Query 005167
Match_columns 710
No_of_seqs 353 out of 569
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 19:09:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0403 Neoplastic transformat 100.0 4E-156 8E-161 1238.0 55.1 621 71-702 5-641 (645)
2 KOG0403 Neoplastic transformat 100.0 8.1E-77 1.8E-81 632.0 29.6 348 62-410 280-632 (645)
3 smart00544 MA3 Domain in DAP-5 99.9 4.8E-23 1E-27 188.8 13.2 112 286-397 1-113 (113)
4 PF02847 MA3: MA3 domain; Int 99.9 8.4E-23 1.8E-27 186.8 13.0 112 122-233 1-113 (113)
5 PF02847 MA3: MA3 domain; Int 99.9 5.2E-23 1.1E-27 188.2 11.5 112 286-397 1-113 (113)
6 smart00544 MA3 Domain in DAP-5 99.9 1.8E-22 4E-27 184.9 13.2 112 122-233 1-113 (113)
7 KOG0401 Translation initiation 99.1 1.7E-10 3.7E-15 140.1 10.4 155 281-435 770-936 (970)
8 KOG0401 Translation initiation 99.0 1.1E-09 2.4E-14 133.2 10.2 160 116-277 769-931 (970)
9 PLN03218 maturation of RBCL 1; 97.8 0.052 1.1E-06 68.0 34.4 334 289-654 544-918 (1060)
10 PLN03077 Protein ECB2; Provisi 96.9 1.7 3.8E-05 53.3 35.6 28 126-153 124-151 (857)
11 PLN03218 maturation of RBCL 1; 96.9 0.73 1.6E-05 58.0 29.9 319 290-650 440-788 (1060)
12 PLN03077 Protein ECB2; Provisi 95.7 7.7 0.00017 47.7 37.0 142 290-448 225-381 (857)
13 PF04774 HABP4_PAI-RBP1: Hyalu 95.3 0.027 5.9E-07 51.3 5.2 29 59-88 5-34 (106)
14 PLN03081 pentatricopeptide (PP 95.2 6.9 0.00015 46.9 26.2 25 126-150 90-114 (697)
15 PLN03081 pentatricopeptide (PP 93.8 19 0.00042 43.1 33.3 184 291-484 263-454 (697)
16 PF04286 DUF445: Protein of un 88.0 28 0.0006 37.8 17.6 151 212-373 35-200 (367)
17 KOG3973 Uncharacterized conser 73.5 24 0.00052 38.9 9.9 188 201-434 8-217 (465)
18 KOG2066 Vacuolar assembly/sort 66.3 3.2E+02 0.007 33.7 18.9 240 290-620 458-697 (846)
19 KOG2066 Vacuolar assembly/sort 56.9 3.6E+02 0.0077 33.3 16.1 239 121-389 452-745 (846)
20 PF04286 DUF445: Protein of un 50.1 3.6E+02 0.0078 29.1 19.3 133 376-527 35-174 (367)
21 PF04844 Ovate: Transcriptiona 47.0 37 0.00079 28.3 4.4 47 118-164 4-52 (59)
22 PLN02591 tryptophan synthase 46.0 65 0.0014 34.2 7.3 89 607-697 32-139 (250)
23 PF06992 Phage_lambda_P: Repli 45.2 1.9E+02 0.0041 30.5 10.4 65 341-426 68-132 (233)
24 PF02854 MIF4G: MIF4G domain; 42.6 1.7E+02 0.0038 28.3 9.5 116 124-241 2-128 (209)
25 PRK13111 trpA tryptophan synth 42.4 64 0.0014 34.4 6.7 91 608-700 43-153 (258)
26 TIGR01446 DnaD_dom DnaD and ph 39.8 98 0.0021 25.9 6.2 41 319-359 31-72 (73)
27 PF04844 Ovate: Transcriptiona 39.7 60 0.0013 27.1 4.6 43 282-324 4-48 (59)
28 KOG2259 Uncharacterized conser 39.2 8.1E+02 0.017 30.0 17.0 210 294-511 203-463 (823)
29 PF08876 DUF1836: Domain of un 38.2 22 0.00048 32.9 2.1 61 618-678 42-105 (105)
30 KOG1831 Negative regulator of 36.8 6.4E+02 0.014 33.2 14.5 171 486-660 919-1127(1591)
31 TIGR02698 CopY_TcrY copper tra 36.5 2.8E+02 0.0061 26.3 9.4 87 341-444 7-96 (130)
32 PF05044 HPD: Homeo-prospero d 36.0 86 0.0019 30.7 5.7 71 353-433 38-117 (158)
33 TIGR01568 A_thal_3678 uncharac 34.4 1.6E+02 0.0034 25.2 6.3 48 117-164 9-59 (66)
34 KOG2562 Protein phosphatase 2 34.4 7.6E+02 0.016 28.8 13.6 239 154-398 153-415 (493)
35 PF02854 MIF4G: MIF4G domain; 32.6 3.2E+02 0.0069 26.5 9.6 116 422-539 2-128 (209)
36 PF10265 DUF2217: Uncharacteri 32.4 1.1E+02 0.0024 35.8 6.9 104 598-701 263-417 (514)
37 PF07149 Pes-10: Pes-10; Inte 31.9 3.3E+02 0.0072 30.7 10.1 94 126-223 212-312 (370)
38 KOG1943 Beta-tubulin folding c 31.4 6.5E+02 0.014 32.3 13.3 160 284-484 694-881 (1133)
39 PF12854 PPR_1: PPR repeat 31.0 69 0.0015 23.0 3.3 24 587-610 10-33 (34)
40 PLN02591 tryptophan synthase 30.7 1.5E+02 0.0033 31.5 7.2 90 311-402 33-139 (250)
41 TIGR01568 A_thal_3678 uncharac 30.3 1.5E+02 0.0033 25.3 5.6 46 281-327 9-57 (66)
42 PF09851 SHOCT: Short C-termin 29.8 1E+02 0.0022 22.1 3.9 26 341-366 5-30 (31)
43 PF08876 DUF1836: Domain of un 29.7 51 0.0011 30.5 3.0 62 321-382 42-104 (105)
44 PF12854 PPR_1: PPR repeat 29.4 77 0.0017 22.8 3.3 24 290-313 10-33 (34)
45 TIGR01446 DnaD_dom DnaD and ph 28.3 1.5E+02 0.0033 24.7 5.5 53 599-654 17-72 (73)
46 KOG3905 Dynein light intermedi 28.2 1.3E+02 0.0028 33.6 6.1 13 67-79 425-437 (473)
47 smart00543 MIF4G Middle domain 27.4 3.9E+02 0.0085 25.9 9.2 28 214-241 94-121 (200)
48 KOG1104 Nuclear cap-binding co 27.2 1.3E+03 0.027 28.6 15.0 183 95-295 8-241 (759)
49 TIGR00756 PPR pentatricopeptid 27.1 89 0.0019 21.0 3.3 24 291-314 4-27 (35)
50 PF01535 PPR: PPR repeat; Int 26.5 83 0.0018 20.9 3.0 24 588-611 4-27 (31)
51 cd07347 harmonin_N_like N-term 25.5 1.6E+02 0.0035 25.9 5.1 37 116-153 15-52 (78)
52 PRK13111 trpA tryptophan synth 24.5 2E+02 0.0044 30.6 6.8 101 296-398 16-146 (258)
53 PF12295 Symplekin_C: Sympleki 24.4 3.1E+02 0.0068 27.7 7.9 84 124-207 74-161 (183)
54 KOG3785 Uncharacterized conser 22.7 4.4E+02 0.0096 29.9 8.9 104 129-239 291-402 (557)
55 PF02399 Herpes_ori_bp: Origin 22.2 6.1E+02 0.013 31.7 10.8 167 274-464 404-574 (824)
56 KOG4749 Inositol polyphosphate 22.2 1.3E+02 0.0028 33.3 4.8 112 235-371 173-291 (375)
57 KOG3922 Sulfotransferases [Pos 21.9 50 0.0011 36.1 1.7 45 570-617 231-277 (361)
58 cd08307 Death_Pelle Death doma 21.8 1.7E+02 0.0037 26.7 4.9 79 508-617 18-96 (97)
59 KOG3396 Glucosamine-phosphate 21.8 1.1E+02 0.0024 29.9 3.7 36 339-374 20-55 (150)
60 PRK05989 cobN cobaltochelatase 21.6 1E+03 0.022 31.4 13.2 219 121-348 982-1238(1244)
61 PRK09498 sifA secreted effecto 21.5 1.5E+02 0.0033 32.2 5.0 27 290-316 30-56 (336)
62 TIGR00153 conserved hypothetic 21.5 8.7E+02 0.019 24.7 14.4 35 597-646 143-178 (216)
63 KOG1831 Negative regulator of 21.4 1.7E+03 0.037 29.6 14.5 174 187-365 918-1127(1591)
64 COG0177 Nth Predicted EndoIII- 21.1 9.6E+02 0.021 25.0 13.6 50 265-331 138-188 (211)
65 PF08785 Ku_PK_bind: Ku C term 20.5 52 0.0011 30.9 1.2 69 581-651 25-100 (120)
No 1
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-156 Score=1238.04 Aligned_cols=621 Identities=73% Similarity=1.063 Sum_probs=597.8
Q ss_pred CCCCCcccccccCcCccccccCCCCCCCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q 005167 71 VKKDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELG 150 (710)
Q Consensus 71 ~kk~G~ggk~~Wg~~~~~~~~~~lD~~DPNyds~~~~~~~~~~~~~~s~ee~~k~v~~ii~EYf~~~D~~Ea~~~lkEL~ 150 (710)
.+|-|.|||+|||...+ |.||||||++|++|.++.+++.-..++|+|++..||+|||++||+.-|+..++||+
T Consensus 5 ~~~~~~g~~~~wg~~~d-------~d~dp~~dtge~~~~lv~s~~~~pl~dykk~~~sii~eyfstgdv~vaa~dl~elg 77 (645)
T KOG0403|consen 5 SPKKGEGSKGTWGVLDD-------DDNDPNYDTGEEPYHLVGSPVSDPLSDYKKKAVSIIDEYFSTGDVVVAASDLKELG 77 (645)
T ss_pred ccccccCCCCccccccC-------CCCCCCCCCCCCcccccCCccCCcHHHHHHHHHHHHHHHccCCCchhhHHHHHHhc
Confidence 35567789999997766 44999999999999999999988999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcC
Q 005167 151 SSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDD 230 (710)
Q Consensus 151 ~p~~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~~vls~~~i~~Gf~~lL~~l~DL~lDiP~a~~~la~fiARaV~D~ 230 (710)
..+|||+||+++|++||||+++|+||+|.|||.||..+|+++||..||.+||++.+|+.+|||+|.++||-||||||+|+
T Consensus 78 ~seyhpyfvkrlvsmamdrhdkekemasvlls~lyadvi~p~qir~gf~~ll~s~ddl~vdipdavnvlalfiaraivdd 157 (645)
T KOG0403|consen 78 SSEYHPYFVKRLVSMAMDRHDKEKEMASVLLSALYADVIDPDQIRDGFIRLLESADDLAVDIPDAVNVLALFIARAIVDD 157 (645)
T ss_pred cccccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhcccceecCchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHhhhhhcCCCCchHHHHHHHHHhhhccCCCchhHHhhhhcCCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 005167 231 ILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCI 310 (710)
Q Consensus 231 ilp~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~~l~~~Wgg~~~~~~eelkkki~~lL~EYl~s~D~~EA~rcl 310 (710)
+|||.|+.+.+..+|.+++|+++++.|+++||++|||.+.++..|||.+.++++|+|+||+.+|.||..+||..|||||+
T Consensus 158 ilpp~fl~r~~k~lp~~skg~qV~~~aeksylsap~hae~ve~~wGg~~n~t~EEvK~kIn~~l~eyv~~getrea~rci 237 (645)
T KOG0403|consen 158 ILPPAFLKRAKKLLPDSSKGFQVINTAEKSYLSAPHHAELVELFWGGETNATVEEVKNKINGNLIEYVEIGETREACRCI 237 (645)
T ss_pred ccChHHHHHHHhhCCCcccchhHHHHHHhhccCCCchhhHHHhhhCCCccccHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcChHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccccHHHHHHHHHHH
Q 005167 311 RELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVA 390 (710)
Q Consensus 311 ~EL~~P~fhhelV~~ai~~alE~~~~~~~i~~LL~~L~~~~~is~~Q~~~Gf~rv~e~ldDi~LDvP~A~~~l~~~v~~~ 390 (710)
|+|.+|+||||.|++|++++||....+..+++||+.-...|+||++||.+||.|+.++++|+++|||.|...++.++.++
T Consensus 238 R~L~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka 317 (645)
T KOG0403|consen 238 RELGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKA 317 (645)
T ss_pred HHhCCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhccccccccccCcchhhhhhhhcccC
Confidence 99999999999999999999998877789999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCChhhhh-hhccCCCccccchhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCh
Q 005167 391 ISEGWLDASFMK-SLGEDGRVQQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKN 469 (710)
Q Consensus 391 ~~~g~l~~~~~~-~~~~~~~~~~~~~s~ee~kk~~~~il~EYf~~~D~~Ev~~~l~el~~p~~~~~~v~~~i~~alDrk~ 469 (710)
.+.||++.+..+ .....|+ ......|||.+.+||+|||.|||+.|++++|++||.|++++.|++++|++|||||+
T Consensus 318 ~s~gwl~e~s~k~~s~~~g~----~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~ 393 (645)
T KOG0403|consen 318 PSGGWLDENSFKETSVLPGD----SENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKN 393 (645)
T ss_pred CCCCccchhhhcccccCCCc----chHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccch
Confidence 999999965554 4444443 33489999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHH
Q 005167 470 REKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGS 549 (710)
Q Consensus 470 ~eREl~s~LLs~L~~~~ls~~~i~~Gf~~lL~~l~Dl~lDiP~a~~~La~fiARaV~Dd~l~p~~l~~~~~~~~~~~~g~ 549 (710)
+||||+|+|||+||.+++|++|+.+||.+||++++|+.||||+|++.||.||||||+|++|.|.+|+++.+++|+.+.|+
T Consensus 394 ~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~ 473 (645)
T KOG0403|consen 394 SEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGR 473 (645)
T ss_pred hHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccccccCC-CCcchHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCcHHHHHHHHHHHh
Q 005167 550 ETVRVARSLIAARHAGERLLRCWGGG-TGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAM 628 (710)
Q Consensus 550 ~~l~~A~~lL~~~h~~~rl~~~Wg~~-~g~~~~~lk~ki~~ll~EY~~s~D~~EA~rCv~eL~~p~fhhe~Vk~al~~al 628 (710)
+++++|++||+++|+++|++||||+| +||+|+++|+||.+||+||.++||+.|||+||+||+|||||||+||+||+|+|
T Consensus 474 et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~m 553 (645)
T KOG0403|consen 474 ETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVM 553 (645)
T ss_pred HHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999998 68999999999999999999999999999999999999999999999999999
Q ss_pred ccCch--HHHHHHHHHHHcCCCCHHHHHhHHHHHhhccchhhccccchHHHHHHHHHHHHHcC------------CCCCc
Q 005167 629 EKKND--RMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKG------------WLLPA 694 (710)
Q Consensus 629 E~~~~--~~~~LL~~l~~~~~it~~q~~~Gf~rv~~~ldDi~lDvP~A~~~l~~~v~~~~~~g------------~l~~~ 694 (710)
|++++ +|++||+.|+.+|+||.+||+|||.||++.|+|++||||+|++.|+.||+.|.++| |+...
T Consensus 554 Ekk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~G~i~~~l~~~~~s~l~~~ 633 (645)
T KOG0403|consen 554 EKKGDSTMILDLLKECFKSGLITTNQMTKGFERVYDSLPDLSLDVPNAYEKFERYVEECFQNGIISKQLRDLCPSRLRKR 633 (645)
T ss_pred HhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhccCcccccCCCcHHHHHHHHHHHHHHcCchhHHhhhcchhhhccc
Confidence 99987 89999999999999999999999999999999999999999999999999999999 77888
Q ss_pred cccCccCC
Q 005167 695 FGSCVADA 702 (710)
Q Consensus 695 ~~~~~~~~ 702 (710)
|..+....
