++.|.+..+ ..+.+... .-..+||+
T Consensus 84 ~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~-vad~v~V~Tr~~~~-~~~~~W~~~~~--g~y~i~~~~~~~~~~GT~ 159 (601)
T PRK14083 84 ATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL-VADEIVVVSRSAKD-GPAVEWRGKAD--GTYSVRKLETERAEPGTT 159 (601)
T ss_pred hhhccchhhhhhhcccccccccccccceEEEEE-ecCEEEEEeccCCC-CceEEEEECCC--CceEEEeCCCCCCCCCCE
Confidence 688776632 135789999999988887 99999999999752 56788877433 35555432 33458999
Q ss_pred EEEEecCcc-cchhhhhHH-hHhhhCCCchhhHHHhhccccCCCCCcEEEEEeccCCCCceeeeccCCCCCCCCCCcccc
Q 005166 340 MELDTVVQS-EATAKYNLK-SIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDI 417 (710)
Q Consensus 340 I~l~~~~~~-e~~~~~~L~-~I~kySpF~s~pI~e~~~~~~~~~~GT~IiI~nL~r~~~~~eLdF~~d~~~~~~f~~~DI 417 (710)
|+++++++. ++...+.++ +|.+||.|..+||... |+...|- . ...-|..+ +.+|
T Consensus 160 I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~---------~~~~~iN---~----~~~lW~~~--------~~ei 215 (601)
T PRK14083 160 VYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVE---------GEKGGVN---E----TPPPWTRD--------YPDP 215 (601)
T ss_pred EEEEecCchhhhccHHHHHHHHHHHhccCCCCcccC---------Cceeeec---C----CCCCccCC--------cccc
Confidence 999998653 566667775 4999999999988531 1111110 0 00011110 1122
Q ss_pred eeecccccCCCCcccccCcchhhHHHHHhhhhc-CCCeEEEEcCeEecccccccccCcceeecccccceeEEEEEccccc
Q 005166 418 LIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFL-VPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQL 496 (710)
Q Consensus 418 ~i~~~~~~~~~~q~~~~~~~~ySLRaYlsiLYL-~PrmkI~LnG~kV~~~~i~~~L~~~~v~~~~~~~~~V~it~G~~~~ 496 (710)
. ..+.-..+|..-+|= +|-+.|.++-.- . .. ..+-..++-...
T Consensus 216 t-----------------~~~eey~~Fyk~~~~~~Pl~~ih~~~e~---~-~~---------------~~~Ly~iP~~~~ 259 (601)
T PRK14083 216 E-----------------TRREALLAYGEELLGFTPLDVIPLDVPS---G-GL---------------EGVAYVLPYAVS 259 (601)
T ss_pred C-----------------ccHHHHHHHHHHhcCCCchheeeecccc---h-hh---------------eEEEEecCCCCC
Confidence 0 011223455555553 565666655221 0 00 111111222111
Q ss_pred ccccccceEEEEEcCeeeeee-eeecccccCCCCCceEEEEEecCcccccCCCccccccCccCccCchHHHHHHHHHHHH
Q 005166 497 EWEQMNCGIFLYWHGRLIEAY-KRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKV 575 (710)
Q Consensus 497 e~~~~~~Gi~vY~nnRLIk~~-~kVg~q~~~~~~grGVIGVve~~~l~~~~~~~~~pthnKQdFe~t~~y~~L~~~L~e~ 575 (710)
. ....|+-+|+++=||..- .-+-|. .-+=|=|||+++.| | ++-+...+.+...++++.+.|.++
T Consensus 260 ~--~~~~~v~LY~~rVfI~d~~~~lLP~-----wl~FvrGVVDS~DL--p------LNvSRE~LQ~~~~l~~ir~~i~kk 324 (601)
T PRK14083 260 P--AARRKHRVYLKRMLLSEEAENLLPD-----WAFFVRCVVNTDEL--R------PTASREALYEDDALAAVREELGEA 324 (601)
T ss_pred c--cccCceEEEeeeeEeecchhhhhHH-----HHHHheeeeecCCC--C------CccCHHHHccCHHHHHHHHHHHHH
Confidence 1 134699999999999643 224443 33455599999986 2 356677788888889998888888
Q ss_pred HHHHHh
Q 005166 576 ADEYWD 581 (710)
Q Consensus 576 ~~eYW~ 581 (710)
+.++..
T Consensus 325 i~~~L~ 330 (601)
T PRK14083 325 IRKWLI 330 (601)
T ss_pred HHHHHH
Confidence 765543
No 7
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.82 E-value=9.1e-20 Score=211.96 Aligned_cols=164 Identities=23% Similarity=0.301 Sum_probs=128.1
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeeecccCCCCcCEEEEEeCCCCCChh
Q 005166 198 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 261 (710)
Q Consensus 198 ~~L~~lst~~~~~~~~AIaELIDNS~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 261 (710)
+.|+.++.+.|+++..+|+|||+||.||.. ..+.|.|.. +.....|+|.|||+||+.+
T Consensus 13 ~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~------d~~~~~L~I~DnGiGMt~e 86 (701)
T PTZ00272 13 QLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVP------DKENKTLTVEDNGIGMTKA 86 (701)
T ss_pred HHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEE------cCCCCEEEEEECCCCCCHH
Confidence 456667888889999999999999999942 245666653 2346789999999999999
Q ss_pred hHHhhhh-cccCCC--------CCCCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcCcc
Q 005166 262 DVVRMTY-FGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS 332 (710)
Q Consensus 262 dl~~~l~-fG~s~k--------~~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~ 332 (710)
|+.+.|+ ++.|.. ...+...|||||+||+|++| +|++|.|.||+.+. .++.|.+ .+...|+|....
T Consensus 87 dl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fm-vad~V~V~Srs~~~--~~~~W~s--~~~g~y~i~~~~ 161 (701)
T PTZ00272 87 DLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYL-VADRVTVTSKNNSD--ESYVWES--SAGGTFTITSTP 161 (701)
T ss_pred HHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEE-eccEEEEEEecCCC--ceEEEEE--CCCCcEEEEeCC
Confidence 9988764 555422 12346799999999999998 99999999998764 5889987 455567664332
Q ss_pred -c-CCCCcEEEEEecCcc-cchhhhhHHh-HhhhCCCchhhHHH
Q 005166 333 -Y-YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 372 (710)
Q Consensus 333 -~-~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~pI~e 372 (710)
. ..+||+|+|+++++. ++...+.++. |.+||.|..+||..
T Consensus 162 ~~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l 205 (701)
T PTZ00272 162 ESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIEL 205 (701)
T ss_pred CCCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEE
Confidence 2 258999999998765 6778888875 99999999999963
No 8
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.1e-17 Score=186.87 Aligned_cols=164 Identities=27% Similarity=0.362 Sum_probs=129.9
Q ss_pred HHHHhhccccCCHHHHHHHHHhcccccC--------------CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHH
Q 005166 199 YLQTLGQAHSGWIFGAIAELVDNSRDAK--------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV 264 (710)
Q Consensus 199 ~L~~lst~~~~~~~~AIaELIDNS~DA~--------------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~ 264 (710)
.+..+..+.|+.-..+++|||.||.||. ...+.|.|.. +.....|+|.|.|+|||++||.
T Consensus 46 Lm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~------nk~~~tlti~DtGIGMTk~dLv 119 (656)
T KOG0019|consen 46 LMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKALPELEIRIIT------NKDKRTITIQDTGIGMTKEDLV 119 (656)
T ss_pred HHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCccccccceeEEecc------CCCcceEEEEecCCCcCHHHHH
Confidence 3344455666777899999999999993 2466677653 4567899999999999999999
Q ss_pred hhhh-ccc--------CCC-CCCCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcCcccC
Q 005166 265 RMTY-FGH--------KQP-DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYY 334 (710)
Q Consensus 265 ~~l~-fG~--------s~k-~~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~~~ 334 (710)
++++ +.. ..+ ..++..+|||||+|||+|++ ++++|.|+||+.+.. ++.|.+ .+..+++|-..+-.
T Consensus 120 nnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~e--~y~Wes--~~~gs~~v~~~~~~ 194 (656)
T KOG0019|consen 120 NNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPADE--GLQWTS--NGRGSYEIAEASGL 194 (656)
T ss_pred hhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhh-hhheeEEeeccCCCc--ceeeec--CCCCceEEeeccCc
Confidence 9875 322 223 34567899999999999999 999999999999875 777876 45566777655556
Q ss_pred CCCcEEEEEecC-cccchhhhhHHh-HhhhCCCchhhHHHh
Q 005166 335 RKGQFMELDTVV-QSEATAKYNLKS-IKEFSPFNKYLIGEK 373 (710)
Q Consensus 335 ~~Gt~I~l~~~~-~~e~~~~~~L~~-I~kySpF~s~pI~e~ 373 (710)
.+||.|.+++++ +.++.++..++. |.|||-|.++||...
T Consensus 195 ~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~ 235 (656)
T KOG0019|consen 195 RTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLN 235 (656)
T ss_pred cccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhh
Confidence 789999999997 457888888875 999999999999754
No 9
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5e-17 Score=177.00 Aligned_cols=158 Identities=23% Similarity=0.333 Sum_probs=120.6
Q ss_pred hccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhh
Q 005166 204 GQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 267 (710)
Q Consensus 204 st~~~~~~~~AIaELIDNS~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l 267 (710)
-.+.|.+-..+|+|||+||.||-. ..+.|.|.. +..+..|.|.|.|+||++++|.+++
T Consensus 89 INSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~------Dke~klLhi~DtGiGMT~edLi~NL 162 (785)
T KOG0020|consen 89 INSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKA------DKEKKLLHITDTGIGMTREDLIKNL 162 (785)
T ss_pred HHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEee------chhhCeeeEecccCCccHHHHHHhh
Confidence 445567778999999999999942 456666653 4567899999999999999999987
Q ss_pred h-cccCCC--------CCC-----CCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcCccc
Q 005166 268 Y-FGHKQP--------DAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY 333 (710)
Q Consensus 268 ~-fG~s~k--------~~~-----d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~~ 333 (710)
+ +..|.. ... ....|||||+|||+|++ +++.|.|+||+++. ..++|.+ ...+|.|...+|
T Consensus 163 GTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfL-VAD~vvVtsKhNdD--~QyiWES---dan~FsvseDpr 236 (785)
T KOG0020|consen 163 GTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFL-VADRVVVTSKHNDD--SQYIWES---DANSFSVSEDPR 236 (785)
T ss_pred hhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhh-hcceEEEEeccCCc--cceeeec---cCcceeeecCCC
Confidence 5 322211 111 24789999999999998 99999999999986 3456665 233777765555
Q ss_pred C---CCCcEEEEEecCcc-cchhhhhHHh-HhhhCCCchhhHHHh
Q 005166 334 Y---RKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEK 373 (710)
Q Consensus 334 ~---~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~pI~e~ 373 (710)
. .+||.|+|+++++. ++++...++. |.+||.|+.+||..+
T Consensus 237 g~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lW 281 (785)
T KOG0020|consen 237 GNTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLW 281 (785)
T ss_pred CCcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeee
Confidence 4 58999999999764 7788888865 999999999988654
No 10
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.68 E-value=1.2e-17 Score=158.58 Aligned_cols=97 Identities=34% Similarity=0.511 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCC-CCCCcccccCcee
Q 005166 211 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA-DDPNRIGRFGVGF 289 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~-~d~~~IG~fGiGf 289 (710)
+..||+|||+||+||+|++|.|.|... ..+...|.|.|||.||+.++|..++.+|.+.+.. .+...+|+||+|+
T Consensus 3 ~~~al~ElI~Ns~DA~a~~I~I~i~~~-----~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~ 77 (137)
T PF13589_consen 3 PEDALRELIDNSIDAGATNIKISIDED-----KKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGL 77 (137)
T ss_dssp CTHHHHHHHHHHHHHHHHHEEEEEEEE-----TTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGC
T ss_pred HHHHHHHHHHHHHHccCCEEEEEEEcC-----CCCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEH
Confidence 478999999999999999999999852 1356899999999999999999998998887641 2367899999999
Q ss_pred eeeccccCceEEEEEeeCCCCce
Q 005166 290 KTGAMRLGKDALVLTQTADSRSI 312 (710)
Q Consensus 290 KsA~m~lg~~v~V~Sk~~~~~s~ 312 (710)
|.|++.+|+.+.|+|++.+....
T Consensus 78 k~A~~~~~~~~~v~S~~~~~~~~ 100 (137)
T PF13589_consen 78 KLAIFSLGDRVEVISKTNGESFT 100 (137)
T ss_dssp GGGGGGTEEEEEEEEESTTSSSE
T ss_pred HHHHHHhcCEEEEEEEECCCCcE
Confidence 99999999999999999987553
No 11
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=99.57 E-value=4e-16 Score=124.25 Aligned_cols=45 Identities=44% Similarity=1.005 Sum_probs=31.3
Q ss_pred CceeeCccchhhccCCCCCCC--CCCCCCceecCCCC--CCCCCCCccc
Q 005166 600 QEWVQCNKCRKWRMLDPGFDT--KSLPVEWFCYMKPF--EGLCDLPEQK 644 (710)
Q Consensus 600 ~~WVQCd~C~KWR~Lp~~~~~--~~lp~~W~C~~n~~--~~sC~~pEe~ 644 (710)
+.|||||.|+|||+||.+++. ..+|+.|+|+||++ +++|++|||.
T Consensus 1 ~~WVQCd~C~KWR~lp~~~~~~~~~~~d~W~C~~n~~~~~~sC~~pee~ 49 (50)
T PF07496_consen 1 DYWVQCDSCLKWRRLPEEVDPIREELPDPWYCSMNPDPPFNSCDAPEEI 49 (50)
T ss_dssp -EEEE-TTT--EEEE-CCHHCTSCCSSTT--GGGSS-CCC-STTS--SS
T ss_pred CeEEECCCCCceeeCChhhCcccccCCCeEEcCCCCCCCCCCCCCcccC
Confidence 479999999999999999876 78999999999985 6999999985
No 12
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.44 E-value=8.8e-12 Score=145.16 Aligned_cols=140 Identities=20% Similarity=0.237 Sum_probs=98.3
Q ss_pred ceecCCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhc
Q 005166 191 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYF 269 (710)
Q Consensus 191 ~~~~v~p~~L~~l-st~~~~~~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~f 269 (710)
.|..+++..++.+ |...+.+|..+|+|||+||+||||+.|.|.+. ..+...|+|.|||.||+.+++..++..
T Consensus 2 ~I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~-------~~g~~~i~V~DnG~Gi~~~~~~~~~~~ 74 (617)
T PRK00095 2 PIQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIE-------EGGLKLIRVRDNGCGISKEDLALALAR 74 (617)
T ss_pred CceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEE-------eCCeEEEEEEEcCCCCCHHHHHHHhhc
Confidence 4778999999999 55667899999999999999999999999996 245678999999999999999988765
Q ss_pred ccCCCCCC--C---CCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcCcccCCCCcEEEEE
Q 005166 270 GHKQPDAD--D---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 343 (710)
Q Consensus 270 G~s~k~~~--d---~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~~~~~Gt~I~l~ 343 (710)
..+.|-.. + ....|..|.|+.+.+ .+ .+++|.||+.+.. .|+ ...|..|.-.-.-|. -...||+|++.
T Consensus 75 ~~tsKi~~~~dl~~~~t~GfrGeAL~sI~-~v-s~l~i~s~~~~~~-~~~-~~~~~~G~~~~~~~~--~~~~GT~V~v~ 147 (617)
T PRK00095 75 HATSKIASLDDLEAIRTLGFRGEALPSIA-SV-SRLTLTSRTADAA-EGW-QIVYEGGEIVEVKPA--AHPVGTTIEVR 147 (617)
T ss_pred cCCCCCCChhHhhccccCCcchhHHHhhh-hc-eEEEEEEecCCCC-ceE-EEEecCCcCcceecc--cCCCCCEEEec
Confidence 44444321 2 245666666663333 34 4899999997642 233 233544421111111 12479998874
No 13
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.35 E-value=2.7e-12 Score=149.52 Aligned_cols=140 Identities=21% Similarity=0.278 Sum_probs=100.2
Q ss_pred eecCCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcc
Q 005166 192 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 270 (710)
Q Consensus 192 ~~~v~p~~L~~l-st~~~~~~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG 270 (710)
|..+++...+.+ |.+.+..|..+++|||+||+||||++|+|.++ .+|...|.|.|||+||+++|+.-++.-.
T Consensus 4 Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve-------~gG~~~I~V~DNG~Gi~~~Dl~la~~rH 76 (638)
T COG0323 4 IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVE-------GGGLKLIRVRDNGSGIDKEDLPLALLRH 76 (638)
T ss_pred ceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEc-------cCCccEEEEEECCCCCCHHHHHHHHhhh
Confidence 788999999999 55667899999999999999999999999998 5678889999999999999998876533
Q ss_pred cCCC--CCCCCCcccccCceeeeec---cccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcCcccCCCCcEEEEE
Q 005166 271 HKQP--DADDPNRIGRFGVGFKTGA---MRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 343 (710)
Q Consensus 271 ~s~k--~~~d~~~IG~fGiGfKsA~---m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~~~~~Gt~I~l~ 343 (710)
.++| ...|...|-.| ||..-+ ++-..+++|+||+.+. .. .|+.+.+|..-.+-..+.-...||+|++.
T Consensus 77 aTSKI~~~~DL~~I~Tl--GFRGEAL~SIasVsrlti~Srt~~~-~~--~~~~~~~g~~~~~~~~p~a~~~GTtVeV~ 149 (638)
T COG0323 77 ATSKIASLEDLFRIRTL--GFRGEALASIASVSRLTITSRTAEA-SE--GTQIYAEGGGMEVTVKPAAHPVGTTVEVR 149 (638)
T ss_pred ccccCCchhHHHHhhcc--CccHHHHHHHHhhheeEEEeecCCc-Cc--eEEEEecCCcccccccCCCCCCCCEEEeh
Confidence 3333 23355566655 898643 4556899999995543 22 33333343322211112233359998763
No 14
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.34 E-value=4.9e-12 Score=135.74 Aligned_cols=140 Identities=19% Similarity=0.253 Sum_probs=97.8
Q ss_pred ceecCCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhc
Q 005166 191 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYF 269 (710)
Q Consensus 191 ~~~~v~p~~L~~l-st~~~~~~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~f 269 (710)
.|.++++...+.+ |.+.+.++..||.|||+||+||+|+.|.|.+.. .+...|.|.|||.||+.+++..++..
