Query 005167
Match_columns 710
No_of_seqs 353 out of 569
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 17:25:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eiq_C Programmed cell death p 100.0 3.5E-87 1.2E-91 723.0 27.9 338 71-410 2-342 (358)
2 2zu6_B Programmed cell death p 100.0 1.7E-72 5.8E-77 598.4 27.0 285 419-704 1-290 (307)
3 3eiq_C Programmed cell death p 100.0 2E-72 6.9E-77 607.8 27.5 292 411-703 44-340 (358)
4 2zu6_B Programmed cell death p 100.0 5.8E-72 2E-76 594.4 26.4 288 121-410 1-291 (307)
5 2rg8_A Programmed cell death p 100.0 2E-42 6.9E-47 337.2 15.9 163 414-577 3-165 (165)
6 2rg8_A Programmed cell death p 100.0 1.9E-41 6.4E-46 330.4 16.6 163 115-279 2-164 (165)
7 2nsz_A Programmed cell death p 100.0 2.8E-34 9.6E-39 269.2 11.6 127 281-407 1-129 (129)
8 2ion_A PDCD4, programmed cell 100.0 7E-34 2.4E-38 273.5 11.5 131 280-410 2-136 (152)
9 2nsz_A Programmed cell death p 100.0 1.9E-32 6.4E-37 256.8 11.2 121 579-699 2-126 (129)
10 2ion_A PDCD4, programmed cell 100.0 9.6E-32 3.3E-36 258.6 11.3 124 578-701 3-130 (152)
11 3l6a_A Eukaryotic translation 100.0 2.4E-26 8.2E-31 249.7 29.2 292 117-428 6-358 (364)
12 1ug3_A EIF4GI, eukaryotic prot 99.9 1.1E-27 3.7E-32 258.0 8.5 164 115-279 3-168 (339)
13 3l6a_A Eukaryotic translation 99.9 1.1E-25 3.6E-30 244.6 18.3 265 415-693 6-330 (364)
14 1ug3_A EIF4GI, eukaryotic prot 99.9 1.9E-26 6.5E-31 248.3 10.2 273 413-693 3-325 (339)
15 3kh1_A Predicted metal-depende 73.3 18 0.00062 35.7 10.2 81 581-692 113-199 (200)
16 4g26_A Pentatricopeptide repea 63.8 1.4E+02 0.0048 32.8 16.2 157 290-485 29-204 (501)
17 3kh1_A Predicted metal-depende 47.9 28 0.00096 34.3 6.3 81 284-397 113-199 (200)
18 4b8b_A General negative regula 44.4 68 0.0023 36.6 9.3 89 119-207 444-543 (603)
19 3dad_A FH1/FH2 domain-containi 37.7 64 0.0022 34.4 7.4 169 300-478 129-327 (339)
20 4b8b_A General negative regula 35.6 1.4E+02 0.0048 34.1 10.1 88 418-505 445-543 (603)
21 4fu3_A Regulation of nuclear P 23.3 1.2E+02 0.004 27.2 5.6 119 279-405 2-126 (135)
22 3fp5_A Acyl-COA binding protei 22.3 68 0.0023 28.4 3.7 42 273-314 63-104 (106)
23 1w53_A Phosphoserine phosphata 21.7 3.2E+02 0.011 23.2 7.5 72 283-368 4-76 (84)
24 1efy_A Poly (ADP-ribose) polym 20.9 2.3E+02 0.0079 30.0 8.2 119 350-483 37-161 (350)
No 1
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=100.00 E-value=3.5e-87 Score=722.95 Aligned_cols=338 Identities=30% Similarity=0.468 Sum_probs=267.9
Q ss_pred CCCCCcccccccCcCccccccCCCCCCCCCCCCCCCCcccccccCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Q 005167 71 VKKDGAGGKGTWGKLLDTDVESHIDRNDPNYDSGEEPYQLVGATISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELG 150 (710)
Q Consensus 71 ~kk~G~ggk~~Wg~~~~~~~~~~lD~~DPNyds~~~~~~~~~~~~~~s~ee~~k~v~~ii~EYf~~~D~~Ea~~~lkEL~ 150 (710)
|.|+|+|||||||++++++++..+|++||||||+++++++....+++|++||+|++++||+|||+++|++||+.||+|||
T Consensus 2 ~~~~~~~gk~~wg~~~~~~~~~~~d~~dpnyd~~~~~~~~~~~~p~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 2 PLGSPEFGKGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp ------------------------------------------------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred CCCCCCCCCCcCCCCcCcCcccCCCccCCCCCCCCCCceeecCCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 67899999999999999888888999999999988887666666889999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcC
Q 005167 151 SSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVILLESADDLAVDILDAVDILALFVARAVVDD 230 (710)
Q Consensus 151 ~p~~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~~vls~~~i~~Gf~~lL~~l~DL~lDiP~a~~~la~fiARaV~D~ 230 (710)
.|.|++.||+++|++||||+++||||+|+||++||++++|++||.+||.++|++++|+++|+|+||++||+||||||+||
T Consensus 82 ~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~ 161 (358)
T 3eiq_C 82 LGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDG 161 (358)