T Consensus 634 F~se~~~~ 641 (645)
T KOG0403|consen 634 FVSEGDGG 641 (645)
T ss_pred cccCCCcc
Confidence 87765543
No 2
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-77 Score=632.01 Aligned_cols=348 Identities=41% Similarity=0.585 Sum_probs=327.2
Q ss_pred CCCCCC-CCCCCCCCcccccccCcCccccccCCCCCCCCCCCCCCCCcccccccCCCC---HHHHHHHHHHHHHHHhcCC
Q 005167 62 RSHSGK-LVRVKKDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDP---LDDYKKAVASIIEEYFSTG 137 (710)
Q Consensus 62 ~~~~~~-~~~~kk~G~ggk~~Wg~~~~~~~~~~lD~~DPNyds~~~~~~~~~~~~~~s---~ee~~k~v~~ii~EYf~~~ 137 (710)
.|++++ +|.|+++|++|++.|+-|..-+.-..+++++|||+-.++++.......+.. ...|+|..++||+|||.||
T Consensus 280 issSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsg 359 (645)
T KOG0403|consen 280 ISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSG 359 (645)
T ss_pred hhhhccccCchhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcC
Confidence 456665 999999999999999988766666778999999999877776555443333 7789999999999999999
Q ss_pred CHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhhcchhhHHH
Q 005167 138 DVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVD 217 (710)
Q Consensus 138 D~~Ea~~~lkEL~~p~~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~~vls~~~i~~Gf~~lL~~l~DL~lDiP~a~~ 217 (710)
|+.|+++||++||.|+|++.|++.+|+.|||||++||||+|+|||+|+..++|++|+.+||.+||++++|+.+|+|.|++
T Consensus 360 Dt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~ 439 (645)
T KOG0403|consen 360 DTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQ 439 (645)
T ss_pred ChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhHhhhhhcCCCCchHHHHHHHHHhhhccCCCchhHHhhhhcCC-CCCCHHHHHHHHHHHHHH
Q 005167 218 ILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGS-THITVEEVKKKIADLLRE 296 (710)
Q Consensus 218 ~la~fiARaV~D~ilp~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~~l~~~Wgg~-~~~~~eelkkki~~lL~E 296 (710)
-||.||||||.||+|.|.+|..+.+.+|+.+.|++++++|. +||++.|+.+|+.++|||| ++|+|+++|+||.+||+|
T Consensus 440 elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~Ar-sLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeE 518 (645)
T KOG0403|consen 440 ELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKAR-SLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEE 518 (645)
T ss_pred HHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHH-HHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999995 9999999999999999966 899999999999999999
Q ss_pred HHhcCCHHHHHHHHHHhCCCcChHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccc
Q 005167 297 YVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDI 376 (710)
Q Consensus 297 Yl~s~D~~EA~rcl~EL~~P~fhhelV~~ai~~alE~~~~~~~i~~LL~~L~~~~~is~~Q~~~Gf~rv~e~ldDi~LDv 376 (710)
|..+||+.|||+||+||++||||||+||+||+|+||++.+..+|++||+.|+++|+||.+||.+||.||+++|+||+|||
T Consensus 519 Y~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~dsl~DlsLDv 598 (645)
T KOG0403|consen 519 YELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERVYDSLPDLSLDV 598 (645)
T ss_pred HHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhccCcccccCC
Confidence 99999999999999999999999999999999999998777799999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHcCCCChhhhhhhccCCCc
Q 005167 377 PSARNLFQSIVPVAISEGWLDASFMKSLGEDGRV 410 (710)
Q Consensus 377 P~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~ 410 (710)
|+|++.|..+|..|.+.|+|...+..-.|+.+++
T Consensus 599 Pna~ekf~~~Ve~~~~~G~i~~~l~~~~~s~l~~ 632 (645)
T KOG0403|consen 599 PNAYEKFERYVEECFQNGIISKQLRDLCPSRLRK 632 (645)
T ss_pred CcHHHHHHHHHHHHHHcCchhHHhhhcchhhhcc
Confidence 9999999999999999998887777667777666
No 3
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=99.89 E-value=4.8e-23 Score=188.81 Aligned_cols=112 Identities=42% Similarity=0.573 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcChHHHHHHHHHHHhccC-CchHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005167 286 VKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIR-TAEPLILKLLKEAAEEGLISSSQMAKGFAR 364 (710)
Q Consensus 286 lkkki~~lL~EYl~s~D~~EA~rcl~EL~~P~fhhelV~~ai~~alE~~-~~~~~i~~LL~~L~~~~~is~~Q~~~Gf~r 364 (710)
++++|..+|+||++++|.+||++||++|++|+|||+||+.+|..++|++ ..++.++.||..|++++.++++||.+||.+
T Consensus 1 ~~k~i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~ 80 (113)
T smart00544 1 LKKKIFLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWR 80 (113)
T ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999986 788999999999999999999999999999
Q ss_pred HhhccccccccccccHHHHHHHHHHHHHcCCCC
Q 005167 365 LEESLDDLALDIPSARNLFQSIVPVAISEGWLD 397 (710)
Q Consensus 365 v~e~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~ 397 (710)
+++.++|+.+|+|+|+.++++|+++++.+|++|
T Consensus 81 ~~~~l~dl~~D~P~a~~~la~~~a~~v~~~~l~ 113 (113)
T smart00544 81 LLEDIEDLELDIPNAWRNLAEFVARLISDGILP 113 (113)
T ss_pred HHhhChhhhcccccHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999986
No 4
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=99.89 E-value=8.4e-23 Score=186.84 Aligned_cols=112 Identities=41% Similarity=0.592 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Q 005167 122 YKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DVISPDQIRDGFVI 200 (710)
Q Consensus 122 ~~k~v~~ii~EYf~~~D~~Ea~~~lkEL~~p~~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~-~vls~~~i~~Gf~~ 200 (710)
|+|++..+|.|||+++|.+||+.||++|+.|.+++.||..+|+.+||+++.+|++++.|++.|+. +.+++++|++||.+
T Consensus 1 ~rk~i~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~ 80 (113)
T PF02847_consen 1 LRKKIFSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFED 80 (113)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999996 99999999999999
Q ss_pred HHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCC
Q 005167 201 LLESADDLAVDILDAVDILALFVARAVVDDILP 233 (710)
Q Consensus 201 lL~~l~DL~lDiP~a~~~la~fiARaV~D~ilp 233 (710)
++++++|+.+|+|++|+++|+|++|+|.+|+||
T Consensus 81 ~l~~l~Dl~~D~P~~~~~la~~~~~~i~~~~lp 113 (113)
T PF02847_consen 81 LLESLEDLELDIPKAPEYLAKFLARLIADGILP 113 (113)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHHTTSS-
T ss_pred HHhHhhhccccchHHHHHHHHHHHHHHHcCCcC
Confidence 999999999999999999999999999999997
No 5
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=99.89 E-value=5.2e-23 Score=188.21 Aligned_cols=112 Identities=41% Similarity=0.589 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcChHHHHHHHHHHHhccC-CchHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 005167 286 VKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIR-TAEPLILKLLKEAAEEGLISSSQMAKGFAR 364 (710)
Q Consensus 286 lkkki~~lL~EYl~s~D~~EA~rcl~EL~~P~fhhelV~~ai~~alE~~-~~~~~i~~LL~~L~~~~~is~~Q~~~Gf~r 364 (710)
++++++.+|+||++++|.+||++||++|++|.+||+||+.+|..++|++ ..++.++.||.+|.+++++|++||.+||.+
T Consensus 1 ~rk~i~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~ 80 (113)
T PF02847_consen 1 LRKKIFSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFED 80 (113)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999985 788999999999999999999999999999
Q ss_pred HhhccccccccccccHHHHHHHHHHHHHcCCCC
Q 005167 365 LEESLDDLALDIPSARNLFQSIVPVAISEGWLD 397 (710)
Q Consensus 365 v~e~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~ 397 (710)
+++.++|+.+|+|++|+++++|+++++.+|+||
T Consensus 81 ~l~~l~Dl~~D~P~~~~~la~~~~~~i~~~~lp 113 (113)
T PF02847_consen 81 LLESLEDLELDIPKAPEYLAKFLARLIADGILP 113 (113)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHHTTSS-
T ss_pred HHhHhhhccccchHHHHHHHHHHHHHHHcCCcC
Confidence 999999999999999999999999999999986
No 6
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=99.88 E-value=1.8e-22 Score=184.91 Aligned_cols=112 Identities=46% Similarity=0.586 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Q 005167 122 YKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DVISPDQIRDGFVI 200 (710)
Q Consensus 122 ~~k~v~~ii~EYf~~~D~~Ea~~~lkEL~~p~~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~-~vls~~~i~~Gf~~ 200 (710)
++|++..+|+|||+++|.+||++||++|+.|.+++.||..+|+.+||+++.+|+++++||+.|+. +.+++++|++||..
T Consensus 1 ~~k~i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~ 80 (113)
T smart00544 1 LKKKIFLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWR 80 (113)
T ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999996 99999999999999
Q ss_pred HHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCC
Q 005167 201 LLESADDLAVDILDAVDILALFVARAVVDDILP 233 (710)
Q Consensus 201 lL~~l~DL~lDiP~a~~~la~fiARaV~D~ilp 233 (710)
+++.++|+++|+|++++++|.|+||+|.+|++|
T Consensus 81 ~~~~l~dl~~D~P~a~~~la~~~a~~v~~~~l~ 113 (113)
T smart00544 81 LLEDIEDLELDIPNAWRNLAEFVARLISDGILP 113 (113)
T ss_pred HHhhChhhhcccccHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999997
No 7
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.7e-10 Score=140.12 Aligned_cols=155 Identities=24% Similarity=0.289 Sum_probs=131.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcChHHHHHHHHHHHhccC-CchHHHHHHHHHHHHcCCCCHHHHH
Q 005167 281 ITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIR-TAEPLILKLLKEAAEEGLISSSQMA 359 (710)
Q Consensus 281 ~~~eelkkki~~lL~EYl~s~D~~EA~rcl~EL~~P~fhhelV~~ai~~alE~~-~~~~~i~~LL~~L~~~~~is~~Q~~ 359 (710)
.+.+++..+.++|++||++.++.+||..|+.+|+.|.+|+++|..+|...+++. ..+..++.||.+|+..+.++..++.
T Consensus 770 ~~~~~l~~~sk~l~ee~~~~~~~~~~~~~ie~l~S~~~~~~~v~~~v~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 849 (970)
T KOG0401|consen 770 LSSELLELLSKSLLEEFLSLRLEKEALKCIEELESPSLLLKTVGENIEPTLEKSPQAVEELLQLLDILVSKNPLSIETLE 849 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhhHHHHHHhcCcccccChhHHHHHHHHHHHHHhcCcccHHHHh
Confidence 345678999999999999999999999999999999999999999999999988 7788999999999999999999999
Q ss_pred HHHHHHhhccccccccccccHHHHHHHHHHHHHcCCCChh-----hhhhhccCCCc------cccchhHHHHHHHHHHHH
Q 005167 360 KGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDAS-----FMKSLGEDGRV------QQEDEKVKRYKEEVVTII 428 (710)
Q Consensus 360 ~Gf~rv~e~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~-----~~~~~~~~~~~------~~~~~s~ee~kk~~~~il 428 (710)
.||......++|+.+|+|++|.++++|+++.+..++++.+ +.......++. .......+.+.+.+..+-
T Consensus 850 ~~~~~~~~~~~d~~~d~pk~w~~~~e~~gp~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (970)
T KOG0401|consen 850 IGYREKFKLADDKELDLPKGWNYIKEFLGPLIHQKILDESELVREILKNMRPNGRRSNVLFSVLEIVEKELGRADLGDIQ 929 (970)
T ss_pred hhHHHHHhhhHHHhcccccchhHHHHhhhhHhhhccccHHHHHHHHhhcCCccccccchHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999853 22333333433 122334455666667776
Q ss_pred HHhhcCC
Q 005167 429 HEYFLSD 435 (710)
Q Consensus 429 ~EYf~~~ 435 (710)
.+.|.+.
T Consensus 930 ~~~~~s~ 936 (970)
T KOG0401|consen 930 RESFLST 936 (970)
T ss_pred HHhcccc
Confidence 6666654
No 8
>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.1e-09 Score=133.19 Aligned_cols=160 Identities=16% Similarity=0.127 Sum_probs=136.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh-CCCCHHHH
Q 005167 116 SDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DVISPDQI 194 (710)
Q Consensus 116 ~~s~ee~~k~v~~ii~EYf~~~D~~Ea~~~lkEL~~p~~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~-~vls~~~i 194 (710)
..+.+.+..+.+.|+.||+...+.+++..|+++++++.+++.+|...|+..+++++..|+..++||..|+. +.++..++
T Consensus 769 ~~~~~~l~~~sk~l~ee~~~~~~~~~~~~~ie~l~S~~~~~~~v~~~v~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 848 (970)
T KOG0401|consen 769 ALSSELLELLSKSLLEEFLSLRLEKEALKCIEELESPSLLLKTVGENIEPTLEKSPQAVEELLQLLDILVSKNPLSIETL 848 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhhHHHHHHhcCcccccChhHHHHHHHHHHHHHhcCcccHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999996 89999999
Q ss_pred HHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCChhhHhhhhhcCCCCchHHH--HHHHHHhhhccCCCchhHHh
Q 005167 195 RDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQ--VIQTAEKSYLSAPHHAELVE 272 (710)
Q Consensus 195 ~~Gf~~lL~~l~DL~lDiP~a~~~la~fiARaV~D~ilp~~~l~~~~~~~~~~~~g~~--~l~~a~~~lLs~~~~~~~l~ 272 (710)
..||...+..++|+.+|+|++|.|+++|+...|..+++....+.+....-.. ..|+. ++.-. -.+++...+..++.
T Consensus 849 ~~~~~~~~~~~~d~~~d~pk~w~~~~e~~gp~~~~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 926 (970)
T KOG0401|consen 849 EIGYREKFKLADDKELDLPKGWNYIKEFLGPLIHQKILDESELVREILKNMR-PNGRRSNVLFSV-LEIVEKELGRADLG 926 (970)
T ss_pred hhhHHHHHhhhHHHhcccccchhHHHHhhhhHhhhccccHHHHHHHHhhcCC-ccccccchHHHH-HHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999888876543211 11221 22211 12233344667888
Q ss_pred hhhcC
Q 005167 273 RRWGG 277 (710)
Q Consensus 273 ~~Wgg 277 (710)
.+|++
T Consensus 927 ~~~~~ 931 (970)
T KOG0401|consen 927 DIQRE 931 (970)
T ss_pred HHHHH
Confidence 88883
No 9
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.76 E-value=0.052 Score=67.96 Aligned_cols=334 Identities=14% Similarity=0.125 Sum_probs=173.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhC---CCcChHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCC----CCHHHHHHH
Q 005167 289 KIADLLREYVESGDAFEACRCIRELG---VSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGL----ISSSQMAKG 361 (710)
Q Consensus 289 ki~~lL~EYl~s~D~~EA~rcl~EL~---~P~fhhelV~~ai~~alE~~~~~~~i~~LL~~L~~~~~----is~~Q~~~G 361 (710)
-.+.+|.-|...|++++|.+.+.++. .+.....+++.++..++-+....+...+++..+.+.|+ .+-..+..|
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~a 623 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 35778888888899999998888873 22233456777777776555555667788888888876 444555555
Q ss_pred HHHHhhccccccccccccHHHHHH---------------HHHHHHHcCCCChh--hhhhhccCCCccccchhHHHHHHHH
Q 005167 362 FARLEESLDDLALDIPSARNLFQS---------------IVPVAISEGWLDAS--FMKSLGEDGRVQQEDEKVKRYKEEV 424 (710)
Q Consensus 362 f~rv~e~ldDi~LDvP~A~~~l~~---------------~v~~~~~~g~l~~~--~~~~~~~~~~~~~~~~s~ee~kk~~ 424 (710)
|.+.- ++-.|..++.+ ++..+...|-+... +...+...|.++ + ....
T Consensus 624 y~k~G--------~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p----d----~~ty 687 (1060)
T PLN03218 624 CSQKG--------DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL----G----TVSY 687 (1060)
T ss_pred HHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----C----HHHH
Confidence 54421 12233333333 23333333332211 111111111111 1 1135
Q ss_pred HHHHHHhhcCCCHHHHHHHHHhcCCCCChHHHHH-HHHHHHhcCChhHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHhh
Q 005167 425 VTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLK-KVITLAMDRKNREKEMASVLLSALHIE-IFSTEDIVNGFVMLLES 502 (710)
Q Consensus 425 ~~il~EYf~~~D~~Ev~~~l~el~~p~~~~~~v~-~~i~~alDrk~~eREl~s~LLs~L~~~-~ls~~~i~~Gf~~lL~~ 502 (710)
..+|.-|...|+.+++...++++......+..+. ..+..++-+ ...-+-+..++..+... +.+.......+...+..
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k-~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE-GNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 6778888888898888888888753222222221 222223322 23445566777777654 33333333333333333
Q ss_pred hhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHHHHHHHHH----HHHhcccccccccccccCC---
Q 005167 503 AEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVAR----SLIAARHAGERLLRCWGGG--- 575 (710)
Q Consensus 503 l~Dl~lDiP~a~~~La~fiARaV~Dd~l~p~~l~~~~~~~~~~~~g~~~l~~A~----~lL~~~h~~~rl~~~Wg~~--- 575 (710)
..++ -.|.++ +.+++..++-|-..+-+.. .+-+.+ -..+|. ..+.-.-+..+..+.|-.-
T Consensus 767 ~G~l----e~A~~l----~~~M~k~Gi~pd~~tynsL---Iglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 767 KDDA----DVGLDL----LSQAKEDGIKPNLVMCRCI---TGLCLR--RFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred CCCH----HHHHHH----HHHHHHcCCCCCHHHHHHH---HHHHHH--HHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 3322 122222 3333333433322221110 000000 011111 1111111222333334210
Q ss_pred -------CCcchHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhCC-CCCcHHHHHHHHHHHhccCchHHHHHHHHHHHcCC
Q 005167 576 -------TGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGM-PFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGL 647 (710)
Q Consensus 576 -------~g~~~~~lk~ki~~ll~EY~~s~D~~EA~rCv~eL~~-p~fhhe~Vk~al~~alE~~~~~~~~LL~~l~~~~~ 647 (710)
.|...+ ..-...+|.-++..++..++...+.+++. |.-.|...+..+....-+..++.+.||..+...|+
T Consensus 834 lf~eM~~~Gi~Pd--~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 834 VYRETISAGTLPT--MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHHCCCCCC--HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCC
Confidence 111111 01334566667788899999999999984 66677888888888875555678999999999999
Q ss_pred CCHHHHH
Q 005167 648 ITTNQMT 654 (710)
Q Consensus 648 it~~q~~ 654 (710)
++.-++.