T Consensus 2 ~I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~~ 74 (312)
T TIGR00585 2 TIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEE-------GGLKLIEVSDNGSGIDKEDLPLACER 74 (312)
T ss_pred cCeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCEEEEEEEecCCCCCHHHHHHHhhC
Confidence 4678999999999 556668999999999999999999999888863 23446999999999999999988764
Q ss_pred ccCCCCC-----CCCCcccccCceeeeeccccCceEEEEEee-CCCCceeEEEEeecCCCceEEEcCcccCCCCcEEEEE
Q 005166 270 GHKQPDA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQT-ADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 343 (710)
Q Consensus 270 G~s~k~~-----~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~-~~~~s~~~ls~sf~~g~~~i~VPi~~~~~~Gt~I~l~ 343 (710)
+.+.|.. ......|..|.|+.+. ..++ +++|.||+ .+. ..++.+. . +|. .+.-....-...||+|++.
T Consensus 75 ~~tsk~~~~~~~~~~~~~G~rG~al~si-~~~s-~~~i~S~~~~~~-~~~~~~~-~-~g~-~~~~~~~~~~~~GTtV~v~ 148 (312)
T TIGR00585 75 HATSKIQSFEDLERIETLGFRGEALASI-SSVS-RLTITTKTSAAD-GLAWQAL-L-EGG-MIEEIKPAPRPVGTTVEVR 148 (312)
T ss_pred CCcCCCCChhHhhcccccCccchHHHHH-HhhC-cEEEEEeecCCC-cceEEEE-E-CCC-cCcccccccCCCccEEEEc
Confidence 4443321 1245678889988433 3355 89999998 443 3444443 2 222 1111112223579998874
No 15
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.05 E-value=4.8e-10 Score=123.16 Aligned_cols=134 Identities=22% Similarity=0.245 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHhcccccCC-----CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-cccCCCCCCCCCcc
Q 005166 209 GWIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRI 282 (710)
Q Consensus 209 ~~~~~AIaELIDNS~DA~A-----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~-fG~s~k~~~d~~~I 282 (710)
.++.+.++|||+||+||.. +.|.|.|+.+ +.+...+.|+|||.||+.+.+.++|+ +-+++|-....+..
T Consensus 35 RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~-----~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsR 109 (538)
T COG1389 35 RSLTTTVHELVTNSLDACEEAGILPDIKVEIERI-----GKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSR 109 (538)
T ss_pred hHHHHHHHHHHhcchhhHHhcCCCCceEEEEEec-----CCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhcc
Confidence 4678999999999999953 7888888753 45678899999999999999999885 33333332357889
Q ss_pred cccCceeeeec----cccCceEEEEEeeCCCCceeEEEEeecC-CCceEEEcCcccC----CCCcEEEEEecCc
Q 005166 283 GRFGVGFKTGA----MRLGKDALVLTQTADSRSIAFLSQSLNQ-GKDNLEIPIVSYY----RKGQFMELDTVVQ 347 (710)
Q Consensus 283 G~fGiGfKsA~----m~lg~~v~V~Sk~~~~~s~~~ls~sf~~-g~~~i~VPi~~~~----~~Gt~I~l~~~~~ 347 (710)
||+|+|.+.|. |..|+.+.|+|++.++..+..++-.... .++..+|....++ -+||.|+++++..
T Consensus 110 GqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~~~~~ 183 (538)
T COG1389 110 GQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELELKGV 183 (538)
T ss_pred ccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEEeccc
Confidence 99999997654 5779999999999987666555544332 3334444432222 3799999998754
No 16
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.98 E-value=1.3e-09 Score=122.13 Aligned_cols=142 Identities=20% Similarity=0.359 Sum_probs=106.4
Q ss_pred cceecCCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhh-
Q 005166 190 KNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT- 267 (710)
Q Consensus 190 ~~~~~v~p~~L~~l-st~~~~~~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l- 267 (710)
+-|.+++...++.+ +...+..|..||.|||.||+||+++.|.|.+. ++|-..|.|.|||.||.++||.-+.
T Consensus 6 ~~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk-------~GGLKLlQisDnG~GI~reDl~ilCe 78 (694)
T KOG1979|consen 6 RKIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVK-------DGGLKLLQISDNGSGIRREDLPILCE 78 (694)
T ss_pred hhhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEe-------cCCeEEEEEecCCCccchhhhHHHHH
Confidence 35788999999999 44666899999999999999999999999887 5678889999999999999997654
Q ss_pred hcccCCC-CCCCCCcccccCceeee---eccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcCcccCCCCcEEEEE
Q 005166 268 YFGHKQP-DADDPNRIGRFGVGFKT---GAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 343 (710)
Q Consensus 268 ~fG~s~k-~~~d~~~IG~fGiGfKs---A~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~~~~~Gt~I~l~ 343 (710)
+|.+|.- ...|...+..| ||+. |+++-..+|+|.||.++.... +-.+|.+|.-. .-|.+.--..||.|++.
T Consensus 79 RftTSKL~kFEDL~~lsTy--GFRGEALASiShVA~VtV~TK~~~~~ca--yrasY~DGkm~-~~pKpcAgk~GT~I~ve 153 (694)
T KOG1979|consen 79 RFTTSKLTKFEDLFSLSTY--GFRGEALASISHVAHVTVTTKTAEGKCA--YRASYRDGKMI-ATPKPCAGKQGTIITVE 153 (694)
T ss_pred HhhhhhcchhHHHHhhhhc--CccHHHHhhhhheeEEEEEEeecCceee--eEEEeeccccc-cCCCCccCCCceEEEeh
Confidence 5776643 23567778878 7774 666778999999999987432 23344343211 12444445578888763
No 17
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.97 E-value=1.1e-09 Score=125.35 Aligned_cols=138 Identities=18% Similarity=0.222 Sum_probs=90.6
Q ss_pred ecCCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhh-hhcc
Q 005166 193 VRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRM-TYFG 270 (710)
Q Consensus 193 ~~v~p~~L~~l-st~~~~~~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~-l~fG 270 (710)
.+++++..|.| |.+.+.++..|++|||+||+||||+.|+|.++ +.|...|.|.|||+|++..++.-+ +...
T Consensus 2 k~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~k-------dyG~d~IEV~DNG~GI~~~n~~~l~lkh~ 74 (672)
T KOG1978|consen 2 KQIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVK-------DYGSDSIEVSDNGSGISATDFEGLALKHT 74 (672)
T ss_pred CCCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecC-------CCCcceEEEecCCCCCCccchhhhhhhhh
Confidence 46788889999 55566789999999999999999999999987 457899999999999999998764 2222
Q ss_pred cC-CCCCCCCCcccccCceeeeecc-cc--CceEEEEEeeCCCCceeEEEEeecCCCceEEEcCcccCCCCcEEEE
Q 005166 271 HK-QPDADDPNRIGRFGVGFKTGAM-RL--GKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMEL 342 (710)
Q Consensus 271 ~s-~k~~~d~~~IG~fGiGfKsA~m-~l--g~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~~~~~Gt~I~l 342 (710)
++ .....|.. .-+-.||..-++ +| -.+++|.|++.. ..+|..+.--+.| .+.---+.-...||+|.+
T Consensus 75 TSKi~~f~Dl~--~l~T~GFRGEALSsLCa~~dv~I~Trt~~-~~vgt~l~~Dh~G--~I~~k~~~ar~~GTTV~v 145 (672)
T KOG1978|consen 75 TSKIVSFADLA--VLFTLGFRGEALSSLCALGDVMISTRSHS-AKVGTRLVYDHDG--HIIQKKPVARGRGTTVMV 145 (672)
T ss_pred hhcccchhhhh--hhhhhhhHHHHHHhhhhccceEEEEeecc-CccceeEEEccCC--ceeeeccccCCCCCEEEH
Confidence 22 12223333 334458875443 22 367888888873 2344333221122 222111222357888765
No 18
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.78 E-value=6.2e-08 Score=113.38 Aligned_cols=94 Identities=24% Similarity=0.315 Sum_probs=69.4
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-cccCCCCCCCCCccc
Q 005166 210 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 283 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~-fG~s~k~~~d~~~IG 283 (710)
++..+|.|||+||+||++. .|.|.+.. ......|.|.|||.||+++++.++|. |.++.+........|
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG 119 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEE------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRG 119 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEE------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCC
Confidence 4779999999999999865 56666653 22335799999999999999999985 554444222235578
Q ss_pred ccCceeeeecc----ccCceEEEEEeeCCC
Q 005166 284 RFGVGFKTGAM----RLGKDALVLTQTADS 309 (710)
Q Consensus 284 ~fGiGfKsA~m----~lg~~v~V~Sk~~~~ 309 (710)
+.|+|+.++.. .-|..+.|.|+..+.
T Consensus 120 ~rG~GLglai~~sqlt~GgpI~I~S~~~~~ 149 (795)
T PRK14868 120 QQGIGISAAVLYSQLTSGKPAKITSRTQGS 149 (795)
T ss_pred CCceehHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 89999975542 347889999987664
No 19
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.76 E-value=7.6e-08 Score=110.06 Aligned_cols=96 Identities=25% Similarity=0.393 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-cccCCCCCCCCCcccc
Q 005166 211 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 284 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~-fG~s~k~~~d~~~IG~ 284 (710)
+..+|.|||+||+||.+. .|.|.+.... .+.+...|.|.|||.||+++++..+|. |.++.+........|.
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~---~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~ 113 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRVD---EGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQ 113 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEcc---CCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCC
Confidence 578999999999999865 4666665210 012346789999999999999999875 4333332111456799
Q ss_pred cCceeeeecc----ccCceEEEEEeeCCC
Q 005166 285 FGVGFKTGAM----RLGKDALVLTQTADS 309 (710)
Q Consensus 285 fGiGfKsA~m----~lg~~v~V~Sk~~~~ 309 (710)
+|+|+..+.+ ..|..+.|.|+..+.
T Consensus 114 ~GLGLsiv~~isq~~~G~~I~V~S~~~~g 142 (535)
T PRK04184 114 QGIGISAAVLYAQMTTGKPVRVISSTGGS 142 (535)
T ss_pred CCcchHHHHHHHHHhcCCcEEEEEecCCC
Confidence 9999976532 236679999987664
No 20
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.57 E-value=2.8e-07 Score=104.43 Aligned_cols=96 Identities=25% Similarity=0.315 Sum_probs=70.0
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-cccCCCCCCCCCccc
Q 005166 210 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 283 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~-fG~s~k~~~d~~~IG 283 (710)
.+..++.|||+||+||.+. .|.|.+... ..+...|+|.|||.||+++++..++. |.++.+........|
T Consensus 28 ~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~-----g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G 102 (488)
T TIGR01052 28 SLTTVIHELVTNSLDACEEAGILPDIKVEIEKI-----GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRG 102 (488)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCC
Confidence 4679999999999999875 567766521 11234789999999999999999875 444444322355678
Q ss_pred ccCceeeeecc----ccCceEEEEEeeCCCC
Q 005166 284 RFGVGFKTGAM----RLGKDALVLTQTADSR 310 (710)
Q Consensus 284 ~fGiGfKsA~m----~lg~~v~V~Sk~~~~~ 310 (710)
.+|+|+.++.+ ..|..+.|.|+..+..
T Consensus 103 ~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~ 133 (488)
T TIGR01052 103 QQGIGISGAVLYSQMTTGKPVKVISSTGGEI 133 (488)
T ss_pred CccEehhHHHHHHHHcCCceEEEEEecCCce
Confidence 99999975433 3456699999988653
No 21
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.51 E-value=4.4e-07 Score=106.40 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHhccccc----CCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHh--------hhh-cccCCCC
Q 005166 209 GWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD 275 (710)
Q Consensus 209 ~~~~~AIaELIDNS~DA----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~--------~l~-fG~s~k~ 275 (710)
.-+...+.||||||+|+ .|+.|.|.|.. ...|+|.|||.||+.+.... +|. +..+.|-
T Consensus 36 ~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~---------dg~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf 106 (631)
T PRK05559 36 RGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA---------DGSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKF 106 (631)
T ss_pred chhhhhhhhhhccccchhhcCCCCEEEEEEeC---------CCcEEEEEcCCCCCcccccccCCcchheeeeeccccCcc
Confidence 45778999999999998 79999999872 24899999999999988776 443 2222232
Q ss_pred C--CCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcC-ccc--CCCCcEEEEEe
Q 005166 276 A--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSY--YRKGQFMELDT 344 (710)
Q Consensus 276 ~--~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi-~~~--~~~Gt~I~l~~ 344 (710)
. .-....|..|+|.+ +.-.++..++|.|++.+.. +.++|..|...-.++. ... ...||.|++..
T Consensus 107 ~~~~yk~SgGl~GvGls-~vNalS~~l~V~s~r~g~~----~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f~P 175 (631)
T PRK05559 107 SNKAYKFSGGLHGVGVS-VVNALSSRLEVEVKRDGKV----YRQRFEGGDPVGPLEVVGTAGKRKTGTRVRFWP 175 (631)
T ss_pred CCccccccCcccccchh-hhhhheeeEEEEEEeCCeE----EEEEEECCcCccCccccccccCCCCCcEEEEEE
Confidence 1 12367899999994 4445899999999987642 4556644421111111 111 45799998755
No 22
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.45 E-value=6e-07 Score=105.06 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcccc---c-CCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhh--------HHhhhh-cccCCCCC-
Q 005166 211 IFGAIAELVDNSRD---A-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPDA- 276 (710)
Q Consensus 211 ~~~AIaELIDNS~D---A-~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ed--------l~~~l~-fG~s~k~~- 276 (710)
+..+|.||||||+| | +|++|.|.|.. ...|+|.|||.||+.++ +.-+|. ...+.|-.
T Consensus 31 ~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~---------d~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~ 101 (625)
T TIGR01055 31 PNHLVQEVIDNSVDEALAGFASIIMVILHQ---------DQSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSN 101 (625)
T ss_pred cceeehhhhhcccchhhcCCCCEEEEEEeC---------CCeEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCC
Confidence 45689999999999 9 69999999872 27899999999999887 555553 22222221
Q ss_pred -CCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcC-ccc--CCCCcEEEEEe
Q 005166 277 -DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSY--YRKGQFMELDT 344 (710)
Q Consensus 277 -~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi-~~~--~~~Gt~I~l~~ 344 (710)
.-....|..|+|++ +.-.|+..++|.|++.+.. +.++|..|.....++. ... ...||+|++..
T Consensus 102 ~~~~~SgG~~GvGls-~vnalS~~l~v~~~r~g~~----~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~F~P 168 (625)
T TIGR01055 102 KNYHFSGGLHGVGIS-VVNALSKRVKIKVYRQGKL----YSIAFENGAKVTDLISAGTCGKRLTGTSVHFTP 168 (625)
T ss_pred CcceecCCCcchhHH-HHHHhcCeEEEEEEECCeE----EEEEEECCeEccccccccccCCCCCCeEEEEEE
Confidence 12357889999994 4445899999999987752 5566644422111121 122 23799988754
No 23
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.33 E-value=3.1e-06 Score=100.51 Aligned_cols=120 Identities=17% Similarity=0.183 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcccc---cC-CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChh----------hHHhhhhcccCCCCC
Q 005166 211 IFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ----------DVVRMTYFGHKQPDA 276 (710)
Q Consensus 211 ~~~AIaELIDNS~D---A~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e----------dl~~~l~fG~s~k~~ 276 (710)
+...+.||||||+| || |+.|+|.|.. ...++|.|||.||+.+ |+.-. ....+.|-.
T Consensus 38 Lhhlv~EivdNaiDE~~AG~a~~I~V~i~~---------dgsIsV~DnGrGIPvd~h~~~g~~~~Elvlt-~lhAggKfd 107 (756)
T PRK14939 38 LHHMVYEVVDNAIDEALAGHCDDITVTIHA---------DGSVSVSDNGRGIPTDIHPEEGVSAAEVIMT-VLHAGGKFD 107 (756)
T ss_pred hhhhhhHhhcccccccccCCCCEEEEEEcC---------CCeEEEEEcCCcccCCcccccCCchhhheee-eecccCCCC
Confidence 44679999999999 99 9999999872 2489999999999987 22211 111222211
Q ss_pred C--CCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEc-CcccCCCCcEEEEEec
Q 005166 277 D--DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSYYRKGQFMELDTV 345 (710)
Q Consensus 277 ~--d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VP-i~~~~~~Gt~I~l~~~ 345 (710)
+ -.-+-|..|+|.+ +.-.++..+.|.|++.+.. +.++|..|.-.-.++ +..-...||+|+....
T Consensus 108 ~~~ykvSgGlhGvG~s-vvNAlS~~l~v~v~r~gk~----~~q~f~~G~~~~~l~~~g~~~~~GT~V~F~PD 174 (756)
T PRK14939 108 QNSYKVSGGLHGVGVS-VVNALSEWLELTIRRDGKI----HEQEFEHGVPVAPLKVVGETDKTGTEVRFWPS 174 (756)
T ss_pred CCcccccCCccCccce-EeehccCeEEEEEEeCCeE----EEEEEecCccccCccccCCcCCCCcEEEEEEC
Confidence 1 1336789999994 4555999999999987752 556665443111011 1112457999887543
No 24
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.30 E-value=3.9e-06 Score=98.61 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcccc---cC-CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHH--------hhhhc-ccCCCCC-
Q 005166 211 IFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTYF-GHKQPDA- 276 (710)
Q Consensus 211 ~~~AIaELIDNS~D---A~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~--------~~l~f-G~s~k~~- 276 (710)
+...+.|||+||+| || |+.|.|.|.. ...|+|.|||.||+.+.-. .+|.. ..+.+-.
T Consensus 38 l~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~ 108 (638)
T PRK05644 38 LHHLVYEIVDNSIDEALAGYCDHIEVTINE---------DGSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGG 108 (638)
T ss_pred HHhhhHHhhhcccccccCCCCCEEEEEEeC---------CCcEEEEEeCccccCCccCCCCCCchHHheeeecccCccCC
Confidence 34578999999999 99 9999999872 2389999999999986321 12221 1122211
Q ss_pred -CCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcC-cccCCCCcEEEEEe
Q 005166 277 -DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSYYRKGQFMELDT 344 (710)
Q Consensus 277 -~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi-~~~~~~Gt~I~l~~ 344 (710)
.-....|..|+|.++. -.++..++|.|++.+. .+.++|..|.-.-.++. ..-...||+|+...