T ss_dssp CCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTTTSCCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHhhhhhcCCCCchHHHHHHHHHhhhccCCCchhHHhhhhc-CCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 005167 231 ILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWG-GSTHITVEEVKKKIADLLREYVESGDAFEACRC 309 (710)
Q Consensus 231 ilp~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~~l~~~Wg-g~~~~~~eelkkki~~lL~EYl~s~D~~EA~rc 309 (710)
+|||+||.++...+ .++.|+++|++|+ ++|+++||.+|++|+|| |++.++++++++||+++|+|||++||++||++|
T Consensus 162 ~l~~~~l~~~~~~~-~~~~~~~~l~~a~-~~L~~~~~~~~~~~~WG~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~c 239 (358)
T 3eiq_C 162 ILCNTYIDSYKGTV-DCVQARAALDKAT-VLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHC 239 (358)
T ss_dssp CSCSSTTGGGC----CCHHHHHHHHHHH-HHHTC---------CCCCCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCHHHHHHHhhcc-cchHHHHHHHHHH-HHHhccchHHHHHHhcCCCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 99999999987665 4578999999996 89999999999999999 555679999999999999999999999999999
Q ss_pred HHHhCCCcChHHHHHHHHHHHhccC--CchHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccccccccccccHHHHHHHH
Q 005167 310 IRELGVSFFHHEVVKRALVLAMEIR--TAEPLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIV 387 (710)
Q Consensus 310 l~EL~~P~fhhelV~~ai~~alE~~--~~~~~i~~LL~~L~~~~~is~~Q~~~Gf~rv~e~ldDi~LDvP~A~~~l~~~v 387 (710)
|+||++|+|||+||+++|+++||++ .+++++++||++|.++|+||++||.+||.|+++.++||+||||+||.+|++|+
T Consensus 240 i~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v 319 (358)
T 3eiq_C 240 LKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFV 319 (358)
T ss_dssp HHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHH
Confidence 9999999999999999999999985 46789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCChhhhhhhccCCCc
Q 005167 388 PVAISEGWLDASFMKSLGEDGRV 410 (710)
Q Consensus 388 ~~~~~~g~l~~~~~~~~~~~~~~ 410 (710)
.+|+.+|||+.+|+..+|++|||
T Consensus 320 arai~~g~l~~~f~~~~p~r~rk 342 (358)
T 3eiq_C 320 EECFQAGIISKQLRDLCPSRGRK 342 (358)
T ss_dssp HHHHHHTSSCHHHHTTCCCC---
T ss_pred HHHHHCCCCCHHHHHhCcccCCc
Confidence 99999999999999999999998
No 2
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=100.00 E-value=1.7e-72 Score=598.44 Aligned_cols=285 Identities=29% Similarity=0.475 Sum_probs=269.8
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhccCChHHHHHHHHH
Q 005167 419 RYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVM 498 (710)
Q Consensus 419 e~kk~~~~il~EYf~~~D~~Ev~~~l~el~~p~~~~~~v~~~i~~alDrk~~eREl~s~LLs~L~~~~ls~~~i~~Gf~~ 498 (710)
||+|++++||+|||++||++|++.|++||++|.|++.||+++|++||||+++||||+|+||++||+.++|++||.+||.+
T Consensus 1 e~~k~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ 80 (307)
T 2zu6_B 1 AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDK 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHhhhhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHHHHHHHHHHHHhcccccccccccccCCCCc
Q 005167 499 LLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWGGGTGW 578 (710)
Q Consensus 499 lL~~l~Dl~lDiP~a~~~La~fiARaV~Dd~l~p~~l~~~~~~~~~~~~g~~~l~~A~~lL~~~h~~~rl~~~Wg~~~g~ 578 (710)
+|++++|+++|+|+||++||.||||||+|+++||+||.++... +.++.|++++++|+++|+++|+++|++||||+|+|+
T Consensus 81 ll~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~-~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~ 159 (307)
T 2zu6_B 81 LLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGT-VDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQ 159 (307)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTT-CCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTT
T ss_pred HHHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhc-ccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCC
Confidence 9999999999999999999999999999999999999998875 467899999999999999999999999999998887