T Consensus 912 ~p~~~~~ 918 (1060)
T PLN03218 912 VPSVSFK 918 (1060)
T ss_pred CCCcccc
Confidence 9887653
No 10
>PLN03077 Protein ECB2; Provisional
Probab=96.94 E-value=1.7 Score=53.25 Aligned_cols=28 Identities=7% Similarity=0.134 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhCCCC
Q 005167 126 VASIIEEYFSTGDVEVAASDLRELGSSE 153 (710)
Q Consensus 126 v~~ii~EYf~~~D~~Ea~~~lkEL~~p~ 153 (710)
...+|.-|...|++.+|..-+.++..|+
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~~~d 151 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMPERD 151 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCCCCC
Confidence 4677888999999999999999998776
No 11
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.86 E-value=0.73 Score=58.02 Aligned_cols=319 Identities=14% Similarity=0.147 Sum_probs=161.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhCCCcCh-HHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCC----CHHHHHHHHHH
Q 005167 290 IADLLREYVESGDAFEACRCIRELGVSFFH-HEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLI----SSSQMAKGFAR 364 (710)
Q Consensus 290 i~~lL~EYl~s~D~~EA~rcl~EL~~P~fh-helV~~ai~~alE~~~~~~~i~~LL~~L~~~~~i----s~~Q~~~Gf~r 364 (710)
.+.+|.=|...|++++|.+.++++.--.+. ..+++.++..+.-+....+....++..+.+.|+. |-.-|..||.+
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 345666677777777777766665321111 2455666665554444445556666666665543 33444444433
Q ss_pred HhhccccccccccccHHH---------------HHHHHHHHHHcCCCChhh--hhhhccCCCccccchhHHHHHHHHHHH
Q 005167 365 LEESLDDLALDIPSARNL---------------FQSIVPVAISEGWLDASF--MKSLGEDGRVQQEDEKVKRYKEEVVTI 427 (710)
Q Consensus 365 v~e~ldDi~LDvP~A~~~---------------l~~~v~~~~~~g~l~~~~--~~~~~~~~~~~~~~~s~ee~kk~~~~i 427 (710)
.- ++..|.++ +..++..+.+.|-++..+ ...+...+... .|. .-....+
T Consensus 520 ~G--------~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi--~PD----~vTynaL 585 (1060)
T PLN03218 520 AG--------QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI--DPD----HITVGAL 585 (1060)
T ss_pred Cc--------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC--CCc----HHHHHHH
Confidence 21 11222222 233333333444333211 11111100000 011 1234677
Q ss_pred HHHhhcCCCHHHHHHHHHhcCCCCChHH-HHHHHHHHHhcCChhHHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhhhh
Q 005167 428 IHEYFLSDDIPELIRSLEDLGAPEFNPI-FLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDT 506 (710)
Q Consensus 428 l~EYf~~~D~~Ev~~~l~el~~p~~~~~-~v~~~i~~alDrk~~eREl~s~LLs~L~~~~ls~~~i~~Gf~~lL~~l~Dl 506 (710)
|.-|...|+.+++...++++......+. .+-..+..++-+. ..-+.+-.++..+...-+.++.+ .|..+++.+...
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~-G~~deAl~lf~eM~~~Gv~PD~~--TynsLI~a~~k~ 662 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK-GDWDFALSIYDDMKKKGVKPDEV--FFSALVDVAGHA 662 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhC
Confidence 8889999999999888888764332221 1122222233332 34566777888887664444422 344444433322
Q ss_pred hhchhchHHHHHHHHHHHHHhccCCchh----hhHhhccCCCCCcHHHHHHHHHHHHhcccccccccccccCCCCcchHH
Q 005167 507 ALDILDASNELALFLARAVIDDVLAPLN----LEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGWAVED 582 (710)
Q Consensus 507 ~lDiP~a~~~La~fiARaV~Dd~l~p~~----l~~~~~~~~~~~~g~~~l~~A~~lL~~~h~~~rl~~~Wg~~~g~~~~~ 582 (710)
- ++-.|.+++..+.. .++-|-.. |-..+.... -++.|..++..- .. +| ...+
T Consensus 663 G-~~eeA~~l~~eM~k----~G~~pd~~tynsLI~ay~k~G-------~~eeA~~lf~eM------~~-~g----~~Pd- 718 (1060)
T PLN03218 663 G-DLDKAFEILQDARK----QGIKLGTVSYSSLMGACSNAK-------NWKKALELYEDI------KS-IK----LRPT- 718 (1060)
T ss_pred C-CHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHH------HH-cC----CCCC-
Confidence 1 33345555444332 23322221 212222111 123333333211 00 11 1111
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCc-HHHHHHHHHHHhccCch--HHHHHHHHHHHcCCCCH
Q 005167 583 AKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFN-HEVVKKALVMAMEKKND--RMLDLLQECFSEGLITT 650 (710)
Q Consensus 583 lk~ki~~ll~EY~~s~D~~EA~rCv~eL~~p~fh-he~Vk~al~~alE~~~~--~~~~LL~~l~~~~~it~ 650 (710)
..-.+.+|.-|...|+++||.+.++++..-.+. -.+.+..+..+..+... ....++.++...|+-+.
T Consensus 719 -vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 719 -VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 123678999999999999999999987543333 26777777777776654 56888888888887554
No 12
>PLN03077 Protein ECB2; Provisional
Probab=95.71 E-value=7.7 Score=47.68 Aligned_cols=142 Identities=13% Similarity=0.054 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhCCCcChHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCC----CHHHHHHHHHHH
Q 005167 290 IADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLI----SSSQMAKGFARL 365 (710)
Q Consensus 290 i~~lL~EYl~s~D~~EA~rcl~EL~~P~fhhelV~~ai~~alE~~~~~~~i~~LL~~L~~~~~i----s~~Q~~~Gf~rv 365 (710)
.+.+|.=|...|++++|.+.+.++..|. .+.+.++..++=+....+....++..+...|+. |-..+.+|+.+.
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~~~d---~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~ 301 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPRRD---CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCCCCC---cchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Confidence 5788999999999999999999998765 356777777765554445567888888887754 334455554432
Q ss_pred hhccccccccccccHHHHHHHHHHHHHcCCCChhhhhh----hccCCCccccchhHHHHH-------HHHHHHHHHhhcC
Q 005167 366 EESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKS----LGEDGRVQQEDEKVKRYK-------EEVVTIIHEYFLS 434 (710)
Q Consensus 366 ~e~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~----~~~~~~~~~~~~s~ee~k-------k~~~~il~EYf~~ 434 (710)
. |+..|.+++ ..++..|+.+..+.-. ........ +...+-|. -....+|.-|..+
T Consensus 302 ----g----~~~~a~~l~----~~~~~~g~~~d~~~~n~Li~~y~k~g~~--~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 302 ----G----DERLGREMH----GYVVKTGFAVDVSVCNSLIQMYLSLGSW--GEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred ----C----ChHHHHHHH----HHHHHhCCccchHHHHHHHHHHHhcCCH--HHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 2 233344333 3344445544322211 11111110 00001111 1245677788888
Q ss_pred CCHHHHHHHHHhcC
Q 005167 435 DDIPELIRSLEDLG 448 (710)
Q Consensus 435 ~D~~Ev~~~l~el~ 448 (710)
|+.+++...++++.
T Consensus 368 g~~~~A~~lf~~M~ 381 (857)
T PLN03077 368 GLPDKALETYALME 381 (857)
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888887753
No 13
>PF04774 HABP4_PAI-RBP1: Hyaluronan / mRNA binding family; InterPro: IPR006861 This entry includes the HABP4 protein family of hyaluronan-binding proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1. HABP4 has been observed to bind hyaluronan (a glucosaminoglycan), but it is not known whether this is its primary role in vivo. It has also been observed to bind RNA, but with a lower affinity than that for hyaluronan []. PAI-1 mRNA-binding protein specifically binds the mRNA of type-1 plasminogen activator inhibitor (PAI-1), and is thought to be involved in regulation of mRNA stability []. However, in both cases, the sequence motifs predicted to be important for ligand binding are not conserved throughout the family, so it is not known whether members of this family share a common function. Hyaluronan/mRNA-binding protein may be involved in nuclear functions such as the remodeling of chromatin and the regulation of transcription [, ].
Probab=95.35 E-value=0.027 Score=51.31 Aligned_cols=29 Identities=38% Similarity=0.573 Sum_probs=23.5
Q ss_pred cCCCCCCCCC-CCCCCCCcccccccCcCccc
Q 005167 59 HVRRSHSGKL-VRVKKDGAGGKGTWGKLLDT 88 (710)
Q Consensus 59 ~~r~~~~~~~-~~~kk~G~ggk~~Wg~~~~~ 88 (710)
.||||.+|+. ...||+|+ |++.||.+.++
T Consensus 5 fDR~Sgs~r~~~~~Kk~G~-G~~NWG~~~de 34 (106)
T PF04774_consen 5 FDRHSGSGRTKSEDKKGGG-GAHNWGSPKDE 34 (106)
T ss_pred ccCCCCCCCCCCccCCCCc-cccCCCCccch
Confidence 3899999987 66677665 99999998765
No 14
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.16 E-value=6.9 Score=46.91 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhC
Q 005167 126 VASIIEEYFSTGDVEVAASDLRELG 150 (710)
Q Consensus 126 v~~ii~EYf~~~D~~Ea~~~lkEL~ 150 (710)
...+|..|-..|+..+|...++.+.
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~ 114 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILE 114 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5567888888999999988887764
No 15
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.81 E-value=19 Score=43.14 Aligned_cols=184 Identities=11% Similarity=0.080 Sum_probs=98.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhCCCcChHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccc
Q 005167 291 ADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLD 370 (710)
Q Consensus 291 ~~lL~EYl~s~D~~EA~rcl~EL~~P~fhhelV~~ai~~alE~~~~~~~i~~LL~~L~~~~~is~~Q~~~Gf~rv~e~ld 370 (710)
+.++.=|...|++++|.+-++++..|. .+.+.++..+.-+....+....++..+.+.|+-........+.+.+-.+.
T Consensus 263 n~Li~~y~k~g~~~~A~~vf~~m~~~~---~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 263 CALIDMYSKCGDIEDARCVFDGMPEKT---TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 678999999999999999999997653 56777887777655555667888888888776533322222222222222
Q ss_pred cccccccccHHHHHHHHHHHHHcCCCChhhhhhhccCCCccccchhHHHHH-------HHHHHHHHHhhcCCCHHHHHHH
Q 005167 371 DLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYK-------EEVVTIIHEYFLSDDIPELIRS 443 (710)
Q Consensus 371 Di~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~~~~~~s~ee~k-------k~~~~il~EYf~~~D~~Ev~~~ 443 (710)
++..|.++++.++...+......-+.+-......... +...+-|. ...+.+|.-|..+|+.+++...
T Consensus 340 ----~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~--~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 340 ----LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM--EDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred ----chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH--HHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHH
Confidence 2334555555444332111111111111111111110 01111121 1346788889999999999988
Q ss_pred HHhcCCCCChHHHHH-HHHHHHhcCChhHHHHHHHHHHHHHh
Q 005167 444 LEDLGAPEFNPIFLK-KVITLAMDRKNREKEMASVLLSALHI 484 (710)
Q Consensus 444 l~el~~p~~~~~~v~-~~i~~alDrk~~eREl~s~LLs~L~~ 484 (710)
++++..-...|..+. ..+..+.-+.. .-+-+-+++..+..
T Consensus 414 f~~M~~~g~~Pd~~T~~~ll~a~~~~g-~~~~a~~~f~~m~~ 454 (697)
T PLN03081 414 FERMIAEGVAPNHVTFLAVLSACRYSG-LSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence 888654333333222 22333443332 23345555665543
No 16
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=88.00 E-value=28 Score=37.82 Aligned_cols=151 Identities=21% Similarity=0.220 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHHHHHHhcCCCChhhHhhhhhcCCCCchHHHHHHHHHhhhccCCCch--------hHHhhhhcCCCCCCH
Q 005167 212 ILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHA--------ELVERRWGGSTHITV 283 (710)
Q Consensus 212 iP~a~~~la~fiARaV~D~ilp~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~--------~~l~~~Wgg~~~~~~ 283 (710)
+|.=.+-+|.=+++.|.+++|++..+.+...... -...+.+ ++..+.+. ..+..++.. ...
T Consensus 35 ip~~r~~~~~~~~~~v~~~ll~~~~i~~~l~~~~---~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~---~~~ 103 (367)
T PF04286_consen 35 IPKNRERIAESIGEMVENELLTPETIRRKLESED---FSERLIE-----WLQDPENREKLRRILAELLEEILEK---IDQ 103 (367)
T ss_pred ccccHHHHHHHHHHHHHHHCCCHHHHHHHHhccc---HHHHHHH-----HHhchhhhHHHHHHHHHHHHHHhhh---hhh
Confidence 7888999999999999999999999988765421 1111111 11111111 123333333 233
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHH-HHHHhCCCcChHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHcCCCC--HHH
Q 005167 284 EEVKKKIADLLREYVESGDAFEACR-CIRELGVSFFHHEVVKRALVLAME---IRTAEPLILKLLKEAAEEGLIS--SSQ 357 (710)
Q Consensus 284 eelkkki~~lL~EYl~s~D~~EA~r-cl~EL~~P~fhhelV~~ai~~alE---~~~~~~~i~~LL~~L~~~~~is--~~Q 357 (710)
+.+.+-++..+..++...+...... .++.+-.+..|+.++...+....+ ....++.+.+++.....+..-+ .+.
T Consensus 104 ~~i~~~i~~~~~~~l~~~~~~~~~~~~l~~ll~~~~~~~l~~~il~~i~~~l~~~e~~~~I~~~i~~~~~~~~~~~~~~~ 183 (367)
T PF04286_consen 104 EKIAEFIEKNLRKKLSEIILAPLLQKLLRSLLEEEQHQKLLDRILEKIKEYLKSEETRERIRDLIEEFLEEYLGKSFLDK 183 (367)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcccchhhH
Confidence 4555555555555555555554443 334444455677666666654433 2234456777777777665444 555
Q ss_pred HHHHHHHH-hhcccccc
Q 005167 358 MAKGFARL-EESLDDLA 373 (710)
Q Consensus 358 ~~~Gf~rv-~e~ldDi~ 373 (710)
+...|..- ...++++.
T Consensus 184 l~~~i~~~l~~~l~~l~ 200 (367)
T PF04286_consen 184 LAEKIQDELDSLLEKLQ 200 (367)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555554 33344443
No 17
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=73.50 E-value=24 Score=38.95 Aligned_cols=188 Identities=15% Similarity=0.211 Sum_probs=92.6
Q ss_pred HHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCChhhHhhhhhcCCCCchHHHHHHHHHhhhccCCCchhHHhhhhcCCCC
Q 005167 201 LLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWGGSTH 280 (710)
Q Consensus 201 lL~~l~DL~lDiP~a~~~la~fiARaV~D~ilp~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~~l~~~Wgg~~~ 280 (710)
|+++|.||..--|.-.+ .-+.||+..|+++|.|-....-. +.-..+|.+.+ -+..
T Consensus 8 lvdslk~l~~qg~~~k~---~~lsral~ag~~spdf~~~i~wl----~~Elr~L~k~e-E~V~----------------- 62 (465)
T KOG3973|consen 8 LVDSLKALSFQGHCQKQ---ENLSRALMAGGISPDFANQIIWL----CAELRELYKIE-EYVR----------------- 62 (465)
T ss_pred HHHHHHHhccCCcccch---hhHHHHHHcCCCChhHHHHHHHH----HHHHHHHHHHH-HHhc-----------------
Confidence 56667777666665544 34789999999998775543321 12233333332 1111
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcChHHHHHHHHHHHhccC-CchHHHHHHHHHHHHcCCCCHHHH-
Q 005167 281 ITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIR-TAEPLILKLLKEAAEEGLISSSQM- 358 (710)
Q Consensus 281 ~~~eelkkki~~lL~EYl~s~D~~EA~rcl~EL~~P~fhhelV~~ai~~alE~~-~~~~~i~~LL~~L~~~~~is~~Q~- 358 (710)
.--+..++||+. |....|-||+||+ .|++.--|..-+-.. +..-++..|..+|-....|+..+.