T Consensus 109 ~~yk~s~G~~G~Gls~v-nalS~~~~v~t~r~g~----~~~~~~~~G~~~~~~~~~~~~~~~GT~I~F~P 173 (638)
T PRK05644 109 GGYKVSGGLHGVGVSVV-NALSTWLEVEVKRDGK----IYYQEYERGVPVTPLEVIGETDETGTTVTFKP 173 (638)
T ss_pred CcccccCCccccchhhh-hheeceEEEEEEeCCc----EEEEEEECCeEccCccccCCcCCCCcEEEEEE
Confidence 1234789999999544 4489999999998765 23455544321101111 11235799988643
No 25
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.27 E-value=2.7e-06 Score=99.21 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=74.6
Q ss_pred HHHHHHhcccccC----CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHh--------hhh-cccCCCC--CCC
Q 005166 214 AIAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD--ADD 278 (710)
Q Consensus 214 AIaELIDNS~DA~----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~--------~l~-fG~s~k~--~~d 278 (710)
.+.||||||+||+ |+.|+|.|.. ...|+|.|||.||+.+.... ++. ...+.+- ...
T Consensus 5 ~v~ElvdNAiD~~~~g~at~I~V~i~~---------~g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~ 75 (594)
T smart00433 5 LVDEIVDNAADEALAGYMDTIKVTIDK---------DNSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAY 75 (594)
T ss_pred EEeeehhcccchhccCCCCEEEEEEeC---------CCeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCc
Confidence 4789999999997 9999999873 23899999999998644321 122 1111221 112
Q ss_pred CCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecC-CC--ceEEEcCcccCCCCcEEEEEe
Q 005166 279 PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ-GK--DNLEIPIVSYYRKGQFMELDT 344 (710)
Q Consensus 279 ~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~-g~--~~i~VPi~~~~~~Gt~I~l~~ 344 (710)
....|..|+|++ +...++..++|.|++.+.. +.++|.. |. ....+. ..-...||.|+...
T Consensus 76 k~s~G~~G~Gls-~vnalS~~l~v~~~~~g~~----~~~~~~~~G~~~~~~~~~-~~~~~~GT~V~F~P 138 (594)
T smart00433 76 KVSGGLHGVGAS-VVNALSTEFEVEVARDGKE----YKQSFSNNGKPLSEPKII-GDTKKDGTKVTFKP 138 (594)
T ss_pred cccCCcccchHH-HHHHhcCceEEEEEeCCcE----EEEEEeCCCeECccceec-CCCCCCCcEEEEEE
Confidence 457899999994 4445899999999998652 4455633 32 111111 11235799988643
No 26
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.26 E-value=4.9e-06 Score=98.14 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcccc---cC-CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHH--------hhhh-cccCCCC--
Q 005166 211 IFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTY-FGHKQPD-- 275 (710)
Q Consensus 211 ~~~AIaELIDNS~D---A~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~--------~~l~-fG~s~k~-- 275 (710)
+...+.|||+||+| || |+.|.|.|.. ...|+|.|||.||+.+.-. .++. +..+.+-
T Consensus 31 l~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~~ 101 (654)
T TIGR01059 31 LHHLVYEVVDNSIDEAMAGYCDTINVTIND---------DGSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDK 101 (654)
T ss_pred HHhhhHHhhhccccccccCCCCEEEEEEeC---------CCcEEEEEeCCCcCccccCcCCCCchHHheeeecccCccCC
Confidence 55789999999999 99 9999999872 2359999999999985211 1222 1112221
Q ss_pred CCCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceE--EEcCcccCCCCcEEEEEec
Q 005166 276 ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL--EIPIVSYYRKGQFMELDTV 345 (710)
Q Consensus 276 ~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i--~VPi~~~~~~Gt~I~l~~~ 345 (710)
.......|..|+|+++. -.+++.++|.|++++.. +.++|..|.-.- .+ ...-...||+|+....
T Consensus 102 ~~~k~s~G~~G~gl~~i-nalS~~l~v~~~~~g~~----~~~~~~~G~~~~~l~~-~~~~~~~GT~V~F~pd 167 (654)
T TIGR01059 102 DSYKVSGGLHGVGVSVV-NALSEWLEVTVFRDGKI----YRQEFERGIPLGPLEV-VGETKKTGTTVRFWPD 167 (654)
T ss_pred CcceecCCccchhHHHH-HHhcCeEEEEEEECCeE----EEEEEeCCCcccCcee-ccCCCCCCcEEEEEEC
Confidence 11245789999999544 44899999999987652 455664442111 11 1112347999886543
No 27
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=98.20 E-value=9e-07 Score=101.32 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=71.8
Q ss_pred ecCCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-cc
Q 005166 193 VRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FG 270 (710)
Q Consensus 193 ~~v~p~~L~~l-st~~~~~~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~-fG 270 (710)
..++...-+++ |...+.++..++.|||-||+||+|+.|.|.+.. ....+.|.|||.||+++|+..+-. +.
T Consensus 3 k~L~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~--------~t~sv~ViDdG~G~~rdDl~~lg~ry~ 74 (1142)
T KOG1977|consen 3 KCLSVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNM--------ETFSVQVIDDGFGMGRDDLEKLGNRYF 74 (1142)
T ss_pred cccchhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecC--------ceeEEEEEecCCCccHHHHHHHHhhhh
Confidence 34555666666 555556788999999999999999999999874 357889999999999999987642 22
Q ss_pred cCC-CCCCCCCcccccCceeeeecc---ccCceEEEEEeeCCC
Q 005166 271 HKQ-PDADDPNRIGRFGVGFKTGAM---RLGKDALVLTQTADS 309 (710)
Q Consensus 271 ~s~-k~~~d~~~IG~fGiGfKsA~m---~lg~~v~V~Sk~~~~ 309 (710)
+|. ...++....-.| ||+..++ +--..+.|.|++.+.
T Consensus 75 TSK~h~~ndl~~~~ty--GfRGeALasIsd~s~l~v~skkk~r 115 (1142)
T KOG1977|consen 75 TSKCHSVNDLENPRTY--GFRGEALASISDMSSLVVISKKKNR 115 (1142)
T ss_pred hhhceecccccccccc--ccchhhhhhhhhhhhhhhhhhhcCC
Confidence 221 112233334445 6654333 222445667766653
No 28
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.19 E-value=5.5e-06 Score=96.85 Aligned_cols=94 Identities=26% Similarity=0.284 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-cccCCCCCCCCCcccc
Q 005166 211 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 284 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~-fG~s~k~~~d~~~IG~ 284 (710)
+..++.|||+||+||++. .|.|.+... ..+...|.|.|||.||+++++..++. |-++.|........|.
T Consensus 37 L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~-----g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~ 111 (659)
T PRK14867 37 MTTIIHELVTNSLDACEEAEILPDIKVEIEKL-----GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQ 111 (659)
T ss_pred HHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCC
Confidence 348899999999999875 577776531 12234689999999999999999886 3333332222356788
Q ss_pred cCceeeeec----cccCceEEEEEeeCCC
Q 005166 285 FGVGFKTGA----MRLGKDALVLTQTADS 309 (710)
Q Consensus 285 fGiGfKsA~----m~lg~~v~V~Sk~~~~ 309 (710)
.|+|+.++. +..|..+.|.|+..+.
T Consensus 112 rG~GLa~a~~vsql~~G~pI~I~S~~g~G 140 (659)
T PRK14867 112 QGIGAAGVLLFSQITTGKPLKITTSTGDG 140 (659)
T ss_pred CcccHHHHHHHHHHhcCCcEEEEEEcCCC
Confidence 999996554 2347778999987554
No 29
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.18 E-value=1.2e-06 Score=78.96 Aligned_cols=89 Identities=20% Similarity=0.318 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCce
Q 005166 211 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiG 288 (710)
+..+|.||++||+++... .|.|.+.. ..+...|+|.|||.||+.+++..++.-+.+.+. +....+.+|+|
T Consensus 6 l~~il~~ll~Na~~~~~~~~~I~i~~~~------~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~--~~~~~~g~GlG 77 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEGGKIDITIEE------DDDHLSIEISDNGVGIPPEELEKLFEPFFTSDK--SETSISGHGLG 77 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHTSEEEEEEEE------ETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS--SSGGSSSSSHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEE------ecCeEEEEEEeccccccccccccchhhcccccc--cccccCCCChH
Confidence 568999999999999755 77777764 235778999999999999999998764333222 34556679999
Q ss_pred eeeecc---ccCceEEEEEeeC
Q 005166 289 FKTGAM---RLGKDALVLTQTA 307 (710)
Q Consensus 289 fKsA~m---~lg~~v~V~Sk~~ 307 (710)
|+.+.. .++-++.+.+...
T Consensus 78 L~~~~~~~~~~~g~l~~~~~~~ 99 (111)
T PF02518_consen 78 LYIVKQIAERHGGELTIESSEG 99 (111)
T ss_dssp HHHHHHHHHHTTEEEEEEEETT
T ss_pred HHHHHHHHHHCCCEEEEEEcCC
Confidence 975432 3566666666543
No 30
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.71 E-value=0.00015 Score=85.42 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=73.8
Q ss_pred HHHHHHHhccccc----CCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHh--------hhh-cccCCCCC--C
Q 005166 213 GAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPDA--D 277 (710)
Q Consensus 213 ~AIaELIDNS~DA----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~--------~l~-fG~s~k~~--~ 277 (710)
..+.|+||||+|. .++.|.|.|.. ...++|.|||.||+.+--.. +|. +..+.+-. .
T Consensus 37 hlv~EIvdNavDE~~ag~~~~I~V~i~~---------dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ 107 (637)
T TIGR01058 37 HLVWEIVDNSVDEVLAGYADNITVTLHK---------DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGG 107 (637)
T ss_pred eehhhhhcchhhhhhcCCCcEEEEEEcC---------CCeEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCc
Confidence 4577999999993 57899998862 35899999999998642111 121 11112211 1
Q ss_pred CCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCC-C--ceEEEcCcccCCCCcEEEEEec
Q 005166 278 DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG-K--DNLEIPIVSYYRKGQFMELDTV 345 (710)
Q Consensus 278 d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g-~--~~i~VPi~~~~~~Gt~I~l~~~ 345 (710)
-.-.-|..|+|. ++.-.|...++|.+++++. .+.++|..| . ..+.+. .....+||+|+....
T Consensus 108 ykvSGGlhGvG~-svvNAlS~~~~V~v~r~gk----~~~q~f~~Gg~~~~~l~~~-~~~~~~GT~V~F~PD 172 (637)
T TIGR01058 108 YKTAGGLHGVGA-SVVNALSSWLEVTVKRDGQ----IYQQRFENGGKIVQSLKKI-GTTKKTGTLVHFHPD 172 (637)
T ss_pred ccccCCcccccc-cccceeeceEEEEEEECCE----EEEEEEecCCcCcCCcccc-cCCCCCceEEEEEeC
Confidence 234568999999 5555689999999997774 455667543 2 111111 122357898876553
No 31
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.0002 Score=82.66 Aligned_cols=156 Identities=18% Similarity=0.176 Sum_probs=93.7
Q ss_pred HHHHHHHhccccc----CCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhh--------HHhhhh-cccCCCCCCC-
Q 005166 213 GAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPDADD- 278 (710)
Q Consensus 213 ~AIaELIDNS~DA----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ed--------l~~~l~-fG~s~k~~~d- 278 (710)
--+.|.||||+|. .|+.|.|.|. ....|+|.|||.||+-+. ++-+|. +....|-.++
T Consensus 39 Hlv~EVvDNsiDEalaG~~~~I~V~l~---------~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~ 109 (635)
T COG0187 39 HLVWEVVDNSIDEALAGYADRIDVTLH---------EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDS 109 (635)
T ss_pred eeEeEeeechHhHHhhCcCcEEEEEEc---------CCCeEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCc
Confidence 3477999999996 3788998886 257999999999998765 222232 1112221111
Q ss_pred -CCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCc--eEE-EcCcccCCCCcEEEEEecCcccchhhh
Q 005166 279 -PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLE-IPIVSYYRKGQFMELDTVVQSEATAKY 354 (710)
Q Consensus 279 -~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~--~i~-VPi~~~~~~Gt~I~l~~~~~~e~~~~~ 354 (710)
.-+=|..|+|. +..-.|...+.|.+++++. .+.+.|..|.. .+. +-.+.....||+|.....++-
T Consensus 110 YkvSGGLHGVG~-SVVNALS~~l~v~v~r~gk----~y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD~~i------ 178 (635)
T COG0187 110 YKVSGGLHGVGV-SVVNALSTWLEVEVKRDGK----IYRQRFERGVPVTPLEVIGSTDTKKTGTKVRFKPDPEI------ 178 (635)
T ss_pred cEeecCCCccce-EEEecccceEEEEEEECCE----EEEEEEeCCCcCCCceecccCCCCCCccEEEEEcChHh------
Confidence 34557889999 6777799999999999975 45566754432 222 111233456998877654321
Q ss_pred hHHhHhhhCCCchhhHHHhhccccCCCCCcEEEEEeccC
Q 005166 355 NLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 393 (710)
Q Consensus 355 ~L~~I~kySpF~s~pI~e~~~~~~~~~~GT~IiI~nL~r 393 (710)
.+-..|....|...+..+.--..|..|.+.+-+.
T Consensus 179 -----F~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~ 212 (635)
T COG0187 179 -----FGETEFDYEILKRRLRELAFLNKGVKITLTDERT 212 (635)
T ss_pred -----cCCcccCHHHHHHHHHHHhccCCCCEEEEEeccC
Confidence 1112233322333333222225788888775543
No 32
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.38 E-value=0.00016 Score=82.30 Aligned_cols=85 Identities=21% Similarity=0.307 Sum_probs=66.2
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccc
Q 005166 210 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 284 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~A-----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~ 284 (710)
...+.+.-|||||+||-+ +.|.+.+.. .++...|.|.|||+||+++....++..|.|.|. .+.
T Consensus 427 ~litIlGNLidNA~eA~~~~~~~k~I~l~i~~------~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~------~~~ 494 (537)
T COG3290 427 DLVTILGNLIDNALEALLAPEENKEIELSLSD------RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN------TGG 494 (537)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe------cCCEEEEEEeCCCCCCChHHHHHHHhcCccccC------CCC
Confidence 467899999999999976 566666663 456778899999999999999999999999874 234
Q ss_pred cCceeee---eccccCceEEEEEee
Q 005166 285 FGVGFKT---GAMRLGKDALVLTQT 306 (710)
Q Consensus 285 fGiGfKs---A~m~lg~~v~V~Sk~ 306 (710)
-|+|++. ..=++|..++|.+..
T Consensus 495 rGiGL~Lvkq~V~~~~G~I~~~s~~ 519 (537)
T COG3290 495 RGIGLYLVKQLVERLGGSIEVESEK 519 (537)
T ss_pred CchhHHHHHHHHHHcCceEEEeeCC
Confidence 4888863 233677888888853
No 33
>PLN03128 DNA topoisomerase 2; Provisional
Probab=97.38 E-value=0.00053 Score=85.04 Aligned_cols=86 Identities=22% Similarity=0.323 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcccccC-----CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHh----h--hhcc---cCCCCC
Q 005166 211 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR----M--TYFG---HKQPDA 276 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~-----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~----~--l~fG---~s~k~~ 276 (710)
+.-.+-|+|+||.|-. ++.|.|.|+. +...|+|.|||.||+-+--.. + +-|| .+.+-.
T Consensus 53 L~ki~dEIldNAvDe~~~~g~~~~I~V~i~~--------~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFd 124 (1135)
T PLN03128 53 LYKIFDEILVNAADNKQRDPSMDSLKVDIDV--------EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFD 124 (1135)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEEEEEc--------CCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccC
Confidence 4567899999999953 3788888862 247999999999998752211 0 1122 122211
Q ss_pred --CCCCcccccCceeeeeccccCceEEEEEe
Q 005166 277 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQ 305 (710)
Q Consensus 277 --~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk 305 (710)
.-...-|..|+|.+ ..-.|...+.|.++
T Consensus 125 d~~ykvSGGlhGvGas-vvNaLS~~f~Vev~ 154 (1135)
T PLN03128 125 DNEKKTTGGRNGYGAK-LANIFSTEFTVETA 154 (1135)
T ss_pred CccceeeccccCCCCe-EEEeecCeEEEEEE
Confidence 12457789999994 44558999999998
No 34
>PLN03237 DNA topoisomerase 2; Provisional
Probab=97.35 E-value=0.00069 Score=84.96 Aligned_cols=86 Identities=21% Similarity=0.361 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcccccC-----CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHh--h----hhccc---CCCCC
Q 005166 211 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--M----TYFGH---KQPDA 276 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~-----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~--~----l~fG~---s~k~~ 276 (710)
+.-.+-|+|+||.|-. ++.|.|.|.. ....|+|.|||.||+-+--.. . +-||+ +.+-.
T Consensus 78 L~kifdEIldNAvDe~~r~g~~~~I~V~I~~--------~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFd 149 (1465)
T PLN03237 78 LYKIFDEILVNAADNKQRDPKMDSLRVVIDV--------EQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYD 149 (1465)
T ss_pred hhhhHHHHhhhhHhHHhhcCCCCEEEEEEEc--------CCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCC
Confidence 4567899999999953 4788888862 356899999999998652111 0 11222 22211
Q ss_pred --CCCCcccccCceeeeeccccCceEEEEEe
Q 005166 277 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQ 305 (710)
Q Consensus 277 --~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk 305 (710)
.-...-|+.|+|.+ ..-.|...++|.++
T Consensus 150 d~~yKvSGGlhGVGas-vvNaLS~~f~Vev~ 179 (1465)
T PLN03237 150 DNEKKTTGGRNGYGAK-LTNIFSTEFVIETA 179 (1465)
T ss_pred CCcceeeccccccCcc-ccccccCeeEEEEE
Confidence 12456789999994 45558999999997
No 35
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.26 E-value=0.0007 Score=57.23 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=55.9
Q ss_pred HHHHHHHHhcccccCC---CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCce
Q 005166 212 FGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 212 ~~AIaELIDNS~DA~A---~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiG 288 (710)
..++.|||+||+++++ ..|.|.+.. ..+...+.|.|+|.||++..+...+...... ......+..|+|
T Consensus 2 ~~~~~~ll~Na~~~~~~~~~~v~i~~~~------~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~---~~~~~~~~~g~g 72 (103)
T cd00075 2 QQVLLNLLSNAIKHTPEGGGRITISVER------DGDHLEIRVEDNGPGIPEEDLERIFERFSDG---SRSRKGGGTGLG 72 (103)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---CCCCCCCccccC
Confidence 3689999999999987 455555542 2345678999999999999988876432111 112234567888
Q ss_pred eeeec---cccCceEEEEEee
Q 005166 289 FKTGA---MRLGKDALVLTQT 306 (710)
Q Consensus 289 fKsA~---m~lg~~v~V~Sk~ 306 (710)
++.+. .++|..+.+.+..
