Query 005166
Match_columns 710
No_of_seqs 370 out of 2255
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 17:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3peh_A Endoplasmin homolog; st 99.9 6.5E-23 2.2E-27 214.1 9.6 169 193-372 28-228 (281)
2 3nmq_A Heat shock protein HSP 99.9 6.7E-23 2.3E-27 209.9 9.0 169 192-371 20-218 (239)
3 1y4s_A Chaperone protein HTPG; 99.9 2.3E-20 8E-25 211.6 23.7 171 192-371 8-209 (559)
4 3ied_A Heat shock protein; HSP 99.8 1.2E-21 4E-26 201.6 9.5 162 198-371 35-268 (272)
5 1qy5_A Endoplasmin; GRP94, NEC 99.8 9.2E-22 3.1E-26 205.2 6.5 162 198-371 16-212 (269)
6 3t0h_A Heat shock protein HSP 99.8 3.5E-21 1.2E-25 196.4 8.1 171 190-371 11-211 (228)
7 3o0i_A HSP90AA1 protein; HSP90 99.8 3.7E-21 1.3E-25 198.9 7.9 170 191-371 40-239 (256)
8 2gqp_A Endoplasmin; GRP94, HSP 99.8 4.4E-21 1.5E-25 196.5 8.2 167 193-371 14-216 (236)
9 2ioq_A Chaperone protein HTPG; 99.8 5.8E-20 2E-24 210.7 18.3 170 193-371 9-209 (624)
10 1yc1_A HSP 86, heat shock prot 99.8 1.4E-20 4.9E-25 195.8 9.6 164 197-371 55-247 (264)
11 2wer_A ATP-dependent molecular 99.8 2.2E-20 7.5E-25 189.1 10.1 164 197-371 13-206 (220)
12 2cg9_A ATP-dependent molecular 99.8 9E-20 3.1E-24 210.1 13.1 169 193-372 8-207 (677)
13 2ior_A Chaperone protein HTPG; 99.8 9.2E-20 3.2E-24 186.5 8.2 165 198-371 35-229 (235)
14 2o1u_A Endoplasmin; GRP94, HSP 99.8 1.4E-19 4.7E-24 208.5 6.9 162 198-371 33-229 (666)
15 2e61_A Zinc finger CW-type PWW 99.6 6.5E-17 2.2E-21 135.5 4.9 54 594-647 10-67 (69)
16 1b63_A MUTL; DNA mismatch repa 99.6 1E-14 3.4E-19 156.3 21.6 110 190-309 3-119 (333)
17 2l7p_A Histone-lysine N-methyl 99.6 2.3E-16 7.8E-21 140.8 -0.0 58 593-650 19-79 (100)
18 3h4l_A DNA mismatch repair pro 99.4 4.5E-13 1.5E-17 145.4 8.6 140 191-343 5-150 (367)
19 1h7s_A PMS1 protein homolog 2; 99.3 2.3E-12 7.8E-17 139.8 9.7 140 191-343 14-160 (365)
20 3na3_A DNA mismatch repair pro 99.3 4.3E-12 1.5E-16 136.7 10.4 141 190-343 7-154 (348)
21 1kij_A DNA gyrase subunit B; t 98.9 1.8E-08 6.1E-13 110.2 16.1 88 211-308 33-135 (390)
22 1ei1_A DNA gyrase B, GYRB; ATP 98.9 6.1E-08 2.1E-12 106.0 20.1 99 210-322 34-147 (391)
23 3fv5_A DNA topoisomerase 4 sub 98.9 4.1E-09 1.4E-13 105.4 9.2 120 211-344 18-155 (201)
24 3cwv_A DNA gyrase, B subunit, 98.8 6.5E-08 2.2E-12 105.0 18.2 97 210-322 30-130 (369)
25 1zxm_A TOPO IIA ATPase, DNA to 98.7 4.3E-08 1.5E-12 107.5 10.9 89 210-307 52-156 (400)
26 1s16_A Topoisomerase IV subuni 98.6 1.2E-07 3.9E-12 103.8 11.1 287 212-583 33-361 (390)
27 4duh_A DNA gyrase subunit B; s 98.6 7E-08 2.4E-12 97.9 8.7 120 210-345 35-172 (220)
28 4emv_A DNA topoisomerase IV, B 98.6 1.7E-07 5.7E-12 95.5 10.0 121 211-345 41-179 (226)
29 1mu5_A Type II DNA topoisomera 98.4 9.1E-07 3.1E-11 99.0 10.5 96 210-309 32-137 (471)
30 2zbk_B Type 2 DNA topoisomeras 98.3 1.2E-06 4.2E-11 99.2 9.9 96 210-309 31-136 (530)
31 3lnu_A Topoisomerase IV subuni 98.3 9.2E-07 3.1E-11 97.1 7.3 120 212-345 52-189 (408)
32 2q2e_B Type 2 DNA topoisomeras 98.1 1.9E-06 6.5E-11 99.3 6.4 131 210-345 37-181 (621)
33 3ttz_A DNA gyrase subunit B; p 98.0 9.8E-06 3.4E-10 80.8 8.6 145 211-393 32-183 (198)
34 1pvg_A DNA topoisomerase II; G 98.0 1.5E-05 5.2E-10 87.8 9.5 123 211-345 65-207 (418)
35 1id0_A PHOQ histidine kinase; 97.7 7.5E-05 2.6E-09 68.3 7.6 85 211-306 45-132 (152)
36 1bxd_A ENVZ(290-450), protein 97.6 8.3E-05 2.8E-09 69.1 6.4 87 211-306 48-137 (161)
37 2c2a_A Sensor histidine kinase 97.4 0.00018 6E-09 72.0 6.2 90 211-307 139-236 (258)
38 2q8g_A [pyruvate dehydrogenase 97.4 0.00017 5.7E-09 78.3 6.2 91 211-307 244-351 (407)
39 3a0y_A Sensor protein; ATP-LID 97.4 0.00018 6E-09 65.5 5.4 82 211-305 48-135 (152)
40 1th8_A Anti-sigma F factor; SP 97.3 0.00027 9.2E-09 64.8 5.8 82 211-306 40-126 (145)
41 2e0a_A Pyruvate dehydrogenase 97.3 0.00022 7.6E-09 77.0 5.6 91 211-307 231-338 (394)
42 1ysr_A Sensor-type histidine k 97.2 0.00059 2E-08 62.4 7.5 86 211-306 47-136 (150)
43 2btz_A Pyruvate dehydrogenase 97.2 0.00022 7.4E-09 77.0 5.1 91 211-307 232-338 (394)
44 4ew8_A Sensor protein DIVL; si 97.2 0.00044 1.5E-08 69.1 6.9 83 211-306 156-243 (268)
45 3jz3_A Sensor protein QSEC; he 97.2 0.00018 6.2E-09 69.3 3.9 85 211-307 118-205 (222)
46 1gkz_A [3-methyl-2-oxobutanoat 97.2 0.00017 5.7E-09 77.6 3.8 91 211-307 239-361 (388)
47 1y8o_A [pyruvate dehydrogenase 97.2 0.00023 7.9E-09 77.7 4.9 91 211-307 254-362 (419)
48 1i58_A Chemotaxis protein CHEA 97.2 0.00011 3.9E-09 70.1 2.2 47 211-263 48-108 (189)
49 3sl2_A Sensor histidine kinase 97.1 0.00045 1.5E-08 65.2 5.2 92 211-307 44-140 (177)
50 3d36_A Sporulation kinase B; G 97.1 0.00058 2E-08 66.8 6.2 85 211-307 124-213 (244)
51 3ehg_A Sensor kinase (YOCF pro 97.1 0.00026 9E-09 63.7 3.4 71 211-306 41-115 (128)
52 1r62_A Nitrogen regulation pro 97.0 0.00017 6E-09 66.0 1.4 90 211-307 49-148 (160)
53 1b3q_A Protein (chemotaxis pro 96.9 0.00082 2.8E-08 72.5 5.6 88 212-307 108-236 (379)
54 3a0r_A Sensor protein; four he 96.9 0.00058 2E-08 70.5 4.2 82 211-305 245-332 (349)
55 3ehh_A Sensor kinase (YOCF pro 96.8 0.00084 2.9E-08 65.0 4.1 71 211-306 131-205 (218)
56 3zxo_A Redox sensor histidine 96.4 0.0033 1.1E-07 55.8 5.3 69 210-307 43-115 (129)
57 4gfh_A DNA topoisomerase 2; to 96.4 0.011 3.9E-07 72.5 11.3 101 211-322 60-176 (1177)
58 3zxq_A Hypoxia sensor histidin 95.9 0.0063 2.2E-07 53.7 4.3 45 211-262 40-85 (124)
59 4fpp_A Phosphotransferase; fou 93.5 0.061 2.1E-06 54.0 4.8 82 211-305 147-235 (247)
60 4gut_A Lysine-specific histone 92.1 0.019 6.7E-07 67.8 -1.2 45 600-644 91-145 (776)
61 3o70_A PHD finger protein 13; 92.0 0.078 2.7E-06 43.9 2.7 32 599-630 30-62 (68)
62 3o7a_A PHD finger protein 13 v 91.1 0.082 2.8E-06 41.3 1.8 32 599-630 15-47 (52)
63 1we9_A PHD finger family prote 89.8 0.16 5.4E-06 41.1 2.5 34 598-631 18-54 (64)
64 2lv9_A Histone-lysine N-methyl 89.0 0.2 6.7E-06 44.3 2.6 33 599-631 39-72 (98)
65 1wee_A PHD finger family prote 88.6 0.2 6.9E-06 41.6 2.3 31 600-630 29-61 (72)
66 3ke6_A Protein RV1364C/MT1410; 88.1 0.42 1.4E-05 51.7 5.1 47 210-261 297-348 (399)
67 2kgg_A Histone demethylase jar 84.1 0.23 7.8E-06 38.8 0.3 35 596-630 12-49 (52)
68 3kqi_A GRC5, PHD finger protei 79.9 0.43 1.5E-05 39.9 0.5 33 598-630 21-56 (75)
69 1ixm_A SPO0B, protein (sporula 78.5 0.99 3.4E-05 44.4 2.7 47 216-268 111-167 (192)
70 1wep_A PHF8; structural genomi 77.3 0.28 9.7E-06 41.4 -1.4 33 598-630 23-58 (79)
71 2rsd_A E3 SUMO-protein ligase 74.5 1.7 5.7E-05 35.7 2.6 32 599-630 21-60 (68)
72 1wew_A DNA-binding family prot 73.4 0.98 3.3E-05 38.1 0.9 33 598-630 26-67 (78)
73 2ri7_A Nucleosome-remodeling f 73.2 0.6 2.1E-05 44.7 -0.5 34 598-631 19-55 (174)
74 2k16_A Transcription initiatio 72.0 1 3.5E-05 37.4 0.7 32 599-630 30-63 (75)
75 2vpb_A Hpygo1, pygopus homolog 71.0 1.4 4.8E-05 36.1 1.3 19 596-614 18-37 (65)
76 1weu_A Inhibitor of growth fam 60.1 3.8 0.00013 35.8 2.0 30 600-630 47-80 (91)
77 1wen_A Inhibitor of growth fam 56.9 5.4 0.00018 33.1 2.3 30 600-630 27-60 (71)
78 1wem_A Death associated transc 56.2 3.3 0.00011 34.4 0.9 32 599-630 27-65 (76)
79 2g6q_A Inhibitor of growth pro 50.9 5.2 0.00018 32.3 1.2 30 600-630 22-55 (62)
80 3c6w_A P28ING5, inhibitor of g 50.2 5.4 0.00018 31.9 1.2 30 600-630 20-53 (59)
81 3pur_A Lysine-specific demethy 48.0 6.6 0.00022 44.3 1.9 36 596-631 52-90 (528)
82 1ow1_A Smart/HDAC1 associated 46.5 10 0.00035 37.5 2.8 30 88-117 128-164 (195)
83 2jmi_A Protein YNG1, ING1 homo 44.6 10 0.00036 33.0 2.2 30 600-630 37-70 (90)
84 3lqh_A Histone-lysine N-methyl 42.6 8 0.00028 37.8 1.3 32 600-631 19-59 (183)
85 3kv5_D JMJC domain-containing 41.0 3.9 0.00013 45.8 -1.3 35 597-631 47-84 (488)
86 2vnf_A ING 4, P29ING4, inhibit 40.7 9.3 0.00032 30.5 1.2 30 600-630 21-54 (60)
87 2xb1_A Pygopus homolog 2, B-ce 39.8 9.7 0.00033 33.8 1.3 35 596-630 13-56 (105)
88 2kvo_A Photosystem II reaction 36.8 8.3 0.00028 35.3 0.4 16 83-98 86-101 (120)
89 2ku7_A MLL1 PHD3-CYP33 RRM chi 30.2 12 0.0004 33.3 0.2 12 602-613 2-13 (140)
90 1x4i_A Inhibitor of growth pro 28.9 11 0.00037 31.1 -0.2 31 599-630 16-50 (70)
No 1
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.87 E-value=6.5e-23 Score=214.13 Aligned_cols=169 Identities=24% Similarity=0.342 Sum_probs=130.1
Q ss_pred ecCC-HHHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeeecccCCCCcCEEEEEeCC
Q 005166 193 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 255 (710)
Q Consensus 193 ~~v~-p~~L~~lst~~~~~~~~AIaELIDNS~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG 255 (710)
|++. .++|..++.+.|+++..||+|||+||+||.+ ..+.|.|.. +.+...|+|.|||
T Consensus 28 Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~------d~~~~tLtI~DNG 101 (281)
T 3peh_A 28 YQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISA------NKEKNILSITDTG 101 (281)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred ehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEE------cCCCcEEEEEeCC
Confidence 4444 3566777888889999999999999999974 345666653 2346799999999
Q ss_pred CCCChhhHHhhh-hcccCCCC---------CCCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCce
Q 005166 256 HGMTHQDVVRMT-YFGHKQPD---------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 325 (710)
Q Consensus 256 ~GMt~edl~~~l-~fG~s~k~---------~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~ 325 (710)
+||++++|.++| .++.|.+. ..+...||+||+||+||+| +|++|+|.||+.+. .++.|.+. +...
T Consensus 102 iGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~-vadkV~V~Sk~~~~--~~~~Wes~--g~g~ 176 (281)
T 3peh_A 102 IGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNDD--EQYIWEST--ADAK 176 (281)
T ss_dssp CCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEEE--TTSC
T ss_pred CCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc-ccCEEEEEEecCCC--CEEEEEEC--CCcc
Confidence 999999998866 45555321 2357899999999999876 99999999999874 57888773 3345
Q ss_pred EEEcCc---ccCCCCcEEEEEecCcc-cchhhhhHHh-HhhhCCCchhhHHH
Q 005166 326 LEIPIV---SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 372 (710)
Q Consensus 326 i~VPi~---~~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~pI~e 372 (710)
++|... .-..+||.|+|+++++. ++...+.++. |.+||.|..+||..
T Consensus 177 fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l 228 (281)
T 3peh_A 177 FTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYL 228 (281)
T ss_dssp EEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEE
T ss_pred EEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEE
Confidence 655432 23468999999999764 7888888865 99999999998853
No 2
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.87 E-value=6.7e-23 Score=209.95 Aligned_cols=169 Identities=22% Similarity=0.306 Sum_probs=130.1
Q ss_pred eecCC-HHHHHHhhccccCCHHHHHHHHHhcccccCCC----------------ccEEEEEeeecccCCCCcCEEEEEeC
Q 005166 192 FVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSIIDD 254 (710)
Q Consensus 192 ~~~v~-p~~L~~lst~~~~~~~~AIaELIDNS~DA~A~----------------~I~I~I~~~~~~~~~~~~~~L~I~DN 254 (710)
.|+.+ .++|+.++.+.|++...+|+|||+||.||.+. .+.|.|.. +.....|+|.||
T Consensus 20 ~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~L~I~Dn 93 (239)
T 3nmq_A 20 AFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP------NPQERTLTLVDT 93 (239)
T ss_dssp ECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred eehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------eCCccEEEEEeC
Confidence 34454 46778888888999999999999999999642 35666653 234679999999
Q ss_pred CCCCChhhHHhhh-hcccCCC--------CCCCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCce
Q 005166 255 GHGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 325 (710)
Q Consensus 255 G~GMt~edl~~~l-~fG~s~k--------~~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~ 325 (710)
|+||++++|.+.| .++.|.+ ...+...||+||+||++++| +|++++|.||+.+. .++.|.+ .+...
T Consensus 94 GiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~~--~~~~W~s--~~~g~ 168 (239)
T 3nmq_A 94 GIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHNDD--EQYAWES--SAGGS 168 (239)
T ss_dssp SCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CSTTE
T ss_pred CCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCCC--ceeEEEE--CCCCc
Confidence 9999999997765 3444321 12357899999999999866 99999999999764 4778877 34456
Q ss_pred EEEcCcc--cCCCCcEEEEEecCcc-cchhhhhHHh-HhhhCCCchhhHH
Q 005166 326 LEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 371 (710)
Q Consensus 326 i~VPi~~--~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~pI~ 371 (710)
++|.... -..+||+|+|+++++. ++..++.++. |.|||.|..+||.