T Consensus 63 -------q~~~~~~~eF~~-----elS~lL~El~CPy--~eLt~Gdi~~Rf~s~~a~~lLlsyL~SEl~tarmi~~~~p~ 128 (465)
T KOG3973|consen 63 -------QPNDHNLLEFLY-----ELSTLLLELECPY--EELTCGDIRTRFQSSSAKKLLLSYLDSELKTARMITRQRPE 128 (465)
T ss_pred -------CCChhhHHHHHH-----HHHHHHHHcCCch--HhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 113344556643 5666788899997 356555554444322 111122222222333333333322
Q ss_pred ------HHHHHHHhhcccccccc--ccc------cHHHHHHHHHHHHHcCCCChhhhhhhccC------CCccccchhHH
Q 005167 359 ------AKGFARLEESLDDLALD--IPS------ARNLFQSIVPVAISEGWLDASFMKSLGED------GRVQQEDEKVK 418 (710)
Q Consensus 359 ------~~Gf~rv~e~ldDi~LD--vP~------A~~~l~~~v~~~~~~g~l~~~~~~~~~~~------~~~~~~~~s~e 418 (710)
.++=..|...++-+++| .|+ -|.+|+.+-.+. ++ . ++..++. -+|+..+-+-+
T Consensus 129 ~p~~~~ek~d~ev~q~i~~~~~~L~~~k~p~Nin~~~lfe~i~~kl--~~----a-i~kv~p~~~~~PLlKkpl~~a~w~ 201 (465)
T KOG3973|consen 129 SPEIVSEKRDLEVTQLIDSALRTLNFPKQPGNINEWKLFETIRQKL--DG----A-IKKVSPSQRSHPLLKKPLDEATWP 201 (465)
T ss_pred CCccccccCCchHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHH--Hh----H-HhcCCHhhcCCchhcCcCChhhHH
Confidence 11111222222222222 232 345555554441 22 1 1222211 22466667788
Q ss_pred HHHHHHHHHHHHhhcC
Q 005167 419 RYKEEVVTIIHEYFLS 434 (710)
Q Consensus 419 e~kk~~~~il~EYf~~ 434 (710)
++++..+++-.||++.
T Consensus 202 ~iE~~~~~~~~ey~~R 217 (465)
T KOG3973|consen 202 EIEKQCESFSREYYNR 217 (465)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999999864
No 18
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.28 E-value=3.2e+02 Score=33.65 Aligned_cols=240 Identities=15% Similarity=0.166 Sum_probs=128.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhCCCcChHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhcc
Q 005167 290 IADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESL 369 (710)
Q Consensus 290 i~~lL~EYl~s~D~~EA~rcl~EL~~P~fhhelV~~ai~~alE~~~~~~~i~~LL~~L~~~~~is~~Q~~~Gf~rv~e~l 369 (710)
-..+|-||+. -|.......+++-.--.|--..|..|+.--+.+.+....+.++|.+|.-- ..|+.++|.+.+..-
T Consensus 458 YemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~----d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 458 YEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLY----DNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHH----ccChHHHHHHHHhcc
Confidence 4567888888 89999999999987433333333333333333334445777777777633 457888888888766
Q ss_pred ccccccccccHHHHHHHHHHHHHcCCCChhhhhhhccCCCccccchhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhcCC
Q 005167 370 DDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGA 449 (710)
Q Consensus 370 dDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~~~~~~s~ee~kk~~~~il~EYf~~~D~~Ev~~~l~el~~ 449 (710)
+--.+|+=.-+.++.+.-+.-+.---++.. |+ ..++-+--.+--..+|+..+. ..
T Consensus 533 ~~~vf~lI~k~nL~d~i~~~Iv~Lmll~sk----------------------ka-~~lLldn~d~ip~a~Vveql~--~~ 587 (846)
T KOG2066|consen 533 DKDVFDLIKKHNLFDQIKDQIVLLMLLDSK----------------------KA-IDLLLDNRDSISPSEVVEQLE--DN 587 (846)
T ss_pred ChHHHHHHHHHhhHHHHHHHHHHHHccchh----------------------hH-HHHHhhccccCCHHHHHHHHh--cC
Confidence 555555554454444444433332222111 11 112222222223455665555 44
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHhcc
Q 005167 450 PEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDV 529 (710)
Q Consensus 450 p~~~~~~v~~~i~~alDrk~~eREl~s~LLs~L~~~~ls~~~i~~Gf~~lL~~l~Dl~lDiP~a~~~La~fiARaV~Dd~ 529 (710)
|.+.+-+...+......-...-.++.-.|-+.+ |. --+
T Consensus 588 P~~l~~YL~kl~~rd~~~~~~y~dk~I~LYAEy--------------------------Dr----------------k~L 625 (846)
T KOG2066|consen 588 PKLLYCYLHKLFKRDHFMGSEYHDKQIELYAEY--------------------------DR----------------KKL 625 (846)
T ss_pred hHHHHHHHHHHhhcCccccchhhhHHHHHHHHH--------------------------hH----------------hhh
Confidence 554444444443332222222223222222222 11 112
Q ss_pred CCchhhhHhhccCCCCCcHHHHHHHHHHHHhcccccccccccccCCCCcchHHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 005167 530 LAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRD 609 (710)
Q Consensus 530 l~p~~l~~~~~~~~~~~~g~~~l~~A~~lL~~~h~~~rl~~~Wg~~~g~~~~~lk~ki~~ll~EY~~s~D~~EA~rCv~e 609 (710)
| -||.+... . -+++|..+=+.+.=.+-+..+||--| +.++..+.++.|| +|+++|.+.++|
T Consensus 626 L--PFLr~s~~-----Y----~lekA~eiC~q~~~~~E~VYlLgrmG-----n~k~AL~lII~el---~die~AIefvKe 686 (846)
T KOG2066|consen 626 L--PFLRKSQN-----Y----NLEKALEICSQKNFYEELVYLLGRMG-----NAKEALKLIINEL---RDIEKAIEFVKE 686 (846)
T ss_pred h--HHHHhcCC-----C----CHHHHHHHHHhhCcHHHHHHHHHhhc-----chHHHHHHHHHHh---hCHHHHHHHHHh
Confidence 2 24443111 1 23455555554444455667888655 5778888889987 689999999999
Q ss_pred hCCCCCcHHHH
Q 005167 610 LGMPFFNHEVV 620 (710)
Q Consensus 610 L~~p~fhhe~V 620 (710)
-+-+..+-.++
T Consensus 687 q~D~eLWe~LI 697 (846)
T KOG2066|consen 687 QDDSELWEDLI 697 (846)
T ss_pred cCCHHHHHHHH
Confidence 88776655443
No 19
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.89 E-value=3.6e+02 Score=33.31 Aligned_cols=239 Identities=17% Similarity=0.205 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005167 121 DYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVI 200 (710)
Q Consensus 121 e~~k~v~~ii~EYf~~~D~~Ea~~~lkEL~~p~~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~~vls~~~i~~Gf~~ 200 (710)
-+++.+-.++--+|-..|.....+.++++-..-|....+...+.-=+..+...+ ...++|.+||- =..++.+||..
T Consensus 452 rL~p~vYemvLve~L~~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~-~L~e~La~LYl---~d~~Y~~Al~~ 527 (846)
T KOG2066|consen 452 RLKPLVYEMVLVEFLASDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSEST-ALLEVLAHLYL---YDNKYEKALPI 527 (846)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccch-hHHHHHHHHHH---HccChHHHHHH
Confidence 466665555444444499999999999974433444444444433333344443 44555888883 22356666665
Q ss_pred HHhhhhhhhcchhhHHHHHH---HHH-----------HHHHhc--CCCChhhHhhhhhcCCC-----------------C
Q 005167 201 LLESADDLAVDILDAVDILA---LFV-----------ARAVVD--DILPPAFLTRAKKTLPA-----------------A 247 (710)
Q Consensus 201 lL~~l~DL~lDiP~a~~~la---~fi-----------ARaV~D--~ilp~~~l~~~~~~~~~-----------------~ 247 (710)
.+.-.+-...|+=.-....- .-| ++...| +.+||++|-......|. +
T Consensus 528 ylklk~~~vf~lI~k~nL~d~i~~~Iv~Lmll~skka~~lLldn~d~ip~a~Vveql~~~P~~l~~YL~kl~~rd~~~~~ 607 (846)
T KOG2066|consen 528 YLKLQDKDVFDLIKKHNLFDQIKDQIVLLMLLDSKKAIDLLLDNRDSISPSEVVEQLEDNPKLLYCYLHKLFKRDHFMGS 607 (846)
T ss_pred HHhccChHHHHHHHHHhhHHHHHHHHHHHHccchhhHHHHHhhccccCCHHHHHHHHhcChHHHHHHHHHHhhcCccccc
Confidence 55544444433332222111 111 111122 35677666554332111 1
Q ss_pred chHHH-HHHHHH---hhhc-----------------cCCCc-hhHHhhhhcCCCCCCHHHHHHHHHHHHHHHHhcCCHHH
Q 005167 248 SKGFQ-VIQTAE---KSYL-----------------SAPHH-AELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFE 305 (710)
Q Consensus 248 ~~g~~-~l~~a~---~~lL-----------------s~~~~-~~~l~~~Wgg~~~~~~eelkkki~~lL~EYl~s~D~~E 305 (710)
..+-. +..-|+ +++| +.+.| .+-+-.+||--+ +.++..+.++.|| +|++.
T Consensus 608 ~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmG-----n~k~AL~lII~el---~die~ 679 (846)
T KOG2066|consen 608 EYHDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMG-----NAKEALKLIINEL---RDIEK 679 (846)
T ss_pred hhhhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhc-----chHHHHHHHHHHh---hCHHH
Confidence 11111 111121 2222 11122 233667888433 4678888889887 68999
Q ss_pred HHHHHHHhCCCcChHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccccHHHHHH
Q 005167 306 ACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQS 385 (710)
Q Consensus 306 A~rcl~EL~~P~fhhelV~~ai~~alE~~~~~~~i~~LL~~L~~~~~is~~Q~~~Gf~rv~e~ldDi~LDvP~A~~~l~~ 385 (710)
|++.++|=+=|.++-.+ |.-++++. +.+.+||. +++...-. -++.-++| -++||+-...|.+
T Consensus 680 AIefvKeq~D~eLWe~L----I~~~ldkP---e~~~~ll~------i~~~~dpl----~ii~kip~-g~~IPnLrdsl~K 741 (846)
T KOG2066|consen 680 AIEFVKEQDDSELWEDL----INYSLDKP---EFIKALLN------IGEHEDPL----LIIRKIPD-GLEIPNLRDSLVK 741 (846)
T ss_pred HHHHHHhcCCHHHHHHH----HHHhhcCc---HHHHHHHH------hhhcccHH----HHHhcCCC-CCCCccHHHHHHH
Confidence 99999998877666554 55667665 34555544 22221111 22233333 3689999888888
Q ss_pred HHHH
Q 005167 386 IVPV 389 (710)
Q Consensus 386 ~v~~ 389 (710)
++.-
T Consensus 742 il~d 745 (846)
T KOG2066|consen 742 ILQD 745 (846)
T ss_pred HHHh
Confidence 7764
No 20
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=50.14 E-value=3.6e+02 Score=29.11 Aligned_cols=133 Identities=11% Similarity=0.151 Sum_probs=71.7
Q ss_pred ccccHHHHHHHHHHHHHcCCCChhhhhhhccCCCc------ccc-chhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhcC
Q 005167 376 IPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRV------QQE-DEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLG 448 (710)
Q Consensus 376 vP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~------~~~-~~s~ee~kk~~~~il~EYf~~~D~~Ev~~~l~el~ 448 (710)
||.-++.+++=++..+...+|+++.+.+.-....- +.. ....+.+......++.+++..-+.+.+...+..
T Consensus 35 ip~~r~~~~~~~~~~v~~~ll~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~i~~-- 112 (367)
T PF04286_consen 35 IPKNRERIAESIGEMVENELLTPETIRRKLESEDFSERLIEWLQDPENREKLRRILAELLEEILEKIDQEKIAEFIEK-- 112 (367)
T ss_pred ccccHHHHHHHHHHHHHHHCCCHHHHHHHHhcccHHHHHHHHHhchhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHH--
Confidence 68889999999999999999997776554333211 122 233344455555566666665555544444333
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhccCChHHHHHHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHh
Q 005167 449 APEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVID 527 (710)
Q Consensus 449 ~p~~~~~~v~~~i~~alDrk~~eREl~s~LLs~L~~~~ls~~~i~~Gf~~lL~~l~Dl~lDiP~a~~~La~fiARaV~D 527 (710)
.+...+.. ...+.+++.+...++........++.+++.+.+.. +-|...+.+..++...+.+
T Consensus 113 -----------~~~~~l~~-----~~~~~~~~~~l~~ll~~~~~~~l~~~il~~i~~~l-~~~e~~~~I~~~i~~~~~~ 174 (367)
T PF04286_consen 113 -----------NLRKKLSE-----IILAPLLQKLLRSLLEEEQHQKLLDRILEKIKEYL-KSEETRERIRDLIEEFLEE 174 (367)
T ss_pred -----------HHHHHHHH-----hccchhHHHHHHHHHhccchHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHH
Confidence 11111111 11112222222223455556666666666666543 3366666666666555443
No 21
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=46.99 E-value=37 Score=28.30 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHhhCCCCChHHHHHHHHH
Q 005167 118 PLDDYKKAVASIIEEYF--STGDVEVAASDLRELGSSEYHPYFIKRLVS 164 (710)
Q Consensus 118 s~ee~~k~v~~ii~EYf--~~~D~~Ea~~~lkEL~~p~~~~~~v~~~V~ 164 (710)
+.++|++.+..+|.|-- .-.|++|-..|.=.||.+.+|..+|+.+..
T Consensus 4 P~~DFr~SM~EMI~~~~i~~~~~LeeLL~cYL~LN~~~~H~~Iv~aF~d 52 (59)
T PF04844_consen 4 PYEDFRESMVEMIEENGIRDWDDLEELLACYLSLNSPEHHKFIVEAFVD 52 (59)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCChhhhhHHHHHHHH
Confidence 36899999998888764 335889999999999999999988877665
No 22
>PLN02591 tryptophan synthase
Probab=46.00 E-value=65 Score=34.24 Aligned_cols=89 Identities=22% Similarity=0.379 Sum_probs=67.6
Q ss_pred HHhhCCCCCcH----HHHHHHHHHHhccCc--hHHHHHHHHHHHcCCCC------HHH-HHhHHHHHhhccchhhc----
Q 005167 607 IRDLGMPFFNH----EVVKKALVMAMEKKN--DRMLDLLQECFSEGLIT------TNQ-MTKGFTRIKDGLDDLAL---- 669 (710)
Q Consensus 607 v~eL~~p~fhh----e~Vk~al~~alE~~~--~~~~~LL~~l~~~~~it------~~q-~~~Gf~rv~~~ldDi~l---- 669 (710)
+=||++||-.+ .++++|-..|++... +.++++++.+-.+--+. -+. +..|+.|+++.+.+.-+
T Consensus 32 ~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gvi 111 (250)
T PLN02591 32 VIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLV 111 (250)
T ss_pred EEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEE
Confidence 45789999877 899999999999884 46889988887431111 233 34499999999999888
Q ss_pred --cccchHHHHHHHHHHHHHcCCCCCcccc
Q 005167 670 --DIPNAKEKFTFYVEYARKKGWLLPAFGS 697 (710)
Q Consensus 670 --DvP~A~~~l~~~v~~~~~~g~l~~~~~~ 697 (710)
|+| ++..+.+.+.|.+.|+=.--+..
T Consensus 112 ipDLP--~ee~~~~~~~~~~~gl~~I~lv~ 139 (250)
T PLN02591 112 VPDLP--LEETEALRAEAAKNGIELVLLTT 139 (250)
T ss_pred eCCCC--HHHHHHHHHHHHHcCCeEEEEeC
Confidence 777 48888999999998875554443
No 23
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=45.18 E-value=1.9e+02 Score=30.55 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHcCCCChhhhhhhccCCCccccchhHHHH
Q 005167 341 LKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRY 420 (710)
Q Consensus 341 ~~LL~~L~~~~~is~~Q~~~Gf~rv~e~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~~~~~~s~ee~ 420 (710)
-.-+..+.+.|+-|.+|+..|+.+.-.+-.|. .|.. ++||.-|...+..... .|+.+|+
T Consensus 68 r~Wi~~f~engI~t~eQv~~Gm~~aR~~~spF---~PS~----GqFI~WCk~~~~~~lG--------------LP~~del 126 (233)
T PF06992_consen 68 RQWIKAFAENGITTMEQVRAGMRRARASESPF---WPSP----GQFIAWCKPGDYEALG--------------LPSVDEL 126 (233)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCC---CCCh----hHHHHHHhcchHHhcC--------------CCCHHHH
Confidence 34567889999999999999999998874432 3443 7888888765543222 3677776
Q ss_pred HHHHHH
Q 005167 421 KEEVVT 426 (710)
Q Consensus 421 kk~~~~ 426 (710)
-..+..
T Consensus 127 ~~~~~~ 132 (233)
T PF06992_consen 127 YQRYKR 132 (233)
T ss_pred HHHHHH
Confidence 655544
No 24
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=42.58 E-value=1.7e+02 Score=28.34 Aligned_cols=116 Identities=12% Similarity=0.047 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhCCCC---ChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh-CC-CCHHHHHHHH
Q 005167 124 KAVASIIEEYFSTGDVEVAASDLRELGSSE---YHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DV-ISPDQIRDGF 198 (710)
Q Consensus 124 k~v~~ii~EYf~~~D~~Ea~~~lkEL~~p~---~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~-~v-ls~~~i~~Gf 198 (710)
|+++.++...- .++.+..+..+..+.... ....++..+++.+.+.. .-..+.++|...|+. .. -=...+...+
T Consensus 2 r~v~~~lnklt-~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~-~~~~~~a~l~~~l~~~~~~~f~~~ll~~~ 79 (209)
T PF02854_consen 2 RKVRGILNKLT-PSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEP-NFSPLYARLCAALNSRFPSEFRSLLLNRC 79 (209)
T ss_dssp HHHHHHHHHCS-STTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSG-GGHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred chHHHHHHHCC-HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCc-hHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 56666666655 777888888887766654 67777777777777665 345677788777775 21 1112333333
Q ss_pred HHHHhh------hhhhhcchhhHHHHHHHHHHHHHhcCCCChhhHhhhh
Q 005167 199 VILLES------ADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAK 241 (710)
Q Consensus 199 ~~lL~~------l~DL~lDiP~a~~~la~fiARaV~D~ilp~~~l~~~~ 241 (710)
..-+.. .++..--.-.-+.-...|+|-...-++++...+....