Q ss_pred -chHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCcHHHHHHHHHHHhccCch----HHHHHHHHHHHcCCCCHHHH
Q 005167 579 -AVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKND----RMLDLLQECFSEGLITTNQM 653 (710)
Q Consensus 579 -~~~~lk~ki~~ll~EY~~s~D~~EA~rCv~eL~~p~fhhe~Vk~al~~alE~~~~----~~~~LL~~l~~~~~it~~q~ 653 (710)
++++++++|+++|+||+++||++||++||+||++|+||||||+++|+++||++++ .+++||++|.++|+||++||
T Consensus 160 ~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 160 QSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 6999999999999999999999999999999999999999999999999999743 58999999999999999999
Q ss_pred HhHHHHHhhccchhhccccchHHHHHHHHHHHHHcCCCCCccccCccCCCC
Q 005167 654 TKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVADASP 704 (710)
Q Consensus 654 ~~Gf~rv~~~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~ 704 (710)
.+||.||++.|+|++||||+||.+|++|+++|+.+|||+.+|....+..++
T Consensus 240 ~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~~~~~r 290 (307)
T 2zu6_B 240 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRGR 290 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHHTSCCC--
T ss_pred HHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhCCcccc
Confidence 999999999999999999999999999999999999999999987665443
No 3
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=100.00 E-value=2e-72 Score=607.83 Aligned_cols=292 Identities=29% Similarity=0.457 Sum_probs=264.7
Q ss_pred cccchhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhccCChH
Q 005167 411 QQEDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTE 490 (710)
Q Consensus 411 ~~~~~s~ee~kk~~~~il~EYf~~~D~~Ev~~~l~el~~p~~~~~~v~~~i~~alDrk~~eREl~s~LLs~L~~~~ls~~ 490 (710)
....+|++||+|++++||+|||+++|++|++.||+|||.|.|++.||+++|++||||+++||||+|+||++||+.++|++
T Consensus 44 ~~p~ls~ee~~k~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~~~ls~~ 123 (358)
T 3eiq_C 44 VVLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTN 123 (358)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTTTSCCHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCCHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHHHHHHHHHHHHhcccccccccc
Q 005167 491 DIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLR 570 (710)
Q Consensus 491 ~i~~Gf~~lL~~l~Dl~lDiP~a~~~La~fiARaV~Dd~l~p~~l~~~~~~~~~~~~g~~~l~~A~~lL~~~h~~~rl~~ 570 (710)
||.+||.++|++++|+++|+|+||++||.||||||+|+++||+||.++.... .++.|+++|++|+++|+++|+.+||+|
T Consensus 124 ~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~-~~~~~~~~l~~a~~~L~~~~~~~~~~~ 202 (358)
T 3eiq_C 124 DVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-DCVQARAALDKATVLLSMSKGGKRKDS 202 (358)
T ss_dssp HHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC----CCHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcc-cchHHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999987654 567899999999999999999999999
Q ss_pred cccCCCCc-chHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCcHHHHHHHHHHHhccCch----HHHHHHHHHHHc
Q 005167 571 CWGGGTGW-AVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKND----RMLDLLQECFSE 645 (710)
Q Consensus 571 ~Wg~~~g~-~~~~lk~ki~~ll~EY~~s~D~~EA~rCv~eL~~p~fhhe~Vk~al~~alE~~~~----~~~~LL~~l~~~ 645 (710)
|||+|+|+ +++++++||+++|+||+++||++||++||+||++||||||||++||+++||++++ ++++||++|.++
T Consensus 203 ~WG~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~ 282 (358)
T 3eiq_C 203 VWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 282 (358)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred hcCCCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 99998887 6999999999999999999999999999999999999999999999999999743 589999999999
Q ss_pred CCCCHHHHHhHHHHHhhccchhhccccchHHHHHHHHHHHHHcCCCCCccccCccCCC
Q 005167 646 GLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVADAS 703 (710)
Q Consensus 646 ~~it~~q~~~Gf~rv~~~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~ 703 (710)