T Consensus 169 fti~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~ 218 (239)
T 3nmq_A 169 FTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPIT 218 (239)
T ss_dssp EEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEE
T ss_pred EEEEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceE
Confidence 7764432 2358999999999764 7888888865 9999999999885
No 3
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.85 E-value=2.3e-20 Score=211.57 Aligned_cols=171 Identities=22% Similarity=0.301 Sum_probs=130.0
Q ss_pred eecCCH-HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEeeecccCCCCcCEEEEEeC
Q 005166 192 FVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDD 254 (710)
Q Consensus 192 ~~~v~p-~~L~~lst~~~~~~~~AIaELIDNS~DA~----------------A~~I~I~I~~~~~~~~~~~~~~L~I~DN 254 (710)
.|++.. +.|+.++.+.|+++..||+|||+||+||+ +..+.|.|.. +.+...|+|.||
T Consensus 8 ~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~I~I~Dn 81 (559)
T 1y4s_A 8 GFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDN 81 (559)
T ss_dssp ECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred eeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEE------eCCCcEEEEEEC
Confidence 366666 46677788888999999999999999998 5555555542 123479999999
Q ss_pred CCCCChhhHHhhh-hcccCCCC----------CCCCCcccccCceeeeeccccCceEEEEEeeCCC-CceeEEEEeecCC
Q 005166 255 GHGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQG 322 (710)
Q Consensus 255 G~GMt~edl~~~l-~fG~s~k~----------~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~-~s~~~ls~sf~~g 322 (710)
|+||+++++.+++ .+++|.+. ..+...||+||+||+|+++ +|++++|.||+.+. ...++.|.+ .+
T Consensus 82 GiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s--~g 158 (559)
T 1y4s_A 82 GVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWES--AG 158 (559)
T ss_dssp SSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHH-HEEEEEEEEECSSSCGGGEEEEEE--CS
T ss_pred CCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhh-ccCeEEEEEcCCCCCCCeeEEEEE--eC
Confidence 9999999998876 47766532 1256799999999998776 99999999999874 356888876 34
Q ss_pred CceEEEcCcccCCCCcEEEEEecCcc-cchhhhhHHh-HhhhCCCchhhHH
Q 005166 323 KDNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 371 (710)
Q Consensus 323 ~~~i~VPi~~~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~pI~ 371 (710)
...+.|....-..+||.|+++++++. +++..+.++. |.+||.|..+||.
T Consensus 159 ~~~~~i~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~ 209 (559)
T 1y4s_A 159 EGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (559)
T ss_dssp SSEEEEEEECCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEE
T ss_pred CCeeEEeECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 44555543333468999999998653 6676778865 8999999998874
No 4
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.85 E-value=1.2e-21 Score=201.63 Aligned_cols=162 Identities=25% Similarity=0.345 Sum_probs=124.8
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccCC--------------------------------------------------
Q 005166 198 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA-------------------------------------------------- 227 (710)
Q Consensus 198 ~~L~~lst~~~~~~~~AIaELIDNS~DA~A-------------------------------------------------- 227 (710)
++|..+..+.|++...+|+|||+||.||..
T Consensus 35 ~ll~li~~slYs~keiFlRELISNasDA~dK~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 114 (272)
T 3ied_A 35 KVMDIIVNSLYTDKDVFLRELISNASDACDKKRIILENNKLIKDAEVVTNEEIKNETEKEKTENVNESTDKKENVEEEKN 114 (272)
T ss_dssp HHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------------------C
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHHHhccChhhhhccccccccccccccccccccccccccccccccccccC
Confidence 566667888889999999999999999932
Q ss_pred --CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-cccCCC--------C-CCCCCcccccCceeeeeccc
Q 005166 228 --TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP--------D-ADDPNRIGRFGVGFKTGAMR 295 (710)
Q Consensus 228 --~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~-fG~s~k--------~-~~d~~~IG~fGiGfKsA~m~ 295 (710)
..+.|.|.. +.....|+|.|||+||++++|.+.|. ++.|.+ . ..+...|||||+||++|+|
T Consensus 115 ~~~~l~I~I~~------Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFm- 187 (272)
T 3ied_A 115 DIKKLIIKIKP------DKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFL- 187 (272)
T ss_dssp GGGGCCEEEEE------ETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGG-
T ss_pred CCCCcEEEEEE------eCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeec-
Confidence 123455542 23567999999999999999998763 444321 1 1357899999999999876
Q ss_pred cCceEEEEEeeCCCCceeEEEEeecCCCceEEEcCcc--------cCCCCcEEEEEecCcc-cchhhhhHHh-HhhhCCC
Q 005166 296 LGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS--------YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPF 365 (710)
Q Consensus 296 lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~--------~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF 365 (710)
+|++|+|.|| .+ ..++.|.+ .+...|+|.... ...+||+|+|+++++. +++.++.++. |.|||.|
T Consensus 188 VAdkV~V~Sk-~d--d~~~~WeS--~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~likkys~f 262 (272)
T 3ied_A 188 VSNRVEVYTK-KE--DQIYRWSS--DLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELIKKYSEF 262 (272)
T ss_dssp TEEEEEEEEE-SS--SCEEEEEE--CSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTT
T ss_pred cCCEEEEEEc-CC--CceEEEEE--CCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHHHHHHHhC
Confidence 9999999999 33 46888887 455677764332 3468999999999764 7888888875 9999999
Q ss_pred chhhHH
Q 005166 366 NKYLIG 371 (710)
Q Consensus 366 ~s~pI~ 371 (710)
..+||.
T Consensus 263 i~~PI~ 268 (272)
T 3ied_A 263 IKFPIE 268 (272)
T ss_dssp CCSCEE
T ss_pred CCCCeE
Confidence 999885
No 5
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.84 E-value=9.2e-22 Score=205.16 Aligned_cols=162 Identities=20% Similarity=0.323 Sum_probs=124.6
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeeecccCCCCcCEEEEEeCCCCCChh
Q 005166 198 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 261 (710)
Q Consensus 198 ~~L~~lst~~~~~~~~AIaELIDNS~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 261 (710)
++|+.++.+.|+++..||+|||+||+||++ ..+.|.|.. +.+...|+|.|||+||+++
T Consensus 16 ~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~------d~~~~~l~I~DnGiGMt~e 89 (269)
T 1qy5_A 16 RMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTGVGMTRE 89 (269)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEE------cCCceEEEEEECCCCCCHH
Confidence 466777877888899999999999999976 456666653 2346799999999999999
Q ss_pred hHHhhh-hcccCCCC--------C-----CCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEE
Q 005166 262 DVVRMT-YFGHKQPD--------A-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLE 327 (710)
Q Consensus 262 dl~~~l-~fG~s~k~--------~-----~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~ 327 (710)
+|.++| .+++|.+. . .+...||+||+||++++| ++++++|+||+.+. .++.|.+ .+ ..+.
T Consensus 90 dl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~-va~~v~V~Sk~~~~--~~~~w~s--~g-g~~~ 163 (269)
T 1qy5_A 90 ELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--DS-NEFS 163 (269)
T ss_dssp HHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CS-SCEE
T ss_pred HHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhh-ccceEEEEEEecCC--cEEEEEE--eC-CEEE
Confidence 998766 45555210 0 356789999999998876 99999999999875 4677766 33 4565
Q ss_pred EcCcc---cCCCCcEEEEEecCcc-cchhhhhHHh-HhhhCCCchhhHH
Q 005166 328 IPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 371 (710)
Q Consensus 328 VPi~~---~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~pI~ 371 (710)
|.... -..+||.|+|+++.+. ++...+.++. |.+||.|..+||.
T Consensus 164 i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~ 212 (269)
T 1qy5_A 164 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 212 (269)
T ss_dssp EEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEE
T ss_pred EEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeE
Confidence 54322 2358999999998653 6677777765 8899999999885
No 6
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.83 E-value=3.5e-21 Score=196.41 Aligned_cols=171 Identities=23% Similarity=0.303 Sum_probs=129.5
Q ss_pred cceecCC-HHHHHHhhccccCCHHHHHHHHHhcccccCCC----------------ccEEEEEeeecccCCCCcCEEEEE
Q 005166 190 KNFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSII 252 (710)
Q Consensus 190 ~~~~~v~-p~~L~~lst~~~~~~~~AIaELIDNS~DA~A~----------------~I~I~I~~~~~~~~~~~~~~L~I~ 252 (710)
.-.|+++ .++|..++.+.|+++..+|+|||+||+||+++ .+.|.|.. +.+...|+|.
T Consensus 11 ~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~------d~~~~~i~V~ 84 (228)
T 3t0h_A 11 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIV 84 (228)
T ss_dssp EEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEEE
T ss_pred ceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEE------eCCeeEEEEE
Confidence 3445555 46778888888899999999999999999863 56666653 2357899999
Q ss_pred eCCCCCChhhHHhhh-hcccCCCC--------CCCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCC
Q 005166 253 DDGHGMTHQDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK 323 (710)
Q Consensus 253 DNG~GMt~edl~~~l-~fG~s~k~--------~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~ 323 (710)
|||.||++++|..++ .+++|.+. ..+...+|+||+||+++++ ++++++|.||+.+. .++.|.+ .+.
T Consensus 85 DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~-vad~v~V~Sr~~~~--~~~~w~~--~g~ 159 (228)
T 3t0h_A 85 DTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWES--SAG 159 (228)
T ss_dssp ECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CEEEEEE--CST
T ss_pred eCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc-cCCEEEEEEecCCC--CcEEEEE--cCC
Confidence 999999999998765 35554321 1357899999999998866 99999999999863 5788876 334
Q ss_pred ceEEEcCc--ccCCCCcEEEEEecCcc-cchhhhhHHh-HhhhCCCchhhHH
Q 005166 324 DNLEIPIV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 371 (710)
Q Consensus 324 ~~i~VPi~--~~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~pI~ 371 (710)
..+.|... .-..+||+|+++++.+. ++...+.++. |.+|+.|..+||.
T Consensus 160 ~~~~v~~~~~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~ 211 (228)
T 3t0h_A 160 GSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 211 (228)
T ss_dssp TEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEE
T ss_pred ceEEEeecCCCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeE
Confidence 45655432 23458999999998764 5666667754 9999999998885
No 7
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.83 E-value=3.7e-21 Score=198.86 Aligned_cols=170 Identities=23% Similarity=0.304 Sum_probs=129.2
Q ss_pred ceecCC-HHHHHHhhccccCCHHHHHHHHHhcccccCCC----------------ccEEEEEeeecccCCCCcCEEEEEe
Q 005166 191 NFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSIID 253 (710)
Q Consensus 191 ~~~~v~-p~~L~~lst~~~~~~~~AIaELIDNS~DA~A~----------------~I~I~I~~~~~~~~~~~~~~L~I~D 253 (710)
--|+.. .++|..++.+.|++...||+|||+||+||+++ .+.|.|.. +.+...|+|.|
T Consensus 40 ~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~I~I~D 113 (256)
T 3o0i_A 40 FAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIVD 113 (256)
T ss_dssp EECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEEE
T ss_pred EEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------cCCceEEEEec
Confidence 344555 45667778888899999999999999999863 56676653 23578999999
Q ss_pred CCCCCChhhHHhhh-hcccCCCC--------CCCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCc
Q 005166 254 DGHGMTHQDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD 324 (710)
Q Consensus 254 NG~GMt~edl~~~l-~fG~s~k~--------~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~ 324 (710)
||+||++++|..+| .+++|.+. ..+...+|+||+||+++++ ++++++|.||+.+. .++.|.+ .+..
T Consensus 114 nG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~-Vadkv~V~Sr~~~~--~g~~w~s--~gg~ 188 (256)
T 3o0i_A 114 TGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWES--SAGG 188 (256)
T ss_dssp CSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CEEEEEE--CSTT
T ss_pred CCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhc-cCCeEEEEEcCCCC--ceEEEEE--eccc
Confidence 99999999998765 35543221 1357899999999998876 99999999999863 5888877 3344
Q ss_pred eEEEcCc--ccCCCCcEEEEEecCcc-cchhhhhHHh-HhhhCCCchhhHH
Q 005166 325 NLEIPIV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 371 (710)
Q Consensus 325 ~i~VPi~--~~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~pI~ 371 (710)
.+.|... .-..+||+|+|+++.+. ++.+.+.++. |.+|+.|..+||.
T Consensus 189 ~~~v~~~~~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~ 239 (256)
T 3o0i_A 189 SFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 239 (256)
T ss_dssp EEEEEECCSSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEE
T ss_pred eEEEeeCCCCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeE
Confidence 5655432 23358999999998754 6777777764 9999999998885
No 8
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.83 E-value=4.4e-21 Score=196.51 Aligned_cols=167 Identities=20% Similarity=0.319 Sum_probs=121.1
Q ss_pred ecCC-HHHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeeecccCCCCcCEEEEEeCC
Q 005166 193 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 255 (710)
Q Consensus 193 ~~v~-p~~L~~lst~~~~~~~~AIaELIDNS~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG 255 (710)
|++. ..+++.++.+.|+.+..||+|||+||+||+| ..+.|.|.. +.+...|+|.|||
T Consensus 14 F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~------d~~~~~i~I~DnG 87 (236)
T 2gqp_A 14 FQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTG 87 (236)
T ss_dssp CCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred hhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEE------cCCCCEEEEEECC
Confidence 4444 3566777877888999999999999999987 335555542 1245799999999
Q ss_pred CCCChhhHHhhh-hcccCCCC--------C-----CCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecC
Q 005166 256 HGMTHQDVVRMT-YFGHKQPD--------A-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ 321 (710)
Q Consensus 256 ~GMt~edl~~~l-~fG~s~k~--------~-----~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~ 321 (710)
+||++++|.++| .+++|.+. . .+...||+||+||+++++ ++++++|.||+.+. .++.|.+ .
T Consensus 88 ~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~-va~~v~V~Sr~~~~--~~~~w~~--~ 162 (236)
T 2gqp_A 88 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--D 162 (236)
T ss_dssp CCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--S
T ss_pred cCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhh-cCCEEEEEEeCCCC--ceEEEEE--e
Confidence 999999998866 46666321 0 345789999999987665 99999999999875 3677765 3
Q ss_pred CCceEEEcCcc---cCCCCcEEEEEecCcc-cchhhhhHH-hHhhhCCCchhhHH
Q 005166 322 GKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLK-SIKEFSPFNKYLIG 371 (710)
Q Consensus 322 g~~~i~VPi~~---~~~~Gt~I~l~~~~~~-e~~~~~~L~-~I~kySpF~s~pI~ 371 (710)
+ ..+.+.... -..+||.|+++++.+. ++.+.+.++ +|.+|+.|..+||.
T Consensus 163 g-g~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~ 216 (236)
T 2gqp_A 163 S-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 216 (236)
T ss_dssp S-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEE
T ss_pred C-CEEEEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceE
Confidence 3 455553322 2357999999998653 555667775 49999999998885
No 9
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.83 E-value=5.8e-20 Score=210.68 Aligned_cols=170 Identities=22% Similarity=0.311 Sum_probs=124.4
Q ss_pred ecCCH-HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEeeecccCCCCcCEEEEEeCC
Q 005166 193 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 255 (710)
Q Consensus 193 ~~v~p-~~L~~lst~~~~~~~~AIaELIDNS~DA~----------------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG 255 (710)
|++.. +.|+.++.+.|+++..||+|||+||+||+ +..+.|.|.. +.+...|+|.|||
T Consensus 9 Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~------d~~~~~I~I~DnG 82 (624)
T 2ioq_A 9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDNG 82 (624)
T ss_dssp ------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred eeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEE------eCCCcEEEEEECC
Confidence 44444 45677777788899999999999999998 6555666552 1235799999999
Q ss_pred CCCChhhHHhhh-hcccCCCC----------CCCCCcccccCceeeeeccccCceEEEEEeeCCC-CceeEEEEeecCCC
Q 005166 256 HGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQGK 323 (710)
Q Consensus 256 ~GMt~edl~~~l-~fG~s~k~----------~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~-~s~~~ls~sf~~g~ 323 (710)
+||+++++.+++ .+++|.+. ..+...||+||+||+|+++ +|++++|.||+.+. ...++.|.+. +.
T Consensus 83 iGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s~--g~ 159 (624)
T 2ioq_A 83 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWESA--GE 159 (624)
T ss_dssp CCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHH-HEEEEEEEEECTTSCGGGEEEEEEC--SS
T ss_pred CCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHh-cCCeEEEEECCCCCCCCeeEEEEEe--CC
Confidence 999999998865 46766531 1357799999999998777 99999999999873 3568888763 33
Q ss_pred ceEEEcCcccCCCCcEEEEEecCcc-cchhhhhHHh-HhhhCCCchhhHH
Q 005166 324 DNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 371 (710)
Q Consensus 324 ~~i~VPi~~~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~pI~ 371 (710)
..+.|....-..+||.|+++++++. ++...+.++. |.+||.|..+||.
T Consensus 160 ~~~~i~~~~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~ 209 (624)
T 2ioq_A 160 GEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (624)
T ss_dssp SCCEEEEECCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEE
T ss_pred CeEEEEECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 3444432233468999999998653 6677788865 8999999998874
No 10
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.82 E-value=1.4e-20 Score=195.76 Aligned_cols=164 Identities=23% Similarity=0.305 Sum_probs=126.4
Q ss_pred HHHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeeecccCCCCcCEEEEEeCCCCCCh
Q 005166 197 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 260 (710)
Q Consensus 197 p~~L~~lst~~~~~~~~AIaELIDNS~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ 260 (710)
.+.+..++...|+++..||+|||+||+||+| +.+.|.|.. ..+...|+|.|||+||++
T Consensus 55 ~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~------d~~~~~I~I~DnG~GMs~ 128 (264)
T 1yc1_A 55 AQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIP------NKQDRTLTIVDTGIGMTK 128 (264)
T ss_dssp HHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEE------ETTTTEEEEEECSCCCCH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEE------CCCeeEEEEEECCcCCCH
Confidence 3567777888889999999999999999998 788888763 234678999999999999
Q ss_pred hhHHhhh-hcccCCCC--------CCCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcCc
Q 005166 261 QDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV 331 (710)
Q Consensus 261 edl~~~l-~fG~s~k~--------~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~ 331 (710)
++|.+++ .+++|.+. ..+...||+||+||+++++ ++++++|.||+.+. .++.|... +...+.+...