T Consensus 73 l~~~~~~~~~~~g~~~~~~~~ 93 (103)
T cd00075 73 LSIVKKLVELHGGRIEVESEP 93 (103)
T ss_pred HHHHHHHHHHcCCEEEEEeCC
Confidence 86432 2345577776544
No 36
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.20 E-value=0.00072 Score=58.12 Aligned_cols=73 Identities=18% Similarity=0.368 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCce
Q 005166 211 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiG 288 (710)
+..++.||++||+++..+ .|.|.+.. ..+...+.|.|+|.||+.+.+...+..+.+... .....+..|+|
T Consensus 6 l~~~~~~l~~n~~~~~~~~~~v~i~~~~------~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~--~~~~~~~~g~g 77 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPEGGRITVTLER------DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG--RSRKIGGTGLG 77 (111)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC--CCCCCCccccc
Confidence 567899999999999875 66666653 334578899999999999999887754433221 22334567888
Q ss_pred eee
Q 005166 289 FKT 291 (710)
Q Consensus 289 fKs 291 (710)
++.
T Consensus 78 l~~ 80 (111)
T smart00387 78 LSI 80 (111)
T ss_pred HHH
Confidence 864
No 37
>PRK10604 sensor protein RstB; Provisional
Probab=97.19 E-value=0.00086 Score=74.87 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCceee
Q 005166 211 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 290 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGfK 290 (710)
+..++..||+||+.++...|.|.+.. .++.-.|.|.|||.||+++++.+.+.-.+..... .....|.+|+|+.
T Consensus 320 l~~vl~NLl~NAik~~~~~I~I~~~~------~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~-~~~~~~g~GLGL~ 392 (433)
T PRK10604 320 MERVLDNLLNNALRYAHSRVRVSLLL------DGNQACLIVEDDGPGIPPEERERVFEPFVRLDPS-RDRATGGCGLGLA 392 (433)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEE------ECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCC-CCCCCCCccchHH
Confidence 56789999999999988888888764 2345678999999999999999988633322211 1122356799984
Q ss_pred e---eccccCceEEEEEeeC
Q 005166 291 T---GAMRLGKDALVLTQTA 307 (710)
Q Consensus 291 s---A~m~lg~~v~V~Sk~~ 307 (710)
. ..-+.|.++.|.+...
T Consensus 393 ivk~i~~~~gG~i~v~s~~~ 412 (433)
T PRK10604 393 IVHSIALAMGGSVNCDESEL 412 (433)
T ss_pred HHHHHHHHCCCEEEEEecCC
Confidence 3 2234677777776543
No 38
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=97.10 E-value=0.0014 Score=76.90 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=73.0
Q ss_pred HHHHHHHhccccc------C-CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHh--h--h-----hccc---CC
Q 005166 213 GAIAELVDNSRDA------K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--M--T-----YFGH---KQ 273 (710)
Q Consensus 213 ~AIaELIDNS~DA------~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~--~--l-----~fG~---s~ 273 (710)
-.+.|+||||+|. | ++.|+|.|. ...++|.|||.||+-+.-.. - . -|+. ..
T Consensus 48 hi~~EIldNavDe~~~~~~g~~~~I~V~i~----------dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGg 117 (602)
T PHA02569 48 KIIDEIIDNSVDEAIRTNFKFANKIDVTIK----------NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGS 117 (602)
T ss_pred eeeehhhhhhhhhhhccCCCCCcEEEEEEc----------CCEEEEEECCCcccCCcccccccccccceEEEEEeecccc
Confidence 3467999999995 2 567777764 36899999999998643211 0 1 1221 12
Q ss_pred CC-CCCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcCcccCCCCcEEEEEec
Q 005166 274 PD-ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTV 345 (710)
Q Consensus 274 k~-~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~~~~~Gt~I~l~~~ 345 (710)
+- ..-...-|..|+|. ++.-.|...+.|.++..+. .+.++|..|.....++...-..+||+|+....
T Consensus 118 kFd~~ykvSGGlhGVG~-svvNaLS~~~~V~v~~~~~----~~~q~f~~G~~~~~~~~~~~~~~GT~V~F~PD 185 (602)
T PHA02569 118 NFDDTNRVTGGMNGVGS-SLTNFFSVLFIGETCDGKN----EVTVNCSNGAENISWSTKPGKGKGTSVTFIPD 185 (602)
T ss_pred ccCCcceeeCCcCCccc-eeeeccchhhheEEEcCCE----EEEEEecCCcccCCcccCCCCCCccEEEEEEC
Confidence 21 11244678999999 5556699999998865543 25677755532222222223357898876653
No 39
>PRK10364 sensor protein ZraS; Provisional
Probab=96.95 E-value=0.002 Score=72.09 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCce
Q 005166 211 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiG 288 (710)
+..++..||+||+++.+ ..|.|.+.. ..+.-.|.|.|||.||+++.+.+++.-+++.+. +..|+|
T Consensus 349 l~~il~NLl~NA~k~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~-------~g~GlG 415 (457)
T PRK10364 349 LTQVLLNLYLNAIQAIGQHGVISVTASE------SGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA-------EGTGLG 415 (457)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEE------eCCeEEEEEEECCCCCCHHHHHHHhCccccCCC-------CCCccc
Confidence 56889999999999854 466666653 234468999999999999999999876655442 235888
Q ss_pred eeee---ccccCceEEEEEee
Q 005166 289 FKTG---AMRLGKDALVLTQT 306 (710)
Q Consensus 289 fKsA---~m~lg~~v~V~Sk~ 306 (710)
+..+ .-..|.++.+.|..
T Consensus 416 L~iv~~~v~~~gG~i~i~s~~ 436 (457)
T PRK10364 416 LAVVHNIVEQHGGTIQVASQE 436 (457)
T ss_pred HHHHHHHHHHCCCEEEEEeCC
Confidence 7532 22467777776653
No 40
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.94 E-value=0.0019 Score=71.24 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCceee
Q 005166 211 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 290 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGfK 290 (710)
+..++.+||+||+.++...|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-.++.... .....+.+|+|+.
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~-~~~~~~g~GlGL~ 426 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSV------DKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEA-RDRESGGTGLGLA 426 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEE------ECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcc-cCCCCCCcchhHH
Confidence 45689999999999988888887763 2345679999999999999998887533322211 1123356789985
Q ss_pred ee---ccccCceEEEEEee
Q 005166 291 TG---AMRLGKDALVLTQT 306 (710)
Q Consensus 291 sA---~m~lg~~v~V~Sk~ 306 (710)
.+ ....|.++.+.|..
T Consensus 427 iv~~~v~~~~G~l~~~s~~ 445 (461)
T PRK09470 427 IVENAIQQHRGWVKAEDSP 445 (461)
T ss_pred HHHHHHHHCCCEEEEEECC
Confidence 32 22456667776643
No 41
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.92 E-value=0.003 Score=76.19 Aligned_cols=119 Identities=19% Similarity=0.217 Sum_probs=75.2
Q ss_pred HHHHHHHhccccc----CCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHH--------hhhh-------cccCC
Q 005166 213 GAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTY-------FGHKQ 273 (710)
Q Consensus 213 ~AIaELIDNS~DA----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~--------~~l~-------fG~s~ 273 (710)
..+.|+||||+|. .++.|.|.|.. ...++|.|||.||+-+.-. -+|. |+...
T Consensus 132 hLv~EIlDNSVDE~laG~~~~I~V~i~~---------DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~ 202 (903)
T PTZ00109 132 QLLFEILDNSVDEYLAGECNKITVVLHK---------DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTF 202 (903)
T ss_pred EEEEEEeeccchhhccCCCcEEEEEEcC---------CCeEEEEeCCccccccccccCCCcceeEEEEEeccCccccCcc
Confidence 3467999999995 26888888862 4689999999999864321 1121 32210
Q ss_pred -------------------C---------------C--CCCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEE
Q 005166 274 -------------------P---------------D--ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQ 317 (710)
Q Consensus 274 -------------------k---------------~--~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~ 317 (710)
+ . ..=.-.-|..|+|. ++.-.|...+.|.+++.+. .+.+
T Consensus 203 ~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~-SVVNALS~~l~VeV~RdGK----~y~q 277 (903)
T PTZ00109 203 PKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGL-SVVNALSSFLKVDVFKGGK----IYSI 277 (903)
T ss_pred cccccccccccccccccccccccccccccccccccccCCcceecCcCCCcce-eeeeeccCeEEEEEEECCE----EEEE
Confidence 0 0 00024678999999 6666799999999999875 5667
Q ss_pred eecCCCc--eEEEcCcccCCCCcEEEEEec
Q 005166 318 SLNQGKD--NLEIPIVSYYRKGQFMELDTV 345 (710)
Q Consensus 318 sf~~g~~--~i~VPi~~~~~~Gt~I~l~~~ 345 (710)
+|..|.- .+.+--..-..+||+|.....
T Consensus 278 ~F~rG~~v~pLkvig~~~~~tGT~VtF~PD 307 (903)
T PTZ00109 278 ELSKGKVTKPLSVFSCPLKKRGTTIHFLPD 307 (903)
T ss_pred EeCCCcccCCccccCCcCCCCceEEEEEeC
Confidence 7765531 111111111347898876553
No 42
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.91 E-value=0.0025 Score=70.10 Aligned_cols=87 Identities=20% Similarity=0.184 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCce
Q 005166 211 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiG 288 (710)
+..++.+||+||++++. ..|.|.+.. .++...|+|.|||.||+++.+.+++.-+++.+... ....+..|+|
T Consensus 354 l~~~~~nll~Nai~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~-~~~~~g~GlG 426 (457)
T TIGR01386 354 FRRAISNLLSNALRHTPDGGTITVRIER------RSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPAR-SNSGEGTGLG 426 (457)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHhccccccCCccc-CCCCCCcccc
Confidence 56789999999999874 356666553 23456799999999999999998876334322111 1123447888
Q ss_pred eeeec---cccCceEEEEE
Q 005166 289 FKTGA---MRLGKDALVLT 304 (710)
Q Consensus 289 fKsA~---m~lg~~v~V~S 304 (710)
+..+. -+.|..+.+.+
T Consensus 427 L~i~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 427 LAIVRSIMEAHGGRASAES 445 (457)
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 75321 23566666666
No 43
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.88 E-value=0.0025 Score=70.17 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCceee
Q 005166 211 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 290 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGfK 290 (710)
+..++.+||+||+.++...|.|.+.. ..+.-.|+|.|||.||+++++.+++.-++.... ... .+.+|+|+.
T Consensus 332 l~~il~NLl~NA~k~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~--~~~-~~g~GlGL~ 402 (435)
T PRK09467 332 IKRALANLVVNAARYGNGWIKVSSGT------EGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDS--ARG-SSGTGLGLA 402 (435)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEe------cCCEEEEEEEecCCCcCHHHHHHhcCCcccCCC--CCC-CCCeehhHH
Confidence 45789999999999998888887763 234457999999999999999988764443211 111 245788874
Q ss_pred ee---ccccCceEEEEEee
Q 005166 291 TG---AMRLGKDALVLTQT 306 (710)
Q Consensus 291 sA---~m~lg~~v~V~Sk~ 306 (710)
-+ .-..|.++.+.+..
T Consensus 403 iv~~i~~~~~g~l~i~~~~ 421 (435)
T PRK09467 403 IVKRIVDQHNGKVELGNSE 421 (435)
T ss_pred HHHHHHHHCCCEEEEEECC
Confidence 22 11346666665543
No 44
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.77 E-value=0.0023 Score=68.84 Aligned_cols=87 Identities=14% Similarity=0.225 Sum_probs=60.2
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCc
Q 005166 210 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 287 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGi 287 (710)
++..++..||+||+.+.. ..|.|.+.. .++.-.|.|.|||.||+++++.+++.-++.... .-+..|+
T Consensus 247 ~l~~il~nLi~NA~k~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~Gl 315 (356)
T PRK10755 247 LLRLLLRNLVENAHRYSPEGSTITIKLSQ------EDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS-----RYGGIGL 315 (356)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC-----CCCCcCH
Confidence 456899999999999863 567776653 334568999999999999999988764332211 1245688
Q ss_pred eeeee---ccccCceEEEEEeeC
Q 005166 288 GFKTG---AMRLGKDALVLTQTA 307 (710)
Q Consensus 288 GfKsA---~m~lg~~v~V~Sk~~ 307 (710)
|++.+ .-.+|..+.+.|...
T Consensus 316 GL~i~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 316 GLSIVSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHHHHHCCCEEEEEECCC
Confidence 87532 224677777777554
No 45
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.75 E-value=0.0039 Score=68.64 Aligned_cols=86 Identities=19% Similarity=0.208 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcccccCCC------ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccc
Q 005166 211 IFGAIAELVDNSRDAKAT------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 284 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~------~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~ 284 (710)
+..+|.+|+.||+++.+. .|.|.... ..+.-.|+|.|||.||+++...++|.-.++.+.. ..+.
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~----~~~G 457 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTAL------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG----SRKH 457 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC----CCCC
Confidence 457899999999998533 24444332 3345688999999999999999988633333321 1233
Q ss_pred cCceeeee---ccccCceEEEEEee
Q 005166 285 FGVGFKTG---AMRLGKDALVLTQT 306 (710)
Q Consensus 285 fGiGfKsA---~m~lg~~v~V~Sk~ 306 (710)
-|+|+..+ .-.+|..+.|.|..
T Consensus 458 ~GlGL~i~~~iv~~~gG~i~~~s~~ 482 (494)
T TIGR02938 458 IGMGLSVAQEIVADHGGIIDLDDDY 482 (494)
T ss_pred CcccHHHHHHHHHHcCCEEEEEECC
Confidence 57887532 12467777776644
No 46
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.72 E-value=0.0024 Score=65.15 Aligned_cols=71 Identities=15% Similarity=0.282 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHhcccccC-CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCc
Q 005166 209 GWIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 287 (710)
Q Consensus 209 ~~~~~AIaELIDNS~DA~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGi 287 (710)
.++..+|..||+||++|. ...|.|.+.. ..+.-.|.|.|||.||+++.+..++..+.+.+... . ..|+
T Consensus 227 ~~l~~vl~nLi~NAi~~~~~~~i~i~~~~------~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~--~---g~Gl 295 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTPGGEITISVRQ------DDEQVTISVEDTGPGIPEEELERIFEPFFRTDKSR--S---GTGL 295 (336)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEEe------cCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCCC--C---CCCc
Confidence 356679999999999999 4777777763 12246789999999999999888876555444211 1 3567
Q ss_pred eee
Q 005166 288 GFK 290 (710)
Q Consensus 288 GfK 290 (710)
|++
T Consensus 296 GL~ 298 (336)
T COG0642 296 GLA 298 (336)
T ss_pred cHH
Confidence 764
No 47
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.66 E-value=0.0056 Score=67.46 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCceee
Q 005166 211 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 290 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGfK 290 (710)
+..+|..||+||+.+....-.|.+..... ..+.-.|+|.|||.||+++++.++|.-.++.+. ....+.+|+|+.
T Consensus 273 l~qvl~NLl~NAik~~~~~~~I~i~~~~~---~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~---~~~~~G~GLGL~ 346 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEGGTITLSMLHR---TTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR---DEGTEGYGIGLS 346 (380)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEec---CCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC---CCCCCcccccHH
Confidence 45789999999999976443444432110 223457899999999999999998863332221 112345788885
Q ss_pred ee---ccccCceEEEEEeeCC
Q 005166 291 TG---AMRLGKDALVLTQTAD 308 (710)
Q Consensus 291 sA---~m~lg~~v~V~Sk~~~ 308 (710)
.+ .-.+|.++.|.|...+
T Consensus 347 i~~~iv~~~gG~i~v~s~~~~ 367 (380)
T PRK09303 347 VCRRIVRVHYGQIWVDSEPGQ 367 (380)
T ss_pred HHHHHHHHcCCEEEEEecCCC
Confidence 32 2246777888776543
No 48
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.64 E-value=0.0052 Score=69.39 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcccccCC----CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccC
Q 005166 211 IFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFG 286 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fG 286 (710)
+..++.+|++||++|.. ..|.|.+.. ..+.-.|.|.|||.||+++++.++|.-+++.+. +..|
T Consensus 434 l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~-------~g~G 500 (542)
T PRK11086 434 LITILGNLIENALEAVGGEEGGEISVSLHY------RNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG-------SNRG 500 (542)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHhCCCccCC-------CCCc
Confidence 55789999999999842 356665543 234567899999999999999998875554442 1248
Q ss_pred ceeeee---ccccCceEEEEEe
Q 005166 287 VGFKTG---AMRLGKDALVLTQ 305 (710)
Q Consensus 287 iGfKsA---~m~lg~~v~V~Sk 305 (710)
+|+..+ .-..|..+.|.|.
T Consensus 501 lGL~iv~~iv~~~~G~i~v~s~ 522 (542)
T PRK11086 501 VGLYLVKQSVENLGGSIAVESE 522 (542)
T ss_pred CcHHHHHHHHHHcCCEEEEEeC
Confidence 887532 1235666666664
No 49
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.57 E-value=0.0081 Score=62.48 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCce
Q 005166 211 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiG 288 (710)
+..++.+||.||+++... .|.|.+.. ..+...|.|.|||.||+++.+.+++......... .....+..|+|
T Consensus 230 l~~vl~nll~Nai~~~~~~~~i~i~~~~------~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~-~~~~~~g~glG 302 (333)
T TIGR02966 230 LRSAFSNLVSNAIKYTPEGGTITVRWRR------DGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKS-RSRDTGGTGLG 302 (333)
T ss_pred HHHHHHHHHHHhheeCCCCCeEEEEEEE------cCCEEEEEEEecCCCCCHHHHhhhccCceecCcc-cccCCCCCccc
Confidence 567899999999998654 45554442 2334678999999999999999887633322110 01112335888
Q ss_pred eeeec---cccCceEEEEEeeC
Q 005166 289 FKTGA---MRLGKDALVLTQTA 307 (710)
Q Consensus 289 fKsA~---m~lg~~v~V~Sk~~ 307 (710)
++.+- -..|.++.+.|...