T Consensus 80 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l 128 (209)
T PF02854_consen 80 QEEFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDIL 128 (209)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHH
Confidence 333333 3333333344456678899999999999988777643
No 25
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=42.38 E-value=64 Score=34.35 Aligned_cols=91 Identities=21% Similarity=0.297 Sum_probs=68.6
Q ss_pred HhhCCCCCcH----HHHHHHHHHHhccCc--hHHHHHHHHHHHcCCCCH-------HHHHh-HHHHHhhccchhhc----
Q 005167 608 RDLGMPFFNH----EVVKKALVMAMEKKN--DRMLDLLQECFSEGLITT-------NQMTK-GFTRIKDGLDDLAL---- 669 (710)
Q Consensus 608 ~eL~~p~fhh----e~Vk~al~~alE~~~--~~~~~LL~~l~~~~~it~-------~q~~~-Gf~rv~~~ldDi~l---- 669 (710)
=||++||-.+ .++++|-..||+..- +.++++++.+-....=++ +.+.+ |+.++++.+.+...
T Consensus 43 iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGvi 122 (258)
T PRK13111 43 IELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLI 122 (258)
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEE
Confidence 3678899877 899999999999884 368888888874422122 55455 99999999999888
Q ss_pred --cccchHHHHHHHHHHHHHcCCCCCccccCcc
Q 005167 670 --DIPNAKEKFTFYVEYARKKGWLLPAFGSCVA 700 (710)
Q Consensus 670 --DvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~ 700 (710)
|+|- +....++.+|.+.|+-.-.|....+
T Consensus 123 ipDLp~--ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 123 IPDLPP--EEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred ECCCCH--HHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 7774 7888999999998876665554433
No 26
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=39.81 E-value=98 Score=25.86 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHhccC-CchHHHHHHHHHHHHcCCCCHHHHH
Q 005167 319 HHEVVKRALVLAMEIR-TAEPLILKLLKEAAEEGLISSSQMA 359 (710)
Q Consensus 319 hhelV~~ai~~alE~~-~~~~~i~~LL~~L~~~~~is~~Q~~ 359 (710)
.+++|..|+..++++. ....-+-..|+.-.++|+-|.+|..
T Consensus 31 ~~evI~~ai~~a~~~~~~~~~Yi~~Il~~W~~~gi~T~e~~~ 72 (73)
T TIGR01446 31 SPELIKEALKEAVSNNKANYKYIDAILNNWKNNGIKTVEDVE 72 (73)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHh
Confidence 3799999999998754 4567899999999999999999864
No 27
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=39.74 E-value=60 Score=27.06 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHhCCCcChHHHHH
Q 005167 282 TVEEVKKKIADLLREYVE--SGDAFEACRCIRELGVSFFHHEVVK 324 (710)
Q Consensus 282 ~~eelkkki~~lL~EYl~--s~D~~EA~rcl~EL~~P~fhhelV~ 324 (710)
|-+++++.|..++.|--. -.|++|-.+|.-.||.|.+|.-+|.
T Consensus 4 P~~DFr~SM~EMI~~~~i~~~~~LeeLL~cYL~LN~~~~H~~Iv~ 48 (59)
T PF04844_consen 4 PYEDFRESMVEMIEENGIRDWDDLEELLACYLSLNSPEHHKFIVE 48 (59)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCChhhhhHHHH
Confidence 567899999999988743 3688999999999999986654443
No 28
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.23 E-value=8.1e+02 Score=30.01 Aligned_cols=210 Identities=18% Similarity=0.164 Sum_probs=129.3
Q ss_pred HHHHHhcCCHH------HHHHHHHHhCCCcChHHHHHHHHHHHhccC-CchHHHHHHHHHHHHcCCCCH-------HHHH
Q 005167 294 LREYVESGDAF------EACRCIRELGVSFFHHEVVKRALVLAMEIR-TAEPLILKLLKEAAEEGLISS-------SQMA 359 (710)
Q Consensus 294 L~EYl~s~D~~------EA~rcl~EL~~P~fhhelV~~ai~~alE~~-~~~~~i~~LL~~L~~~~~is~-------~Q~~ 359 (710)
|--|++.+|.. ||.--+.| .-.+|...+.+|+.+.=+.. ..+...++|+--+.+....+. .-.-
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D 280 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD 280 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH
Confidence 77899999987 44444444 34567777777777665543 345566777776666653332 2345
Q ss_pred HHHHHHhhcccccccccc-ccHHHHHHHHHHHHHcCCCChhhhhhhc----------------------cCCCccccchh
Q 005167 360 KGFARLEESLDDLALDIP-SARNLFQSIVPVAISEGWLDASFMKSLG----------------------EDGRVQQEDEK 416 (710)
Q Consensus 360 ~Gf~rv~e~ldDi~LDvP-~A~~~l~~~v~~~~~~g~l~~~~~~~~~----------------------~~~~~~~~~~s 416 (710)
.+|..|-+.+.|++++|- .|.+.|+.|-. +++.+|-..+-+.+. +.|++|..+-.
T Consensus 281 ~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~--vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advp 358 (823)
T KOG2259|consen 281 AAFSSVCRAVRDRSLSVRVEAAKALGEFEQ--VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVP 358 (823)
T ss_pred HHHHHHHHHHhcCceeeeehHHHHhchHHH--hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCc
Confidence 789999999999999975 45555554422 122222222222222 34666766555
Q ss_pred HHHHHHHHHHHHH----HhhcCCCHHH-------HHHHHHhcCC--CCChHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 005167 417 VKRYKEEVVTIIH----EYFLSDDIPE-------LIRSLEDLGA--PEFNPIFLKKVITLAMDRKNREKEMASVLLSALH 483 (710)
Q Consensus 417 ~ee~kk~~~~il~----EYf~~~D~~E-------v~~~l~el~~--p~~~~~~v~~~i~~alDrk~~eREl~s~LLs~L~ 483 (710)
.|+......+||. =-|-||=.+| ++.++.-|.. |.|--.-+-.++.+==|.-..-|..+-.-|..+.
T Consensus 359 see~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is 438 (823)
T KOG2259|consen 359 SEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMIS 438 (823)
T ss_pred hhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 6666666666653 2344443333 4555655554 7787777777777766666677777777777776
Q ss_pred hc-cCChHHHHHHHHHHHhhhhhhhhchh
Q 005167 484 IE-IFSTEDIVNGFVMLLESAEDTALDIL 511 (710)
Q Consensus 484 ~~-~ls~~~i~~Gf~~lL~~l~Dl~lDiP 511 (710)
.. .|..+++ ..++++++|...|+-
T Consensus 439 ~~l~i~eeql----~~il~~L~D~s~dvR 463 (823)
T KOG2259|consen 439 VHLAIREEQL----RQILESLEDRSVDVR 463 (823)
T ss_pred HHheecHHHH----HHHHHHHHhcCHHHH
Confidence 66 5666665 457777888775553
No 29
>PF08876 DUF1836: Domain of unknown function (DUF1836); InterPro: IPR014975 This group of proteins are functionally uncharacterised.
Probab=38.17 E-value=22 Score=32.85 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhccC---chHHHHHHHHHHHcCCCCHHHHHhHHHHHhhccchhhccccchHHHH
Q 005167 618 EVVKKALVMAMEKK---NDRMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKF 678 (710)
Q Consensus 618 e~Vk~al~~alE~~---~~~~~~LL~~l~~~~~it~~q~~~Gf~rv~~~ldDi~lDvP~A~~~l 678 (710)
--||+.++..-+++ .+++..|+.=..-+.++|-+++.+||....+...|-..+...||..|
T Consensus 42 NYvK~~li~~P~kKkYsr~qla~li~I~~lK~vlsi~dI~~ll~~~~~~~~~~~~~~~~~Y~~f 105 (105)
T PF08876_consen 42 NYVKRGLIPPPIKKKYSREQLAYLIVISILKQVLSIDDIKKLLDLQFNNYEDDEISLEDAYNYF 105 (105)
T ss_pred HHHhcccCCCcccCccCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccccCCCHHHHHhcC
Confidence 45777776666655 46888888888889999999999999999999877777888887654
No 30
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=36.84 E-value=6.4e+02 Score=33.22 Aligned_cols=171 Identities=15% Similarity=0.187 Sum_probs=109.4
Q ss_pred cCChHHHHHHHHHHHhh------------hhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHHHHHH
Q 005167 486 IFSTEDIVNGFVMLLES------------AEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVR 553 (710)
Q Consensus 486 ~ls~~~i~~Gf~~lL~~------------l~Dl~lDiP~a~~~La~fiARaV~Dd~l~p~~l~~~~~~~~~~~~g~~~l~ 553 (710)
..+.++|..++..+|+. ...-..++|.--++.-..+-.++...++.+..+..+....-++..-..+..
T Consensus 919 ~~~~~~I~~i~m~iL~~ic~~~qk~~~~~vs~a~s~~~~~~e~n~~~~~~L~~~~l~~~~~vd~~l~~amDs~~n~~vi~ 998 (1591)
T KOG1831|consen 919 DFSTEKIFKIIMEILDNICRFIQKAGVRKVSEAISSSRSSLEYNIEKAEHLILSLLLDSGHVDKHLAKAMDSGGNQEVIA 998 (1591)
T ss_pred hhcchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhchHHHHhhHHHHHHHHHHhccChhhHHHHHHHHhccCCChHHHH
Confidence 67889999999999988 455566788888888888889999999999999876554334444456888
Q ss_pred HHHHHHhcccccccccc-cccCCCCcchHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCcH---------------
Q 005167 554 VARSLIAARHAGERLLR-CWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNH--------------- 617 (710)
Q Consensus 554 ~A~~lL~~~h~~~rl~~-~Wg~~~g~~~~~lk~ki~~ll~EY~~s~D~~EA~rCv~eL~~p~fhh--------------- 617 (710)
.+..+|...-+++++.. .|..---.+.|++-+ |.....-| .|..|=|.-.-+..+-++-|
T Consensus 999 f~iell~~~~~~dnvi~~~~~~~~~~t~E~~~r-i~q~v~s~---~~~~g~~~~~~~~~v~~~~k~~s~~~~m~~~~~~~ 1074 (1591)
T KOG1831|consen 999 FLIELLRIAYGGDNVIADEWKNLFKETKEELFR-ILQSVESS---EDKSGECASLCDYIVEHAIKSGSSADFMFRRMDDK 1074 (1591)
T ss_pred HHHHHHHHhccCcchhhhhhhhhhhhHHHHHHH-HHHHHhcc---cccchhhhhHHHHHHHhccCCCCchhHHHHhcCcc
Confidence 88888887777777665 343322223455554 55554444 33333222222222322221
Q ss_pred -------HHHHHHHHHHhccC---chHHHHHHHHHHHcCCCCHHHHHhHHHHH
Q 005167 618 -------EVVKKALVMAMEKK---NDRMLDLLQECFSEGLITTNQMTKGFTRI 660 (710)
Q Consensus 618 -------e~Vk~al~~alE~~---~~~~~~LL~~l~~~~~it~~q~~~Gf~rv 660 (710)
|+|-..-+.-+-.. .+.....++.+...|+++.+|...-|-|-
T Consensus 1075 ~~lt~K~~~v~~~Wv~L~~~~~~~~~s~~~fi~ql~~~GVls~dd~ltqFfr~ 1127 (1591)
T KOG1831|consen 1075 QKLTEKTEIVFLEWVILLNDSRKNDESLAAFIQQLNEIGVLSTDDLLTQFFRA 1127 (1591)
T ss_pred hhhhhHHHHHHHHHHHHHhccccchHHHHHHHHHHHHcCcccchHHHHHHHHh
Confidence 33332222222222 23468889999999999999998888764
No 31
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=36.53 E-value=2.8e+02 Score=26.26 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHcCCCChhhhhhhccCCCc--cccchhHH
Q 005167 341 LKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRV--QQEDEKVK 418 (710)
Q Consensus 341 ~~LL~~L~~~~~is~~Q~~~Gf~rv~e~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~--~~~~~s~e 418 (710)
..+++.|+..|-+|..++...+..- -+-++.-+..++.+...-|+|... ..||. .-...+.+
T Consensus 7 ~~VM~vlW~~~~~t~~eI~~~l~~~----------~~~~~tTv~T~L~rL~~KG~v~~~------k~gr~~~Y~p~vs~e 70 (130)
T TIGR02698 7 WEVMRVVWTLGETTSRDIIRILAEK----------KDWSDSTIKTLLGRLVDKGCLTTE------KEGRKFIYTALVSED 70 (130)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhc----------cCCcHHHHHHHHHHHHHCCceeee------cCCCcEEEEecCCHH
Confidence 3567778889999998887776431 346788889999999999999644 22443 44456778
Q ss_pred HHHHHH-HHHHHHhhcCCCHHHHHHHH
Q 005167 419 RYKEEV-VTIIHEYFLSDDIPELIRSL 444 (710)
Q Consensus 419 e~kk~~-~~il~EYf~~~D~~Ev~~~l 444 (710)
+|.+.. ..++.. |..|+...++..|
T Consensus 71 e~~~~~~~~~~~~-~f~gs~~~ll~~l 96 (130)
T TIGR02698 71 EAVENAAQELFSR-ICSRKVGAVIADL 96 (130)
T ss_pred HHHHHHHHHHHHH-HHCCCHHHHHHHH
Confidence 885444 444444 4445555544444
No 32
>PF05044 HPD: Homeo-prospero domain; InterPro: IPR007738 The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system []. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm []. This family contains an atypical homeobox domain.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2LMD_A 1XPX_A 1MIJ_A.
Probab=36.03 E-value=86 Score=30.68 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHcCCCChhhhhhhccCC---------CccccchhHHHHHHH
Q 005167 353 ISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDG---------RVQQEDEKVKRYKEE 423 (710)
Q Consensus 353 is~~Q~~~Gf~rv~e~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~---------~~~~~~~s~ee~kk~ 423 (710)
.+++|+.+.|...-|. -|-+++++...|+.+|+-+.+-+.=...-. -|.+.-...+.|...
T Consensus 38 ~~TsQLiKWFSNFREF----------yYiQMEK~ARqa~~eGv~~~~~l~V~rdsELfr~LN~HYNk~N~~evP~~Fl~v 107 (158)
T PF05044_consen 38 CNTSQLIKWFSNFREF----------YYIQMEKFARQAVSEGVKNADDLRVTRDSELFRVLNMHYNKNNDFEVPDRFLEV 107 (158)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHT-S-GGGSSSS-TTCHHHHHHHHHHTT-STT--HHHHHH
T ss_pred hhHHHHHHHhccchhH----------HHHHHHHHHHHHHHccCCcHHHeeeccchHHHHHHHhhcccCCCccCchhHHHH
Confidence 3578999999999885 589999999999999998755332111100 012344556899999
Q ss_pred HHHHHHHhhc
Q 005167 424 VVTIIHEYFL 433 (710)
Q Consensus 424 ~~~il~EYf~ 433 (710)
++..|+|+|.
T Consensus 108 ~~~tLrEFf~ 117 (158)
T PF05044_consen 108 VQITLREFFN 117 (158)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999995
No 33
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=34.42 E-value=1.6e+02 Score=25.22 Aligned_cols=48 Identities=21% Similarity=0.463 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHHHhc--C-CCHHHHHHHHHhhCCCCChHHHHHHHHH
Q 005167 117 DPLDDYKKAVASIIEEYFS--T-GDVEVAASDLRELGSSEYHPYFIKRLVS 164 (710)
Q Consensus 117 ~s~ee~~k~v~~ii~EYf~--~-~D~~Ea~~~lkEL~~p~~~~~~v~~~V~ 164 (710)
-+.++|++.+..+|.+-=- . .+++|-..|.=.||.+.+|..++.-+..
T Consensus 9 DPy~DFr~SM~EMI~~~~i~~~w~~LeeLL~cYL~LN~~~~H~~Iv~AF~d 59 (66)
T TIGR01568 9 DPYEDFRRSMEEMIEERELEADWKELEELLACYLDLNPKKSHRFIVRAFVD 59 (66)
T ss_pred ChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCchhhhHHHHHHHH
Confidence 4579999999999988732 2 4689999999999999999888876654
No 34
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=34.37 E-value=7.6e+02 Score=28.81 Aligned_cols=239 Identities=11% Similarity=0.106 Sum_probs=153.1
Q ss_pred ChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhhhh-hhhcchhhHHHHHHHHHHHHHh-
Q 005167 154 YHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA---DVISPDQIRDGFVILLESAD-DLAVDILDAVDILALFVARAVV- 228 (710)
Q Consensus 154 ~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~---~vls~~~i~~Gf~~lL~~l~-DL~lDiP~a~~~la~fiARaV~- 228 (710)
.-+.-+..+|...+.........++++++-|.. +.+...++..-++.++...+ .+-...|.-.++-+..+..-|.