T Consensus 129 edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~--~~~~w~~~--~~~~~~i~~~ 203 (264)
T 1yc1_A 129 ADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWESS--AGGSFTVRTD 203 (264)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHH-HEEEEEEEEECTTS--CCEEEEEC--STTEEEEEEC
T ss_pred HHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCcccccc-CCCEEEEEEecCCC--ceEEEEEc--CCceEEEeec
Confidence 9998765 47766532 1356799999999998776 99999999999874 46777764 2334554322
Q ss_pred -c-cCCCCcEEEEEecCcc-cchhhhhHH-hHhhhCCCchhhHH
Q 005166 332 -S-YYRKGQFMELDTVVQS-EATAKYNLK-SIKEFSPFNKYLIG 371 (710)
Q Consensus 332 -~-~~~~Gt~I~l~~~~~~-e~~~~~~L~-~I~kySpF~s~pI~ 371 (710)
. -..+||.|+|+++.+. ++...+.++ +|.+|+.|..+||.
T Consensus 204 ~~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~ 247 (264)
T 1yc1_A 204 TGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 247 (264)
T ss_dssp CSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEE
T ss_pred CCCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEE
Confidence 1 2357999999997653 455666665 49999999998884
No 11
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.82 E-value=2.2e-20 Score=189.08 Aligned_cols=164 Identities=22% Similarity=0.292 Sum_probs=123.3
Q ss_pred HHHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeeecccCCCCcCEEEEEeCCCCCCh
Q 005166 197 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 260 (710)
Q Consensus 197 p~~L~~lst~~~~~~~~AIaELIDNS~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ 260 (710)
.+.++.++...|+++..||+|||+||+||+| ..+.|.+.. +.+...|+|.|||+||++
T Consensus 13 ~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~------~~~~~~i~I~DnG~GMs~ 86 (220)
T 2wer_A 13 TQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRDSGIGMTK 86 (220)
T ss_dssp HHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEE------EGGGTEEEEEECSCCCCH
T ss_pred HHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEE------CCCCCEEEEEEcCCCCCH
Confidence 4566777887888999999999999999987 455666653 124678999999999999
Q ss_pred hhHHhhh-hcccCCC--------CCCCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcCc
Q 005166 261 QDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIV 331 (710)
Q Consensus 261 edl~~~l-~fG~s~k--------~~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~ 331 (710)
+++.+++ .+++|.+ ...+...+|+||+||+++++ ++++++|.|++.+. .++.|... +...+.+...
T Consensus 87 edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~-~~~~v~v~S~~~~~--~~~~~~~~--~~~~~~i~~~ 161 (220)
T 2wer_A 87 AELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--EQYIWESN--AGGSFTVTLD 161 (220)
T ss_dssp HHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEEC--SSSEEEEEEC
T ss_pred HHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhh-cCCeeEEEEecCCC--ceeEEEeC--CCCceEeecc
Confidence 9998765 5776542 12357899999999987754 99999999999874 46777653 3335555332
Q ss_pred c---cCCCCcEEEEEecCcc-cchhhhhHHh-HhhhCCCchhhHH
Q 005166 332 S---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 371 (710)
Q Consensus 332 ~---~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~pI~ 371 (710)
. -..+||+|+++++.+. ++.+.+.++. |.+|+.|..+||.
T Consensus 162 ~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~ 206 (220)
T 2wer_A 162 EVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQ 206 (220)
T ss_dssp SSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEE
T ss_pred cCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceE
Confidence 2 3357999999998653 4556666654 8999999998884
No 12
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.80 E-value=9e-20 Score=210.06 Aligned_cols=169 Identities=22% Similarity=0.300 Sum_probs=129.4
Q ss_pred ecCC-HHHHHHhhccccCCHHHHHHHHHhcccccCC----------------CccEEEEEeeecccCCCCcCEEEEEeCC
Q 005166 193 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 255 (710)
Q Consensus 193 ~~v~-p~~L~~lst~~~~~~~~AIaELIDNS~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG 255 (710)
|+.. .+.|+.++.+.|+++..+|+|||+||+||++ ..+.|.|.. +.+...|+|.|||
T Consensus 8 Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~------d~~~~~I~I~DnG 81 (677)
T 2cg9_A 8 FQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRDSG 81 (677)
T ss_dssp CCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEE------EGGGTEEEEEECS
T ss_pred hhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEE------eCCCCEEEEEECC
Confidence 5555 4677777888889999999999999999973 345555542 1235789999999
Q ss_pred CCCChhhHHhhh-hcccCCC--------CCCCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceE
Q 005166 256 HGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL 326 (710)
Q Consensus 256 ~GMt~edl~~~l-~fG~s~k--------~~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i 326 (710)
+||+++++.++| .+++|.+ ...+...||+||+||++|+| ++++|+|.||+.+. .++.|.+ .+...+
T Consensus 82 iGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~-vadkV~V~Sk~~~~--~~~~W~s--~g~~~~ 156 (677)
T 2cg9_A 82 IGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD--EQYIWES--NAGGSF 156 (677)
T ss_dssp CCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGG-TEEEEEEEEECTTS--CEEEEEE--CSSSEE
T ss_pred CCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhh-cCcEEEEEEccCCC--ceEEEEE--cCCceE
Confidence 999999998876 4555532 12357899999999998866 99999999999984 4888877 344456
Q ss_pred EEcCc---ccCCCCcEEEEEecCcc-cchhhhhHHh-HhhhCCCchhhHHH
Q 005166 327 EIPIV---SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 372 (710)
Q Consensus 327 ~VPi~---~~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~pI~e 372 (710)
.|... .-..+||.|+|+++++. +++..+.++. |.+||.|..+||..
T Consensus 157 ti~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l 207 (677)
T 2cg9_A 157 TVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQL 207 (677)
T ss_dssp EEEECCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEE
T ss_pred EEeecCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEE
Confidence 55432 23458999999998754 6777788865 88999999999853
No 13
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.79 E-value=9.2e-20 Score=186.55 Aligned_cols=165 Identities=22% Similarity=0.310 Sum_probs=121.8
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChh
Q 005166 198 SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 261 (710)
Q Consensus 198 ~~L~~lst~~~~~~~~AIaELIDNS~DA~----------------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 261 (710)
.++..++...++++..||+|||+||+||+ ++.+.|.|.. ..+...|+|.|||+||+++
T Consensus 35 ~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~------~~~~~~i~I~DnG~GMs~e 108 (235)
T 2ior_A 35 QLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDNGVGMTRD 108 (235)
T ss_dssp HHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEE------ETTTTEEEEEECSSCCCHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEE------cCCceEEEEEECCCCCCHH
Confidence 45566677777889999999999999998 5556666653 1234679999999999999
Q ss_pred hHHhhh-hcccCCCC----------CCCCCcccccCceeeeeccccCceEEEEEeeCCCC-ceeEEEEeecCCCceEEEc
Q 005166 262 DVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSR-SIAFLSQSLNQGKDNLEIP 329 (710)
Q Consensus 262 dl~~~l-~fG~s~k~----------~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~-s~~~ls~sf~~g~~~i~VP 329 (710)
+|..++ .++++.+. ..+...+|+||+||+++ +.++++++|.||+.+.. ..++.|... +...+.+.
T Consensus 109 dl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~-~~~~~~v~V~Sr~~~~~~~~~~~w~~~--~~~~~~i~ 185 (235)
T 2ior_A 109 EVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAGEKPENGVFWESA--GEGEYTVA 185 (235)
T ss_dssp HHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGG-GGTEEEEEEEEECTTSCGGGEEEEEEC--SSSEEEEE
T ss_pred HHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHH-HhCcCeEEEEEecCCCCCceeEEEEec--CCCcEEEe
Confidence 998765 57776531 01356899999999876 55999999999998752 467888763 33344443
Q ss_pred CcccCCCCcEEEEEecCcc-cchhhhhHH-hHhhhCCCchhhHH
Q 005166 330 IVSYYRKGQFMELDTVVQS-EATAKYNLK-SIKEFSPFNKYLIG 371 (710)
Q Consensus 330 i~~~~~~Gt~I~l~~~~~~-e~~~~~~L~-~I~kySpF~s~pI~ 371 (710)
...-...||+|+++++++. ++.+.+.++ +|.+|+.|..+||.
T Consensus 186 ~~~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~ 229 (235)
T 2ior_A 186 DITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 229 (235)
T ss_dssp EECCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEE
T ss_pred eCCCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeE
Confidence 2233457999999998653 455556665 49999999988774
No 14
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.77 E-value=1.4e-19 Score=208.45 Aligned_cols=162 Identities=20% Similarity=0.323 Sum_probs=111.5
Q ss_pred HHHHHhhccccCCHHHHHHHHHhcccccC----------------CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChh
Q 005166 198 SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 261 (710)
Q Consensus 198 ~~L~~lst~~~~~~~~AIaELIDNS~DA~----------------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 261 (710)
+.|+.++.+.|+++..+|+|||+||+||+ +..+.|.|.. +.+...|+|.|||+||+++
T Consensus 33 ~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~------d~~~~~I~I~DnGiGMt~e 106 (666)
T 2o1u_A 33 RMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTGVGMTRE 106 (666)
T ss_dssp -CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEE------eCCCCEEEEEECCCCCCHH
Confidence 34555677788899999999999999997 6556666653 2245799999999999999
Q ss_pred hHHhhh-hcccCCCC--------C-----CCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEE
Q 005166 262 DVVRMT-YFGHKQPD--------A-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLE 327 (710)
Q Consensus 262 dl~~~l-~fG~s~k~--------~-----~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~ 327 (710)
++.++| .+++|.+. . .+...||+||+||++++| +|++|+|.||+.+. .++.|.+ .+ ..+.
T Consensus 107 dl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~-vAdkV~V~Sr~~~~--~~~~W~s--~g-g~~t 180 (666)
T 2o1u_A 107 ELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--DS-NEFS 180 (666)
T ss_dssp HHHHHTTC-------------------------------CTTGGGGG-TEEEEEEEEECTTS--CCEEEEE--SS-SCCE
T ss_pred HHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHH-hcCEEEEEEeeCCC--ceEEEEE--eC-CeEE
Confidence 998876 35555221 1 356799999999998866 99999999999875 4777876 33 4455
Q ss_pred EcCcc---cCCCCcEEEEEecCcc-cchhhhhHHh-HhhhCCCchhhHH
Q 005166 328 IPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 371 (710)
Q Consensus 328 VPi~~---~~~~Gt~I~l~~~~~~-e~~~~~~L~~-I~kySpF~s~pI~ 371 (710)
|.... -..+||+|+++++++. ++...+.++. |.+||.|..+||.
T Consensus 181 i~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~ 229 (666)
T 2o1u_A 181 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 229 (666)
T ss_dssp EEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEE
T ss_pred EEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceE
Confidence 53222 2358999999998754 6677788865 9999999998874
No 15
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.65 E-value=6.5e-17 Score=135.54 Aligned_cols=54 Identities=33% Similarity=0.699 Sum_probs=48.5
Q ss_pred CCCCCCCceeeCc--cchhhccCCCCCCCCCCCCCceecCCCC--CCCCCCCcccccC
Q 005166 594 ALYKPDQEWVQCN--KCRKWRMLDPGFDTKSLPVEWFCYMKPF--EGLCDLPEQKVDA 647 (710)
Q Consensus 594 ~~~~~~~~WVQCd--~C~KWR~Lp~~~~~~~lp~~W~C~~n~~--~~sC~~pEe~~~~ 647 (710)
.......+||||| .|+|||+||.++++..+|++|||+||++ +++|++|||.++.
T Consensus 10 ~~~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~d~~~~~Cs~pEE~~~~ 67 (69)
T 2e61_A 10 SGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEETWTG 67 (69)
T ss_dssp SSCCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCSCGGGCSSSSCCCCCCC
T ss_pred CCCCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCCCCccCCCCCCcccCCC
Confidence 3455678999999 9999999999999888999999999996 7999999998864
No 16
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.64 E-value=1e-14 Score=156.27 Aligned_cols=110 Identities=20% Similarity=0.240 Sum_probs=88.3
Q ss_pred cceecCCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh
Q 005166 190 KNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 268 (710)
Q Consensus 190 ~~~~~v~p~~L~~l-st~~~~~~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~ 268 (710)
|.|..+++...+.+ +...+..+..||+|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++.
T Consensus 3 m~I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~ 75 (333)
T 1b63_A 3 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIER-------GGAKLIRIRDNGCGIKKDELALALA 75 (333)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGHHHHHS
T ss_pred CcceECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHCCCCeEEEEEEe-------CCceEEEEEEcCCCcCHHHHHHhhh
Confidence 55888999999999 445667999999999999999999999998872 2346899999999999999999874
Q ss_pred -cccCCCCCC-----CCCcccccCceeeeeccccCceEEEEEeeCCC
Q 005166 269 -FGHKQPDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADS 309 (710)
Q Consensus 269 -fG~s~k~~~-----d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~ 309 (710)
|+++ |... ....+|.+|+|+.+. ..++ +++|.||+.+.
T Consensus 76 ~~~ts-K~~~~~d~~~~~~~G~~G~gl~si-~~vs-~l~v~s~~~~~ 119 (333)
T 1b63_A 76 RHATS-KIASLDDLEAIISLGFRGEALASI-SSVS-RLTLTSRTAEQ 119 (333)
T ss_dssp TTCCS-SCCSHHHHHTCCSSCCSSCHHHHH-HTTS-EEEEEEECTTC
T ss_pred ccccc-CccccchhhhccccCccccchhhh-hcCC-cEEEEEecCCC
Confidence 5554 3211 235789999999554 3366 79999999875
No 17
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.56 E-value=2.3e-16 Score=140.76 Aligned_cols=58 Identities=19% Similarity=0.540 Sum_probs=49.5
Q ss_pred cCCCCCCCceeeCccchhhccCCCCCC-CCCCCCCceecCCCC--CCCCCCCcccccCCce
Q 005166 593 GALYKPDQEWVQCNKCRKWRMLDPGFD-TKSLPVEWFCYMKPF--EGLCDLPEQKVDAGVV 650 (710)
Q Consensus 593 ~~~~~~~~~WVQCd~C~KWR~Lp~~~~-~~~lp~~W~C~~n~~--~~sC~~pEe~~~~~~~ 650 (710)
+..+.+..+|||||+|+|||+||.++. ...+|++|+|+||++ +++|++|||.++..+.
T Consensus 19 ~~~~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~D~~~nsCs~PEE~~~~ei~ 79 (100)
T 2l7p_A 19 EDSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNSDKRFADCSKSQEMSNEEIN 79 (100)
T ss_dssp SSCCSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSSCSSSCSTTSCCSSCHHHHH
T ss_pred CCCCCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCCCCCCCCCCCccCCCHHHHH
Confidence 344667889999999999999998765 356899999999996 7999999999887654
No 18
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.38 E-value=4.5e-13 Score=145.36 Aligned_cols=140 Identities=18% Similarity=0.174 Sum_probs=92.1
Q ss_pred ceecCCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-
Q 005166 191 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY- 268 (710)
Q Consensus 191 ~~~~v~p~~L~~l-st~~~~~~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~- 268 (710)
.|..+++..++.+ +...+..|..+|.|||+||+||+|+.|.|.+. ..+...|+|.|||+||+++++..++.
T Consensus 5 ~I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~-------~~~~~~i~V~DnG~Gi~~~~l~~~~~~ 77 (367)
T 3h4l_A 5 QIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFK-------DYGLESIECSDNGDGIDPSNYEFLALK 77 (367)
T ss_dssp --------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEE-------TTTTSEEEEEECSCCCCGGGTTTTTCC
T ss_pred cceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEE-------eCCEEEEEEEECCCCcChhHhccceec
Confidence 3778899999999 55666899999999999999999999999886 34567999999999999999988765
Q ss_pred cccCCC-CCCC---CCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcCcccCCCCcEEEEE
Q 005166 269 FGHKQP-DADD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 343 (710)
Q Consensus 269 fG~s~k-~~~d---~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi~~~~~~Gt~I~l~ 343 (710)
|.++.. ..++ ....|..|.|+.+. ..++ +++|.||+.+ ..++.+..-..|. +..+.+.-...||+|++.
T Consensus 78 ~~tsK~~~~~Dl~~i~t~GfrGeaL~Si-~avS-~l~V~sr~~~--~~~~~~~~~~~G~--~~~~~~~~~~~GTtV~v~ 150 (367)
T 3h4l_A 78 HYTSKIAKFQDVAKVQTLGFRGEALSSL-CGIA-KLSVITTTSP--PKADKLEYDMVGH--ITSKTTTSRNKGTTVLVS 150 (367)
T ss_dssp EEC---------CCCCEEEETTHHHHHH-HHSS-EEEEEEESST--TCEEEEEECTTCC--EEEEEEECCSSEEEEEEE
T ss_pred cccCcCCchhhhhhhhccCccchHHHHh-hccC-EEEEEEEECC--CCEEEEEEcCCCc--EEeeccccCCCCeEEEEc
Confidence 333322 2223 34557778888544 4477 6999999988 4555554311232 222222334579999884
No 19
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.32 E-value=2.3e-12 Score=139.77 Aligned_cols=140 Identities=17% Similarity=0.237 Sum_probs=86.5
Q ss_pred ceecCCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-
Q 005166 191 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY- 268 (710)
Q Consensus 191 ~~~~v~p~~L~~l-st~~~~~~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~- 268 (710)
.|..+++...+.+ +...+..+..+|+|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++.