T Consensus 303 L~~~~~~~~~~gG~i~~~s~~~ 324 (333)
T TIGR02966 303 LAIVKHVLSRHHARLEIESELG 324 (333)
T ss_pred HHHHHHHHHHCCCEEEEEecCC
Confidence 85422 23677777777543
No 50
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.52 E-value=0.0047 Score=70.42 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcccccC------CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccc
Q 005166 211 IFGAIAELVDNSRDAK------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 284 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~ 284 (710)
+...+.+||+||++|. ...|.|.+.. ..+.-.|.|.|||.||++++..++|..|++.+.. ..|.
T Consensus 433 l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~----~~~g 502 (545)
T PRK15053 433 FAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD----EPGE 502 (545)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC----CCCC
Confidence 4567899999999983 3556666653 2345678999999999999999998766665421 1234
Q ss_pred cCceeeeec---cccCceEEEEEe
Q 005166 285 FGVGFKTGA---MRLGKDALVLTQ 305 (710)
Q Consensus 285 fGiGfKsA~---m~lg~~v~V~Sk 305 (710)
.|+|+..+- -..|..+.|.|.
T Consensus 503 ~GlGL~ivk~iv~~~~G~i~v~s~ 526 (545)
T PRK15053 503 HGIGLYLIASYVTRCGGVITLEDN 526 (545)
T ss_pred ceeCHHHHHHHHHHcCCEEEEEEC
Confidence 588885321 235566666654
No 51
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.47 E-value=0.008 Score=66.80 Aligned_cols=90 Identities=17% Similarity=0.198 Sum_probs=58.0
Q ss_pred CHHHHHHHHHhcccccCCC--ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCc
Q 005166 210 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 287 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~A~--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGi 287 (710)
.+..++..||+||+++... .|.|.+.. ..+.-.|+|.|||.||+++++.+++.-.++.+.. .....|..|+
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~GL 389 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQR------VPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKA-RSRQTGGSGL 389 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHhccCcccccCC-CCCCCCCCch
Confidence 3568899999999999654 35554432 2345679999999999999999987633322211 1122345688
Q ss_pred eeeee---ccccCceEEEEEee
Q 005166 288 GFKTG---AMRLGKDALVLTQT 306 (710)
Q Consensus 288 GfKsA---~m~lg~~v~V~Sk~ 306 (710)
|+..+ .-..|.++.+.|..
T Consensus 390 GL~ivk~iv~~~gG~i~i~s~~ 411 (430)
T PRK11006 390 GLAIVKHALSHHDSRLEIESEV 411 (430)
T ss_pred HHHHHHHHHHHCCCEEEEEecC
Confidence 87532 22456777776654
No 52
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.44 E-value=0.014 Score=73.89 Aligned_cols=122 Identities=19% Similarity=0.245 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcccccC--------CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHh--h----hhccc---CC
Q 005166 211 IFGAIAELVDNSRDAK--------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--M----TYFGH---KQ 273 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~--------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~--~----l~fG~---s~ 273 (710)
+.-.+-|+|+||+|-. ++.|.|.|+. +...|+|.|||.||+-+.-.. + +-||+ +.
T Consensus 58 L~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~--------d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGg 129 (1388)
T PTZ00108 58 LYKIFDEILVNAADNKARDKGGHRMTYIKVTIDE--------ENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSS 129 (1388)
T ss_pred hhhhHHHHhhhhhhhhcccCCCCCccEEEEEEec--------cCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccc
Confidence 4567899999999952 4788888863 346899999999997643211 0 11322 22
Q ss_pred CCC--CCCCcccccCceeeeeccccCceEEEEEeeC--CCCceeEEEEeecCCCceEEEcCc-cc-C-CCCcEEEEEec
Q 005166 274 PDA--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTA--DSRSIAFLSQSLNQGKDNLEIPIV-SY-Y-RKGQFMELDTV 345 (710)
Q Consensus 274 k~~--~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~--~~~s~~~ls~sf~~g~~~i~VPi~-~~-~-~~Gt~I~l~~~ 345 (710)
+-. .....-|+.|+|.+ ..-.+...+.|.++.. +. .+.++|..|-....-|.. .. . .+||.|+....
T Consensus 130 kfdd~~yKvSGGlhGVGas-vvNalS~~f~Vev~r~~~gk----~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF~PD 203 (1388)
T PTZ00108 130 NYDDTEKRVTGGRNGFGAK-LTNIFSTKFTVECVDSKSGK----KFKMTWTDNMSKKSEPRITSYDGKKDYTKVTFYPD 203 (1388)
T ss_pred cCCCCceeeecccccCCcc-ccccccceEEEEEEECCCCC----EEEEEecCCCcCCCCCccCCCCCCCCceEEEEEeC
Confidence 211 12457899999994 4555999999999988 43 455666544211112221 22 2 47898876553
No 53
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.37 E-value=0.0075 Score=66.94 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCce
Q 005166 211 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiG 288 (710)
+..++.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.+..+.. .....|..|+|
T Consensus 353 l~qvl~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~-~~~~~~g~GlG 425 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGSLHISAEQ------RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGS-RNRASGGSGLG 425 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCC-cCCCCCCCcHH
Confidence 457899999999998654 45565542 2345678999999999999999887533322211 12234567888
Q ss_pred eeee---ccccCceEEEEEeeC
Q 005166 289 FKTG---AMRLGKDALVLTQTA 307 (710)
Q Consensus 289 fKsA---~m~lg~~v~V~Sk~~ 307 (710)
+..+ .-+.|.++.+.+...
T Consensus 426 L~iv~~i~~~~~G~l~~~s~~~ 447 (466)
T PRK10549 426 LAICLNIVEAHNGRIIAAHSPF 447 (466)
T ss_pred HHHHHHHHHHcCCEEEEEECCC
Confidence 8532 224566777766543
No 54
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.35 E-value=0.008 Score=66.30 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=59.6
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCc
Q 005166 210 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 287 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGi 287 (710)
.+..++.+||.||+.+.. ..|.|.+.. .++...|+|.|||.||+++++.+.+.-.++.+.. ...-+..|+
T Consensus 368 ~l~~vl~nli~Na~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~--~~~~~~~Gl 439 (475)
T PRK11100 368 LLRQALGNLLDNAIDFSPEGGTITLSAEV------DGEQVALSVEDQGPGIPDYALPRIFERFYSLPRP--ANGRKSTGL 439 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC--CCCCCCcch
Confidence 467899999999999864 466666653 3355679999999999999999988644432210 111234588
Q ss_pred eeeeec---cccCceEEEEEee
Q 005166 288 GFKTGA---MRLGKDALVLTQT 306 (710)
Q Consensus 288 GfKsA~---m~lg~~v~V~Sk~ 306 (710)
|++.+- ..+|..+.+.|..
T Consensus 440 GL~i~~~~~~~~~G~i~i~s~~ 461 (475)
T PRK11100 440 GLAFVREVARLHGGEVTLRNRP 461 (475)
T ss_pred hHHHHHHHHHHCCCEEEEEEcC
Confidence 886422 2356667776643
No 55
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.22 E-value=0.0083 Score=71.14 Aligned_cols=84 Identities=19% Similarity=0.227 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhh-HHhhhhcccCCCCCCCCCcccccCc
Q 005166 211 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD-VVRMTYFGHKQPDADDPNRIGRFGV 287 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ed-l~~~l~fG~s~k~~~d~~~IG~fGi 287 (710)
...++.+||+||+++.. ..|.|.+.. .++.-.|+|.|||.||+++. ..+.+...++.+. +..|+
T Consensus 580 l~~vl~nLl~NAik~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~-------~G~GL 646 (679)
T TIGR02916 580 LERVLGHLVQNALEATPGEGRVAIRVER------ECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG-------AGMGI 646 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEE------cCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC-------CCcch
Confidence 45789999999999964 457776653 23556799999999999998 5666654443331 34588
Q ss_pred eeeee---ccccCceEEEEEeeC
Q 005166 288 GFKTG---AMRLGKDALVLTQTA 307 (710)
Q Consensus 288 GfKsA---~m~lg~~v~V~Sk~~ 307 (710)
|++.+ .-.+|.++.|.|...
T Consensus 647 GL~i~~~iv~~~gG~i~v~s~~g 669 (679)
T TIGR02916 647 GVYECRQYVEEIGGRIEVESTPG 669 (679)
T ss_pred hHHHHHHHHHHcCCEEEEEecCC
Confidence 87533 224677777777543
No 56
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.20 E-value=0.011 Score=66.76 Aligned_cols=86 Identities=17% Similarity=0.148 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeeecccCCCCc-CEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCcee
Q 005166 211 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 289 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~-~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGf 289 (710)
+..++.+||+||+.+......|.+.... ..+. ..|.|.|||.||+++++...+..+++.+. +..|+|+
T Consensus 501 l~~~~~nli~na~~~~~~~~~i~v~~~~----~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~-------~g~glGL 569 (607)
T PRK11360 501 LKQVLLNILINAVQAISARGKIRIRTWQ----YSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA-------KGTGLGL 569 (607)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEEE----cCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC-------CCCchhH
Confidence 5678999999999986544344443211 1223 78999999999999999888765443331 2347777
Q ss_pred eee---ccccCceEEEEEeeC
Q 005166 290 KTG---AMRLGKDALVLTQTA 307 (710)
Q Consensus 290 KsA---~m~lg~~v~V~Sk~~ 307 (710)
..+ .-.+|.++.+.|...
T Consensus 570 ~~~~~~~~~~~G~i~~~s~~~ 590 (607)
T PRK11360 570 ALSQRIINAHGGDIEVESEPG 590 (607)
T ss_pred HHHHHHHHHcCCEEEEEEcCC
Confidence 532 224677777777543
No 57
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.18 E-value=0.01 Score=67.82 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCceee
Q 005166 211 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 290 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGfK 290 (710)
...++..||+||+++....+.|.+.. ..+.-.|.|.|||.||+++++...+.-++.... ..+..|+|+.
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~-----~~~G~GLGL~ 447 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQ------TDEHLHIVVEDDGPGIPESKRELIFDRGQRADT-----LRPGQGLGLS 447 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCC-----CCCCcchhHH
Confidence 45799999999999988778877753 234557899999999999999888753332221 1124688885
Q ss_pred eec---cccCceEEEEEee
Q 005166 291 TGA---MRLGKDALVLTQT 306 (710)
Q Consensus 291 sA~---m~lg~~v~V~Sk~ 306 (710)
.+- -..|.++.|.|..
T Consensus 448 Ivk~iv~~~gG~i~v~s~~ 466 (485)
T PRK10815 448 VAREITEQYEGKISAGDSP 466 (485)
T ss_pred HHHHHHHHcCCEEEEEECC
Confidence 321 2356666666543
No 58
>PRK10337 sensor protein QseC; Provisional
Probab=95.91 E-value=0.015 Score=64.46 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCceee
Q 005166 211 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 290 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGfK 290 (710)
+..++.+||+||+.+....-.|.+... ...|+|.|||.||+++++.+.+.-.+..+. ...+.+|+|+.
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~--------~~~i~i~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 420 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLN--------ARNFTVRDNGPGVTPEALARIGERFYRPPG----QEATGSGLGLS 420 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEE--------eeEEEEEECCCCCCHHHHHHhcccccCCCC----CCCCccchHHH
Confidence 456889999999998765444444321 237999999999999999988753332211 12245788875
Q ss_pred ee---ccccCceEEEEEee
Q 005166 291 TG---AMRLGKDALVLTQT 306 (710)
Q Consensus 291 sA---~m~lg~~v~V~Sk~ 306 (710)
.+ .-+.|.++.+.+..
T Consensus 421 iv~~i~~~~gg~l~~~s~~ 439 (449)
T PRK10337 421 IVRRIAKLHGMNVSFGNAP 439 (449)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 32 22456677776643
No 59
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.86 E-value=0.011 Score=68.22 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcccccCC----CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-cccCC
Q 005166 211 IFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQ 273 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~-fG~s~ 273 (710)
+...+-.||.||+||-+ ..|.|.... .++.-.|+|.|||.|+.++-+.++|. |-+++
T Consensus 498 LeQVLvNLl~NALDA~~~~~~~~i~i~~~~------~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK 559 (603)
T COG4191 498 LEQVLVNLLQNALDAMAGQEDRRLSIRAQR------EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTK 559 (603)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeeEEEEEe------cCCeEEEEEccCCCCCCHHHHHhhcCCccccC
Confidence 67889999999999953 566666653 45667889999999999999999987 44443
No 60
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.72 E-value=0.024 Score=68.72 Aligned_cols=87 Identities=10% Similarity=0.170 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCcee
Q 005166 211 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 289 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGf 289 (710)
+..+|..||+||+++.. ..|.|.+.. ..+.-.|+|.|||.||+++++.+++.-.+..+. ..+..|+|+
T Consensus 514 l~~il~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~GLGL 582 (921)
T PRK15347 514 LRQILVNLLGNAVKFTETGGIRLRVKR------HEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT-----HSQGTGLGL 582 (921)
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC-----CCCCCchHH
Confidence 56789999999999853 467776653 234567899999999999999998753232221 124568887
Q ss_pred eeec---cccCceEEEEEeeCC
Q 005166 290 KTGA---MRLGKDALVLTQTAD 308 (710)
Q Consensus 290 KsA~---m~lg~~v~V~Sk~~~ 308 (710)
..+- -.+|.++.|.|....
T Consensus 583 ~i~~~~~~~~gG~i~i~s~~~~ 604 (921)
T PRK15347 583 TIASSLAKMMGGELTLFSTPGV 604 (921)
T ss_pred HHHHHHHHHcCCEEEEEecCCC
Confidence 5322 246778888776543
No 61
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.65 E-value=0.034 Score=52.10 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=48.5
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccc
Q 005166 210 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 284 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~-----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~ 284 (710)
.+..++.||+.||+..+ ...|.|.+.. ..+...|.|.|+|.||+. +.+.+....+.+. ..+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~------~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~-----~~~~ 105 (137)
T TIGR01925 39 DIKTAVSEAVTNAIIHGYEENCEGVVYISATI------EDHEVYITVRDEGIGIEN--LEEAREPLYTSKP-----ELER 105 (137)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEE------eCCEEEEEEEEcCCCcCc--hhHhhCCCcccCC-----CCCC
Confidence 35688999999999754 2456666653 234567899999999973 3344332222221 1234
Q ss_pred cCceeeeeccccCceEEEEEe
Q 005166 285 FGVGFKTGAMRLGKDALVLTQ 305 (710)
Q Consensus 285 fGiGfKsA~m~lg~~v~V~Sk 305 (710)
.|+|+.. .-+++.++.+.+.
T Consensus 106 ~GlGL~l-v~~~~~~l~~~~~ 125 (137)
T TIGR01925 106 SGMGFTV-MENFMDDVSVDSE 125 (137)
T ss_pred CcccHHH-HHHhCCcEEEEEC
Confidence 5778742 2234555555543
No 62
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.59 E-value=0.028 Score=67.40 Aligned_cols=93 Identities=14% Similarity=0.238 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCcee
Q 005166 211 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 289 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGf 289 (710)
+..++..||+||+++.. ..|.|.+... ..+.-.|+|.|||.||+++++.++|...++.+........+.-|+|+
T Consensus 399 l~qvl~NLl~NAik~~~~g~v~i~~~~~-----~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL 473 (779)
T PRK11091 399 LRQILWNLISNAVKFTQQGGVTVRVRYE-----EGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGL 473 (779)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEEc-----cCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHH
Confidence 45789999999999863 4566666531 13346789999999999999999886333332111222345567777
Q ss_pred eee---ccccCceEEEEEeeCC
Q 005166 290 KTG---AMRLGKDALVLTQTAD 308 (710)
Q Consensus 290 KsA---~m~lg~~v~V~Sk~~~ 308 (710)
..+ .-..|.++.|.|....
T Consensus 474 ~i~~~iv~~~gG~i~v~s~~g~ 495 (779)
T PRK11091 474 AVSKRLAQAMGGDITVTSEEGK 495 (779)
T ss_pred HHHHHHHHHcCCEEEEEecCCC
Confidence 422 2247888999887543
No 63
>PRK09835 sensor kinase CusS; Provisional
Probab=95.58 E-value=0.03 Score=62.33 Aligned_cols=89 Identities=11% Similarity=0.097 Sum_probs=57.8
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCc
Q 005166 210 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 287 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGi 287 (710)
.+..++.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++...+.-.+.... ......+..|+
T Consensus 375 ~l~~vl~nll~Na~~~~~~~~~I~i~~~~------~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~-~~~~~~~g~Gl 447 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPAGEAITVRCQE------VDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDP-SRQRKGEGSGI 447 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCC-CCCCCCCCcch
Confidence 366899999999999864 346666653 233457899999999999999988752222111 01112245788
Q ss_pred eeeee---ccccCceEEEEEe
Q 005166 288 GFKTG---AMRLGKDALVLTQ 305 (710)
Q Consensus 288 GfKsA---~m~lg~~v~V~Sk 305 (710)
|+..+ .-..|.++.+.|.
T Consensus 448 GL~i~~~i~~~~~g~i~~~s~ 468 (482)
T PRK09835 448 GLAIVKSIVVAHKGTVAVTSD 468 (482)
T ss_pred HHHHHHHHHHHCCCEEEEEEC
Confidence 88432 2246777777764
No 64
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=95.53 E-value=0.028 Score=59.97 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeeecc--cCCCC----cCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCccc
Q 005166 211 IFGAIAELVDNSRDAK-ATKLEISIESIYFK--KAGKD----IPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 283 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~-A~~I~I~I~~~~~~--~~~~~----~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG 283 (710)
+..++..||+||+.+. .....|.+...... ....+ ...|.|.|||.||+++.+.++|.-+++.+. +
T Consensus 238 l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~-------~ 310 (348)
T PRK11073 238 IEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE-------G 310 (348)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC-------C
Confidence 5688999999999975 33333443311000 00001 136899999999999998888753333331 2
Q ss_pred ccCceeee---eccccCceEEEEEeeC
Q 005166 284 RFGVGFKT---GAMRLGKDALVLTQTA 307 (710)
Q Consensus 284 ~fGiGfKs---A~m~lg~~v~V~Sk~~ 307 (710)
.-|+|+.. ..-..|.++.|.|...