T Consensus 153 ~g~it~~~Fi~~~~~~~~l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~tvi~rIFy 232 (493)
T KOG2562|consen 153 TGHITRDKFINYWMRGLMLTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAETVIQRIFY 232 (493)
T ss_pred CCceeHHHHHHHHHhhhhHHHHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHHHhhhhhe
Confidence 334456677777788888888999999999974 78999999999999999999 5556678877776666555443
Q ss_pred ------cCCCChhhHhhhhhcCC-CCchHHHHHHHHHhhhccCCCchhHHhhhhc-CCC---CCCHHHHHHHHHHHHHHH
Q 005167 229 ------DDILPPAFLTRAKKTLP-AASKGFQVIQTAEKSYLSAPHHAELVERRWG-GST---HITVEEVKKKIADLLREY 297 (710)
Q Consensus 229 ------D~ilp~~~l~~~~~~~~-~~~~g~~~l~~a~~~lLs~~~~~~~l~~~Wg-g~~---~~~~eelkkki~~lL~EY 297 (710)
-|+++...+..-.-... ....-.+-+..+ ..+.|..|......+.|- +++ .+..+++++--+..+-+-
T Consensus 233 ~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~-~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~tlt~~ 311 (493)
T KOG2562|consen 233 YLNRSRTGRITIQELLRSNLLDALLELDEEEDINQV-TRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHTLTER 311 (493)
T ss_pred eeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhh-hhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccchhhH
Confidence 46666655543221100 000000111222 135566677667788996 332 456788888777666655
Q ss_pred HhcCCHHHHHH---HHHHhCCCcChHHHHHHHHHHHhccCCchHHHHHHHHH--HHHcCCCCHHHHHHHHHHHhhccccc
Q 005167 298 VESGDAFEACR---CIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKE--AAEEGLISSSQMAKGFARLEESLDDL 372 (710)
Q Consensus 298 l~s~D~~EA~r---cl~EL~~P~fhhelV~~ai~~alE~~~~~~~i~~LL~~--L~~~~~is~~Q~~~Gf~rv~e~ldDi 372 (710)
+.-+=+. +++ |++.=+- -=+..||+ .++|+|.+.+...+=..++- |-..|++|...|.-=|+.+...|+++
T Consensus 312 ivdRIFs-~v~r~~~~~~eGr-mdykdFv~--FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~ 387 (493)
T KOG2562|consen 312 IVDRIFS-QVPRGFTVKVEGR-MDYKDFVD--FILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECM 387 (493)
T ss_pred HHHHHHh-hccccceeeecCc-ccHHHHHH--HHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhc
Confidence 5444333 332 1111111 12356776 67789876544444444443 45899999999999999999999999
Q ss_pred ccc-ccccHHHHHHHHHHHH--HcCCCCh
Q 005167 373 ALD-IPSARNLFQSIVPVAI--SEGWLDA 398 (710)
Q Consensus 373 ~LD-vP~A~~~l~~~v~~~~--~~g~l~~ 398 (710)
..+ +|. ...++++.+... ..+.++.
T Consensus 388 ~~e~l~f-ed~l~qi~DMvkP~~~~kItL 415 (493)
T KOG2562|consen 388 GQEALPF-EDALCQIRDMVKPEDENKITL 415 (493)
T ss_pred CCCcccH-HHHHHHHHHHhCccCCCceeH
Confidence 987 444 777777776554 2455553
No 35
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=32.62 E-value=3.2e+02 Score=26.46 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhcCCCC---ChHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhc-c-CChHHHHHHH
Q 005167 422 EEVVTIIHEYFLSDDIPELIRSLEDLGAPE---FNPIFLKKVITLAMDRKNREKEMASVLLSALHIE-I-FSTEDIVNGF 496 (710)
Q Consensus 422 k~~~~il~EYf~~~D~~Ev~~~l~el~~p~---~~~~~v~~~i~~alDrk~~eREl~s~LLs~L~~~-~-ls~~~i~~Gf 496 (710)
|+++.+|...- .++.+.++..+..+.... ....+++.+++.+.... .-..+.++|...|+.. . --...+.+.+
T Consensus 2 r~v~~~lnklt-~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~-~~~~~~a~l~~~l~~~~~~~f~~~ll~~~ 79 (209)
T PF02854_consen 2 RKVRGILNKLT-PSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEP-NFSPLYARLCAALNSRFPSEFRSLLLNRC 79 (209)
T ss_dssp HHHHHHHHHCS-STTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSG-GGHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred chHHHHHHHCC-HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCc-hHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 45556665554 667777777777766544 66667777777766665 5566777777777754 2 1123334444
Q ss_pred HHHHhh------hhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhh
Q 005167 497 VMLLES------AEDTALDILDASNELALFLARAVIDDVLAPLNLEEIS 539 (710)
Q Consensus 497 ~~lL~~------l~Dl~lDiP~a~~~La~fiARaV~Dd~l~p~~l~~~~ 539 (710)
..-+.. .++..--.-.-..-+..|||-...-++++...+-+..
T Consensus 80 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l 128 (209)
T PF02854_consen 80 QEEFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDIL 128 (209)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHH
Confidence 444443 3333333334455677889999998998887776643
No 36
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=32.41 E-value=1.1e+02 Score=35.80 Aligned_cols=104 Identities=16% Similarity=0.282 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHhhCCCCC--cH---------------HHHHHHHHHHhccCchHH------HHHHHHHHHcCCCCHHHHH
Q 005167 598 GVVSEACQCIRDLGMPFF--NH---------------EVVKKALVMAMEKKNDRM------LDLLQECFSEGLITTNQMT 654 (710)
Q Consensus 598 ~D~~EA~rCv~eL~~p~f--hh---------------e~Vk~al~~alE~~~~~~------~~LL~~l~~~~~it~~q~~ 654 (710)
-=++||.++++|=++|.- +- .=|++|....+.....++ -++|..|....-=++..+.
T Consensus 263 ~lYeeAl~lveeg~V~cR~LRTEl~~C~sD~dfLAKLHCvRqAf~~~l~d~~~r~~~~~~Gr~~l~~ll~~a~~~p~~f~ 342 (514)
T PF10265_consen 263 PLYEEALKLVEEGKVPCRTLRTELLGCESDQDFLAKLHCVRQAFQVLLQDESNRVWLADVGRQILSDLLVKADKDPKDFL 342 (514)
T ss_pred hHHHHHHHHHHcCCCccccchhHHhccCchHHHHHHHHHHHHHHHHHhcCchhhhhHHHhhHHHHHHHHHHcCCCcHHHH
Confidence 346788888888877765 11 257889888888775432 3566777777777899999
Q ss_pred hHHHHHhhccc-----------------------hhhccc--cchHHHHHH---HHHHHHHcCCCCCccccCccC
Q 005167 655 KGFTRIKDGLD-----------------------DLALDI--PNAKEKFTF---YVEYARKKGWLLPAFGSCVAD 701 (710)
Q Consensus 655 ~Gf~rv~~~ld-----------------------Di~lDv--P~A~~~l~~---~v~~~~~~g~l~~~~~~~~~~ 701 (710)
.+|.++++.+. |++||. =+|.+-|+. =|...++..||+.+|+.+|-.
T Consensus 343 ~~ye~m~~f~~~~~~~~~~~~EL~~rgV~~~~fyDvvlDfillDaFedL~~PPssv~aV~~Nrwls~sfKetal~ 417 (514)
T PF10265_consen 343 EAYEEMMEFLQDPENWDTMEEELESRGVKCMNFYDVVLDFILLDAFEDLENPPSSVLAVVQNRWLSDSFKETALA 417 (514)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHhhhcCCcHHHHHHHHcchhhhhhhhhccC
Confidence 99999999887 555662 344444432 366778889999999986643
No 37
>PF07149 Pes-10: Pes-10; InterPro: IPR009819 This family consists of several Caenorhabditis elegans pes-10 and related proteins. Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=31.91 E-value=3.3e+02 Score=30.67 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCCHHHH---HHHHHhhCCCC--ChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 005167 126 VASIIEEYFSTGDVEVA---ASDLRELGSSE--YHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA--DVISPDQIRDGF 198 (710)
Q Consensus 126 v~~ii~EYf~~~D~~Ea---~~~lkEL~~p~--~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~--~vls~~~i~~Gf 198 (710)
+.-.+.++..+||..-. +..+.+...|- |.-+=+..+|. +...+.+-+..|+..+-. ..-=..+-.++|
T Consensus 212 ~M~~La~~iksgn~~~I~~AI~~~~~~~~pL~lyrKYeI~~LI~----~~~~~~~~A~~L~~~I~~~ee~~m~~e~~E~F 287 (370)
T PF07149_consen 212 CMRNLAQSIKSGNEEKISAAIKFFGEFEFPLELYRKYEIQRLIE----KHGIHNEDAMDLIDKIEELEEEEMADEKLEAF 287 (370)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH----HhccchhHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44457788899997664 44455555554 44444555554 345556778888888763 443445567899
Q ss_pred HHHHhhhhhhhcchhhHHHHHHHHH
Q 005167 199 VILLESADDLAVDILDAVDILALFV 223 (710)
Q Consensus 199 ~~lL~~l~DL~lDiP~a~~~la~fi 223 (710)
++++..........+.+.+++..|+
T Consensus 288 ~~fl~~~~~~~~~~d~vm~vl~~yl 312 (370)
T PF07149_consen 288 KEFLKETMEENEVSDSVMEVLMGYL 312 (370)
T ss_pred HHHHHhhcccCCCcHHHHHHHHHHh
Confidence 9999988888889999999999988
No 38
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=31.41 E-value=6.5e+02 Score=32.26 Aligned_cols=160 Identities=19% Similarity=0.380 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHH---HHHHHHhCCCcChHHHHHHHHHHHhccCC-------chHHHHHHHHHHHHcCC-
Q 005167 284 EEVKKKIADLLREYVESGDAFEA---CRCIRELGVSFFHHEVVKRALVLAMEIRT-------AEPLILKLLKEAAEEGL- 352 (710)
Q Consensus 284 eelkkki~~lL~EYl~s~D~~EA---~rcl~EL~~P~fhhelV~~ai~~alE~~~-------~~~~i~~LL~~L~~~~~- 352 (710)
+.+..++..+...|+...+..|+ .+.|..+--|. .|-+++++.++++... .++.+++++-....+..
T Consensus 694 ~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~--~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~ 771 (1133)
T KOG1943|consen 694 DAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCS--EERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAW 771 (1133)
T ss_pred HHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCch--HHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCccccc
Confidence 55777888888888888888887 56666665554 3556777777776431 12333333222222210
Q ss_pred -CCHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHcCCCChhhhhhhccCCCccccchhHHHHHHHHHHHHHHh
Q 005167 353 -ISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEY 431 (710)
Q Consensus 353 -is~~Q~~~Gf~rv~e~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~~~~~~s~ee~kk~~~~il~EY 431 (710)
.+-.|-.++..++..... ......+.++|.+..-..+.+|
T Consensus 772 a~aR~~~V~al~~v~~~~~---------------------------------------~~~~~~~~~k~~e~LL~~lddY 812 (1133)
T KOG1943|consen 772 AEARQQNVKALAHVCKTVT---------------------------------------SLLFSESIEKFRETLLNALDDY 812 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------------------------------HhhccccHHHHHHHHHHHHhhc
Confidence 111112222222221111 0123456788999999999999
Q ss_pred hcC--CCH-----HHHHHHHHhc----CCCC-ChHH----HHHHHHHHHhcCChhHHHHHHHHHHHHHh
Q 005167 432 FLS--DDI-----PELIRSLEDL----GAPE-FNPI----FLKKVITLAMDRKNREKEMASVLLSALHI 484 (710)
Q Consensus 432 f~~--~D~-----~Ev~~~l~el----~~p~-~~~~----~v~~~i~~alDrk~~eREl~s~LLs~L~~ 484 (710)
... ||+ +++..++..+ ..|+ +-.. .+..++..+.||-++=||+++..+..+.-
T Consensus 813 ttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~ 881 (1133)
T KOG1943|consen 813 TTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVV 881 (1133)
T ss_pred ccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceee
Confidence 976 677 4555555553 3344 3333 44456668999999999999999887753
No 39
>PF12854 PPR_1: PPR repeat
Probab=31.01 E-value=69 Score=23.02 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhh
Q 005167 587 IMKLLEEYESGGVVSEACQCIRDL 610 (710)
Q Consensus 587 i~~ll~EY~~s~D~~EA~rCv~eL 610 (710)
-+.+|.-|...|+++||.+.++++
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367899999999999999999875
No 40
>PLN02591 tryptophan synthase
Probab=30.71 E-value=1.5e+02 Score=31.48 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=66.0
Q ss_pred HHhCCCc----ChHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCC------HHH-HHHHHHHHhhccccccc-----
Q 005167 311 RELGVSF----FHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLIS------SSQ-MAKGFARLEESLDDLAL----- 374 (710)
Q Consensus 311 ~EL~~P~----fhhelV~~ai~~alE~~~~~~~i~~LL~~L~~~~~is------~~Q-~~~Gf~rv~e~ldDi~L----- 374 (710)
=||++|| .--.++.+|-.-||++..+.+.++++++.+.+.--+. -+. +..|++|+++.+.+.-+
T Consensus 33 iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gvii 112 (250)
T PLN02591 33 IELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVV 112 (250)
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEe
Confidence 3567776 3447899999999988877788999999987542222 122 45599999999988877
Q ss_pred -cccccHHHHHHHHHHHHHcCCCChhhhh
Q 005167 375 -DIPSARNLFQSIVPVAISEGWLDASFMK 402 (710)
Q Consensus 375 -DvP~A~~~l~~~v~~~~~~g~l~~~~~~ 402 (710)
|+|. +-.+.+...|...|+=.--++.
T Consensus 113 pDLP~--ee~~~~~~~~~~~gl~~I~lv~ 139 (250)
T PLN02591 113 PDLPL--EETEALRAEAAKNGIELVLLTT 139 (250)
T ss_pred CCCCH--HHHHHHHHHHHHcCCeEEEEeC
Confidence 8884 8888889888888776544443
No 41
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=30.34 E-value=1.5e+02 Score=25.27 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHhCCCcChHHHHHHHH
Q 005167 281 ITVEEVKKKIADLLREYVES---GDAFEACRCIRELGVSFFHHEVVKRAL 327 (710)
Q Consensus 281 ~~~eelkkki~~lL~EYl~s---~D~~EA~rcl~EL~~P~fhhelV~~ai 327 (710)
-|-.++++.|..++.|-=.- .|++|-..|.-.||.|..|+ ++-+|.
T Consensus 9 DPy~DFr~SM~EMI~~~~i~~~w~~LeeLL~cYL~LN~~~~H~-~Iv~AF 57 (66)
T TIGR01568 9 DPYEDFRRSMEEMIEERELEADWKELEELLACYLDLNPKKSHR-FIVRAF 57 (66)
T ss_pred ChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCchhhh-HHHHHH
Confidence 35688999999999987432 46899999999999887555 444443
No 42
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=29.84 E-value=1e+02 Score=22.13 Aligned_cols=26 Identities=38% Similarity=0.408 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Q 005167 341 LKLLKEAAEEGLISSSQMAKGFARLE 366 (710)
Q Consensus 341 ~~LL~~L~~~~~is~~Q~~~Gf~rv~ 366 (710)
+.-|+.|..+|+||.+.+.+-=.+++
T Consensus 5 L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 56688999999999999998766664
No 43
>PF08876 DUF1836: Domain of unknown function (DUF1836); InterPro: IPR014975 This group of proteins are functionally uncharacterised.
Probab=29.70 E-value=51 Score=30.51 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhccC-CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccccHHH
Q 005167 321 EVVKRALVLAMEIR-TAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNL 382 (710)
Q Consensus 321 elV~~ai~~alE~~-~~~~~i~~LL~~L~~~~~is~~Q~~~Gf~rv~e~ldDi~LDvP~A~~~ 382 (710)
--||+.+...=+++ =.+++++.|+--..-+.++|-+++.++|....+...|-..+...||..
T Consensus 42 NYvK~~li~~P~kKkYsr~qla~li~I~~lK~vlsi~dI~~ll~~~~~~~~~~~~~~~~~Y~~ 104 (105)
T PF08876_consen 42 NYVKRGLIPPPIKKKYSREQLAYLIVISILKQVLSIDDIKKLLDLQFNNYEDDEISLEDAYNY 104 (105)
T ss_pred HHHhcccCCCcccCccCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccccCCCHHHHHhc
Confidence 34666665554444 357888888888888889999999999999999988777777777765
No 44
>PF12854 PPR_1: PPR repeat
Probab=29.38 E-value=77 Score=22.75 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 005167 290 IADLLREYVESGDAFEACRCIREL 313 (710)
Q Consensus 290 i~~lL~EYl~s~D~~EA~rcl~EL 313 (710)
-+.+|.-|...|+++||.+.+++.
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC
Confidence 467899999999999999999875
No 45
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=28.33 E-value=1.5e+02 Score=24.70 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=38.4
Q ss_pred CHHHHHHHHHhhCCCCCcHHHHHHHHHHHhccCchH---HHHHHHHHHHcCCCCHHHHH
Q 005167 599 VVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDR---MLDLLQECFSEGLITTNQMT 654 (710)
Q Consensus 599 D~~EA~rCv~eL~~p~fhhe~Vk~al~~alE~~~~~---~~~LL~~l~~~~~it~~q~~ 654 (710)
+.+--..-+.+++. .+++|..|+..++++.... +-..|+.-.++|+-|.+|..