|+||++||.+||.||++.|+|++||||+||.+|++|+++|+.+|||+.+|....+.-+
T Consensus 283 glls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~varai~~g~l~~~f~~~~p~r~ 340 (358)
T 3eiq_C 283 STITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRG 340 (358)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHTTCCCC-
T ss_pred CCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhCcccC
Confidence 9999999999999999999999999999999999999999999999999988776543
No 4
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=100.00 E-value=5.8e-72 Score=594.36 Aligned_cols=288 Identities=31% Similarity=0.491 Sum_probs=272.8
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005167 121 DYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQIRDGFVI 200 (710)
Q Consensus 121 e~~k~v~~ii~EYf~~~D~~Ea~~~lkEL~~p~~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~~vls~~~i~~Gf~~ 200 (710)
||+|++++||+|||+++|++||+.|++|||.|.|++.||+++|++||||+++|||++|+||++||++++|++||.+||..
T Consensus 1 e~~k~~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ 80 (307)
T 2zu6_B 1 AFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDK 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCChhhHhhhhhcCCCCchHHHHHHHHHhhhccCCCchhHHhhhhc-CCC
Q 005167 201 LLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERRWG-GST 279 (710)
Q Consensus 201 lL~~l~DL~lDiP~a~~~la~fiARaV~D~ilp~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~~l~~~Wg-g~~ 279 (710)
+|++++|+++|+|+||+++|.||||||+||+|||+|+.++... +.++.|++++++|+ ++|+++||.++++++|| |++
T Consensus 81 ll~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~-~~~~~g~~~l~~a~-~~l~~~~~~~~~~~~WG~~~~ 158 (307)
T 2zu6_B 81 LLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGT-VDCVQARAALDKAT-VLLSMSKGGKRKDSVWGSGGG 158 (307)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTT-CCCHHHHHHHHHHH-HHHHTCC----CCCSSCCCST
T ss_pred HHHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhc-ccchHHHHHHHHHH-HHhcccccHhHHhhhcCCCCC
Confidence 9999999999999999999999999999999999999998875 56789999999996 89999999999999999 545
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcChHHHHHHHHHHHhccC--CchHHHHHHHHHHHHcCCCCHHH
Q 005167 280 HITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIR--TAEPLILKLLKEAAEEGLISSSQ 357 (710)
Q Consensus 280 ~~~~eelkkki~~lL~EYl~s~D~~EA~rcl~EL~~P~fhhelV~~ai~~alE~~--~~~~~i~~LL~~L~~~~~is~~Q 357 (710)
.+|+++++++|+++|+||+++||++||++||+||++|+|||+||+++|+++||++ .+++++++||++|.++|+||++|
T Consensus 159 ~~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 159 QQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 6799999999999999999999999999999999999999999999999999986 46789999999999999999999
Q ss_pred HHHHHHHHhhccccccccccccHHHHHHHHHHHHHcCCCChhhhhhhccCCCc
Q 005167 358 MAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRV 410 (710)
Q Consensus 358 ~~~Gf~rv~e~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~ 410 (710)
|.+||.|+++.++|++||||+||++|++|+.+|+.+|||+.+|++.+|++|||
T Consensus 239 ~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~~~~~rk 291 (307)
T 2zu6_B 239 MKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRGRK 291 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSCHHHHHTSCCC---
T ss_pred HHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCCHHHHHhCCccccc
Confidence 99999999999999999999999999999999999999999999999999998
No 5
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=100.00 E-value=2e-42 Score=337.24 Aligned_cols=163 Identities=28% Similarity=0.408 Sum_probs=144.5
Q ss_pred chhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhccCChHHHH
Q 005167 414 DEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIEIFSTEDIV 493 (710)
Q Consensus 414 ~~s~ee~kk~~~~il~EYf~~~D~~Ev~~~l~el~~p~~~~~~v~~~i~~alDrk~~eREl~s~LLs~L~~~~ls~~~i~ 493 (710)
.++.++|+|+++++|+|||+++|++|++.|++||+.|.|++.||+++|++|||||++|||++|+||++||+.++|++||.