T Consensus 311 g~GlGL~i~~~iv~~~gG~i~~~s~~~ 337 (348)
T PRK11073 311 GTGLGLSIARNLIDQHSGKIEFTSWPG 337 (348)
T ss_pred CccCCHHHHHHHHHHcCCeEEEEecCC
Confidence 24777742 2234677777776543
No 65
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=95.26 E-value=0.047 Score=65.43 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCce
Q 005166 211 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiG 288 (710)
+..++..||+||+++.. ..|.|.+.. ..+.-.|+|.|||.||+++++.+++.-..+.+.. .....+..|+|
T Consensus 598 L~~il~NLI~NAik~s~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~-~~~~~~g~GLG 670 (703)
T TIGR03785 598 IAQMLDKLVDNAREFSPEDGLIEVGLSQ------NKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQ-GAQDQPHLGLG 670 (703)
T ss_pred HHHHHHHHHHHHHHHCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCC-CCCCCCCccHH
Confidence 55789999999999854 345665542 2345679999999999999999988644432211 11122347888
Q ss_pred eeee---ccccCceEEEEEeeC
Q 005166 289 FKTG---AMRLGKDALVLTQTA 307 (710)
Q Consensus 289 fKsA---~m~lg~~v~V~Sk~~ 307 (710)
++.+ ....|.++.+.+...
T Consensus 671 L~Ivr~Iv~~~gG~I~v~s~~~ 692 (703)
T TIGR03785 671 LYIVRLIADFHQGRIQAENRQQ 692 (703)
T ss_pred HHHHHHHHHHcCCEEEEEECCC
Confidence 8643 234577777766543
No 66
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.23 E-value=0.035 Score=67.52 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeeeccc---------CCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCC
Q 005166 211 IFGAIAELVDNSRDAKA--TKLEISIESIYFKK---------AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 279 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A--~~I~I~I~~~~~~~---------~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~ 279 (710)
+..++..||+||+.+.. ..|.|.+....... ..++.-.|.|.|||.||+++++.++|.-.++.+.
T Consensus 561 L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~---- 636 (828)
T PRK13837 561 LQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA---- 636 (828)
T ss_pred HHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC----
Confidence 56889999999999843 45666665310000 0123456899999999999999998864333321
Q ss_pred CcccccCceeeee---ccccCceEEEEEeeC
Q 005166 280 NRIGRFGVGFKTG---AMRLGKDALVLTQTA 307 (710)
Q Consensus 280 ~~IG~fGiGfKsA---~m~lg~~v~V~Sk~~ 307 (710)
+..|+|+..+ .-..|.++.|.|...
T Consensus 637 ---~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 637 ---GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred ---CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 4568887532 224688888877643
No 67
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=94.82 E-value=0.062 Score=65.73 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeeecccCCCCc-CEEEEEeCCCCCChhhHHhhhh-cccCCCCCCCCCcccccCc
Q 005166 211 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGV 287 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A-~~I~I~I~~~~~~~~~~~~-~~L~I~DNG~GMt~edl~~~l~-fG~s~k~~~d~~~IG~fGi 287 (710)
+..+|..||+||+.+.. ..|.|.+.. ..+. -.|.|.|+|.||+++++.++|. |..... ....|..|+
T Consensus 580 l~~il~nLi~NAik~~~~g~i~i~~~~------~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~~g~GL 649 (968)
T TIGR02956 580 IRQVLINLVGNAIKFTDRGSVVLRVSL------NDDSSLLFEVEDTGCGIAEEEQATLFDAFTQADG----RRRSGGTGL 649 (968)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEEEE------cCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccCC----CCCCCCccH
Confidence 45789999999999854 456776653 1233 6799999999999999999875 433221 122355688
Q ss_pred eeeee---ccccCceEEEEEeeCC
Q 005166 288 GFKTG---AMRLGKDALVLTQTAD 308 (710)
Q Consensus 288 GfKsA---~m~lg~~v~V~Sk~~~ 308 (710)
|+..+ .-.+|.++.|.|....
T Consensus 650 GL~i~~~l~~~~gG~i~~~s~~~~ 673 (968)
T TIGR02956 650 GLAISQRLVEAMDGELGVESELGV 673 (968)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCC
Confidence 88532 2246888888876543
No 68
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=94.82 E-value=0.06 Score=65.56 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCcee
Q 005166 211 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 289 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGf 289 (710)
+..++..||+||+.+.. ..|.|.+.. ..+...|.|.|||.||+++++.+++.-.+... ...|..|+|+
T Consensus 562 l~qil~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-----~~~~g~GLGL 630 (914)
T PRK11466 562 IRQVITNLLSNALRFTDEGSIVLRSRT------DGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVS-----GKRGGTGLGL 630 (914)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHhchhhcCC-----CCCCCCcccH
Confidence 45789999999999853 456666542 23455789999999999999999875323221 1125578887
Q ss_pred eee---ccccCceEEEEEeeCC
Q 005166 290 KTG---AMRLGKDALVLTQTAD 308 (710)
Q Consensus 290 KsA---~m~lg~~v~V~Sk~~~ 308 (710)
..+ .-.+|.++.|.|...+
T Consensus 631 ~i~~~l~~~~gG~i~v~s~~~~ 652 (914)
T PRK11466 631 TISSRLAQAMGGELSATSTPEV 652 (914)
T ss_pred HHHHHHHHHcCCEEEEEecCCC
Confidence 432 2247888888886543
No 69
>PRK10490 sensor protein KdpD; Provisional
Probab=94.61 E-value=0.062 Score=66.22 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCce
Q 005166 211 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiG 288 (710)
+..++..||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.++|.-.++.+. ....+..|+|
T Consensus 779 L~qVL~NLL~NAik~s~~g~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~---~~~~~G~GLG 849 (895)
T PRK10490 779 FERVLINLLENAVKYAGAQAEIGIDAHV------EGERLQLDVWDNGPGIPPGQEQLIFDKFARGNK---ESAIPGVGLG 849 (895)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHhcCCCccCCC---CCCCCCccHH
Confidence 568899999999998644 45555542 234567899999999999999988863332221 1122346788
Q ss_pred eeee---ccccCceEEEEEeeC
Q 005166 289 FKTG---AMRLGKDALVLTQTA 307 (710)
Q Consensus 289 fKsA---~m~lg~~v~V~Sk~~ 307 (710)
+..+ .-..|.++.+.|...
T Consensus 850 L~Ivk~ive~hGG~I~v~s~~~ 871 (895)
T PRK10490 850 LAICRAIVEVHGGTIWAENRPE 871 (895)
T ss_pred HHHHHHHHHHcCCEEEEEECCC
Confidence 7432 123677777777543
No 70
>PRK10547 chemotaxis protein CheA; Provisional
Probab=94.54 E-value=0.077 Score=63.33 Aligned_cols=87 Identities=20% Similarity=0.324 Sum_probs=54.7
Q ss_pred HHHHHHHhcccccCC--------------CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHh-------------
Q 005166 213 GAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR------------- 265 (710)
Q Consensus 213 ~AIaELIDNS~DA~A--------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~------------- 265 (710)
.+|..||.||+|+|- ..|.|.... .++.-.|.|.|||.||+++.+.+
T Consensus 388 dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~------~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~l 461 (670)
T PRK10547 388 DPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEH------QGGNICIEVTDDGAGLNRERILAKAASQGLAVSENM 461 (670)
T ss_pred HHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccC
Confidence 446799999999862 245555542 23456789999999999987652
Q ss_pred --------hhhcccCCCCCCCCCcccccCceee---eeccccCceEEEEEeeC
Q 005166 266 --------MTYFGHKQPDADDPNRIGRFGVGFK---TGAMRLGKDALVLTQTA 307 (710)
Q Consensus 266 --------~l~fG~s~k~~~d~~~IG~fGiGfK---sA~m~lg~~v~V~Sk~~ 307 (710)
.|.-|++.+.. .......|+|+. ...-.+|..+.|.|...
T Consensus 462 s~~e~~~lIF~pgfst~~~--~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g 512 (670)
T PRK10547 462 SDEEVGMLIFAPGFSTAEQ--VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQG 512 (670)
T ss_pred CHHHHHHHhhcCCcccccc--cccCCCCchhHHHHHHHHHHcCCEEEEEecCC
Confidence 22234444321 122344688874 22335788888888653
No 71
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=94.30 E-value=0.092 Score=64.94 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-cccCCCCCCCCCcccccCce
Q 005166 211 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~-fG~s~k~~~d~~~IG~fGiG 288 (710)
+..+|..||+||+.+.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++. |-..... .....+..|+|
T Consensus 563 L~qvl~NLl~NAik~t~~G~I~I~v~~------~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~--~~~~~~GtGLG 634 (924)
T PRK10841 563 LQQVISNLLSNAIKFTDTGCIVLHVRV------DGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTG--VQRNFQGTGLG 634 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEE------eCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCC--CCCCCCCeehh
Confidence 45789999999999853 346665543 23456789999999999999999875 3221111 11122346888
Q ss_pred eeee---ccccCceEEEEEeeC
Q 005166 289 FKTG---AMRLGKDALVLTQTA 307 (710)
Q Consensus 289 fKsA---~m~lg~~v~V~Sk~~ 307 (710)
+..+ .-.+|.++.|.|...
T Consensus 635 L~I~k~lv~~~gG~I~v~S~~g 656 (924)
T PRK10841 635 LAICEKLINMMDGDISVDSEPG 656 (924)
T ss_pred HHHHHHHHHHCCCEEEEEEcCC
Confidence 7532 224688888888654
No 72
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=94.25 E-value=0.098 Score=57.80 Aligned_cols=74 Identities=23% Similarity=0.456 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcccccC----------CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCC--C
Q 005166 211 IFGAIAELVDNSRDAK----------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD--D 278 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~----------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~--d 278 (710)
+.-.+-||..||..|- -+.|.|.+.. +++...+.|.|-|+|++++++..++.|++|..... +
T Consensus 261 L~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~------gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d 334 (414)
T KOG0787|consen 261 LYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAK------GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSD 334 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEec------CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCC
Confidence 5567899999999992 2457777763 44567889999999999999999999998765321 1
Q ss_pred ---CCcccccCceee
Q 005166 279 ---PNRIGRFGVGFK 290 (710)
Q Consensus 279 ---~~~IG~fGiGfK 290 (710)
....--||-|+-
T Consensus 335 ~~~~~plaGfG~GLP 349 (414)
T KOG0787|consen 335 NNRTAPLAGFGFGLP 349 (414)
T ss_pred CCCcCcccccccCCc
Confidence 234445666653
No 73
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.17 E-value=0.11 Score=62.92 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-cccCCCCCCCCCcccccCce
Q 005166 211 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~-fG~s~k~~~d~~~IG~fGiG 288 (710)
+..+|..||+||+.+.. ..|.|.+..... ......-.|.|.|||.||+++++.+.+. |-..... .....|..|+|
T Consensus 409 l~~vl~NLl~NAik~~~~g~v~i~v~~~~~-~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~~~~g~GLG 485 (919)
T PRK11107 409 LQQIITNLVGNAIKFTESGNIDILVELRAL-SNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS--ISRRHGGTGLG 485 (919)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEEec-CCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC--CCCCCCCcchh
Confidence 45789999999999853 345555542110 0011134689999999999999998875 3222111 11234567888
Q ss_pred eeee---ccccCceEEEEEeeCC
Q 005166 289 FKTG---AMRLGKDALVLTQTAD 308 (710)
Q Consensus 289 fKsA---~m~lg~~v~V~Sk~~~ 308 (710)
+..+ .-.+|.++.|.|....
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~ 508 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNR 508 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCC
Confidence 7522 2247888888887653
No 74
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=94.08 E-value=0.075 Score=61.06 Aligned_cols=68 Identities=24% Similarity=0.319 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCcee
Q 005166 211 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 289 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGf 289 (710)
...++.|+++||+.+. +..|.|.+.. .++.-.|+|.|||.||++++ +..|+|+
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~------~~~~i~l~V~DnG~Gi~~~~--------------------~~~GLGL 464 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQ------QDERLMLVIEDDGSGLPPGS--------------------GQQGFGL 464 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------cCCEEEEEEEECCCCCCcCC--------------------CCCCCcH
Confidence 5578899999999864 4667776653 23456799999999998653 1137787
Q ss_pred eee---ccccCceEEEEE
Q 005166 290 KTG---AMRLGKDALVLT 304 (710)
Q Consensus 290 KsA---~m~lg~~v~V~S 304 (710)
..+ .-..|.++.+.|
T Consensus 465 ~ivr~iv~~~GG~i~v~S 482 (495)
T PRK11644 465 RGMRERVTALGGTLTISC 482 (495)
T ss_pred HHHHHHHHHcCCEEEEEc
Confidence 432 124677777766
No 75
>PRK03660 anti-sigma F factor; Provisional
Probab=93.80 E-value=0.2 Score=47.32 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=32.7
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEeeecccCCCCcCEEEEEeCCCCCCh
Q 005166 210 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 260 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~A-----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ 260 (710)
.+..++.||+.||+..+. ..|.|.+.. ..+...++|.|+|.||+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~------~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 39 EIKTAVSEAVTNAIIHGYENNPDGVVYIEVEI------EEEELEITVRDEGKGIED 88 (146)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------CCCEEEEEEEEccCCCCh
Confidence 356889999999997642 346666542 234567899999999975
No 76
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=93.75 E-value=0.11 Score=50.76 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh
Q 005166 211 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 268 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A-----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~ 268 (710)
...|+.|++.||+..+- ..|.|.+.. ..+...+.|.|+|.||+++.+...+.
T Consensus 43 l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~g~d~~~~~~~~~ 99 (161)
T PRK04069 43 MKIAVSEACTNAVQHAYKEDEVGEIHIRFEI------YEDRLEIVVADNGVSFDYETLKSKLG 99 (161)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------ECCEEEEEEEECCcCCChHHhccccC
Confidence 45799999999998864 245665543 24567889999999999888766554
No 77
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=93.63 E-value=0.17 Score=62.55 Aligned_cols=93 Identities=14% Similarity=0.184 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCcee
Q 005166 211 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 289 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGf 289 (710)
+..++..||+||+.+.+ ..|.|.+.... ...+.-.|.|.|+|.||+++++.+++.--.+.+.. ...-+.-|+|+
T Consensus 566 L~QVL~NLL~NAik~t~~G~I~I~v~~~~---~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~--~~~~~GtGLGL 640 (894)
T PRK10618 566 LRKILLLLLNYAITTTAYGKITLEVDQDE---SSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQG--DRYGKASGLTF 640 (894)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcc---CCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCC--CCCCCCcChhH
Confidence 45789999999999854 35666654210 01234578999999999999999987522222211 11122357776
Q ss_pred eee---ccccCceEEEEEeeCC
Q 005166 290 KTG---AMRLGKDALVLTQTAD 308 (710)
Q Consensus 290 KsA---~m~lg~~v~V~Sk~~~ 308 (710)
..+ .-.+|.++.|.|....
T Consensus 641 aI~k~Lve~~GG~I~v~S~~g~ 662 (894)
T PRK10618 641 FLCNQLCRKLGGHLTIKSREGL 662 (894)
T ss_pred HHHHHHHHHcCCEEEEEECCCC
Confidence 321 2247889999887653
No 78
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=93.53 E-value=0.11 Score=59.63 Aligned_cols=76 Identities=18% Similarity=0.402 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcccc-cCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCcee
Q 005166 211 IFGAIAELVDNSRD-AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 289 (710)
Q Consensus 211 ~~~AIaELIDNS~D-A~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGf 289 (710)
...-++|-+.||+. |.|++|+|.+.. ..+...++|+|||+|++..+ ...|.||+-.
T Consensus 482 lLqIvREAlsNa~KHa~As~i~V~~~~------~~g~~~~~VeDnG~Gi~~~~-----------------e~~gHyGL~I 538 (574)
T COG3850 482 LLQIVREALSNAIKHAQASEIKVTVSQ------NDGQVTLTVEDNGVGIDEAA-----------------EPSGHYGLNI 538 (574)
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEe------cCCeEEEEEeeCCcCCCCcc-----------------CCCCCcchHH
Confidence 45778999999997 479999999874 34788999999999997642 4567887764
Q ss_pred ee-eccccCceEEEEEeeCCC
Q 005166 290 KT-GAMRLGKDALVLTQTADS 309 (710)
Q Consensus 290 Ks-A~m~lg~~v~V~Sk~~~~ 309 (710)
-. =+-+|+..+.|..+..+.
T Consensus 539 M~ERA~~L~~~L~i~~~~~gG 559 (574)
T COG3850 539 MRERAQRLGGQLRIRRREGGG 559 (574)
T ss_pred HHHHHHHhcCeEEEeecCCCC
Confidence 11 012577888777766553
No 79
>PRK13557 histidine kinase; Provisional
Probab=93.43 E-value=0.22 Score=56.03 Aligned_cols=92 Identities=16% Similarity=0.166 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeeecc--c---------CCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCC
Q 005166 211 IFGAIAELVDNSRDAKATKLEISIESIYFK--K---------AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 279 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~~I~I~I~~~~~~--~---------~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~ 279 (710)
+..++..|+.||+++......|.+....-. . ..++.-.|.|.|||.||+++...+++...++.+.
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~---- 353 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE---- 353 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----
Confidence 457899999999998543333333211000 0 0112346899999999999999888864443332
Q ss_pred CcccccCceeee---eccccCceEEEEEeeC
Q 005166 280 NRIGRFGVGFKT---GAMRLGKDALVLTQTA 307 (710)
Q Consensus 280 ~~IG~fGiGfKs---A~m~lg~~v~V~Sk~~ 307 (710)
..+..|+|+.. ..-.+|..+.|.|...