T Consensus 17 e~~~i~~~~~~~~~---~~evI~~ai~~a~~~~~~~~~Yi~~Il~~W~~~gi~T~e~~~ 72 (73)
T TIGR01446 17 EMEDLKYWLDEFGN---SPELIKEALKEAVSNNKANYKYIDAILNNWKNNGIKTVEDVE 72 (73)
T ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHh
Confidence 33333444556654 4899999999999865332 57888999999999999864
No 46
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=28.23 E-value=1.3e+02 Score=33.57 Aligned_cols=13 Identities=38% Similarity=0.381 Sum_probs=8.3
Q ss_pred CCCCCCCCCcccc
Q 005167 67 KLVRVKKDGAGGK 79 (710)
Q Consensus 67 ~~~~~kk~G~ggk 79 (710)
|.|.|+.+|+||-
T Consensus 425 ktgspg~~g~g~~ 437 (473)
T KOG3905|consen 425 KTGSPGGPGAGGG 437 (473)
T ss_pred ccCCCCCCCCCCc
Confidence 4666766666654
No 47
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=27.42 E-value=3.9e+02 Score=25.91 Aligned_cols=28 Identities=11% Similarity=0.004 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHhcCCCChhhHhhhh
Q 005167 214 DAVDILALFVARAVVDDILPPAFLTRAK 241 (710)
Q Consensus 214 ~a~~~la~fiARaV~D~ilp~~~l~~~~ 241 (710)
..+.-+..|++....-++++...+.+..
T Consensus 94 ~~~~~~i~fl~eL~~~~~i~~~~i~~~l 121 (200)
T smart00543 94 QRRLGLVRFLGELYNFQVLTSKIILELL 121 (200)
T ss_pred hhHHhHHHHHHHHHHcccCcHHHHHHHH
Confidence 5567888999999999999987766543
No 48
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=27.22 E-value=1.3e+03 Score=28.62 Aligned_cols=183 Identities=21% Similarity=0.259 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHHh--cCCCHHHHHHHH--------------------------
Q 005167 95 DRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYF--STGDVEVAASDL-------------------------- 146 (710)
Q Consensus 95 D~~DPNyds~~~~~~~~~~~~~~s~ee~~k~v~~ii~EYf--~~~D~~Ea~~~l-------------------------- 146 (710)
|..|=||+. -.....+-+++.|++++.|.++= ++.+++.=...+
T Consensus 8 d~edE~y~~--------rr~r~~~~e~l~krl~~~i~~vg~~s~ss~e~~l~~l~~~l~~~~~~~~~~iL~~L~~ca~~l 79 (759)
T KOG1104|consen 8 DDEDENYDD--------RRRRISPAETLEKRLESLIREVGEPSGSSVEDNLENLVAVLEADLENFKSKILDILNTCAVYL 79 (759)
T ss_pred Ccccccccc--------ccccCCcHHHHHHHHHHHHHhhcCCCCCcHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHc
Q ss_pred ----------------HhhCCCC-ChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhhhhhh
Q 005167 147 ----------------RELGSSE-YHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DVISPDQIRDGFVILLESADDL 208 (710)
Q Consensus 147 ----------------kEL~~p~-~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~-~vls~~~i~~Gf~~lL~~l~DL 208 (710)
+..+... +..+|+...=+.-=-++=-+-...-+.|++|+. +++++.-+..=|+.+++.....
T Consensus 80 P~K~~~yaTLvgllN~kn~~fg~~~v~~~~~~~q~sl~~~~~n~ar~llrfL~dL~~~~vl~~~sli~l~esl~~~~~e~ 159 (759)
T KOG1104|consen 80 PEKITAYATLVGLLNLKNFNFGGEFVEYMIEELQESLKSGNWNEARYLLRFLSDLSNCHVLQADSLINLFESLLDAAIEE 159 (759)
T ss_pred ccchhHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHHhh
Q ss_pred hcchhhHHHHHHHHHHHHHhcCCCChhhHhhhhhcCCCCchHHHHHHHHHhhhccCCC-chhHHhhhhcCCCCCCHHH--
Q 005167 209 AVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPH-HAELVERRWGGSTHITVEE-- 285 (710)
Q Consensus 209 ~lDiP~a~~~la~fiARaV~D~ilp~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~-~~~~l~~~Wgg~~~~~~ee-- 285 (710)
. .|+.=+-|..++|.. ++-++.+..... ....-.+.|..-+ .||+.+. ..-.+.|+|-|....+-+|
T Consensus 160 ~-----~Pqvr~D~~v~~vLs---~lPw~g~el~e~-~~~~~e~ll~~ie-~Yl~~R~~shi~lL~vw~~~~~~~qeeyl 229 (759)
T KOG1104|consen 160 N-----VPQVRRDYYVYCVLS---SLPWFGRELNEK-KPTEMEELLVYIE-IYLKKRKKSHINLLNVWSGEPDHPQEEYL 229 (759)
T ss_pred c-----CcchhhhHHHHHHHh---ccchhhhhhccc-chHHHHHHHHHHH-HHHHHhcccccchhhcCCCCCCchHHHHH
Q ss_pred --HHHHHHHHHH
Q 005167 286 --VKKKIADLLR 295 (710)
Q Consensus 286 --lkkki~~lL~ 295 (710)
+=++|+.+.+
T Consensus 230 e~L~~qI~~lr~ 241 (759)
T KOG1104|consen 230 ELLWAQIQKLRQ 241 (759)
T ss_pred HHHHHHHHHHHh
No 49
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=27.12 E-value=89 Score=20.98 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhC
Q 005167 291 ADLLREYVESGDAFEACRCIRELG 314 (710)
Q Consensus 291 ~~lL~EYl~s~D~~EA~rcl~EL~ 314 (710)
+.+|.=|...|+.++|.+.++++.
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 568888999999999999998874
No 50
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=26.53 E-value=83 Score=20.86 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhC
Q 005167 588 MKLLEEYESGGVVSEACQCIRDLG 611 (710)
Q Consensus 588 ~~ll~EY~~s~D~~EA~rCv~eL~ 611 (710)
+.+|.-|...|+.++|.+.++++.
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHh
Confidence 568999999999999999998874
No 51
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=25.49 E-value=1.6e+02 Score=25.91 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-hCCCC
Q 005167 116 SDPLDDYKKAVASIIEEYFSTGDVEVAASDLRE-LGSSE 153 (710)
Q Consensus 116 ~~s~ee~~k~v~~ii~EYf~~~D~~Ea~~~lkE-L~~p~ 153 (710)
.+++.| +..+...|++|+.++++++.+..|.. ||.|.
T Consensus 15 LL~~~E-r~~~~~~L~~Y~~~~~Vd~LV~~L~~vLdtPa 52 (78)
T cd07347 15 LLTDAE-REQVTRALERYHQERNVDDLVRDLYLVLDTPA 52 (78)
T ss_pred HCCHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHcCcHh
Confidence 356777 66788889999999999999999988 45554
No 52
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.46 E-value=2e+02 Score=30.61 Aligned_cols=101 Identities=20% Similarity=0.318 Sum_probs=69.4
Q ss_pred HHHhcC--CHHHHHHHHH----------HhCCCc----ChHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCH----
Q 005167 296 EYVESG--DAFEACRCIR----------ELGVSF----FHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISS---- 355 (710)
Q Consensus 296 EYl~s~--D~~EA~rcl~----------EL~~P~----fhhelV~~ai~~alE~~~~~~~i~~LL~~L~~~~~is~---- 355 (710)
=|+..| |++...++++ ||++|+ .--.++.+|-.-||++....+.++++++.+.+...=++
T Consensus 16 ~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm 95 (258)
T PRK13111 16 PYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLM 95 (258)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 355555 4555555555 446776 44578999999999888667788999999884421112
Q ss_pred ---HHH-HHHHHHHhhccccccc------cccccHHHHHHHHHHHHHcCCCCh
Q 005167 356 ---SQM-AKGFARLEESLDDLAL------DIPSARNLFQSIVPVAISEGWLDA 398 (710)
Q Consensus 356 ---~Q~-~~Gf~rv~e~ldDi~L------DvP~A~~~l~~~v~~~~~~g~l~~ 398 (710)
+.+ ..|++++++.+.+.-+ |+|. +-...++..|..-|+-.-
T Consensus 96 ~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~--ee~~~~~~~~~~~gl~~I 146 (258)
T PRK13111 96 TYYNPIFQYGVERFAADAAEAGVDGLIIPDLPP--EEAEELRAAAKKHGLDLI 146 (258)
T ss_pred ecccHHhhcCHHHHHHHHHHcCCcEEEECCCCH--HHHHHHHHHHHHcCCcEE
Confidence 443 4499999988888777 7774 677788888877775543
No 53
>PF12295 Symplekin_C: Symplekin tight junction protein C terminal; InterPro: IPR022075 This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens.
Probab=24.40 E-value=3.1e+02 Score=27.68 Aligned_cols=84 Identities=25% Similarity=0.327 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCCC---HHHHHHHHHhhCCCCChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 005167 124 KAVASIIEEYFSTGD---VEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DVISPDQIRDGFV 199 (710)
Q Consensus 124 k~v~~ii~EYf~~~D---~~Ea~~~lkEL~~p~~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~-~vls~~~i~~Gf~ 199 (710)
|++...++--|+..+ .+-.+..++.+--..-.|.+..+-+-.|+..-.+=|..++.+|+.|.. ++.....+-+||-
T Consensus 74 k~~~~a~~~Cf~~~~vf~~evla~~l~ql~~~~~lP~LfmRTviq~~~~~p~L~~FV~~iL~rLi~kqvW~~~~lW~Gfi 153 (183)
T PF12295_consen 74 KKIIEALDLCFSMRDVFTQEVLASALQQLVEQPPLPLLFMRTVIQALQKYPSLRSFVSNILSRLIQKQVWKNKKLWEGFI 153 (183)
T ss_pred HHHHHHHHHHHcccccCCHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcChhHHHHHH
Confidence 344666777777766 233344444444335566767777777888899999999999999997 8999999999999
Q ss_pred HHHhhhhh
Q 005167 200 ILLESADD 207 (710)
Q Consensus 200 ~lL~~l~D 207 (710)
+-...+--
T Consensus 154 ~C~~~~~p 161 (183)
T PF12295_consen 154 KCAKRLKP 161 (183)
T ss_pred HHHHHhhh
Confidence 88776643
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.71 E-value=4.4e+02 Score=29.88 Aligned_cols=104 Identities=21% Similarity=0.220 Sum_probs=75.8
Q ss_pred HHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCChhhHH--HHHHHHHHHHh------CCCCHHHHHHHHHH
Q 005167 129 IIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKE--MASVLLSALYA------DVISPDQIRDGFVI 200 (710)
Q Consensus 129 ii~EYf~~~D~~Ea~~~lkEL~~p~~~~~~v~~~V~~aLDr~~~eRE--l~s~LLs~L~~------~vls~~~i~~Gf~~ 200 (710)
++--|+..+|++||...+|++.+-.-+-++++-+|..++-..-.-|| .+++=+-+|++ +.|+..|-+.+.-=
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 45578999999999999999988777777888888888766544444 45566666764 56777787777666
Q ss_pred HHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCChhhHhh
Q 005167 201 LLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTR 239 (710)
Q Consensus 201 lL~~l~DL~lDiP~a~~~la~fiARaV~D~ilp~~~l~~ 239 (710)
|....+|.. .|+-.|=+-.+-||+.-.++-.-
T Consensus 371 L~~qFddVl-------~YlnSi~sYF~NdD~Fn~N~AQA 402 (557)
T KOG3785|consen 371 LSFQFDDVL-------TYLNSIESYFTNDDDFNLNLAQA 402 (557)
T ss_pred HHHHHHHHH-------HHHHHHHHHhcCcchhhhHHHHH
Confidence 777776644 46666666677888877766543
No 55
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=22.18 E-value=6.1e+02 Score=31.66 Aligned_cols=167 Identities=14% Similarity=0.120 Sum_probs=103.1
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcChHHHHHHHHHHHhccC--CchHHHHHHHHHHHHcC
Q 005167 274 RWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIR--TAEPLILKLLKEAAEEG 351 (710)
Q Consensus 274 ~Wgg~~~~~~eelkkki~~lL~EYl~s~D~~EA~rcl~EL~~P~fhhelV~~ai~~alE~~--~~~~~i~~LL~~L~~~~ 351 (710)
+-+..++||.. +..-++.+..+|=. ||.-....-+--+-|-+==..+-+|+- ..-.-=+.||..|.+.+
T Consensus 404 ~i~~~~~Wp~~-~~~vtn~lc~~Fr~--------rC~~a~~~~~~~~lf~rFkyKH~fErcTL~sl~DS~niLh~LL~~N 474 (824)
T PF02399_consen 404 VIPSCGGWPAQ-FSQVTNLLCCDFRR--------RCAPAFSYARGSVLFSRFKYKHYFERCTLNSLSDSLNILHTLLENN 474 (824)
T ss_pred cccCCCCCChh-HHHHHHHHHHHHHH--------hhhhhhhccccchHHhhhhhhhhhhhhhcccchhHHHHHHHHHHcC
Confidence 55555688854 44556666666632 454444211111111111133456654 22233478899999988
Q ss_pred CCCHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHcCCCChhhhhhhccCCCccccchhHHHHH-HHHHHHHHH
Q 005167 352 LISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYK-EEVVTIIHE 430 (710)
Q Consensus 352 ~is~~Q~~~Gf~rv~e~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~~~~~~s~ee~k-k~~~~il~E 430 (710)
-|+. .+++. |-|...+-|..|+..+..+-......++.++..+... .++..+-+. ..+..+++-
T Consensus 475 ~i~V------------~~~g~--~~~~~~e~F~~Fl~~~~~da~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~v~~F~~k 539 (824)
T PF02399_consen 475 RIRV------------RIDGC--DPPLTAESFCAFLRDLRADALAAQRDLRQLRPVNPPA-IPPGADLADSDEVGAFVEK 539 (824)
T ss_pred eeEE------------EEecC--CCCCCHHHHHHHHHHHHhhhHHHHHHHhhcccCCCCC-cCcchhhhccHHHHHHHHH
Confidence 7654 33332 3377888999999988887777777777777222111 111122222 268888999
Q ss_pred hhcCC-CHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 005167 431 YFLSD-DIPELIRSLEDLGAPEFNPIFLKKVITLA 464 (710)
Q Consensus 431 Yf~~~-D~~Ev~~~l~el~~p~~~~~~v~~~i~~a 464 (710)
|+..+ +..+....++.|+.|.-.+.||..++..|
T Consensus 540 yL~~~~~~~~~~~ll~~L~~p~~r~~FvN~~~l~a 574 (824)
T PF02399_consen 540 YLRPDVPIEDITELLKALASPIVRERFVNAAMLEA 574 (824)
T ss_pred HhcCCCChHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 99987 77888999999999999999999888753
No 56
>KOG4749 consensus Inositol polyphosphate kinase [Signal transduction mechanisms]
Probab=22.17 E-value=1.3e+02 Score=33.28 Aligned_cols=112 Identities=20% Similarity=0.251 Sum_probs=64.8
Q ss_pred hhHhhhhhcCCCCchHHHHHHHHHhhhccCCCchhHH----hhhhc---CCCCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Q 005167 235 AFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELV----ERRWG---GSTHITVEEVKKKIADLLREYVESGDAFEAC 307 (710)
Q Consensus 235 ~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~~l----~~~Wg---g~~~~~~eelkkki~~lL~EYl~s~D~~EA~ 307 (710)
+.+.+++++ +.-+...+-.+.|=++|++.||+.-|+ .-++| ||...+..++.-....++++++.+ |
T Consensus 173 sqisey~PL-DLfSG~k~rm~~AikaL~~~pqnnlrvF~nG~lv~gg~~~g~~kt~s~i~~~~~~~~k~~l~s-d----- 245 (375)
T KOG4749|consen 173 SQISEYDPL-DLFSGSKERMHKAIKALYSTPQNNLRVFLNGSLVFGGLGGGICKTTSEIELAFEDALKDFLKS-D----- 245 (375)
T ss_pred hhhhccCch-hhccccHHHHHHHHHHHhhccccceeEEeccceeecccCCCcccchhhhhHHHHHHHHHHhhh-h-----
Confidence 455555543 222233344455557899999876553 44566 444556778888899999999999 7
Q ss_pred HHHHHhCCCcChHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhcccc
Q 005167 308 RCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDD 371 (710)
Q Consensus 308 rcl~EL~~P~fhhelV~~ai~~alE~~~~~~~i~~LL~~L~~~~~is~~Q~~~Gf~rv~e~ldD 371 (710)
.|-+...++-.++|++.= +|.++.+-.-+..-.|+. .++++|.+|.