T Consensus 14 ~I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~-------~~~~~I~V~DnG~Gi~~~~l~~~f~~ 86 (365)
T 1h7s_A 14 AIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKD-------YGVDLIEVSDNGCGVEEENFEGLTLK 86 (365)
T ss_dssp ---------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGSGGGGC-
T ss_pred hhccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCcEEEEEEECCCCcCHHHHHHHhhh
Confidence 4778899999888 446668999999999999999999999998862 2456899999999999999998764
Q ss_pred cccCCCC-CCCC---CcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeec-CCCceEEEcCcccCCCCcEEEEE
Q 005166 269 FGHKQPD-ADDP---NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLN-QGKDNLEIPIVSYYRKGQFMELD 343 (710)
Q Consensus 269 fG~s~k~-~~d~---~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~-~g~~~i~VPi~~~~~~Gt~I~l~ 343 (710)
|.++... ..+. ...|.+|+|+.+.+ .++ +++|.||+.+. ..++.+. |. .| .+....+.-..+||+|++.
T Consensus 87 ~~tsK~~~~~dl~~i~s~G~rG~gl~si~-~vs-~v~v~t~~~~~-~~~~~~~-~~~~G--~~~~~~~~~~~~GT~V~v~ 160 (365)
T 1h7s_A 87 HHTSKIQEFADLTQVETFGFRGEALSSLC-ALS-DVTISTCHASA-KVGTRLM-FDHNG--KIIQKTPYPRPRGTTVSVQ 160 (365)
T ss_dssp ---------CCTTCSEEESSSSSHHHHHH-HHS-EEEEEEECTTC-SSCEEEE-ECTTS--CEEEEEECCCCSEEEEEEE
T ss_pred ccccccccccchhcccccCCCCchhhhhh-hhc-cEEEEEccCCC-cceEEEE-EcCCC--ceEeecccCCCCCcEEEEe
Confidence 5444221 1222 34788899985444 477 99999999875 3344443 32 23 2322222334579999885
No 20
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.30 E-value=4.3e-12 Score=136.71 Aligned_cols=141 Identities=20% Similarity=0.282 Sum_probs=98.0
Q ss_pred cceecCCHHHHHHh-hccccCCHHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh
Q 005166 190 KNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 268 (710)
Q Consensus 190 ~~~~~v~p~~L~~l-st~~~~~~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~ 268 (710)
..|..+++..++.+ +...+..|..+|.|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++.
T Consensus 7 ~~I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~-------~~~~~I~V~DnG~GI~~~~l~~~~~ 79 (348)
T 3na3_A 7 GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKE-------GGLKLIQIQDNGTGIRKEDLDIVCE 79 (348)
T ss_dssp CCCCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGGGTTTS
T ss_pred cccccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEe-------CCEEEEEEEECCcCcChHHhhhhhc
Confidence 34788999999999 556668999999999999999999999999862 3456799999999999999988875
Q ss_pred cccCCCC--CCC---CCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcC-cccCCCCcEEEE
Q 005166 269 FGHKQPD--ADD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSYYRKGQFMEL 342 (710)
Q Consensus 269 fG~s~k~--~~d---~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi-~~~~~~Gt~I~l 342 (710)
..++.|. .++ ....|.+|.|+.+. ..++ +++|.||+.+.. .++.+. |..|. +..+. +.-...||+|++
T Consensus 80 ~~~tsK~~~~~dl~~i~s~GfrGeaL~Si-~avs-~l~v~sr~~~~~-~~~~~~-~~~G~--~~~~~~~~~~~~GTtV~v 153 (348)
T 3na3_A 80 RFTTSKLQSFEDLASISTYGFRGEALASI-SHVA-HVTITTKTADGK-CAYRAS-YSDGK--LKAPPKPCAGNQGTQITV 153 (348)
T ss_dssp TTCCSSCCCC---------CCTTCHHHHH-HHSS-EEEEEEECTTCS-SEEEEE-EETTE--ESSCCEEECCCSEEEEEE
T ss_pred cccccccCcchhhhccccCCcCChHHHHh-hccc-EEEEEEEECCCC-ceEEEE-EeCCE--EeeeeeEecCCCCcEEEE
Confidence 3333332 122 35679999999443 3476 799999998863 344332 22322 11111 112457999987
Q ss_pred E
Q 005166 343 D 343 (710)
Q Consensus 343 ~ 343 (710)
.
T Consensus 154 ~ 154 (348)
T 3na3_A 154 E 154 (348)
T ss_dssp E
T ss_pred C
Confidence 5
No 21
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.90 E-value=1.8e-08 Score=110.21 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcccccC----CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHh--------hhh-cccCCCC--
Q 005166 211 IFGAIAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD-- 275 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~--------~l~-fG~s~k~-- 275 (710)
+...|.|||+||+|+. ++.|.|.+.. ...|+|.|||.||+.+++.. +|. |....+-
T Consensus 33 ~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~---------~~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~ 103 (390)
T 1kij_A 33 YHHLFKEILDNAVDEALAGYATEILVRLNE---------DGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQ 103 (390)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGG
T ss_pred HHHHHHHHHHHHHHHhhhCCCCEEEEEEEc---------CCEEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccC
Confidence 5678999999999995 8888888752 24899999999999998755 443 2221111
Q ss_pred CCCCCcccccCceeeeeccccCceEEEEEeeCC
Q 005166 276 ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTAD 308 (710)
Q Consensus 276 ~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~ 308 (710)
.......|..|+|++. ...++..+.|.|++.+
T Consensus 104 ~~~~~s~G~~G~Gls~-v~als~~~~v~t~~~g 135 (390)
T 1kij_A 104 GAYKVSGGLHGVGASV-VNALSEWTVVEVFREG 135 (390)
T ss_dssp SSCCCCSCSSTTSHHH-HHHTEEEEEEEEEETT
T ss_pred ccccccCCCCCcceee-ecccccceEEEEecCC
Confidence 0112356889999954 4458889999999765
No 22
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.89 E-value=6.1e-08 Score=106.01 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=70.2
Q ss_pred CHHHHHHHHHhccccc---C-CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhH--------Hhhhh-cccCCCCC
Q 005166 210 WIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDA 276 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA---~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl--------~~~l~-fG~s~k~~ 276 (710)
-+...+.||||||+|| | |+.|.|.|.. ...|+|.|||.||+.++. .-+|. +..+.|-.
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~ 104 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 104 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEECT---------TSCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSS
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC---------CCEEEEEECCCCcccCcccccCcchHHHhheeccccCCcC
Confidence 4778999999999999 5 9999998862 238999999999999883 33443 32222311
Q ss_pred --CCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCC
Q 005166 277 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG 322 (710)
Q Consensus 277 --~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g 322 (710)
.-...-|..|+|+. +.-.++..++|.|++.+. .+.+.|..|
T Consensus 105 ~~~~~vSgGl~GvGls-~vnalS~~l~v~~~r~g~----~~~~~~~~G 147 (391)
T 1ei1_A 105 DNSYKVSGGLHGVGVS-VVNALSQKLELVIQREGK----IHRQIYEHG 147 (391)
T ss_dssp SSSCSSCSCCSSCHHH-HHHHTEEEEEEEEEETTE----EEEEEEETT
T ss_pred CCcccccCCccccchH-HHHHhcCeEEEEEEeCCc----EEEEEEcCC
Confidence 12346788999994 444588899999997662 344555433
No 23
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.87 E-value=4.1e-09 Score=105.44 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=70.4
Q ss_pred HHHHHHHHHhccccc---C-CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhH--------Hhhhh-cccCCCCCC
Q 005166 211 IFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDAD 277 (710)
Q Consensus 211 ~~~AIaELIDNS~DA---~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl--------~~~l~-fG~s~k~~~ 277 (710)
+..++.|||+||+|| | |+.|.|.|.. ...|+|.|||.||+.+++ .-++. ...+.|-..
T Consensus 18 ~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~---------~g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~ 88 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALAGHAKRVDVILHA---------DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN 88 (201)
T ss_dssp THHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--------
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEEEeC---------CCEEEEEECCCCcCcccccccCcchhheeeeeeccccCcCC
Confidence 468999999999999 5 9999998861 238999999999999884 23232 222222111
Q ss_pred --CCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEEcC-ccc--CCCCcEEEEEe
Q 005166 278 --DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSY--YRKGQFMELDT 344 (710)
Q Consensus 278 --d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~VPi-~~~--~~~Gt~I~l~~ 344 (710)
-....|..|.|+.+ ...|+..++|.|++.+. .+.+.|..|...-.++. ... ...||+|++..
T Consensus 89 ~~~~~s~GfrGeglss-inalS~~l~v~t~~~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~P 155 (201)
T 3fv5_A 89 KNYQFSGGLHGVGISV-VNALSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWP 155 (201)
T ss_dssp -------------CHH-HHHTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEE
T ss_pred CcccccCcccceecch-hhcccceEEEEEEecCc----eEEEEEeCCEEcccceecccCCCCCCCeEEEEEE
Confidence 13467889999954 44588899999998763 25566655432212221 122 45799998854
No 24
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.84 E-value=6.5e-08 Score=105.04 Aligned_cols=97 Identities=8% Similarity=-0.012 Sum_probs=62.0
Q ss_pred CHHHHHHHHHhccccc----CCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCccccc
Q 005166 210 WIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 285 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~f 285 (710)
-|..++.||||||+|| +|+.|+|.|.. ...|+|.|||.||+. |+.-.+.-|.+-.........+.-
T Consensus 30 gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~---------~g~I~V~DnGrGIp~-e~v~~lhagsKf~~~~~~~~y~vs 99 (369)
T 3cwv_A 30 GLHHLVYFLLDVAYEEARRGECRDVVLEVGG---------DGSIALFCTSRTVTA-ENLVRVATGAGFLGRPPGDGWGWD 99 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEEEESSCCH-HHHHHHHTTTTGGGSSCCCSTTTT
T ss_pred hHHHHHHHHHhhhHhHHhhCCCCEEEEEEeC---------CCEEEEEECCCCcCH-hHeeeeecCCCcCCCccccccccc
Confidence 4678999999999998 79999999862 238999999999999 432222222221110000122222
Q ss_pred CceeeeeccccCceEEEEEeeCCCCceeEEEEeecCC
Q 005166 286 GVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG 322 (710)
Q Consensus 286 GiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g 322 (710)
| |. ++.-.|+..++|.|++.+. .+.+.|..|
T Consensus 100 G-Gl-s~vnalSs~l~v~t~r~g~----~~~~~~~~G 130 (369)
T 3cwv_A 100 S-ML-VVSLALSSRYQVDIWADGR----QWRVMGEHG 130 (369)
T ss_dssp S-SH-HHHHHTEEEEEEEEEETTE----EEEEEEETT
T ss_pred C-HH-HHHHHhhceEEEEEEECCC----EEEEEEeCC
Confidence 5 76 4444588999999998763 234455433
No 25
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.70 E-value=4.3e-08 Score=107.53 Aligned_cols=89 Identities=17% Similarity=0.213 Sum_probs=64.7
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhh--------HHhhhh-cccCCCC
Q 005166 210 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPD 275 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~-----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ed--------l~~~l~-fG~s~k~ 275 (710)
-+...+.||||||+||+ |+.|.|.|.. +...|+|.|||.||+.++ ++-+|. ...+.|-
T Consensus 52 GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~--------~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf 123 (400)
T 1zxm_A 52 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDP--------ENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNY 123 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCC
T ss_pred hHHHHHHHHHhhHHhHHhhcCCCceEEEEEEC--------CCCEEEEEECCCcccCccccccCccchhheeeeecccCCC
Confidence 36688999999999997 8999998872 126999999999999887 333443 2222221
Q ss_pred C--CCCCcccccCceeeeeccccCceEEEEEeeC
Q 005166 276 A--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTA 307 (710)
Q Consensus 276 ~--~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~ 307 (710)
. .-....|..|+|. ++.-.|+..++|.++..
T Consensus 124 ~~~~ykvSgGlhGvGl-svVnAlS~~l~v~v~~~ 156 (400)
T 1zxm_A 124 DDDEKKVTGGRNGYGA-KLCNIFSTKFTVETASR 156 (400)
T ss_dssp CGGGCCCCSCCSSCHH-HHHHHTEEEEEEEEEET
T ss_pred CCCcccccCCccccce-eeeEEeccceEEEEecC
Confidence 1 1234779999999 44455889999999874
No 26
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.61 E-value=1.2e-07 Score=103.82 Aligned_cols=287 Identities=14% Similarity=0.058 Sum_probs=157.7
Q ss_pred HHHHHHHHhccccc---C-CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhh--------HHhhhh-cccCCCCC--
Q 005166 212 FGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPDA-- 276 (710)
Q Consensus 212 ~~AIaELIDNS~DA---~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ed--------l~~~l~-fG~s~k~~-- 276 (710)
..++.|||+||+|| | |+.|.|.|.. ...|+|.|||.||+.++ +..+|. +..+.|-.
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~ 103 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHAKRVDVILHA---------DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK 103 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEec---------CCEEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCC
Confidence 57899999999999 4 9999998862 23899999999999988 455553 22222211
Q ss_pred CCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCceEEE-cCcccC--CCCcEEEEEecCcccchhh
Q 005166 277 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI-PIVSYY--RKGQFMELDTVVQSEATAK 353 (710)
Q Consensus 277 ~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~~i~V-Pi~~~~--~~Gt~I~l~~~~~~e~~~~ 353 (710)
.-....|..|+|+. +.-.|+..++|.|++.+. .+.+.|..|.-.-.+ ++.... ..||+|++...... +
T Consensus 104 ~~~~sgGl~GvGls-~vnalS~~l~v~~~r~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~Pd~~~-F--- 174 (390)
T 1s16_A 104 NYQFSGGLHGVGIS-VVNALSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETF-F--- 174 (390)
T ss_dssp SCSSCSCCSSCHHH-HHHHTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEECGGG-S---
T ss_pred cccccCCccccchH-HHHHhhcccEEEEEECCc----EEEEEEeCCcccccceecccccCCCCceEEEEEECccc-c---
Confidence 12346788999994 444588899999997652 355666555211111 122333 57999887643221 1
Q ss_pred hhHHhHhhhCCCchhhHHHhhccccCCCCCcEEEEEeccCCCCceeeeccCCCCCCCCCCcccceeecccccCCCCcccc
Q 005166 354 YNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQ 433 (710)
Q Consensus 354 ~~L~~I~kySpF~s~pI~e~~~~~~~~~~GT~IiI~nL~r~~~~~eLdF~~d~~~~~~f~~~DI~i~~~~~~~~~~q~~~ 433 (710)
+-..|...-|.+.+..+.....|.+|.+.+-+. +.+..|
T Consensus 175 -------~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~---~~~~~f------------------------------- 213 (390)
T 1s16_A 175 -------DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEIN---NTEQRW------------------------------- 213 (390)
T ss_dssp -------SCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTT---TEEEEE-------------------------------
T ss_pred -------CcccccHHHHHHHHHHHHhcCCCcEEEEEeCCC---ceeEEE-------------------------------
Confidence 001122112222222222224677777765431 000111
Q ss_pred cCcchhhHHHHHhhhhcCCCeEEEEcCeEecccccccccCcceeecccccceeEEEEEcccccccccccceEEEEEcCee
Q 005166 434 KVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRL 513 (710)
Q Consensus 434 ~~~~~ySLRaYlsiLYL~PrmkI~LnG~kV~~~~i~~~L~~~~v~~~~~~~~~V~it~G~~~~e~~~~~~Gi~vY~nnRL 513 (710)
.+.-.|++|+..|+=... .+....+ .+..+..+..|++.+..... .....++.|.|||-
T Consensus 214 --~~~gGl~~~v~~l~~~~~--------~~~~~~i--------~~~~~~~~~~ve~a~~~~~~---~~~~~~~sFvN~i~ 272 (390)
T 1s16_A 214 --CYQDGLNDYLAEAVNGLP--------TLPEKPF--------IGNFAGDTEAVDWALLWLPE---GGELLTESYVNLIP 272 (390)
T ss_dssp --CCSSCHHHHHHHHHTTSC--------CEEEEEE--------EEEEECSSEEEEEEEEECTT---CCCCCEEEEETTEE
T ss_pred --EcCCcHHHHHHHHhCCCc--------ccCCCcE--------EEEEeeCCEEEEEEEEeccC---CCCceEEEEECCEe
Confidence 111157888887652211 0000011 01111112345555555211 12356889999998
Q ss_pred eeee-e------------------eec--c---cccCCCCCceEEEEEecCcccccCCCccccccCccCccCchHHHHHH
Q 005166 514 IEAY-K------------------RVG--G---MIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLE 569 (710)
Q Consensus 514 Ik~~-~------------------kVg--~---q~~~~~~grGVIGVve~~~l~~~~~~~~~pthnKQdFe~t~~y~~L~ 569 (710)
+.-. - +-+ . .+.+..--.|+..||.+- +++| .|+ ..+|.---........+
T Consensus 273 t~~GGTH~~gfr~alt~~i~~~~~~~~~~k~~~~l~~~dvregl~avisvk--i~~P--~Fe-gQTK~kL~~~e~~~~v~ 347 (390)
T 1s16_A 273 TMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVK--MQDP--QFA-GQTKERLSSRQCAAFVS 347 (390)
T ss_dssp CTTCBHHHHHHHHHHHHHHHHHHHHTTCSCTTCCCCHHHHHTTEEEEEEEE--ESSC--CBS-STTCCCBCCTHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhCcCccCCccCHHHHhhccEEEEEee--cCCC--Ccc-ccccchhcChhHHHHHH
Confidence 8642 0 000 0 011111124888888772 3433 233 56776666777777788
Q ss_pred HHHHHHHHHHHhhc
Q 005166 570 EWLGKVADEYWDNK 583 (710)
Q Consensus 570 ~~L~e~~~eYW~~~ 583 (710)
..+.+.+..|..+|
T Consensus 348 ~~v~~~l~~~l~~n 361 (390)
T 1s16_A 348 GVVKDAFILWLNQN 361 (390)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHC
Confidence 88899998888654
No 27
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.61 E-value=7e-08 Score=97.88 Aligned_cols=120 Identities=18% Similarity=0.172 Sum_probs=75.7
Q ss_pred CHHHHHHHHHhccccc----CCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhH--------Hhhhh-cccCCCCC
Q 005166 210 WIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDA 276 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl--------~~~l~-fG~s~k~~ 276 (710)
-+..++.|||+||+|+ .|+.|.|.|.. ...|+|.|||.||+.+.. .-+|. ...+.|-.