T Consensus 3 ~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~~~ls~~~i~ 82 (165)
T 2rg8_A 3 PLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVE 82 (165)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBTTTBCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCCHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHHHHHHHHHHHHhccccccccccccc
Q 005167 494 NGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCWG 573 (710)
Q Consensus 494 ~Gf~~lL~~l~Dl~lDiP~a~~~La~fiARaV~Dd~l~p~~l~~~~~~~~~~~~g~~~l~~A~~lL~~~h~~~rl~~~Wg 573 (710)
+||.+++++++|+++|+|+||+++|+|+||||+|+++||+||.++... +.++.|++++++|+++|+++|+.+|++||||
T Consensus 83 ~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~~-~~~~~~~~~l~~a~~ll~~~~~~~~~~~~Wg 161 (165)
T 2rg8_A 83 KSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGT-VDCVQARAALDKATVLLSMSKGGKRKDSVWG 161 (165)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTTT-CCCHHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHhChhhcccccchHHHHHHHHHHHHHcCCCCHHHHHHHHhc-cCchHHHHHHHHHHHHHhccccHHHHHhhcC
Confidence 999999999999999999999999999999999999999999998886 7788999999999999999999999999999
Q ss_pred CCCC
Q 005167 574 GGTG 577 (710)
Q Consensus 574 ~~~g 577 (710)
+|||
T Consensus 162 ~g~g 165 (165)
T 2rg8_A 162 SGGG 165 (165)
T ss_dssp ----
T ss_pred CCCC
Confidence 9986
No 6
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=100.00 E-value=1.9e-41 Score=330.41 Aligned_cols=163 Identities=29% Similarity=0.409 Sum_probs=145.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhCCCCHHHH
Q 005167 115 ISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPDQI 194 (710)
Q Consensus 115 ~~~s~ee~~k~v~~ii~EYf~~~D~~Ea~~~lkEL~~p~~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~~vls~~~i 194 (710)
+++|+++|+|+++++|+|||+++|++||++|++||+.|.|++.||+++|++||||+++|||++|+||++||++++|++||
T Consensus 2 p~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~~~ls~~~i 81 (165)
T 2rg8_A 2 LPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDV 81 (165)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBTTTBCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCChhhHhhhhhcCCCCchHHHHHHHHHhhhccCCCchhHHhhh
Q 005167 195 RDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVERR 274 (710)
Q Consensus 195 ~~Gf~~lL~~l~DL~lDiP~a~~~la~fiARaV~D~ilp~~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~~l~~~ 274 (710)
.+||..++++++|+++|+|+||+++|+|+||+|.||+|||+|+.+.... +.++.|++++++|+ ++|+++||.+|++|+
T Consensus 82 ~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~~l~~~~l~~~~~~-~~~~~~~~~l~~a~-~ll~~~~~~~~~~~~ 159 (165)
T 2rg8_A 82 EKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGT-VDCVQARAALDKAT-VLLSMSKGGKRKDSV 159 (165)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTHHHHTTTT-CCCHHHHHHHHHHH-HHHHTC---------
T ss_pred HHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcCCCCHHHHHHHHhc-cCchHHHHHHHHHH-HHHhccccHHHHHhh
Confidence 9999999999999999999999999999999999999999999999887 78889999999997 899999999999999
Q ss_pred hcCCC
Q 005167 275 WGGST 279 (710)
Q Consensus 275 Wgg~~ 279 (710)
||+|+
T Consensus 160 Wg~g~ 164 (165)
T 2rg8_A 160 WGSGG 164 (165)
T ss_dssp -----
T ss_pred cCCCC
Confidence 99765
No 7