T Consensus 354 -~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~ 383 (540)
T PRK13557 354 -EGKGTGLGLSMVYGFAKQSGGAVRIYSEVG 383 (540)
T ss_pred -CCCCCCccHHHHHHHHHHCCCEEEEEecCC
Confidence 12345778642 2234788888887653
No 80
>PRK13560 hypothetical protein; Provisional
Probab=93.26 E-value=0.15 Score=60.31 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=44.5
Q ss_pred HHHHHHHhcccccC-----CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCc
Q 005166 213 GAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 287 (710)
Q Consensus 213 ~AIaELIDNS~DA~-----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGi 287 (710)
..|.+|+.||+++. +..|.|.+... ..+.-.|+|.|||+||+++.. +. + | -|+
T Consensus 714 ~il~NLl~NAik~~~~~~~~~~i~i~~~~~-----~~~~v~i~V~D~G~GI~~~~~-----~~---~--------~-~gL 771 (807)
T PRK13560 714 LIISELLSNALKHAFPDGAAGNIKVEIREQ-----GDGMVNLCVADDGIGLPAGFD-----FR---A--------A-ETL 771 (807)
T ss_pred HHHHHHHHHHHHhhccCCCCceEEEEEEEc-----CCCEEEEEEEeCCCcCCcccc-----cc---c--------c-CCc
Confidence 47789999999973 23455555421 134567899999999988631 10 0 0 157
Q ss_pred eeeee---ccccCceEEEEEe
Q 005166 288 GFKTG---AMRLGKDALVLTQ 305 (710)
Q Consensus 288 GfKsA---~m~lg~~v~V~Sk 305 (710)
|+..+ .-..|..+.|.|.
T Consensus 772 GLai~~~iv~~~gG~I~v~S~ 792 (807)
T PRK13560 772 GLQLVCALVKQLDGEIALDSR 792 (807)
T ss_pred cHHHHHHHHHHcCCEEEEEcC
Confidence 76422 2246888888874
No 81
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=93.05 E-value=0.15 Score=49.87 Aligned_cols=85 Identities=18% Similarity=0.092 Sum_probs=52.8
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccc
Q 005166 210 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 284 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~A-----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~ 284 (710)
....|+.|++.||+..+- ..|.|.+.. ..+...+.|.|+|.|++++.+...+......... +....|
T Consensus 42 ~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~-~~~~~~- 113 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAYKEGENGEIGISFHI------YEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPI-DDLREG- 113 (159)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------eCCEEEEEEEEcccccCchhhccccCCCCCCCCc-ccCCCC-
Confidence 456899999999998852 356666653 2356778899999999988766543321111110 111223
Q ss_pred cCceeeeeccccCceEEEEE
Q 005166 285 FGVGFKTGAMRLGKDALVLT 304 (710)
Q Consensus 285 fGiGfKsA~m~lg~~v~V~S 304 (710)
|.|+...- +|.+++.+.+
T Consensus 114 -G~GL~Li~-~L~D~v~~~~ 131 (159)
T TIGR01924 114 -GLGLFLIE-TLMDEVEVYE 131 (159)
T ss_pred -ccCHHHHH-HhccEEEEEe
Confidence 77875332 4677777664
No 82
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=93.04 E-value=0.19 Score=46.13 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCccccc
Q 005166 211 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 285 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~f 285 (710)
...|+.|++.||+..+.. .|.|.+.. ..+.-.|.|.|+|.|+++........-+. .....-
T Consensus 32 ~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~------~~~~l~i~v~D~G~~~d~~~~~~~~~~~~--------~~~~~~ 97 (125)
T PF13581_consen 32 LELAVSEALTNAVEHGYPGDPDGPVDVRLEV------DPDRLRISVRDNGPGFDPEQLPQPDPWEP--------DSLREG 97 (125)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEEEE------cCCEEEEEEEECCCCCChhhccCcccccC--------CCCCCC
Confidence 568999999999998753 46665543 34567889999999999887544321110 112223
Q ss_pred CceeeeeccccCceEEE
Q 005166 286 GVGFKTGAMRLGKDALV 302 (710)
Q Consensus 286 GiGfKsA~m~lg~~v~V 302 (710)
|.|+... -++.+++.+
T Consensus 98 G~Gl~li-~~l~D~~~~ 113 (125)
T PF13581_consen 98 GRGLFLI-RSLMDEVDY 113 (125)
T ss_pred CcCHHHH-HHHHcEEEE
Confidence 6676322 246777777
No 83
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=92.86 E-value=0.14 Score=56.07 Aligned_cols=71 Identities=24% Similarity=0.376 Sum_probs=53.1
Q ss_pred CHHHHHHHHHhccccc-CCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCce
Q 005166 210 WIFGAIAELVDNSRDA-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA-~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiG 288 (710)
..+-++.|.|.|++.. +|+.+.|.+.. ..+.-.|.|.|||.|.+.+... | |.|
T Consensus 279 ~l~rivQEaltN~~rHa~A~~v~V~l~~------~~~~l~l~V~DnG~Gf~~~~~~------------------~--~~G 332 (365)
T COG4585 279 ALFRIVQEALTNAIRHAQATEVRVTLER------TDDELRLEVIDNGVGFDPDKEG------------------G--GFG 332 (365)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEEEE------cCCEEEEEEEECCcCCCccccC------------------C--Ccc
Confidence 4789999999999986 68999999985 3456889999999998765421 2 345
Q ss_pred eee---eccccCceEEEEEee
Q 005166 289 FKT---GAMRLGKDALVLTQT 306 (710)
Q Consensus 289 fKs---A~m~lg~~v~V~Sk~ 306 (710)
+++ =...+|..+.|.|..
T Consensus 333 L~~mreRv~~lgG~l~i~S~~ 353 (365)
T COG4585 333 LLGMRERVEALGGTLTIDSAP 353 (365)
T ss_pred hhhHHHHHHHcCCEEEEEecC
Confidence 432 123478888888876
No 84
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=92.71 E-value=0.27 Score=61.98 Aligned_cols=93 Identities=11% Similarity=0.164 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcccccCCC-ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCcee
Q 005166 211 IFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 289 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~-~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGf 289 (710)
+..+|..||+||+++... .+.|.+.... .......-.|.|.|||.||+++++.+++...++.+. ....+..|+|+
T Consensus 829 l~qvl~NLl~NAik~~~~g~i~i~~~~~~-~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~---~~~~~G~GLGL 904 (1197)
T PRK09959 829 FKQVLSNLLSNALKFTTEGAVKITTSLGH-IDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA---GRQQTGSGLGL 904 (1197)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEee-ecCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc---CCCCCCcCchH
Confidence 567899999999998643 4455443210 000111235789999999999999998763332221 11223468887
Q ss_pred eee---ccccCceEEEEEeeC
Q 005166 290 KTG---AMRLGKDALVLTQTA 307 (710)
Q Consensus 290 KsA---~m~lg~~v~V~Sk~~ 307 (710)
..+ .-..|.++.|.|...
T Consensus 905 ~i~~~iv~~~gG~i~v~s~~~ 925 (1197)
T PRK09959 905 MICKELIKNMQGDLSLESHPG 925 (1197)
T ss_pred HHHHHHHHHcCCEEEEEeCCC
Confidence 532 224688888888654
No 85
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=91.82 E-value=0.53 Score=56.78 Aligned_cols=89 Identities=18% Similarity=0.293 Sum_probs=56.1
Q ss_pred HHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-cccCCCCCCCCCcccccCceee
Q 005166 212 FGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVGFK 290 (710)
Q Consensus 212 ~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~-fG~s~k~~~d~~~IG~fGiGfK 290 (710)
..+|..|||||....-+.-+|.|.... ..+.-.+.|.|+|.|++.+++.+.|. |-+..+.. + ..--|+|+.
T Consensus 777 eQVLiNLleNA~Kyap~~s~I~I~~~~----~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~-~---~~G~GLGLs 848 (890)
T COG2205 777 EQVLINLLENALKYAPPGSEIRINAGV----ERENVVFSVIDEGPGIPEGELERIFDKFYRGNKES-A---TRGVGLGLA 848 (890)
T ss_pred HHHHHHHHHHHHhhCCCCCeEEEEEEE----ecceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCC-C---CCCccccHH
Confidence 478999999999987654444444211 34567889999999999999999985 54444321 1 222355553
Q ss_pred e--ecc-ccCceEEEEEeeCC
Q 005166 291 T--GAM-RLGKDALVLTQTAD 308 (710)
Q Consensus 291 s--A~m-~lg~~v~V~Sk~~~ 308 (710)
- ++. ..|..+.+.++..+
T Consensus 849 Ic~~iv~ahgG~I~a~~~~~g 869 (890)
T COG2205 849 ICRGIVEAHGGTISAENNPGG 869 (890)
T ss_pred HHHHHHHHcCCeEEEEEcCCC
Confidence 1 111 34666666664333
No 86
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=91.75 E-value=0.44 Score=57.42 Aligned_cols=99 Identities=23% Similarity=0.357 Sum_probs=64.8
Q ss_pred cCCHHHHHHhhccccCCHHHHHHHHHhcccccCC--------------CccEEEEEeeecccCCCCcCEEEEEeCCCCCC
Q 005166 194 RADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMT 259 (710)
Q Consensus 194 ~v~p~~L~~lst~~~~~~~~AIaELIDNS~DA~A--------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt 259 (710)
.++..+|..|+ ..|..||-||+|.|- -.|.+.... .++.-.|.|.|||.||+
T Consensus 424 elDksIlE~l~--------dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~------~gn~ivIev~DDG~Gid 489 (716)
T COG0643 424 ELDKSILERLG--------DPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYH------EGNNIVIEVSDDGAGID 489 (716)
T ss_pred eehHHHHHHhc--------ccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEc------CCCeEEEEEeeCCCCCC
Confidence 35555555442 457789999999972 244444332 34566789999999999
Q ss_pred hhhHHh-hhh-----------------------cccCCCCCCCCCcccccCcee---eeeccccCceEEEEEeeCC
Q 005166 260 HQDVVR-MTY-----------------------FGHKQPDADDPNRIGRFGVGF---KTGAMRLGKDALVLTQTAD 308 (710)
Q Consensus 260 ~edl~~-~l~-----------------------fG~s~k~~~d~~~IG~fGiGf---KsA~m~lg~~v~V~Sk~~~ 308 (710)
++.+.+ ++. -|+|.+. ....+.--|+|| |+..-+||..+.|.|+...
T Consensus 490 ~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~--~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~ 563 (716)
T COG0643 490 REKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAE--QVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGK 563 (716)
T ss_pred HHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcch--hhhcccCCccCHHHHHHHHHHcCCEEEEEecCCC
Confidence 998754 332 2444432 233444558997 5666678999999887654
No 87
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=90.09 E-value=0.17 Score=46.47 Aligned_cols=45 Identities=16% Similarity=0.538 Sum_probs=35.6
Q ss_pred Ccccccc-CC--CCCchhhhHHHHHHHhhcCCeEEEEEece------eEEEEeC
Q 005166 70 SHCFLSP-AP--ECSRDHNEWRRFLIYLQGRDMVAIAKFKF------WEFYILP 114 (710)
Q Consensus 70 ~~~~~~p-~~--~~~~~~~ew~~f~~~l~~~~~~~~~~~~~------~~~~~~~ 114 (710)
-.+++.+ .| .++.+...+.+|..||...+|+|||.++. ..|||+|
T Consensus 66 ~v~v~~~~~~~~~~~~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 66 DVCVVALSSPESDSNSDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp EEEEEEE-SSHHHHHHHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred eEEEEEEcCCcccCHHHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 4455555 34 67888999999999999999999999995 8899998
No 88
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=90.01 E-value=0.31 Score=56.59 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCcee
Q 005166 211 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 289 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGf 289 (710)
....+.|+|+||+.+. +..|.|.+.. .++.-.|.|.|||.||+++.- + .-|+|+
T Consensus 470 l~~il~ell~NA~kha~a~~i~V~~~~------~~~~~~l~V~D~G~Gi~~~~~----------~---------~~glGL 524 (569)
T PRK10600 470 LLQIAREALSNALKHAQASEVVVTVAQ------NQNQVKLSVQDNGCGVPENAE----------R---------SNHYGL 524 (569)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCcccc----------C---------CCCccH
Confidence 6688999999999864 5677777753 234567899999999987531 0 125666
Q ss_pred ee---eccccCceEEEEEeeC
Q 005166 290 KT---GAMRLGKDALVLTQTA 307 (710)
Q Consensus 290 Ks---A~m~lg~~v~V~Sk~~ 307 (710)
.. -.-++|.++.|.|...
T Consensus 525 ~i~~~~~~~lgG~l~i~s~~~ 545 (569)
T PRK10600 525 IIMRDRAQSLRGDCRVRRRES 545 (569)
T ss_pred HHHHHHHHHcCCEEEEEECCC
Confidence 32 1224777777777543
No 89
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=89.88 E-value=0.36 Score=53.23 Aligned_cols=71 Identities=17% Similarity=0.369 Sum_probs=50.5
Q ss_pred HHHHHHHHhcccccC--CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-cccCCCCCCCCCcccccCce
Q 005166 212 FGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 212 ~~AIaELIDNS~DA~--A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~-fG~s~k~~~d~~~IG~fGiG 288 (710)
...|-.+|.||+..+ ..+|.|.+.. ....-.++|.|.|.|++++++.+.|. |-.-.+. .....|--|+|
T Consensus 344 tQVldNii~NA~KYsP~Gg~Itv~~~~------~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA--RsR~~gGTGLG 415 (459)
T COG5002 344 TQVLDNIISNALKYSPDGGRITVSVKQ------RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA--RSRKMGGTGLG 415 (459)
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEEEee------eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh--hhhcCCCCchh
Confidence 467788999999875 4567776653 23456789999999999999999885 4333332 34456767888
Q ss_pred ee
Q 005166 289 FK 290 (710)
Q Consensus 289 fK 290 (710)
+.
T Consensus 416 La 417 (459)
T COG5002 416 LA 417 (459)
T ss_pred HH
Confidence 74
No 90
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=89.76 E-value=0.38 Score=49.87 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEeeecccCCCC-cCEEEEEeCCCCCChh
Q 005166 211 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKD-IPMLSIIDDGHGMTHQ 261 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A-----~~I~I~I~~~~~~~~~~~-~~~L~I~DNG~GMt~e 261 (710)
+--++.||+.||+..++ ..|.|.+... ..+ ...+.|+|||.|++.+
T Consensus 123 Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~-----~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 123 LGLIVHELVTNALKHAFLSRPGGEIRITLSRE-----GDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEc-----CCCCeEEEEEEECCCCCCCC
Confidence 34789999999999876 3566666531 112 3689999999998654
No 91
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=89.30 E-value=0.82 Score=44.54 Aligned_cols=85 Identities=19% Similarity=0.190 Sum_probs=52.1
Q ss_pred CHHHHHHHHHhcccccCC------CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCccc
Q 005166 210 WIFGAIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 283 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~A------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG 283 (710)
....|+.|++.|++.++- ..|.|.... ..+...++|+|.|.|+ +++...+.-+.... +....|
T Consensus 40 ~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~------~~~~~~i~i~D~G~~~--~~~~~~~~~~~~~~---~~~~~~ 108 (146)
T COG2172 40 DLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSL------DDGKLEIRIWDQGPGI--EDLEESLGPGDTTA---EGLQEG 108 (146)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEE------cCCeEEEEEEeCCCCC--CCHHHhcCCCCCCC---cccccc
Confidence 467999999999998742 245554442 3456788999999554 55555555443222 122334
Q ss_pred ccCceeeeeccccCceEEEEEeeCC
Q 005166 284 RFGVGFKTGAMRLGKDALVLTQTAD 308 (710)
Q Consensus 284 ~fGiGfKsA~m~lg~~v~V~Sk~~~ 308 (710)
|+|| ....++.+++.+.....+
T Consensus 109 --G~Gl-~l~~~~~D~~~~~~~~~~ 130 (146)
T COG2172 109 --GLGL-FLAKRLMDEFSYERSEDG 130 (146)
T ss_pred --cccH-HHHhhhheeEEEEeccCC
Confidence 6676 444557777777644333
No 92
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=87.73 E-value=0.86 Score=51.89 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=39.4
Q ss_pred CHHHHHHHHHhcccccCC----CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhh
Q 005166 210 WIFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 267 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~A----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l 267 (710)
.|...|-=|||||+-||. ....|.+.... ..+.-.++|.|||.||+++......
T Consensus 350 ~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~----~~~~i~i~i~Dng~g~~~~~~~~~~ 407 (456)
T COG2972 350 DPKLVLQPLVENAIEHGIEPKRPGGSIAISAKK----QDDVIQISISDNGPGIDEEKLEGLS 407 (456)
T ss_pred CchHHHhHHHHHHHHHhcccCCCCCEEEEEEEE----cCCEEEEEEeeCCCCCChhHHHHHH
Confidence 577888899999999973 34455554311 2356678999999999998876654
No 93
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=86.70 E-value=1.1 Score=51.07 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=45.7
Q ss_pred CHHHHHHHHHhcccccCC---CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCC
Q 005166 210 WIFGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQP 274 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~A---~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k 274 (710)
.....+..|+-||+||.. +.|+|.... ...+..+|.|.|||.|-+.+-+.+.+..-++.|
T Consensus 564 ~ieQVlvNl~~NaldA~~h~~p~i~~~~~~-----~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK 626 (673)
T COG4192 564 SIEQVLVNLIVNALDASTHFAPWIKLIALG-----TEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSK 626 (673)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEeec-----CcccceEEEEecCCCCCchhHHHHhcCCccccc
Confidence 477899999999999964 556665542 134677889999999999998888887444444
No 94
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=86.55 E-value=0.82 Score=53.64 Aligned_cols=56 Identities=16% Similarity=0.342 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-cccC
Q 005166 211 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHK 272 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A---------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~-fG~s 272 (710)
+-.|+..||.||.+|.+ ..|.+..+. ..+.-.+.|.|||.|.+.+..++++. +.++
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~------~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTt 666 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDD------ADGRIVVDVIDNGKGFPRENRHRALEPYVTT 666 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEec------CCCeEEEEEecCCCCCChHHhhhhccCceec
Confidence 34788999999999842 124444442 34567889999999999999999875 4443
No 95
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=81.08 E-value=2.2 Score=50.46 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=52.5
Q ss_pred CCcceecCCHHHHHHhhccccCCHHHHHHHHHhcccccCC---CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHH
Q 005166 188 LEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV 264 (710)
Q Consensus 188 ~~~~~~~v~p~~L~~lst~~~~~~~~AIaELIDNS~DA~A---~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~ 264 (710)
...-.+++.| |..+...- .-.-..+..||.||+..+. +.|.|..+. .+...++.|.|||.|++++-+.
T Consensus 617 dtgaei~i~~--lp~v~~d~-~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r------~ed~~t~sV~dng~Gi~~a~~~ 687 (750)
T COG4251 617 DTGAEIRIAP--LPVVAADA-TQLGQVFQNLIANAIKFGGPENPDIEISAER------QEDEWTFSVRDNGIGIDPAYFE 687 (750)
T ss_pred cccceEEecc--cceeecCH-HHHHHHHHHHHhhheecCCCCCCceEEeeec------cCCceEEEecCCCCCcCHHHHH
Confidence 3455666776 66654333 1245777899999998864 567777664 3457899999999999999999
Q ss_pred hhhh
Q 005166 265 RMTY 268 (710)
Q Consensus 265 ~~l~ 268 (710)
+.|.