T Consensus 35 gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~---------~g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd 105 (220)
T 4duh_A 35 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 105 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCEEEEEECT---------TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCC
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC---------CCcEEEEECCcCcccccccccCcchhhheeeecccCCCcC
Confidence 3678999999999999 89999998862 247999999999999863 22332 22222211
Q ss_pred --CCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCc--eE-EEcCcccCCCCcEEEEEec
Q 005166 277 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NL-EIPIVSYYRKGQFMELDTV 345 (710)
Q Consensus 277 --~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~--~i-~VPi~~~~~~Gt~I~l~~~ 345 (710)
.-...-|..|+|. ++.-.|+..++|.+++.+. .+.+.|..|.. .+ .++ .-...||+|+....
T Consensus 106 ~~~yk~SgGlhGvG~-svvNAlS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~~g--~~~~~GT~V~F~Pd 172 (220)
T 4duh_A 106 DNSYKVSGGLHGVGV-SVVNALSQKLELVIQREGK----IHRQIYEHGVPQAPLAVTG--ETEKTGTMVRFWPS 172 (220)
T ss_dssp TTC--------CCCH-HHHHHTEEEEEEEEEETTE----EEEEEEETTEESSSCEEEE--ECSCCEEEEEEEEC
T ss_pred CCccccccCccceec-chhcccccceEEEEEECCE----EEEEEecCCcCcCCceecc--ccCCCCcEEEEEEC
Confidence 1246778999999 4445589999999998773 34566654421 11 111 22457999887643
No 28
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.56 E-value=1.7e-07 Score=95.49 Aligned_cols=121 Identities=20% Similarity=0.193 Sum_probs=77.3
Q ss_pred HHHHHHHHHhccccc----CCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhh-------HHhhhh-cccCCCCC--
Q 005166 211 IFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD-------VVRMTY-FGHKQPDA-- 276 (710)
Q Consensus 211 ~~~AIaELIDNS~DA----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ed-------l~~~l~-fG~s~k~~-- 276 (710)
+...+.|||+||+|+ .++.|.|.|.. ...++|.|||.||+.++ +.-+|. +..+.|-.
T Consensus 41 l~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~---------~g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~ 111 (226)
T 4emv_A 41 LHHLVWEIVDNAVDEALSGFGDRIDVTINK---------DGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQG 111 (226)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC--------
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEEEeC---------CCeEEEEEcCCCccccccccCceehheeEEeecccCccCcc
Confidence 568899999999999 78999988762 24899999999999988 444453 22222211
Q ss_pred CCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCC-Cc--eEE-EcCcccCCCCcEEEEEec
Q 005166 277 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG-KD--NLE-IPIVSYYRKGQFMELDTV 345 (710)
Q Consensus 277 ~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g-~~--~i~-VPi~~~~~~Gt~I~l~~~ 345 (710)
.-...-|..|+|. ++.-.|+..++|.+++.+. .+.+.|..| .. .+. +....-...||+|+....
T Consensus 112 ~yk~SgGlhGvG~-svvNALS~~l~v~v~r~g~----~~~q~f~~Gg~~~~~l~~ig~~~~~~~GT~V~F~PD 179 (226)
T 4emv_A 112 GYKTSGGLHGVGS-SVVNALSSWLEVEITRDGA----VYKQRFENGGKPVTTLKKIGTALKSKTGTKVTFMPD 179 (226)
T ss_dssp ------CGGGCCH-HHHHHTEEEEEEEEEETTE----EEEEEEETTTEESSCSEEEEECCTTCCEEEEEEEEC
T ss_pred ceEeccccccccc-hhhhhcccceEEEEEeCCc----EEEEEECCCCEEcCCceEecccCCCCCCeEEEEEEC
Confidence 1246779999999 4555589999999998773 345666544 21 111 111111457999887654
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.37 E-value=9.1e-07 Score=98.96 Aligned_cols=96 Identities=22% Similarity=0.342 Sum_probs=67.7
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-cccCCCCCCCCCccc
Q 005166 210 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 283 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~-fG~s~k~~~d~~~IG 283 (710)
.+..+|.|||+||+||++. .|.|.+.... ...+...|+|.|||.||+.+++..++. |..+.+. ......|
T Consensus 32 ~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~---~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 107 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLID---DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 107 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEE---TTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECC---CcCcEEEEEEEECCCCCCHHHHHHHhccccccccc-ccccCCC
Confidence 3678999999999999876 6777776310 012456799999999999999999875 4343332 1234568
Q ss_pred ccCceeeeecc---ccCce-EEEEEeeCCC
Q 005166 284 RFGVGFKTGAM---RLGKD-ALVLTQTADS 309 (710)
Q Consensus 284 ~fGiGfKsA~m---~lg~~-v~V~Sk~~~~ 309 (710)
..|+|+..+.. ..|.. +.|.|+..+.
T Consensus 108 g~GLGL~iv~~l~~~~gG~~i~v~S~~~~g 137 (471)
T 1mu5_A 108 MYGLGVKAAVLYSQMHQDKPIEIETSPVNS 137 (471)
T ss_dssp SCTTTHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred CceeeHHHHHHHHHHhCCCceeEEEecCCC
Confidence 89999965432 23445 9999987764
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.31 E-value=1.2e-06 Score=99.19 Aligned_cols=96 Identities=22% Similarity=0.342 Sum_probs=68.8
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-cccCCCCCCCCCccc
Q 005166 210 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 283 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~-fG~s~k~~~d~~~IG 283 (710)
.+..+|.|||+||+||++. .|.|.+.... ...+...|+|.|||.||+.+++..++. |..+.+. ......|
T Consensus 31 ~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~---~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 106 (530)
T 2zbk_B 31 ALYQTVRELIENSLDATDVHGILPNIKITIDLID---DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 106 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEE---TTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECC---CcCceEEEEEEECCCCCCHHHHHHHhccccccCCc-ccccCCC
Confidence 3678999999999999876 7888876410 012456799999999999999998875 4344332 1235678
Q ss_pred ccCceeeeecc---ccCce-EEEEEeeCCC
Q 005166 284 RFGVGFKTGAM---RLGKD-ALVLTQTADS 309 (710)
Q Consensus 284 ~fGiGfKsA~m---~lg~~-v~V~Sk~~~~ 309 (710)
..|+|+..+.. ..|.. +.|.|+..+.
T Consensus 107 g~GLGLsiv~~l~~~~gG~~I~V~S~~~~g 136 (530)
T 2zbk_B 107 MYGLGVKAAVLYSQMHQDKPIEIETSPVNS 136 (530)
T ss_dssp SSSSHHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred CccchHHHHHHHHHHhCCCceEEEEecCCC
Confidence 89999964432 23444 9999987664
No 31
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.27 E-value=9.2e-07 Score=97.09 Aligned_cols=120 Identities=19% Similarity=0.178 Sum_probs=70.2
Q ss_pred HHHHHHHHhccccc----CCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhH--------Hhhhh-cccCCCC--C
Q 005166 212 FGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPD--A 276 (710)
Q Consensus 212 ~~AIaELIDNS~DA----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl--------~~~l~-fG~s~k~--~ 276 (710)
...+.||||||+|+ .++.|+|.|.. ...|+|.|||.||+.+.. .-+|. +..+.|- .
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i~~---------dgsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~ 122 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTLYK---------DGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNR 122 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC---------
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEEeC---------CCeEEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCC
Confidence 56899999999999 79999998852 248999999999998763 22332 1111221 1
Q ss_pred CCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCc--eEE-EcCcccCCCCcEEEEEec
Q 005166 277 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLE-IPIVSYYRKGQFMELDTV 345 (710)
Q Consensus 277 ~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~--~i~-VPi~~~~~~Gt~I~l~~~ 345 (710)
.-...-|..|+|. ++.-.|+..++|.+++++. .+.+.|..|.. .+. +....-...||+|+....
T Consensus 123 ~ykvSgGlhGvG~-svVNALS~~l~v~v~rdGk----~~~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD 189 (408)
T 3lnu_A 123 NYTFSGGLHGVGV-SVVNALSTKVELFIKREGS----EHRMEFRDGNAASKLEVVGTVGKKNTGTRLRFWAD 189 (408)
T ss_dssp -----------CH-HHHHHTEEEEEEEEEETTE----EEEEEEETTEECSCCEEEEECCTTCCEEEEEEEEC
T ss_pred ceeecCCcccccc-ceehhccCeEEEEEEECCE----EEEEEECCCEECCCceEeccCcCCCCCcEEEEEEC
Confidence 1235678999999 4555689999999998773 35566754421 111 111111357898887643
No 32
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.13 E-value=1.9e-06 Score=99.26 Aligned_cols=131 Identities=16% Similarity=0.254 Sum_probs=77.0
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhh-cccCCCCCCCCCccc
Q 005166 210 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 283 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~-fG~s~k~~~d~~~IG 283 (710)
.+..+|.|||+||+||+++ .|.|.+... ..+...|+|.|||.||+.+++..++. |.++.+........|
T Consensus 37 ~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~-----~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~G 111 (621)
T 2q2e_B 37 SLITTVKEAVDNALDACEEAGILPDILVQVERT-----GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRG 111 (621)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEE-----TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEC-----CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCC
Confidence 3568999999999999875 677766531 11345799999999999999999875 323222111224458
Q ss_pred ccCceeeeecc---ccCce-EEEEEeeCCCCceeEEEEee--cCCCceE--EEcCcccCCCCcEEEEEec
Q 005166 284 RFGVGFKTGAM---RLGKD-ALVLTQTADSRSIAFLSQSL--NQGKDNL--EIPIVSYYRKGQFMELDTV 345 (710)
Q Consensus 284 ~fGiGfKsA~m---~lg~~-v~V~Sk~~~~~s~~~ls~sf--~~g~~~i--~VPi~~~~~~Gt~I~l~~~ 345 (710)
..|+|+..+.. .++.. +.|.|+..+......+...+ ..+.... .-+.+.-..+||.|++.+.
T Consensus 112 g~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~f~ 181 (621)
T 2q2e_B 112 QQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELEMR 181 (621)
T ss_dssp SSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEECS
T ss_pred CceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEEec
Confidence 89999964332 22333 78999877632222222211 1221111 1111122347999988754
No 33
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.03 E-value=9.8e-06 Score=80.84 Aligned_cols=145 Identities=19% Similarity=0.237 Sum_probs=83.2
Q ss_pred HHHHHHHHHhccccc---C-CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccC
Q 005166 211 IFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFG 286 (710)
Q Consensus 211 ~~~AIaELIDNS~DA---~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fG 286 (710)
+...+.|||+||+|+ | |+.|.|.|.. ...++|.|||.||+.+.-. .+ +. .....+ |+
T Consensus 32 l~~~v~Elv~NsiD~~~ag~~~~I~V~i~~---------~g~i~V~DnG~Gip~~~h~------~~-~~-~~~e~i--~t 92 (198)
T 3ttz_A 32 LHHLVWEIVDNSIDEALAGYANQIEVVIEK---------DNWIKVTDNGRGIPVDIQE------KM-GR-PAVEVI--LT 92 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEEEEEEEG---------GGEEEEEECSSCCCCSBCT------TT-SS-BHHHHH--HH
T ss_pred hHHHHHHHHHHHHhHHhcCCCcEEEEEEeC---------CCeEEEEECCCCccccccC------cC-CC-cccccc--ce
Confidence 668899999999994 7 8999999872 2489999999999986210 00 00 000111 22
Q ss_pred ceeeeeccccCceEEEEEeeCCCCceeEEEEeecCCCc--eE-EEcCcccCCCCcEEEEEecCcccchhhhhHHhHhhhC
Q 005166 287 VGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NL-EIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFS 363 (710)
Q Consensus 287 iGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g~~--~i-~VPi~~~~~~Gt~I~l~~~~~~e~~~~~~L~~I~kyS 363 (710)
. ++.-.|+..++|.+++++. .+.+.|..|.- .. .++ .....||+|++...... +. +-.
T Consensus 93 --~-SvVNALS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~i~--~~~~~GT~V~F~Pd~~i-F~---------~~~ 153 (198)
T 3ttz_A 93 --S-SVVNALSQDLEVYVHRNET----IYHQAYKKGVPQFDLKEVG--TTDKTGTVIRFKADGEI-FT---------ETT 153 (198)
T ss_dssp --T-CHHHHTEEEEEEEEEETTE----EEEEEEETTEESSCCEEEE--ECSCCEEEEEEEECTTT-CC---------SCC
T ss_pred --e-EehhhhcCeEEEEEEECCc----EEEEEEeCCEECCCceecc--CCCCCCcEEEEEECHHH-hc---------cCC
Confidence 1 3333577899999998874 35566654421 11 122 22467999887643221 10 111
Q ss_pred CCchhhHHHhhccccCCCCCcEEEEEeccC
Q 005166 364 PFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 393 (710)
Q Consensus 364 pF~s~pI~e~~~~~~~~~~GT~IiI~nL~r 393 (710)
-|...-|...+..+.--..|.+|.+.+-+.
T Consensus 154 ~~~~~~l~~rlrelA~ln~gv~i~l~der~ 183 (198)
T 3ttz_A 154 VYNYETLQQRIRELAFLNKGIQITLRDERD 183 (198)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCEEEEEECSS
T ss_pred ccCHHHHHHHHHHHhhcCCCCEEEEEeecC
Confidence 222222222222222225789998887653
No 34
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.97 E-value=1.5e-05 Score=87.83 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcccccC-----CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHh--------hhh---cccCCC
Q 005166 211 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY---FGHKQP 274 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~-----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~--------~l~---fG~s~k 274 (710)
+...+.|+||||+|+. ++.|.|.|.. +...|+|.|||.||+.+.... +|. -|.+-.
T Consensus 65 L~~lv~EivdNaiDe~~~~g~~~~I~V~i~~--------d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd 136 (418)
T 1pvg_A 65 LFKIFDEILVNAADNKVRDPSMKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYD 136 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCC
T ss_pred HHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC--------CCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccC
Confidence 5578999999999985 6899998872 226899999999998776322 232 122211
Q ss_pred CCCCCCcccccCceeeeeccccCceEEEEEeeC-CCCceeEEEEeecCCCceEEEc-Ccc--cCCCCcEEEEEec
Q 005166 275 DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA-DSRSIAFLSQSLNQGKDNLEIP-IVS--YYRKGQFMELDTV 345 (710)
Q Consensus 275 ~~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~-~~~s~~~ls~sf~~g~~~i~VP-i~~--~~~~Gt~I~l~~~ 345 (710)
...-...-|..|+|. ++.-.|+..+.|.+++. +. -.+.++|..|.....-| +.. ....||+|+....
T Consensus 137 ~~~ykvSGGLhGVG~-SvVNALS~~l~V~v~r~rdG---k~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~PD 207 (418)
T 1pvg_A 137 DDEKKVTGGRNGYGA-KLCNIFSTEFILETADLNVG---QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPD 207 (418)
T ss_dssp TTSCCCCSCCSSCHH-HHHHHTEEEEEEEEEETTTT---EEEEEEEETTTTEECCCEEEECCSSCCEEEEEEEEC
T ss_pred CCceeccCCccceee-eeeeeccceEEEEEEECCCC---cEEEEEEEcCCCccCCCeecccCCCCCceEEEEEEC
Confidence 111234678999999 56666999999999862 22 23556775442111111 111 1347898877654
No 35
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.68 E-value=7.5e-05 Score=68.30 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCceee
Q 005166 211 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 290 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGfK 290 (710)
+..++.+||+||+.+....|.|.+.. ..+.-.|.|.|||.||+.+++.+++.-..+.+.. .+..|+|+.
T Consensus 45 l~~il~nLl~NAi~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~-----~~g~GlGL~ 113 (152)
T 1id0_A 45 FVEVMGNVLDNACKYCLEFVEISARQ------TDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL-----RPGQGVGLA 113 (152)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEEEE------CSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC-----CTTCCSCHH
T ss_pred HHHHHHHHHHHHHHhCcCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHHHhccceeccCC-----CCCcccCHH
Confidence 55789999999999987777776653 3456689999999999999998887644333211 135688875
Q ss_pred eec---cccCceEEEEEee
Q 005166 291 TGA---MRLGKDALVLTQT 306 (710)
Q Consensus 291 sA~---m~lg~~v~V~Sk~ 306 (710)
.+- -.+|.++.+.+..