T Consensus 246 --~ra~~~~~~~~~~~~~~~---------------vL~qlL~vQklD~~~Ieg-ih~yyd~~dq 291 (375)
T KOG4749|consen 246 --LRALSFIELVAETVYRSG---------------VLDQLLEVQKLDKLDIEG-IHAYYDLIDQ 291 (375)
T ss_pred --hhhhhhhhhhHhHhhccc---------------hHHHHHHHhhhhhccchh-hHHHHhhccc
Confidence 334433344444444321 334444444444444433 7888887654
No 57
>KOG3922 consensus Sulfotransferases [Posttranslational modification, protein turnover, chaperones]
Probab=21.93 E-value=50 Score=36.08 Aligned_cols=45 Identities=36% Similarity=0.516 Sum_probs=35.3
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC--CCCCcH
Q 005167 570 RCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLG--MPFFNH 617 (710)
Q Consensus 570 ~~Wg~~~g~~~~~lk~ki~~ll~EY~~s~D~~EA~rCv~eL~--~p~fhh 617 (710)
+||-+|.-|..+.+| .++++||+..|-.+|...-|-=|+ +|+|-+
T Consensus 231 eC~e~gs~wALerAK---~nv~e~y~LVGvtEel~d~l~LLE~~lPrfFk 277 (361)
T KOG3922|consen 231 ECTEPGSVWALERAK---FNVEEEYLLVGVTEELEDFLSLLERYLPRFFK 277 (361)
T ss_pred ccCCCCCHHHHHHHH---HHHhhhheeeeeHHHHHHHHHHHHHHhHHHHH
Confidence 699998766655555 578999999999999988877666 577755
No 58
>cd08307 Death_Pelle Death domain of the protein kinase Pelle. Death domain (DD) of the protein kinase Pelle from Drosophila melanogaster and simlar proteins. In Drosophila, interaction between the DDs of Tube and Pelle is an important component of the Toll pathway, which functions in establishing dorsoventral polarity in embryos and in mediating innate immune responses to pathogens. Tube and Pelle transmit the signal from the Toll receptor to the Dorsal/Cactus complex. Pelle also functions in photoreceptor axon targeting. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=21.83 E-value=1.7e+02 Score=26.69 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=49.8
Q ss_pred hchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHHHHHHHHHHHHhcccccccccccccCCCCcchHHHHHHH
Q 005167 508 LDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGWAVEDAKDKI 587 (710)
Q Consensus 508 lDiP~a~~~La~fiARaV~Dd~l~p~~l~~~~~~~~~~~~g~~~l~~A~~lL~~~h~~~rl~~~Wg~~~g~~~~~lk~ki 587 (710)
+|..+.|..||..+- ..+...+..+.... +..+-..+-|.+.||.- |-++.++-
T Consensus 18 LD~~~~W~~LA~~i~------~ys~~~v~~i~~~~----------------~~g~SPt~eLL~~WG~~-n~Tv~~L~--- 71 (97)
T cd08307 18 LDTDNVWEELAFVMM------GYSNDDVEGIQRCC----------------LRGRSPTEELLDIWGNK-NHTITELF--- 71 (97)
T ss_pred hCCcCcHHHHHHHHh------cCCHHHHHHHHHHH----------------cCCCChHHHHHHHHhhc-CCCHHHHH---
Confidence 456689999998772 23334444433321 11122345577899875 45655543
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhCCCCCcH
Q 005167 588 MKLLEEYESGGVVSEACQCIRDLGMPFFNH 617 (710)
Q Consensus 588 ~~ll~EY~~s~D~~EA~rCv~eL~~p~fhh 617 (710)
++|...-.-+|.+.|+.+-.|.||+
T Consensus 72 -----~~L~k~kl~~Am~ilk~~v~~~~h~ 96 (97)
T cd08307 72 -----VLLYREKLFRAMRIIKDLVDPKYHY 96 (97)
T ss_pred -----HHHHHhchHHHHHHHHHhcChhccc
Confidence 4555566789999999998899985
No 59
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=21.80 E-value=1.1e+02 Score=29.89 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccc
Q 005167 339 LILKLLKEAAEEGLISSSQMAKGFARLEESLDDLAL 374 (710)
Q Consensus 339 ~i~~LL~~L~~~~~is~~Q~~~Gf~rv~e~ldDi~L 374 (710)
-..+||++|-..|.||.+||.+-|.-+-.+-++.-|
T Consensus 20 Gf~elL~qLT~vG~vt~e~F~krf~~mk~~~~~Y~i 55 (150)
T KOG3396|consen 20 GFIELLKQLTSVGVVTREQFEKRFEAMKKSGDWYYI 55 (150)
T ss_pred hHHHHHHHHhhccccCHHHHHHHHHHHHhcCCcEEE
Confidence 478999999999999999999999999888775443
No 60
>PRK05989 cobN cobaltochelatase subunit CobN; Reviewed
Probab=21.56 E-value=1e+03 Score=31.40 Aligned_cols=219 Identities=18% Similarity=0.193 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHh---hCC-CCChHHHHHHHHHHhcCCChhhHHHHHHHHHHH---HhCCCCHHH
Q 005167 121 DYKKAVASIIEEYFSTGDVEVAASDLRE---LGS-SEYHPYFIKRLVSMAMDRHDKEKEMASVLLSAL---YADVISPDQ 193 (710)
Q Consensus 121 e~~k~v~~ii~EYf~~~D~~Ea~~~lkE---L~~-p~~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L---~~~vls~~~ 193 (710)
-++|.+....+++-..|-..+.+...-- ... |.-+-.=|..+|.. ..=+.+.+++..-|+.. |++-....+
T Consensus 982 ~vr~h~~~~~~~l~~~G~~~~~A~~~a~~RIFg~~pG~YGaGv~~li~s--~~W~~~~dLa~~Yl~~~gyaYg~~~~G~~ 1059 (1244)
T PRK05989 982 PVRAHVRAELARLGARGLDEAEARRRATLRIFGSKPGAYGAGLQQLIDS--RNWRDDADLAEAYLNWGGYAYGRGVDGEA 1059 (1244)
T ss_pred HHHHHHHHHHHHHhhcCCChhhHhhhcccceecCCCCchhhhHHHHHhc--CCCCCHHHHHHHHHHhcCEecCCCCCccC
Confidence 3455666665555555533222222211 112 11222234444421 22256778888888877 444445666
Q ss_pred HHHHHHHHHhhhhhh----------hcchhhHHHHHHHHHHHH-HhcCCCChhhHhhhhhcC-CC-CchHHHHHHHHHhh
Q 005167 194 IRDGFVILLESADDL----------AVDILDAVDILALFVARA-VVDDILPPAFLTRAKKTL-PA-ASKGFQVIQTAEKS 260 (710)
Q Consensus 194 i~~Gf~~lL~~l~DL----------~lDiP~a~~~la~fiARa-V~D~ilp~~~l~~~~~~~-~~-~~~g~~~l~~a~~~ 260 (710)
-.+.|...|..++=. .+|.-+..+|.|.|.+-+ -..|--|..|+.+....- +. .....++-+..+..
T Consensus 1060 ~~~~f~~~L~~vd~v~~~~ds~e~dlld~ddyy~~~GGl~~Avr~l~G~~P~~y~~D~~~p~~~~vrtl~eei~r~~RsR 1139 (1244)
T PRK05989 1060 ARDLFEERLRRVQAVVQNQDSREHDLLDSDDYFQYHGGMTAAVRHLSGAAPAAYIGDHSRPDAPRIRTLKEEIARVVRSR 1139 (1244)
T ss_pred cHHHHHHHHhhCCEEEEcccccceecccCcchHhhhhHHHHHHHHhcCCCCCEEEeccCCCCCCeeecHHHHHHHHHHHH
Confidence 778888888776532 367889999999988554 446888989998875321 11 11222222223334
Q ss_pred hcc-------CCCc-------hhHHhhhhc-CCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcChHHHHHH
Q 005167 261 YLS-------APHH-------AELVERRWG-GSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKR 325 (710)
Q Consensus 261 lLs-------~~~~-------~~~l~~~Wg-g~~~~~~eelkkki~~lL~EYl~s~D~~EA~rcl~EL~~P~fhhelV~~ 325 (710)
+|+ +.|| .++|+++|| ..+.-.|+. ---+.+-+-|+... |..+.+++-| |+-..++..+
T Consensus 1140 ~lNPkWIegM~~HGY~GA~eia~~v~~l~Gw~aTt~~V~d--~~~~~v~~~yv~D~---~~~~~~~~~N-P~Al~~i~~R 1213 (1244)
T PRK05989 1140 VVNPKWIAGMKRHGYKGAFEMAATVDYLFGWDATTGVVDD--WMYEAVADTYVLDE---ENREFFEEHN-PWALREIAER 1213 (1244)
T ss_pred ccCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcccH--HHHHHHHHHHhcCH---HHHHHHHHhC-HHHHHHHHHH
Confidence 665 2455 357999999 221111211 13344555666554 5555677766 6666666665
Q ss_pred HHHHHhccC--C-chHHHHHHHHHHH
Q 005167 326 ALVLAMEIR--T-AEPLILKLLKEAA 348 (710)
Q Consensus 326 ai~~alE~~--~-~~~~i~~LL~~L~ 348 (710)
.+. +..+. + ..+.+.+.|+.+.
T Consensus 1214 lLE-A~~RG~W~a~~~~~~~~l~~~~ 1238 (1244)
T PRK05989 1214 LLE-AARRGLWQAPDPETLELLEELY 1238 (1244)
T ss_pred HHH-HHhCCCCCCCcHHHHHHHHHHH
Confidence 554 33343 3 3445556666655
No 61
>PRK09498 sifA secreted effector protein SifA; Reviewed
Probab=21.55 E-value=1.5e+02 Score=32.20 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhCCC
Q 005167 290 IADLLREYVESGDAFEACRCIRELGVS 316 (710)
Q Consensus 290 i~~lL~EYl~s~D~~EA~rcl~EL~~P 316 (710)
+=+=+|+||.|--..||-+||+||--|
T Consensus 30 LWEKIKdFFcSThqaeA~~CI~eLchp 56 (336)
T PRK09498 30 LWEKIKDFFFSTGKAKADRCLHEMLFA 56 (336)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhCC
Confidence 334578999999999999999999644
No 62
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=21.49 E-value=8.7e+02 Score=24.71 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=20.2
Q ss_pred cCCHHHHHHHHHhhCCCCCcHHHHHHHHHHHhccCchHH-HHHHHHHHHcC
Q 005167 597 GGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRM-LDLLQECFSEG 646 (710)
Q Consensus 597 s~D~~EA~rCv~eL~~p~fhhe~Vk~al~~alE~~~~~~-~~LL~~l~~~~ 646 (710)
.++.+++.+++++. ..+|...|.+ -.+++.|++..
T Consensus 143 ~~~~~~i~~~~~~I---------------~~lE~e~D~i~~~~~~~Lf~~e 178 (216)
T TIGR00153 143 ETDLSLANDIIKEI---------------KDLEDEIDVMQIRIYKKLYNLE 178 (216)
T ss_pred hccHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhcc
Confidence 34455566655555 2466666654 55667777543
No 63
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=21.37 E-value=1.7e+03 Score=29.63 Aligned_cols=174 Identities=13% Similarity=0.166 Sum_probs=104.2
Q ss_pred CCCCHHHHHHHHHHHHhh------------hhhhhcchhhHHHHHHHHHHHHHhcCCCChhhHhhhhhcCCCCchHHHHH
Q 005167 187 DVISPDQIRDGFVILLES------------ADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVI 254 (710)
Q Consensus 187 ~vls~~~i~~Gf~~lL~~------------l~DL~lDiP~a~~~la~fiARaV~D~ilp~~~l~~~~~~~~~~~~g~~~l 254 (710)
-.-+.++|.+++..+|+. ...-..++|.-.+|.-..+-.++..+++.+..+..+...-.++.....++
T Consensus 918 ~~~~~~~I~~i~m~iL~~ic~~~qk~~~~~vs~a~s~~~~~~e~n~~~~~~L~~~~l~~~~~vd~~l~~amDs~~n~~vi 997 (1591)
T KOG1831|consen 918 LDFSTEKIFKIIMEILDNICRFIQKAGVRKVSEAISSSRSSLEYNIEKAEHLILSLLLDSGHVDKHLAKAMDSGGNQEVI 997 (1591)
T ss_pred HhhcchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhchHHHHhhHHHHHHHHHHhccChhhHHHHHHHHhccCCChHHH
Confidence 456788899999988888 45556688888899999999999999999998888654433333334455
Q ss_pred HHHHhhhccCCCch-hHHhhhhcCCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcC---------------
Q 005167 255 QTAEKSYLSAPHHA-ELVERRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFF--------------- 318 (710)
Q Consensus 255 ~~a~~~lLs~~~~~-~~l~~~Wgg~~~~~~eelkkki~~lL~EYl~s~D~~EA~rcl~EL~~P~f--------------- 318 (710)
.-+-+ +|...-+. .-+...|.+--..+.+++-+ +.....-| -|..|=+...-+..+-++
T Consensus 998 ~f~ie-ll~~~~~~dnvi~~~~~~~~~~t~E~~~r-i~q~v~s~---~~~~g~~~~~~~~~v~~~~k~~s~~~~m~~~~~ 1072 (1591)
T KOG1831|consen 998 AFLIE-LLRIAYGGDNVIADEWKNLFKETKEELFR-ILQSVESS---EDKSGECASLCDYIVEHAIKSGSSADFMFRRMD 1072 (1591)
T ss_pred HHHHH-HHHHhccCcchhhhhhhhhhhhHHHHHHH-HHHHHhcc---cccchhhhhHHHHHHHhccCCCCchhHHHHhcC
Confidence 55532 34333333 33555666544445555544 44444333 222222211222211111
Q ss_pred -------hHHHHHHHHHHHhccC-CchHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 005167 319 -------HHEVVKRALVLAMEIR-TAEPLILKLLKEAAEEGLISSSQMAKGFARL 365 (710)
Q Consensus 319 -------hhelV~~ai~~alE~~-~~~~~i~~LL~~L~~~~~is~~Q~~~Gf~rv 365 (710)
.-++|-..=+.-+-+. +........++.+.+.|+++.+|...-|-|-
T Consensus 1073 ~~~~lt~K~~~v~~~Wv~L~~~~~~~~~s~~~fi~ql~~~GVls~dd~ltqFfr~ 1127 (1591)
T KOG1831|consen 1073 DKQKLTEKTEIVFLEWVILLNDSRKNDESLAAFIQQLNEIGVLSTDDLLTQFFRA 1127 (1591)
T ss_pred cchhhhhHHHHHHHHHHHHHhccccchHHHHHHHHHHHHcCcccchHHHHHHHHh
Confidence 1133333333223222 3445678889999999999999988887764
No 64
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=21.06 E-value=9.6e+02 Score=25.02 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=37.5
Q ss_pred CCchhHHhhhhcCCCCCCHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHhCCCcChHHHHHHHHHHHh
Q 005167 265 PHHAELVERRWGGSTHITVEEVKKKIADLL-REYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAM 331 (710)
Q Consensus 265 ~~~~~~l~~~Wgg~~~~~~eelkkki~~lL-~EYl~s~D~~EA~rcl~EL~~P~fhhelV~~ai~~al 331 (710)
.-|..|+.+.||-.+..+++++++....++ +||.. ++||-+|.-+=....
T Consensus 138 DTHV~Rvs~R~gl~~~~~p~~ve~~L~~~iP~~~~~-----------------~~h~~lI~~GR~iC~ 188 (211)
T COG0177 138 DTHVHRVSNRLGLVPGKTPEEVEEALMKLIPKELWT-----------------DLHHWLILHGRYICK 188 (211)
T ss_pred cchHHHHHHHhCCCCCCCHHHHHHHHHHHCCHHHHH-----------------HHHHHHHHhhhhhcc
Confidence 345679999999777888999998888887 55553 678888775544333
No 65
>PF08785 Ku_PK_bind: Ku C terminal domain like; InterPro: IPR014893 The non-homologous end joining (NHEJ) pathway is one method by which double stranded breaks in chromosomal DNA are repaired. Ku is a component of a multi-protein complex that is involved in the NHEJ. Ku has affinity for DNA ends and recruits the DNA-dependent protein kinase catalytic subunit (DNA-PKcs). This domain is found at the C-terminal of Ku which binds to DNA-PKcs []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 1RW2_A 1Q2Z_A 3ISM_C.
Probab=20.47 E-value=52 Score=30.85 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhh-------CCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHHcCCCCHH
Q 005167 581 EDAKDKIMKLLEEYESGGVVSEACQCIRDL-------GMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTN 651 (710)
Q Consensus 581 ~~lk~ki~~ll~EY~~s~D~~EA~rCv~eL-------~~p~fhhe~Vk~al~~alE~~~~~~~~LL~~l~~~~~it~~ 651 (710)
.+++..|..||..- ....+..|..||+-| +-|..+..|+++.=...+.+....+|.++.. -.-|+||.+
T Consensus 25 ~qM~~vI~~Lv~~s-~~~~y~kalecl~~lR~~~i~~~ep~~yN~Fl~~LK~~~~~~~~~~FW~~i~~-~~l~LI~~~ 100 (120)
T PF08785_consen 25 QQMKNVIEQLVSDS-GDQNYDKALECLRALREECIEEEEPDEYNDFLRKLKKKLLSKDRRDFWELIVS-KKLGLISKD 100 (120)
T ss_dssp HHHHHHHHHHHHCS-HCHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHCTTTCHHHHCCCC-CT-SS-SST
T ss_pred HHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccHHHHHHHHHH-cCCCcccHh
Confidence 44444444455444 444789999999855 5577777777776666666555555655443 334555543
Done!