T Consensus 688 riF~ 691 (750)
T COG4251 688 RIFV 691 (750)
T ss_pred HHHH
Confidence 9875
No 96
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK13559 hypothetical protein; Provisional
Probab=79.81 E-value=1.9 Score=46.43 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEeeecccCCCCcCEEEEEeCCCCCChh
Q 005166 211 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 261 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A-----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 261 (710)
+..++.|||.||+.+++ ..|.|.+... ...+...|.+.|||.|++++
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~----~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPS----PEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEec----CCCCeEEEEEECCCCCCCCC
Confidence 45689999999999854 3566665211 12345678899999997654
No 98
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=79.24 E-value=2.4 Score=48.61 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChh
Q 005166 211 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 261 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 261 (710)
....+.+|+.||+.+. +..|.|.+... ..+.-.|.|.|||.||+++
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~~-----~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVTN-----PDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEc-----CCCEEEEEEEECCcCcCCC
Confidence 4468899999999864 34566665421 1345678999999999864
No 99
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=78.34 E-value=3.9 Score=45.12 Aligned_cols=74 Identities=23% Similarity=0.412 Sum_probs=49.5
Q ss_pred HHHHHHHhccc-----ccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCc
Q 005166 213 GAIAELVDNSR-----DAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 287 (710)
Q Consensus 213 ~AIaELIDNS~-----DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGi 287 (710)
+|+--.++-|+ -|||++|.|.+.. ..+.-.+.|.|||.|++.++..+- ..|+
T Consensus 358 talyRv~QEaltNIErHa~Atrv~ill~~------~~d~vql~vrDnG~GF~~~~~~~~-----------------~~Gi 414 (459)
T COG4564 358 TALYRVVQEALTNIERHAGATRVTILLQQ------MGDMVQLMVRDNGVGFSVKEALQK-----------------RHGI 414 (459)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEEecc------CCcceEEEEecCCCCccchhhccC-----------------cccc
Confidence 44444444443 3589999998873 456778999999999988765332 1488
Q ss_pred eeeee--cc-ccCceEEEEEeeCCC
Q 005166 288 GFKTG--AM-RLGKDALVLTQTADS 309 (710)
Q Consensus 288 GfKsA--~m-~lg~~v~V~Sk~~~~ 309 (710)
|+..- -| .+|..++|.|-..|+
T Consensus 415 GLRNMrERma~~GG~~~v~s~p~GT 439 (459)
T COG4564 415 GLRNMRERMAHFGGELEVESSPQGT 439 (459)
T ss_pred ccccHHHHHHHhCceEEEEecCCCc
Confidence 87521 11 268888888876665
No 100
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=60.98 E-value=14 Score=40.70 Aligned_cols=62 Identities=19% Similarity=0.138 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcccccCCC----ccEEEEEeeecc--cCC----CCcCEEEEEeCCCCCChhhHHhhhhcccC
Q 005166 211 IFGAIAELVDNSRDAKAT----KLEISIESIYFK--KAG----KDIPMLSIIDDGHGMTHQDVVRMTYFGHK 272 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~----~I~I~I~~~~~~--~~~----~~~~~L~I~DNG~GMt~edl~~~l~fG~s 272 (710)
+..|+-.||.||..|.+. .=.|.+....-- +.. .-.-.|.|.|||.|++.+-....|.-.-|
T Consensus 242 liQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs 313 (363)
T COG3852 242 LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVS 313 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccc
Confidence 568999999999999762 122333211000 000 11234679999999998877777753333
No 101
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=57.17 E-value=13 Score=41.59 Aligned_cols=45 Identities=29% Similarity=0.411 Sum_probs=35.9
Q ss_pred CHHHHHHHHHhcccc-cCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCCh
Q 005166 210 WIFGAIAELVDNSRD-AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 260 (710)
Q Consensus 210 ~~~~AIaELIDNS~D-A~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ 260 (710)
..+-..-|++.|-.. |.|+.|+|.+-. +++.-.+.|.|||.|++.
T Consensus 410 TLyRl~QE~LNNI~KHA~AS~V~i~l~~------~~e~l~Lei~DdG~Gl~~ 455 (497)
T COG3851 410 TLYRLCQELLNNICKHADASAVTIQLWQ------QDERLMLEIEDDGSGLPP 455 (497)
T ss_pred eHHHHHHHHHHHHHhccccceEEEEEee------CCcEEEEEEecCCcCCCC
Confidence 377888999999875 689999998763 334478999999999865
No 102
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=56.54 E-value=2.4 Score=33.25 Aligned_cols=34 Identities=24% Similarity=0.742 Sum_probs=22.8
Q ss_pred CCCCceeeCccchhhccCCC-CCC--C-CCCCCCceec
Q 005166 597 KPDQEWVQCNKCRKWRMLDP-GFD--T-KSLPVEWFCY 630 (710)
Q Consensus 597 ~~~~~WVQCd~C~KWR~Lp~-~~~--~-~~lp~~W~C~ 630 (710)
.....|||||.|..|-...= +.. . ......|+|.
T Consensus 9 ~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~ 46 (51)
T PF00628_consen 9 DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCP 46 (51)
T ss_dssp CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSH
T ss_pred CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECc
Confidence 44679999999999988762 221 1 2233489985
No 103
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=47.67 E-value=17 Score=42.12 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcccccCC------CccEEEEEeeecccCCCCcCEEEEEeCCCCCChh
Q 005166 211 IFGAIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 261 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 261 (710)
|.--|-=||+||+..|- -.|.|.+.. .+..-.+.|+|||.|+.++
T Consensus 457 P~filQPLVENAIKHG~~~~~~~g~V~I~V~~------~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 457 PSFILQPLVENAIKHGISQLKDTGRVTISVEK------EDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred chhhhhHHHHHHHHhcccchhcCCceEEEEEE------eCCeEEEEEecCCCCcCCC
Confidence 44557778999998863 466676664 3445789999999999886
No 104
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=41.37 E-value=11 Score=35.46 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=13.9
Q ss_pred chhhhHHHHHHHhhcCC
Q 005166 82 RDHNEWRRFLIYLQGRD 98 (710)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (710)
+...+|++||||..+++
T Consensus 91 ~s~~~WdRFMRFMeRYA 107 (113)
T PRK13610 91 NSEEAFERFMRFASRYA 107 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998775
No 105
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=39.44 E-value=13 Score=34.67 Aligned_cols=17 Identities=24% Similarity=0.821 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 005166 82 RDHNEWRRFLIYLQGRD 98 (710)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (710)
+...+|++||||..+++
T Consensus 84 ~s~~~WdRFMRFmeRYA 100 (109)
T TIGR03047 84 KSEDEWDRFMRFMERYA 100 (109)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 106
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=38.76 E-value=1.1e+02 Score=37.81 Aligned_cols=45 Identities=20% Similarity=0.453 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcccc----cCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhH
Q 005166 211 IFGAIAELVDNSRD----AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 263 (710)
Q Consensus 211 ~~~AIaELIDNS~D----A~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl 263 (710)
++.-+-|++.||.| ++-..|.+.|+ .+...+.|.+||.|++-+..
T Consensus 54 l~ki~dEilvNaadk~rd~~m~~i~v~i~--------~e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 54 LYKIFDEILVNAADKQRDPKMNTIKVTID--------KEKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred HHHHHHHHhhcccccccCCCcceeEEEEc--------cCCCEEEEEeCCCcceeeec
Confidence 55678899999998 22356666665 35689999999999987654
No 107
>PF03912 Psb28: Psb28 protein; InterPro: IPR005610 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein Psb28 (PsbW) found in PSII, where it is a subunit of the oxygen-evolving complex. Psb28 appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of Psb28, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 1 Psb28.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0016020 membrane; PDB: 2KVO_A.
Probab=38.25 E-value=12 Score=34.96 Aligned_cols=15 Identities=27% Similarity=0.831 Sum_probs=12.8
Q ss_pred hhhHHHHHHHhhcCC
Q 005166 84 HNEWRRFLIYLQGRD 98 (710)
Q Consensus 84 ~~ew~~f~~~l~~~~ 98 (710)
..+|++||||+.+++
T Consensus 86 ~~~WdRFMRFMeRYA 100 (108)
T PF03912_consen 86 EEEWDRFMRFMERYA 100 (108)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 469999999998765
No 108
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=37.16 E-value=16 Score=34.35 Aligned_cols=17 Identities=29% Similarity=0.794 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 005166 82 RDHNEWRRFLIYLQGRD 98 (710)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (710)
+...+|++||||..+++
T Consensus 85 ~s~~~WdRFMRFMeRYA 101 (111)
T PLN00039 85 RSPREWDRFMRFMERYA 101 (111)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 109
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=36.10 E-value=17 Score=34.27 Aligned_cols=17 Identities=24% Similarity=0.792 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 005166 82 RDHNEWRRFLIYLQGRD 98 (710)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (710)
+...+|++||||..+++
T Consensus 87 ~s~~~WdRFMRFMeRYA 103 (113)
T PRK13612 87 KSEQEWDRFMRFMERYA 103 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 110
>PF14501 HATPase_c_5: GHKL domain
Probab=36.04 E-value=63 Score=28.68 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcccccC-----CCccEEEEEeeecccCCCCcCEEEEEeCCCC
Q 005166 211 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHG 257 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~-----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~G 257 (710)
+-..|.-|+|||++|. .+.|.|.+.. ..+...|.|.-...+
T Consensus 6 l~~il~nlldNAiea~~~~~~~~~I~i~~~~------~~~~~~i~i~N~~~~ 51 (100)
T PF14501_consen 6 LCRILGNLLDNAIEACKKYEDKRFISISIRE------ENGFLVIIIENSCEK 51 (100)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEEEEe------cCCEEEEEEEECCCC
Confidence 5578899999999983 3456666553 234555666655333
No 111
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=35.45 E-value=17 Score=33.66 Aligned_cols=17 Identities=29% Similarity=0.729 Sum_probs=14.1
Q ss_pred chhhhHHHHHHHhhcCC
Q 005166 82 RDHNEWRRFLIYLQGRD 98 (710)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (710)
+...+|++||||..+++
T Consensus 80 ~s~~~wdRFMRFmeRYA 96 (104)
T PRK13611 80 ETEAEWDRFLRFMERFS 96 (104)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 35679999999998875
No 112
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=34.86 E-value=18 Score=34.07 Aligned_cols=17 Identities=18% Similarity=0.729 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 005166 82 RDHNEWRRFLIYLQGRD 98 (710)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (710)
+...+|++||||..+++
T Consensus 87 ~s~~~WdRFMRFMeRYA 103 (113)
T CHL00128 87 KNPEAWDRFMRFMERYA 103 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 113
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=28.16 E-value=66 Score=37.36 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHhccccc-----CCCccEEEEEeeecccCCCCcCEEEEEeCCC---CCChhhHHhhhhcccCCCC-----
Q 005166 209 GWIFGAIAELVDNSRDA-----KATKLEISIESIYFKKAGKDIPMLSIIDDGH---GMTHQDVVRMTYFGHKQPD----- 275 (710)
Q Consensus 209 ~~~~~AIaELIDNS~DA-----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~---GMt~edl~~~l~fG~s~k~----- 275 (710)
..|..||+|+|-||+-. ..+.|.|.+- ...|.|.-.|. ||+++++.+- .|..+
T Consensus 269 dyP~~alREai~NAv~HRDYs~~~~~v~I~iy----------dDRieI~NPGgl~~gi~~~~l~~~----~s~~RNp~LA 334 (467)
T COG2865 269 DYPLEALREAIINAVIHRDYSIRGRNVHIEIY----------DDRIEITNPGGLPPGITPEDLLKG----RSKSRNPVLA 334 (467)
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCceEEEEE----------CCeEEEECCCCCCCCCChhHcccC----CCcccCHHHH
Confidence 45889999999999954 2347777775 36899998786 7777776553 22111
Q ss_pred --CCCCCcccccCceeee
Q 005166 276 --ADDPNRIGRFGVGFKT 291 (710)
Q Consensus 276 --~~d~~~IG~fGiGfKs 291 (710)
..+...+-++|-|+..
T Consensus 335 ~~l~~~~liE~~GSGi~r 352 (467)
T COG2865 335 KVLRDMGLIEERGSGIRR 352 (467)
T ss_pred HHHHHhhhHHHhCccHHH
Confidence 0135677788999853
No 114
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=26.49 E-value=30 Score=37.26 Aligned_cols=29 Identities=21% Similarity=0.795 Sum_probs=22.2
Q ss_pred ceeeCcc--ch-hhccCCC-CCCCCCCCCCceec
Q 005166 601 EWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 630 (710)
Q Consensus 601 ~WVQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 630 (710)
.-|.||. |- .|=+++= |+. ..-.++|||.
T Consensus 231 ~Mi~CDn~~C~~eWFH~~CVGL~-~~PkgkWyC~ 263 (274)
T KOG1973|consen 231 KMIGCDNPGCPIEWFHFTCVGLK-TKPKGKWYCP 263 (274)
T ss_pred cccccCCCCCCcceEEEeccccc-cCCCCcccch
Confidence 7799996 99 9999984 443 3455789996
No 115
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=25.85 E-value=73 Score=33.55 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=50.6
Q ss_pred CCccccccccccccee---eccCCCccccccCCCCCchhhhHHHHHHHhhcCCeEEEEEecee-----EEEEeCCC
Q 005166 49 LPHHWNVNDIVPTSKI---ILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFW-----EFYILPPD 116 (710)
Q Consensus 49 ~p~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~ew~~f~~~l~~~~~~~~~~~~~~-----~~~~~~~~ 116 (710)
-+..+.|.+|+|.+-+ -+.+.++++. |.........--.-+.+=|...++|||+++-.- .|..|-|.
T Consensus 87 ~~~~l~ilgF~~~~~i~~~~~~~~s~~l~-P~~~~~~s~~af~aL~~am~~~~kvai~r~v~r~~~~p~l~aL~P~ 161 (272)
T cd00594 87 TSKGLDILGFVPASEIPPYYFDKESYYLV-PDDSDKGSEKAFSALRRALLEKDKVAIARYVLRRNSRPRLVALRPQ 161 (272)
T ss_pred CCCeEEEEeEechHhCCcceecCCcEEEE-cCCCCcccHHHHHHHHHHHHHcCcEEEEEEEEcCCCCcEEEEEecc
Confidence 4567889999999988 3555566666 777555666677888899999999999998654 36666665
No 116
>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen. This is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain, that also occurs in bacterial hypothetical proteins.
Probab=24.35 E-value=83 Score=30.22 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=47.5
Q ss_pred Cccccccccccccee-e--ccCCCccccccCCCC-CchhhhHHHHHHHhhcCCeEEEEEece-----eEEEEeCCCC
Q 005166 50 PHHWNVNDIVPTSKI-I--LDGMSHCFLSPAPEC-SRDHNEWRRFLIYLQGRDMVAIAKFKF-----WEFYILPPDQ 117 (710)
Q Consensus 50 p~~~~~~~~~~~~~~-~--~~~~~~~~~~p~~~~-~~~~~ew~~f~~~l~~~~~~~~~~~~~-----~~~~~~~~~~ 117 (710)
+..+.|.+|+|.+-+ . +.++++.+. |.+.. .....--.-+.+=|...++|||+++-. -.+-.|-|..
T Consensus 35 ~~~l~ilgF~~~~~i~~~~~~~~s~~i~-P~~~~~~~s~~a~~aL~~am~~~~~~aiar~v~r~~~~p~l~aL~P~~ 110 (140)
T smart00559 35 EPGLELLGFKPLSSLPPYYFLRPSYFLV-PDDKSVIGSTKAFSALVEALLETDKIAIARYTLRTKSNPRLVALRPYD 110 (140)
T ss_pred CCeEEEEeecChHHCCHhHccCCcEEEe-eCCcccchhHHHHHHHHHHHHhcCCEEEEEEEEcCCCCCEEEEEEeee
Confidence 578899999999988 2 445556666 77753 224445556777789999999999932 4677776663
No 117
>PF06540 GMAP: Galanin message associated peptide (GMAP); InterPro: IPR013068 Galanin is a peptide hormone that controls various biological activities []. Galanin-like immuno-reactivity has been found in the central and peripheral nervous systems of mammals, with high concentrations demonstrated in discrete regions of the central nervous system, including the median eminence, hypothalamus, arcuate nucleus, septum, neuro-intermediate lobe of the pituitary, and the spinal cord. Its localisation within neurosecretory granules suggests that galanin may function as a neurotransmitter, and it has been shown to coexist with a variety of other peptide and amine neurotransmitters within individual neurons []. Although the precise physiological role of galanin is uncertain, it has a number of pharmacological properties: it stimulates food intake, when injected into the third ventricle of rats; it increases levels of plasma growth hormone and prolactin, and decreases dopamine levels in the median eminence []; and infusion into humans results in hyperglycemia and glucose intolerance, and inhibits pancreatic release of insulin, somatostatin and pancreatic peptide. Galanin also modulates smooth muscle contractility within the gastro-intestinal and genito-urinary tracts, all such activities suggesting that the hormone may play an important role in the nervous modulation of endocrine and smooth muscle function []. This domain represents the galanin message-associated peptide (GMAP) domain which is found C-terminal to the galanin domain in the preprogalanin precursor protein. GMAP sequences in different species show a high degree of homology, but the biological function of the GMAP peptide is not known [].
Probab=22.86 E-value=74 Score=26.91 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=25.0
Q ss_pred CCCccccccCCCCCchhhhHHHHHHHhhcCCeEEE
Q 005166 68 GMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAI 102 (710)
Q Consensus 68 ~~~~~~~~p~~~~~~~~~ew~~f~~~l~~~~~~~~ 102 (710)
+.+=++-+|.| +++-++-=.+||+||+=...=|.
T Consensus 11 ~r~G~~~r~l~-d~nivrTiiEFLtfLhLKEaGAL 44 (62)
T PF06540_consen 11 FRPGSFDRPLA-DDNIVRTIIEFLTFLHLKEAGAL 44 (62)
T ss_pred cccccccCCCc-hhHHHHHHHHHHHHHHHHHhcch
Confidence 34446667888 56778899999999986665443
Done!