T Consensus 114 i~~~~~~~~gG~i~~~~~~ 132 (152)
T 1id0_A 114 VAREITEQYEGKIVAGESM 132 (152)
T ss_dssp HHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHcCCEEEEEeCC
Confidence 332 2357777776654
No 36
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.58 E-value=8.3e-05 Score=69.09 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCceee
Q 005166 211 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 290 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGfK 290 (710)
+..+|.+||+||+.+....|.|.+.. ..+.-.|.|.|||.||+.+++.+++...++.+.. ...+..|+|+.
T Consensus 48 l~~il~nll~NAik~~~~~I~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~---~~~~g~GlGL~ 118 (161)
T 1bxd_A 48 IKRAVANMVVNAARYGNGWIKVSSGT------EPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA---RTISGTGLGLA 118 (161)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEEEE------ETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC---CCCCCCSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC---CCCCCcccCHH
Confidence 55789999999999988888887764 2345679999999999999998887643333221 11245788885
Q ss_pred eec---cccCceEEEEEee
Q 005166 291 TGA---MRLGKDALVLTQT 306 (710)
Q Consensus 291 sA~---m~lg~~v~V~Sk~ 306 (710)
.+- -.+|.++.+.+..
T Consensus 119 i~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 119 IVQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp TTHHHHHHHTSEEEEEEET
T ss_pred HHHHHHHHcCCEEEEEECC
Confidence 432 2357777777754
No 37
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.38 E-value=0.00018 Score=71.97 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCccccc
Q 005166 211 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 285 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~f 285 (710)
+..+|..||+||+++... .|.|.+.. ..+.-.|.|.|||.||+++++.++|.-.++.+.. .....+..
T Consensus 139 l~~il~NLl~NAik~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~ 211 (258)
T 2c2a_A 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILDE------KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSS-LTYEVPGT 211 (258)
T ss_dssp HHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE------ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC----------C
T ss_pred HHHHHHHHHHHHHhcCcCCCCceeEEEEEec------CCCeEEEEEEecCCCCCHHHHHhhccccccCCCC-CCCCCCCc
Confidence 457899999999998532 35555542 2345678999999999999999888633332211 11122346
Q ss_pred Cceeeeec---cccCceEEEEEeeC
Q 005166 286 GVGFKTGA---MRLGKDALVLTQTA 307 (710)
Q Consensus 286 GiGfKsA~---m~lg~~v~V~Sk~~ 307 (710)
|+|+..+- -..|..+.|.|...
T Consensus 212 GLGL~i~~~iv~~~gG~i~v~s~~~ 236 (258)
T 2c2a_A 212 GLGLAITKEIVELHGGRIWVESEVG 236 (258)
T ss_dssp CCTHHHHHHHHHHTTCEEEEEEETT
T ss_pred chHHHHHHHHHHHcCCEEEEEecCC
Confidence 88875321 24678888877643
No 38
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.36 E-value=0.00017 Score=78.32 Aligned_cols=91 Identities=14% Similarity=0.268 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCC----
Q 005166 211 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 277 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A---------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~---- 277 (710)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.++|...++.+...
T Consensus 244 L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~ 317 (407)
T 2q8g_A 244 LYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTL------GNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVET 317 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccc
Confidence 44689999999999843 268887763 34566799999999999999999987555433210
Q ss_pred -CCCcccccCceeeeec---cccCceEEEEEeeC
Q 005166 278 -DPNRIGRFGVGFKTGA---MRLGKDALVLTQTA 307 (710)
Q Consensus 278 -d~~~IG~fGiGfKsA~---m~lg~~v~V~Sk~~ 307 (710)
.....+.+|+|+..+- -..|.++.|.|...
T Consensus 318 ~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g 351 (407)
T 2q8g_A 318 SRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEG 351 (407)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred cCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcCC
Confidence 1234567899985332 23577788877543
No 39
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.36 E-value=0.00018 Score=65.53 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCce
Q 005166 211 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~--A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiG 288 (710)
+..+|.+||+||+.+. ...|.|.+.. ..+.-.|.|.|||.||+.+++.+++...++.+ -+..|+|
T Consensus 48 l~~il~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~-------~~g~GlG 114 (152)
T 3a0y_A 48 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK-------TQGTGLG 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEE------CSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC---------CCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHhHhhhhccCC-------CCCCCcC
Confidence 5578999999999985 3566666653 33466789999999999999988875433322 1246888
Q ss_pred eeeec--c--ccCceEEEEEe
Q 005166 289 FKTGA--M--RLGKDALVLTQ 305 (710)
Q Consensus 289 fKsA~--m--~lg~~v~V~Sk 305 (710)
+..+- + ..|..+.+.+.
T Consensus 115 L~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 115 LSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp HHHHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHHHhCCcEEEEecC
Confidence 86432 2 46777777665
No 40
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.28 E-value=0.00027 Score=64.82 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCccccc
Q 005166 211 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 285 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A-----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~f 285 (710)
+..+|.|||+||+.++. ..|.|.+.. ..+.-.|.|.|||.||+ ++.+.+.-.++.+. ..+..
T Consensus 40 l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~-----~~~~~ 106 (145)
T 1th8_A 40 IKTVVSEAVTNAIIHGYNNDPNGIVSISVII------EDGVVHLTVRDEGVGIP--DIEEARQPLFTTKP-----ELERS 106 (145)
T ss_dssp HHHHHHHHHHHHHHTTSTTCTTSEEEEEEEE------ETTEEEEEEEECSSCCS--CHHHHTCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------eCCEEEEEEEECCCCcC--hHHHhhcccccCCC-----CCCCC
Confidence 56899999999998863 566666653 23456789999999999 66666643333221 11345
Q ss_pred CceeeeeccccCceEEEEEee
Q 005166 286 GVGFKTGAMRLGKDALVLTQT 306 (710)
Q Consensus 286 GiGfKsA~m~lg~~v~V~Sk~ 306 (710)
|+|+..+- ++.+.+.+.+..
T Consensus 107 GlGL~iv~-~~~~~i~~~~~~ 126 (145)
T 1th8_A 107 GMGFTIME-NFMDEVIVESEV 126 (145)
T ss_dssp SCHHHHHH-HHSSEEEEEEET
T ss_pred cchHHHHH-HHHheEEEEeCC
Confidence 88885433 344466665543
No 41
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.25 E-value=0.00022 Score=77.00 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCC-----
Q 005166 211 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA----- 276 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A---------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~----- 276 (710)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.++|...++.+..
T Consensus 231 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~ 304 (394)
T 2e0a_A 231 LHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVL------GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDN 304 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEE------CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC----
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEe------CCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCc
Confidence 45789999999999843 258887763 3456689999999999999999998755443321
Q ss_pred CCCCcccccCceeeeec---cccCceEEEEEeeC
Q 005166 277 DDPNRIGRFGVGFKTGA---MRLGKDALVLTQTA 307 (710)
Q Consensus 277 ~d~~~IG~fGiGfKsA~---m~lg~~v~V~Sk~~ 307 (710)
......+.+|+|+..+- -..|.++.|.|...
T Consensus 305 ~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g 338 (394)
T 2e0a_A 305 SRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSG 338 (394)
T ss_dssp --CCCSSCSSCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCCCCcccCHHHHHHHHHHhCCEEEEEecCC
Confidence 01233466889985332 24677888877543
No 42
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.24 E-value=0.00059 Score=62.39 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcccccCCC-ccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCcee
Q 005166 211 IFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 289 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~-~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGf 289 (710)
+..+|.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+.+++.+++.-.++... ...+..|+|+
T Consensus 47 l~~il~nLl~NA~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~----~~~~g~GlGL 116 (150)
T 1ysr_A 47 LRLAVDNAIANAVKHGGATLVQLSAVS------SRAGVEIAIDDNGSGVPEGERQVVFERFSRGST----ASHSGSGLGL 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEEEE------ETTEEEEEEEESSSCCCGGGHHHHHTSCC---------------CCC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEe------cCCEEEEEEEECCCCCCHHHHHHHhcccccCCC----CCCCCCCcCH
Confidence 457899999999998643 55555543 234567999999999999999998763332111 1123468887
Q ss_pred eeec---cccCceEEEEEee
Q 005166 290 KTGA---MRLGKDALVLTQT 306 (710)
Q Consensus 290 KsA~---m~lg~~v~V~Sk~ 306 (710)
..+- -.+|..+.+.+..
T Consensus 117 ~i~~~~~~~~gG~i~~~~~~ 136 (150)
T 1ysr_A 117 ALVAQQAQLHGGTASLENSP 136 (150)
T ss_dssp HHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHcCCEEEEeecC
Confidence 5322 2357777777654
No 43
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.22 E-value=0.00022 Score=77.01 Aligned_cols=91 Identities=14% Similarity=0.287 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCC----
Q 005166 211 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 277 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A---------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~---- 277 (710)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.++|...++.+...
T Consensus 232 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~ 305 (394)
T 2btz_A 232 LYHMLFELFKNAMRATVESHESSLILPPIKVMVAL------GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGT 305 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC------
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEe------CCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCccc
Confidence 45789999999999842 258887763 34566799999999999999999987554433210
Q ss_pred CCCcccccCceeeeec---cccCceEEEEEeeC
Q 005166 278 DPNRIGRFGVGFKTGA---MRLGKDALVLTQTA 307 (710)
Q Consensus 278 d~~~IG~fGiGfKsA~---m~lg~~v~V~Sk~~ 307 (710)
.....+.+|+|+..+- -..|.++.|.|...
T Consensus 306 ~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g 338 (394)
T 2btz_A 306 GGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEG 338 (394)
T ss_dssp --------CCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCCCccCCHHHHHHHHHHhCCEEEEEecCC
Confidence 1223456888885332 24678888877543
No 44
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.21 E-value=0.00044 Score=69.06 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCce
Q 005166 211 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiG 288 (710)
+..+|.+||+||+++.. ..|.|.+.. ..+.-.|.|.|||.||+.+++.+++....+.+. +..|+|
T Consensus 156 l~~il~nLl~NA~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-------~g~GlG 222 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPPGGRVTLSARR------ALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-------GGPGLG 222 (268)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEEE------CSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS-------CCCTTH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEe------cCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-------CCCccc
Confidence 55789999999999965 466666553 345678999999999999999888764433221 346888
Q ss_pred eeeec---cccCceEEEEEee
Q 005166 289 FKTGA---MRLGKDALVLTQT 306 (710)
Q Consensus 289 fKsA~---m~lg~~v~V~Sk~ 306 (710)
+..+- -.+|..+.+.+..
T Consensus 223 L~i~~~~~~~~gG~i~i~s~~ 243 (268)
T 4ew8_A 223 LALVKALVELHGGWVALESEP 243 (268)
T ss_dssp HHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 75332 2467777777654
No 45
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.20 E-value=0.00018 Score=69.35 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCceee
Q 005166 211 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 290 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGfK 290 (710)
+..+|.+||+||+.+......|.|... ...|.|.|||.||+++++.+++...++.+. ...+..|+|+.
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~--------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 185 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLN--------ADNFIVRDNGPGVTPEALARIGERFYRPPG----QTATGSGLGLS 185 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEEC--------SSEEEEECSCC------------------------------CTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEc--------cCeEEEEECCCCCCHHHHHHHHhhhccCCC----CCCCcccccHH
Confidence 457899999999999765544555431 123999999999999999888763333221 11234688875
Q ss_pred eec---cccCceEEEEEeeC
Q 005166 291 TGA---MRLGKDALVLTQTA 307 (710)
Q Consensus 291 sA~---m~lg~~v~V~Sk~~ 307 (710)
.+- -.+|.++.|.|...
T Consensus 186 i~~~i~~~~gG~i~i~s~~~ 205 (222)
T 3jz3_A 186 IVQRIAKLHGMNVEFGNAEQ 205 (222)
T ss_dssp HHHHHHHHTTCEEECCBCTT
T ss_pred HHHHHHHHcCCEEEEEcCCC
Confidence 332 23566666655443
No 46
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.19 E-value=0.00017 Score=77.61 Aligned_cols=91 Identities=22% Similarity=0.342 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcccccCC----------CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCC---
Q 005166 211 IFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD--- 277 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A----------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~--- 277 (710)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.++|...++.+...
T Consensus 239 L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~ 312 (388)
T 1gkz_A 239 LDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN------NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQD 312 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE------CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC------
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe------CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccc
Confidence 56789999999999842 168887763 34566799999999999999999887544433210
Q ss_pred ----------------CCCcccccCceeeeec---cccCceEEEEEeeC
Q 005166 278 ----------------DPNRIGRFGVGFKTGA---MRLGKDALVLTQTA 307 (710)
Q Consensus 278 ----------------d~~~IG~fGiGfKsA~---m~lg~~v~V~Sk~~ 307 (710)
.....+.+|+|+..+- -.+|.++.|.|...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g 361 (388)
T 1gkz_A 313 PRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQG 361 (388)
T ss_dssp -------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred cccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCC
Confidence 1123356888885332 24688888887643
No 47
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.19 E-value=0.00023 Score=77.66 Aligned_cols=91 Identities=19% Similarity=0.266 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcccccCC----------CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCC----
Q 005166 211 IFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA---- 276 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A----------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~---- 276 (710)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.++|...++.+..
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~ 327 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTL------GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLE 327 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCcc
Confidence 44789999999999843 268887763 3446689999999999999999998754443321
Q ss_pred -CCCCcccccCceeeeec---cccCceEEEEEeeC
Q 005166 277 -DDPNRIGRFGVGFKTGA---MRLGKDALVLTQTA 307 (710)
Q Consensus 277 -~d~~~IG~fGiGfKsA~---m~lg~~v~V~Sk~~ 307 (710)
......+.+|+|+..+- -..|.++.|.|...
T Consensus 328 ~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g 362 (419)
T 1y8o_A 328 PTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEG 362 (419)
T ss_dssp -----CC--CTTHHHHHHHHHHHTTCEEEEEEETT
T ss_pred ccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecCC
Confidence 01223456899985332 23577888877643
No 48
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.18 E-value=0.00011 Score=70.09 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcccccC--------------CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhH
Q 005166 211 IFGAIAELVDNSRDAK--------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 263 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~--------------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl 263 (710)
...+|.+||+||+.++ ...|.|.+.. ..+.-.|.|.|||.||+++++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~ 108 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKI 108 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEE------ETTEEEEEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHH
Confidence 3466999999999985 3456666653 234667899999999999987
No 49
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.08 E-value=0.00045 Score=65.24 Aligned_cols=92 Identities=17% Similarity=0.279 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCce
Q 005166 211 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiG 288 (710)
+..+|.+||+||+++.. ..+.|.+... ...+.-.|.|.|||.||+.+++.+++...++.... .....+..|+|
T Consensus 44 l~~il~nLl~NAi~~~~~~~~i~I~i~~~----~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~-~~~~~~g~GlG 118 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSPEGGHVTFSIDVN----EEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKA-RTRKLGGTGLG 118 (177)
T ss_dssp HHHHHHHHHHHHHHTCCTTCCEEEEEEEE----TTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC-------CCCCCCH
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEc----cCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCC-CCCCCCCCCcC
Confidence 45789999999999863 4556665321 13345678999999999999998887643332211 12223457888
Q ss_pred eeeec---cccCceEEEEEeeC
Q 005166 289 FKTGA---MRLGKDALVLTQTA 307 (710)
Q Consensus 289 fKsA~---m~lg~~v~V~Sk~~ 307 (710)
++.+- -.+|..+.+.+...
T Consensus 119 L~iv~~~~~~~~G~i~i~~~~~ 140 (177)
T 3sl2_A 119 LAIAKEMVQAHGGDIWADSIEG 140 (177)
T ss_dssp HHHHHHHHHHTTCCEEEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 76332 24577777776544
No 50
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.08 E-value=0.00058 Score=66.77 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCce
Q 005166 211 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~--A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiG 288 (710)
+..+|.+||+||+.+. +..|.|.+.. ..+.-.|.|.|||.||+.+++.+++...++.+. .+..|+|
T Consensus 124 l~~il~nLl~NA~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~------~~g~GlG 191 (244)
T 3d36_A 124 FRQCLLNVMKNAIEAMPNGGTLQVYVSI------DNGRVLIRIADTGVGMTKEQLERLGEPYFTTKG------VKGTGLG 191 (244)
T ss_dssp HHHHHHHHHHHHHHTCTTCEEEEEEEEE------ETTEEEEEEEECSSCCCHHHHHHTTSTTCCSSG------GGCCSCH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEEEE------eCCEEEEEEEecCCCCCHHHHHHHhcccccCCC------CCCcchh
Confidence 5578999999999986 4566666653 235678999999999999999988764443321 2346888
Q ss_pred eeeec---cccCceEEEEEeeC
Q 005166 289 FKTGA---MRLGKDALVLTQTA 307 (710)
Q Consensus 289 fKsA~---m~lg~~v~V~Sk~~ 307 (710)
+..+- -.+|..+.+.+...
T Consensus 192 L~i~~~i~~~~gG~i~~~~~~~ 213 (244)
T 3d36_A 192 MMVVYRIIESMNGTIRIESEIH 213 (244)
T ss_dssp HHHHHHHHHHTTCEEEEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 75332 24678888877643
No 51
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.08 E-value=0.00026 Score=63.72 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCcee
Q 005166 211 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 289 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGf 289 (710)
+..++.||++||+.+. +..|.|.+.. ..+.-.|.|.|||.||+++++ +..|+|+
T Consensus 41 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL 95 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS-------------------FSKGHGL 95 (128)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCSCSSC-------------------CCTTSHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEE------eCCEEEEEEEECCcCcCcccC-------------------CCCCccH
Confidence 4578999999999874 5678877764 234568999999999988764 2247887
Q ss_pred eeec---cccCceEEEEEee
Q 005166 290 KTGA---MRLGKDALVLTQT 306 (710)
Q Consensus 290 KsA~---m~lg~~v~V~Sk~ 306 (710)
..+- -.+|..+.+.|..
T Consensus 96 ~~~~~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 96 LGMRERLEFANGSLHIDTEN 115 (128)
T ss_dssp HHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHcCCEEEEEeCC
Confidence 5322 2357777777655
No 52
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.99 E-value=0.00017 Score=65.98 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcccccC---CCccEEEEEeeecccC----CCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCccc
Q 005166 211 IFGAIAELVDNSRDAK---ATKLEISIESIYFKKA----GKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 283 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~---A~~I~I~I~~~~~~~~----~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG 283 (710)
+..+|.+||+||+.+. ...|.|.+....+... ....-.|.|.|||.||+.+++.+++...++.+. +
T Consensus 49 l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~-------~ 121 (160)
T 1r62_A 49 IEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-------G 121 (160)
T ss_dssp HHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-------------------------
T ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-------C
Confidence 5578999999999975 4566666653110000 001457899999999999999888754333221 3
Q ss_pred ccCceeeeec---cccCceEEEEEeeC
Q 005166 284 RFGVGFKTGA---MRLGKDALVLTQTA 307 (710)
Q Consensus 284 ~fGiGfKsA~---m~lg~~v~V~Sk~~ 307 (710)
..|+|+..+- -.+|.++.+.+...
T Consensus 122 g~GlGL~i~~~~~~~~gG~l~i~s~~~ 148 (160)
T 1r62_A 122 GTGLGLSIARNLIDQHSGKIEFTSWPG 148 (160)
T ss_dssp --CHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCccCHHHHHHHHHHCCCeEEEEeCCC
Confidence 4688875332 24677888877543
No 53
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.87 E-value=0.00082 Score=72.54 Aligned_cols=88 Identities=16% Similarity=0.222 Sum_probs=53.9
Q ss_pred HHHHHHHHhcccccC------------C--CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhH--------------
Q 005166 212 FGAIAELVDNSRDAK------------A--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV-------------- 263 (710)
Q Consensus 212 ~~AIaELIDNS~DA~------------A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl-------------- 263 (710)
..+|.+||.||++++ . ..|.|.+.. .++.-.|+|.|||.||+++.+
T Consensus 108 ~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~------~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~ 181 (379)
T 1b3q_A 108 GEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESK 181 (379)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE------ETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTT
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhh
Confidence 356899999999997 2 345555542 235667899999999999987
Q ss_pred ----------HhhhhcccCCCCCCCCCcccccCceeeee---ccccCceEEEEEeeC
Q 005166 264 ----------VRMTYFGHKQPDADDPNRIGRFGVGFKTG---AMRLGKDALVLTQTA 307 (710)
Q Consensus 264 ----------~~~l~fG~s~k~~~d~~~IG~fGiGfKsA---~m~lg~~v~V~Sk~~ 307 (710)
...|.-|++.+. .....+..|+|+..+ .-.+|..+.|.|...
T Consensus 182 ~~~~~~~~~~~~iF~p~fst~~--~~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g 236 (379)
T 1b3q_A 182 AATLSDQEILNFLFVPGFSTKE--KVSEVSGRGVGMDVVKNVVESLNGSMGIESEKD 236 (379)
T ss_dssp TTTSCTHHHHSGGGSTTCC-------------CCCSHHHHHHHHHTTCEEEEEEETT
T ss_pred hhcCCHHHHHHHhcCCCCccCC--ccCCCCCccccHHHHHHHHHHCCCEEEEEEcCC
Confidence 334444444432 122345578888422 224688888888654
No 54
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.87 E-value=0.00058 Score=70.48 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcccccC--CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCce
Q 005166 211 IFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~--A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiG 288 (710)
+..+|.+||+||+.+. +..|.|.+.. ..+.-.|+|.|||.||+++++.+++...++.+. +..|+|
T Consensus 245 l~~vl~nLl~NA~k~~~~~~~i~i~~~~------~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-------~g~GlG 311 (349)
T 3a0r_A 245 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-------QGTGLG 311 (349)
T ss_dssp HHHHHHHHHTHHHHTTCTTCCEEEEEEE------ETTEEEEEEEEESCCCCGGGGTTTSSSCCCC-------------CC
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEEEe------cCCEEEEEEEECCCCCChHHHhhcCCCCccCCC-------CCccch
Confidence 5678999999999986 4677777653 235678899999999999999888764444331 235888
Q ss_pred eeeec--c--ccCceEEEEEe
Q 005166 289 FKTGA--M--RLGKDALVLTQ 305 (710)
Q Consensus 289 fKsA~--m--~lg~~v~V~Sk 305 (710)
+..+- + ..|..+.+.+.
T Consensus 312 L~i~~~~v~~~~gg~i~~~~~ 332 (349)
T 3a0r_A 312 LSICRKIIEDEHGGKIWTENR 332 (349)
T ss_dssp CTHHHHHHHHTTCSBCCEEEC
T ss_pred HHHHHHHHHHhCCCEEEEEeC
Confidence 75321 2 36777777665
No 55
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.76 E-value=0.00084 Score=64.98 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCcee
Q 005166 211 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 289 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiGf 289 (710)
+..++.||++||+.++ +..|.|.+.. ..+.-.|+|.|||.||+++.+ +..|+|+
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL 185 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS-------------------FSKGHGL 185 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCC---------------------------CHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------eCCEEEEEEEECCcCCCCCCC-------------------CCCCCCH
Confidence 4568999999999874 4677777763 235678999999999998875 1237787
Q ss_pred eeec---cccCceEEEEEee
Q 005166 290 KTGA---MRLGKDALVLTQT 306 (710)
Q Consensus 290 KsA~---m~lg~~v~V~Sk~ 306 (710)
..+- -.+|..+.|.|..
T Consensus 186 ~~~~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 186 LGMRERLEFANGSLHIDTEN 205 (218)
T ss_dssp HHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHcCCEEEEeCCC
Confidence 4321 2467777777755
No 56
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=96.40 E-value=0.0033 Score=55.81 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=50.3
Q ss_pred CHHHHHHHHHhcccccC-CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhhHHhhhhcccCCCCCCCCCcccccCce
Q 005166 210 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 288 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~edl~~~l~fG~s~k~~~d~~~IG~fGiG 288 (710)
.+..++.|||+||+.+. +..|.|.+.. ..+ -.|+|.|||.||+++. .|+|
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~----------------------~GlG 93 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKV------DDD-LCIEVTDNGRGMPDEF----------------------TGSG 93 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEE------SSE-EEEEEEECCCCCTTTT----------------------CSHH
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEE------cCC-EEEEEecCCCCCCccc----------------------CCcC
Confidence 36688999999999986 6778887764 234 7789999999998765 3888
Q ss_pred eeeec---cccCceEEEEEeeC
Q 005166 289 FKTGA---MRLGKDALVLTQTA 307 (710)
Q Consensus 289 fKsA~---m~lg~~v~V~Sk~~ 307 (710)
+..+. -.+|.++.+.+...
T Consensus 94 L~i~~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 94 LTNLRQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp HHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHcCCEEEEeeCCC
Confidence 75322 23567777766544
No 57
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.011 Score=72.53 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=60.9
Q ss_pred HHHHHHHHHhccccc---C-C-CccEEEEEeeecccCCCCcCEEEEEeCCCCCChhh--------HHhhhh-cccCCCC-
Q 005166 211 IFGAIAELVDNSRDA---K-A-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPD- 275 (710)
Q Consensus 211 ~~~AIaELIDNS~DA---~-A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ed--------l~~~l~-fG~s~k~- 275 (710)
+.-.+.|+||||+|. | + +.|+|.|.. ....++|.|||.||+-+. ++-+|+ +..+.|-
T Consensus 60 L~hl~~EildNsiDea~ag~~~~~I~V~i~~--------~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd 131 (1177)
T 4gfh_A 60 LFKIFDEILVNAADNKVRDPSMKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYD 131 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCC
T ss_pred eeeEeeEEEEChHhHHhhCCCCCeEEEEEEC--------CCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcC
Confidence 345689999999993 3 2 678888862 356899999999998542 111232 1111121
Q ss_pred -CCCCCcccccCceeeeeccccCceEEEEEeeCCCCceeEEEEeecCC
Q 005166 276 -ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG 322 (710)
Q Consensus 276 -~~d~~~IG~fGiGfKsA~m~lg~~v~V~Sk~~~~~s~~~ls~sf~~g 322 (710)
..-..+-|..|+|. ++.-.|...+.|.+..... .-.+.++|..|
T Consensus 132 ~~~ykvSGGLHGVG~-svVNALS~~~~vev~~~r~--Gk~y~q~f~~g 176 (1177)
T 4gfh_A 132 DDEKKVTGGRNGYGA-KLCNIFSTEFILETADLNV--GQKYVQKWENN 176 (1177)
T ss_dssp CSSCCCCSCCSSCHH-HHHHHTEEEEEEEEEETTT--TEEEEEEEETT
T ss_pred CCCCeEeccCCChhh-hHHhhcCCceEEEEEEEcC--CEEEEEEEECC
Confidence 11234568999998 4555578887776643221 12344566444
No 58
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.86 E-value=0.0063 Score=53.70 Aligned_cols=45 Identities=27% Similarity=0.382 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChhh
Q 005166 211 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 262 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ed 262 (710)
+..++.||++||+.+. +..|.|.+.. ..+ -.|+|.|||.||+++.
T Consensus 40 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 40 AEAVLREAVSNAVRHANATSLAINVSV------EDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEEEEE------EEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEe------CCC-EEEEEEECCCCCCccc
Confidence 5688999999999975 4577777763 224 6889999999999876
No 59
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=93.46 E-value=0.061 Score=54.01 Aligned_cols=82 Identities=9% Similarity=-0.091 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeeecccCCCCcCEEEEEeCCCC--CChhhHHhhhhcccCCCCCCCCCcccccC
Q 005166 211 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHG--MTHQDVVRMTYFGHKQPDADDPNRIGRFG 286 (710)
Q Consensus 211 ~~~AIaELIDNS~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~G--Mt~edl~~~l~fG~s~k~~~d~~~IG~fG 286 (710)
...++.-||+||++|.. ..|.|.+.. ..+...|.|.|+|.| |+++.+...+.-..+.+ .+-.|
T Consensus 147 ~~qvl~NLl~NA~~a~~~gg~I~v~~~~------~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~-------~~G~G 213 (247)
T 4fpp_A 147 SSRAVLNIAQIAASALPAGGVATVKGVA------ADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEG-------LGGPW 213 (247)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEEEEE------ETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSS-------CHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEE------ECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCC-------CCCcc
Confidence 44688899999999954 356666653 345678899999987 55655555543111111 22348
Q ss_pred ceeeee---ccccCceEEEEEe
Q 005166 287 VGFKTG---AMRLGKDALVLTQ 305 (710)
Q Consensus 287 iGfKsA---~m~lg~~v~V~Sk 305 (710)
+|+..+ .-..|..+.|.|.
T Consensus 214 LGLai~~~iv~~hGG~i~v~s~ 235 (247)
T 4fpp_A 214 VQAAYLNALVRAAGGQIAVEIG 235 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEEc
Confidence 887532 2246888888764
No 60
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=92.09 E-value=0.019 Score=67.77 Aligned_cols=45 Identities=42% Similarity=0.893 Sum_probs=36.7
Q ss_pred CceeeCc--cchhhccCCCCCC-CCCCCCCceecCCCC-------CCCCCCCccc
Q 005166 600 QEWVQCN--KCRKWRMLDPGFD-TKSLPVEWFCYMKPF-------EGLCDLPEQK 644 (710)
Q Consensus 600 ~~WVQCd--~C~KWR~Lp~~~~-~~~lp~~W~C~~n~~-------~~sC~~pEe~ 644 (710)
.-|+||- .|.|||+||.... ..+++.+..|.|-++ ...|+.||+.
T Consensus 91 ~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 145 (776)
T 4gut_A 91 PYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDL 145 (776)
T ss_dssp CCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCCC-------CCGGGSCCCH
T ss_pred cHhhhcCcccccchhhCCCcCCCChhhhheeeccCccCcccccccCCCCCCCccc
Confidence 4899999 9999999998865 356788999998642 3679999974
No 61
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=92.00 E-value=0.078 Score=43.94 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=25.1
Q ss_pred CCceeeCccchhhccCC-CCCCCCCCCCCceec
Q 005166 599 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCY 630 (710)
Q Consensus 599 ~~~WVQCd~C~KWR~Lp-~~~~~~~lp~~W~C~ 630 (710)
+..+||||.|..|-.+. .++.....|+.|+|.
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~ 62 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 62 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCH
T ss_pred CCCEEECCCCCccccccccCcCcccCCCcEECC
Confidence 45799999999998877 344445678999995
No 62
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=91.09 E-value=0.082 Score=41.31 Aligned_cols=32 Identities=22% Similarity=0.680 Sum_probs=25.2
Q ss_pred CCceeeCccchhhccCCC-CCCCCCCCCCceec
Q 005166 599 DQEWVQCNKCRKWRMLDP-GFDTKSLPVEWFCY 630 (710)
Q Consensus 599 ~~~WVQCd~C~KWR~Lp~-~~~~~~lp~~W~C~ 630 (710)
+..+||||.|..|-.+.= ++.....|+.|+|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQ 47 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCH
T ss_pred CCCEEEcCCCCccccccccCCCcccCCCcEECc
Confidence 469999999999988873 44444678999985
No 63
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.81 E-value=0.16 Score=41.09 Aligned_cols=34 Identities=18% Similarity=0.448 Sum_probs=23.8
Q ss_pred CCCceeeCccchhhccCCC-CCCC--CCCCCCceecC
Q 005166 598 PDQEWVQCNKCRKWRMLDP-GFDT--KSLPVEWFCYM 631 (710)
Q Consensus 598 ~~~~WVQCd~C~KWR~Lp~-~~~~--~~lp~~W~C~~ 631 (710)
+...|||||.|..|=...= ++.. ...++.|+|..
T Consensus 18 ~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 54 (64)
T 1we9_A 18 ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPS 54 (64)
T ss_dssp SSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHH
T ss_pred CCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCC
Confidence 4578999999999977652 3322 23468999853
No 64
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.97 E-value=0.2 Score=44.31 Aligned_cols=33 Identities=30% Similarity=0.815 Sum_probs=25.7
Q ss_pred CCceeeCccchhhccCC-CCCCCCCCCCCceecC
Q 005166 599 DQEWVQCNKCRKWRMLD-PGFDTKSLPVEWFCYM 631 (710)
Q Consensus 599 ~~~WVQCd~C~KWR~Lp-~~~~~~~lp~~W~C~~ 631 (710)
+..+||||.|.+|-.+. .++.....|+.|+|..
T Consensus 39 ~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~ 72 (98)
T 2lv9_A 39 DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCER 72 (98)
T ss_dssp SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTT
T ss_pred CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCC
Confidence 45899999999998876 3344467889999964
No 65
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.59 E-value=0.2 Score=41.59 Aligned_cols=31 Identities=23% Similarity=0.848 Sum_probs=23.3
Q ss_pred CceeeCccchhhccCCC-CCC-CCCCCCCceec
Q 005166 600 QEWVQCNKCRKWRMLDP-GFD-TKSLPVEWFCY 630 (710)
Q Consensus 600 ~~WVQCd~C~KWR~Lp~-~~~-~~~lp~~W~C~ 630 (710)
..|||||.|..|-.+.= ++. ....|+.|+|.
T Consensus 29 ~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~ 61 (72)
T 1wee_A 29 ERMLACDGCGVWHHTRCIGINNADALPSKFLCF 61 (72)
T ss_dssp SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCH
T ss_pred CcEEECCCCCCccCCeeeccCccccCCCcEECC
Confidence 37999999999987762 333 23578999995
No 66
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=88.06 E-value=0.42 Score=51.72 Aligned_cols=47 Identities=26% Similarity=0.322 Sum_probs=33.6
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEeeecccCCCCcCEEEEEeCCCCCChh
Q 005166 210 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 261 (710)
Q Consensus 210 ~~~~AIaELIDNS~DA~-----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 261 (710)
....++.||+.||+..+ ...|.|.+... ..+.-.|.|.|+|.|++..
T Consensus 297 ~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~-----~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 297 DIVHAISEFVENAVEHGYATDVSKGIVVAAALA-----GDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEEC-----TTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEc-----CCCEEEEEEEECCCCCCCC
Confidence 45689999999999986 56788877631 1235688999999999875
No 67
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=84.10 E-value=0.23 Score=38.76 Aligned_cols=35 Identities=26% Similarity=0.677 Sum_probs=23.4
Q ss_pred CCCCCceeeCc-cchhhccCCC-CCCC-CCCCCCceec
Q 005166 596 YKPDQEWVQCN-KCRKWRMLDP-GFDT-KSLPVEWFCY 630 (710)
Q Consensus 596 ~~~~~~WVQCd-~C~KWR~Lp~-~~~~-~~lp~~W~C~ 630 (710)
+.++..||||| .|.+|=.+.= ++.. ...+++|+|.
T Consensus 12 ~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~ 49 (52)
T 2kgg_A 12 CKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICI 49 (52)
T ss_dssp CCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCS
T ss_pred cCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECC
Confidence 34467899999 8999977653 3321 1124789885
No 68
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=79.86 E-value=0.43 Score=39.93 Aligned_cols=33 Identities=15% Similarity=0.432 Sum_probs=22.3
Q ss_pred CCCceeeCccchhhccCC-CCCCCC--CCCCCceec
Q 005166 598 PDQEWVQCNKCRKWRMLD-PGFDTK--SLPVEWFCY 630 (710)
Q Consensus 598 ~~~~WVQCd~C~KWR~Lp-~~~~~~--~lp~~W~C~ 630 (710)
++..|||||.|..|=... -++... ..++.|+|.
T Consensus 21 ~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~ 56 (75)
T 3kqi_A 21 VTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCP 56 (75)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCH
T ss_pred CCCCEEEcCCCCCCEecccccccccccCCCCEEECC
Confidence 467999999999997654 122222 234789885
No 69
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=78.48 E-value=0.99 Score=44.37 Aligned_cols=47 Identities=13% Similarity=0.086 Sum_probs=30.8
Q ss_pred HHHHhccccc--------CCCccEEEEEeeecccCC--CCcCEEEEEeCCCCCChhhHHhhhh
Q 005166 216 AELVDNSRDA--------KATKLEISIESIYFKKAG--KDIPMLSIIDDGHGMTHQDVVRMTY 268 (710)
Q Consensus 216 aELIDNS~DA--------~A~~I~I~I~~~~~~~~~--~~~~~L~I~DNG~GMt~edl~~~l~ 268 (710)
..|++||.+| ....|.|.+.. . ++...|.|.|+|.|++.+.+.+.|.
T Consensus 111 gnLi~na~~Ai~~~~~~~~~~~I~i~i~~------~~~~~~l~i~V~d~G~~i~~e~~~~if~ 167 (192)
T 1ixm_A 111 AKLMRKLFHLFDQAVSRESENHLTVSLQT------DHPDRQLILYLDFHGAFADPSAFDDIRQ 167 (192)
T ss_dssp HHHHHHHHHHHHHHBCTTSCCEEEEEEEC------CCSSSSCEEEEEEESCBSCGGGCC----
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEEEE------ecCCCEEEEEEEeCCCCCCHHHHHHHHh
Confidence 4455555544 24677877763 2 4578899999999999998877764
No 70
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.35 E-value=0.28 Score=41.41 Aligned_cols=33 Identities=15% Similarity=0.383 Sum_probs=22.4
Q ss_pred CCCceeeCccchhhccCC-CCCCC--CCCCCCceec
Q 005166 598 PDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCY 630 (710)
Q Consensus 598 ~~~~WVQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~ 630 (710)
.+..|||||.|..|=... .++.. ...++.|+|.
T Consensus 23 ~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 58 (79)
T 1wep_A 23 VNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCP 58 (79)
T ss_dssp SSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCT
T ss_pred CCCceEEcCCCCCcEEeeecCcccccccCCCeEECC
Confidence 357899999999996543 12221 2346899986
No 71
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=74.49 E-value=1.7 Score=35.65 Aligned_cols=32 Identities=22% Similarity=0.803 Sum_probs=23.6
Q ss_pred CCceeeCc--cchhhccCC-CCC-----CCCCCCCCceec
Q 005166 599 DQEWVQCN--KCRKWRMLD-PGF-----DTKSLPVEWFCY 630 (710)
Q Consensus 599 ~~~WVQCd--~C~KWR~Lp-~~~-----~~~~lp~~W~C~ 630 (710)
+..+|||| .|..|-... -++ .....|++|||.
T Consensus 21 ~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 21 NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECc
Confidence 45899999 599998877 233 124578899995
No 72
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=73.38 E-value=0.98 Score=38.06 Aligned_cols=33 Identities=21% Similarity=0.701 Sum_probs=23.7
Q ss_pred CCCceeeCc--cchhhccCC-CCCCC------CCCCCCceec
Q 005166 598 PDQEWVQCN--KCRKWRMLD-PGFDT------KSLPVEWFCY 630 (710)
Q Consensus 598 ~~~~WVQCd--~C~KWR~Lp-~~~~~------~~lp~~W~C~ 630 (710)
.+..||||| .|..|-.+. -++.. ...|++|+|.
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~ 67 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCE 67 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECC
Confidence 456899999 999997764 12221 1578999995
No 73
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=73.15 E-value=0.6 Score=44.71 Aligned_cols=34 Identities=21% Similarity=0.533 Sum_probs=22.9
Q ss_pred CCCceeeCccchhhccCCC-CCC--CCCCCCCceecC
Q 005166 598 PDQEWVQCNKCRKWRMLDP-GFD--TKSLPVEWFCYM 631 (710)
Q Consensus 598 ~~~~WVQCd~C~KWR~Lp~-~~~--~~~lp~~W~C~~ 631 (710)
....|||||.|..|=+..= ++. ....++.|+|..
T Consensus 19 ~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~ 55 (174)
T 2ri7_A 19 ESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQ 55 (174)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHH
T ss_pred CCCCEeECCCCCchhChhhcCCchhhccCccCeecCC
Confidence 3568999999999955431 221 124578999964
No 74
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=71.99 E-value=1 Score=37.35 Aligned_cols=32 Identities=22% Similarity=0.724 Sum_probs=20.4
Q ss_pred CCceeeCccchhhccCC-CCCCCC-CCCCCceec
Q 005166 599 DQEWVQCNKCRKWRMLD-PGFDTK-SLPVEWFCY 630 (710)
Q Consensus 599 ~~~WVQCd~C~KWR~Lp-~~~~~~-~lp~~W~C~ 630 (710)
...|||||.|..|=.+. .++... ...+.|||.
T Consensus 30 ~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~ 63 (75)
T 2k16_A 30 GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCP 63 (75)
T ss_dssp SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCT
T ss_pred CCCEEEcCCCCcccccccCCCCccCCCCCCEECh
Confidence 34799999999996543 111111 123789995
No 75
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=70.97 E-value=1.4 Score=36.07 Aligned_cols=19 Identities=32% Similarity=0.758 Sum_probs=15.5
Q ss_pred CCCCCceeeCc-cchhhccC
Q 005166 596 YKPDQEWVQCN-KCRKWRML 614 (710)
Q Consensus 596 ~~~~~~WVQCd-~C~KWR~L 614 (710)
+.++..||||| .|.+|=..
T Consensus 18 ~~~~~~mI~CD~~C~~WfH~ 37 (65)
T 2vpb_A 18 VNDDQDAILCEASCQKWFHR 37 (65)
T ss_dssp CCTTSCEEEBTTTTCCEEEH
T ss_pred cCCCCCeEecccCccccCch
Confidence 55678999999 99999543
No 76
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.13 E-value=3.8 Score=35.82 Aligned_cols=30 Identities=27% Similarity=0.801 Sum_probs=20.5
Q ss_pred CceeeCcc--ch-hhccCCC-CCCCCCCCCCceec
Q 005166 600 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 630 (710)
Q Consensus 600 ~~WVQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 630 (710)
..+||||. |. .|=++.= ++. ...+++|||.
T Consensus 47 g~MI~CD~~dC~~~WfH~~CVgl~-~~p~g~W~Cp 80 (91)
T 1weu_A 47 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 80 (91)
T ss_dssp SCCCCCSCSSCSCCCCCSTTTTCS-SCCCSSCCCT
T ss_pred CCEeEecCCCCCCCCEecccCCcC-cCCCCCEECc
Confidence 47999999 77 8966652 222 2335799996
No 77
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=56.93 E-value=5.4 Score=33.09 Aligned_cols=30 Identities=27% Similarity=0.801 Sum_probs=20.7
Q ss_pred CceeeCcc--ch-hhccCCC-CCCCCCCCCCceec
Q 005166 600 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 630 (710)
Q Consensus 600 ~~WVQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 630 (710)
..+||||. |. .|=.+.= ++. ....++|||.
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cvgl~-~~p~g~w~Cp 60 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 60 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTTTCS-SCCSSCCCCT
T ss_pred CCEeEeeCCCCCCccEecccCCcC-cCCCCCEECC
Confidence 57999999 87 7977652 232 2234899995
No 78
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.18 E-value=3.3 Score=34.42 Aligned_cols=32 Identities=19% Similarity=0.566 Sum_probs=21.2
Q ss_pred CCceeeCccchhhccCC-CCCCCC------CCCCCceec
Q 005166 599 DQEWVQCNKCRKWRMLD-PGFDTK------SLPVEWFCY 630 (710)
Q Consensus 599 ~~~WVQCd~C~KWR~Lp-~~~~~~------~lp~~W~C~ 630 (710)
+..|||||.|..|-... -++... ..++.|+|.
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~ 65 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICP 65 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECc
Confidence 45899999999996654 122211 136889985
No 79
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=50.90 E-value=5.2 Score=32.32 Aligned_cols=30 Identities=20% Similarity=0.691 Sum_probs=20.1
Q ss_pred CceeeCcc--ch-hhccCCC-CCCCCCCCCCceec
Q 005166 600 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 630 (710)
Q Consensus 600 ~~WVQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 630 (710)
..+||||. |. .|=.+.= ++. ....++|||.
T Consensus 22 g~MI~CD~c~C~~~WfH~~Cvgl~-~~p~~~w~Cp 55 (62)
T 2g6q_A 22 GEMIGCDNEQCPIEWFHFSCVSLT-YKPKGKWYCP 55 (62)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeeeeCCCCCcccEecccCCcC-cCCCCCEECc
Confidence 47999999 55 8976652 222 2235799995
No 80
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=50.23 E-value=5.4 Score=31.86 Aligned_cols=30 Identities=23% Similarity=0.724 Sum_probs=20.0
Q ss_pred CceeeCcc--ch-hhccCCC-CCCCCCCCCCceec
Q 005166 600 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVEWFCY 630 (710)
Q Consensus 600 ~~WVQCd~--C~-KWR~Lp~-~~~~~~lp~~W~C~ 630 (710)
..+||||. |. .|=.+.= ++. ....++|||.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cvgl~-~~p~~~w~Cp 53 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACVDLT-TKPKGKWFCP 53 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCeeEeeCCCCCCCCEecccCCcc-cCCCCCEECc
Confidence 47999999 87 7976652 222 2223789994
No 81
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=48.03 E-value=6.6 Score=44.35 Aligned_cols=36 Identities=28% Similarity=0.757 Sum_probs=25.6
Q ss_pred CCCCCceeeCccchhhccCC-CCCCC--CCCCCCceecC
Q 005166 596 YKPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 631 (710)
Q Consensus 596 ~~~~~~WVQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~~ 631 (710)
.-++..|||||.|..|=... -++.. .+..++|+|-.
T Consensus 52 ~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~ 90 (528)
T 3pur_A 52 KKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPK 90 (528)
T ss_dssp TTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTT
T ss_pred CCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcC
Confidence 34678999999999998764 23332 34568999944
No 82
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=46.52 E-value=10 Score=37.52 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCeEEEEEec-------eeEEEEeCCCC
Q 005166 88 RRFLIYLQGRDMVAIAKFK-------FWEFYILPPDQ 117 (710)
Q Consensus 88 ~~f~~~l~~~~~~~~~~~~-------~~~~~~~~~~~ 117 (710)
..|.+||+.-.-+|||.+. .+-+|||||-+
T Consensus 128 ~~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPCe 164 (195)
T 1ow1_A 128 AAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCE 164 (195)
T ss_dssp HHTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSSH
T ss_pred HHHHHHHHhCccceEEecCCCCCCCcceEEEEcCCcH
Confidence 5599999999999999998 59999999973
No 83
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=44.58 E-value=10 Score=32.96 Aligned_cols=30 Identities=20% Similarity=0.611 Sum_probs=19.9
Q ss_pred CceeeCccch---hhccCCC-CCCCCCCCCCceec
Q 005166 600 QEWVQCNKCR---KWRMLDP-GFDTKSLPVEWFCY 630 (710)
Q Consensus 600 ~~WVQCd~C~---KWR~Lp~-~~~~~~lp~~W~C~ 630 (710)
..+|+||.|. .|=.+.= ++. ....+.|||.
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~-~~p~~~W~Cp 70 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLK-QAPKGKWYCS 70 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCS-SCTTSCCCSS
T ss_pred CCEEEecCCCCccccCcCccCCCC-cCCCCCccCC
Confidence 3699999976 8976652 332 2223699985
No 84
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=42.58 E-value=8 Score=37.81 Aligned_cols=32 Identities=25% Similarity=0.663 Sum_probs=20.9
Q ss_pred CceeeCccchhhccCCC-CCCC------CCCCC--CceecC
Q 005166 600 QEWVQCNKCRKWRMLDP-GFDT------KSLPV--EWFCYM 631 (710)
Q Consensus 600 ~~WVQCd~C~KWR~Lp~-~~~~------~~lp~--~W~C~~ 631 (710)
..|||||.|..|=...= ++.. ..+|+ .|+|..
T Consensus 19 ~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~ 59 (183)
T 3lqh_A 19 SKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVN 59 (183)
T ss_dssp CCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTT
T ss_pred CCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcC
Confidence 36999999999987652 2321 12343 798864
No 85
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=41.04 E-value=3.9 Score=45.84 Aligned_cols=35 Identities=14% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCCCceeeCccchhhccCC-CCCCC--CCCCCCceecC
Q 005166 597 KPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVEWFCYM 631 (710)
Q Consensus 597 ~~~~~WVQCd~C~KWR~Lp-~~~~~--~~lp~~W~C~~ 631 (710)
.++..|||||.|..|=... -++.. ...++.|+|..
T Consensus 47 d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~ 84 (488)
T 3kv5_D 47 DVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPN 84 (488)
T ss_dssp CTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHH
T ss_pred CCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCC
Confidence 3467899999999996654 12322 23468899954
No 86
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=40.65 E-value=9.3 Score=30.49 Aligned_cols=30 Identities=27% Similarity=0.815 Sum_probs=20.0
Q ss_pred CceeeCcc--ch-hhccCC-CCCCCCCCCCCceec
Q 005166 600 QEWVQCNK--CR-KWRMLD-PGFDTKSLPVEWFCY 630 (710)
Q Consensus 600 ~~WVQCd~--C~-KWR~Lp-~~~~~~~lp~~W~C~ 630 (710)
...|+||. |. .|=.+. .++. ....++|||.
T Consensus 21 g~mi~CD~cdC~~~wfH~~Cvgl~-~~p~g~w~C~ 54 (60)
T 2vnf_A 21 GEMIGCDNPDCSIEWFHFACVGLT-TKPRGKWFCP 54 (60)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCH
T ss_pred CCEEEeCCCCCCCceEehhcCCCC-cCCCCCEECc
Confidence 57999999 66 897665 2222 2223799995
No 87
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=39.76 E-value=9.7 Score=33.83 Aligned_cols=35 Identities=26% Similarity=0.690 Sum_probs=22.3
Q ss_pred CCCCCceeeCc-cchhhccCC-CCCCCC-------CCCCCceec
Q 005166 596 YKPDQEWVQCN-KCRKWRMLD-PGFDTK-------SLPVEWFCY 630 (710)
Q Consensus 596 ~~~~~~WVQCd-~C~KWR~Lp-~~~~~~-------~lp~~W~C~ 630 (710)
|.++..||||| .|..|=... -++... +..+.|+|.
T Consensus 13 ~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp 56 (105)
T 2xb1_A 13 VNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACD 56 (105)
T ss_dssp CCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCH
T ss_pred cCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECc
Confidence 33566899998 999996654 122210 123789984
No 88
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=36.79 E-value=8.3 Score=35.30 Aligned_cols=16 Identities=25% Similarity=0.777 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHhhcCC
Q 005166 83 DHNEWRRFLIYLQGRD 98 (710)
Q Consensus 83 ~~~ew~~f~~~l~~~~ 98 (710)
...+|++||||+.+++
T Consensus 86 s~~~WdRFMRFMeRYA 101 (120)
T 2kvo_A 86 SQPEWDRFMRFMERYG 101 (120)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3469999999998875
No 89
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=30.19 E-value=12 Score=33.29 Aligned_cols=12 Identities=42% Similarity=1.198 Sum_probs=10.4
Q ss_pred eeeCccchhhcc
Q 005166 602 WVQCNKCRKWRM 613 (710)
Q Consensus 602 WVQCd~C~KWR~ 613 (710)
.||||.|..|=+
T Consensus 2 mi~c~~c~~w~H 13 (140)
T 2ku7_A 2 MMQCGKCDRWVH 13 (140)
T ss_dssp CCCCSCCSSCHH
T ss_pred ccccccCCCccC
Confidence 699999999954
No 90
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.94 E-value=11 Score=31.12 Aligned_cols=31 Identities=23% Similarity=0.564 Sum_probs=20.0
Q ss_pred CCceeeCccc---hhhccCCC-CCCCCCCCCCceec
Q 005166 599 DQEWVQCNKC---RKWRMLDP-GFDTKSLPVEWFCY 630 (710)
Q Consensus 599 ~~~WVQCd~C---~KWR~Lp~-~~~~~~lp~~W~C~ 630 (710)
+..+||||.| ..|=.+.= ++. ....++|||.
T Consensus 16 ~g~MI~CD~cdC~~~WfH~~Cvgl~-~~p~~~w~Cp 50 (70)
T 1x4i_A 16 YGEMVGCDNQDCPIEWFHYGCVGLT-EAPKGKWYCP 50 (70)
T ss_dssp CSSEECCSCTTCSCCCEEHHHHTCS-SCCSSCCCCH
T ss_pred CCCEeEeCCCCCCccCCcccccccC-cCCCCCEECC
Confidence 3489999997 47865541 222 2236799985
Done!