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=100.00 E-value=2.8e-34 Score=269.17 Aligned_cols=127 Identities=32% Similarity=0.531 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcChHHHHHHHHHHHhccC--CchHHHHHHHHHHHHcCCCCHHHH
Q 005167 281 ITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIR--TAEPLILKLLKEAAEEGLISSSQM 358 (710)
Q Consensus 281 ~~~eelkkki~~lL~EYl~s~D~~EA~rcl~EL~~P~fhhelV~~ai~~alE~~--~~~~~i~~LL~~L~~~~~is~~Q~ 358 (710)
+|++++++|++++|+|||++||++||++||+||++|+|||+||+++|+++||++ .+++++++||++|.++|+||++||
T Consensus 1 ~p~eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 1 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 578999999999999999999999999999999999999999999999999986 457899999999999999999999
Q ss_pred HHHHHHHhhccccccccccccHHHHHHHHHHHHHcCCCChhhhhhhccC
Q 005167 359 AKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGED 407 (710)
Q Consensus 359 ~~Gf~rv~e~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~ 407 (710)
.+||.|+++.++|++||+|+||++|++|+.+|+.+|||+.+|+..+|+|
T Consensus 81 ~~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~~~~p~~ 129 (129)
T 2nsz_A 81 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSR 129 (129)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCTTC
T ss_pred HHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHhhCCCC
Confidence 9999999999999999999999999999999999999999999999875
No 8
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=100.00 E-value=7e-34 Score=273.47 Aligned_cols=131 Identities=33% Similarity=0.543 Sum_probs=123.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcChHHHHHHHHHHHhccC--CchHHHHHHHHHHHHcCCCCHHH
Q 005167 280 HITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIR--TAEPLILKLLKEAAEEGLISSSQ 357 (710)
Q Consensus 280 ~~~~eelkkki~~lL~EYl~s~D~~EA~rcl~EL~~P~fhhelV~~ai~~alE~~--~~~~~i~~LL~~L~~~~~is~~Q 357 (710)
++|+++++++|+++|+|||++||++||++||+||++|+|||+||+++|+++||++ .+++++++||++|.++|+||++|
T Consensus 2 ~~~~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 2 QQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred CChHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 5789999999999999999999999999999999999999999999999999984 56889999999999999999999
Q ss_pred HHHHHHHHhhccccccccccccHHHHHHHHHHHHHcCCCChhhhhhhcc--CCCc
Q 005167 358 MAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGE--DGRV 410 (710)
Q Consensus 358 ~~~Gf~rv~e~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~--~~~~ 410 (710)
|.+||.|+++.++||+||||+||++|++|+.+|+.+|||+.+|+..+|+ +|||
T Consensus 82 ~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~p~~~~~rk 136 (152)
T 2ion_A 82 MKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPSRSRGRK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCTTC-----
T ss_pred HHHHHHHHHHhChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHhCCCcccchh
Confidence 9999999999999999999999999999999999999999999999998 8888
No 9
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=99.97 E-value=1.9e-32 Score=256.77 Aligned_cols=121 Identities=32% Similarity=0.563 Sum_probs=116.0
Q ss_pred chHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCcHHHHHHHHHHHhccCc----hHHHHHHHHHHHcCCCCHHHHH
Q 005167 579 AVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKN----DRMLDLLQECFSEGLITTNQMT 654 (710)
Q Consensus 579 ~~~~lk~ki~~ll~EY~~s~D~~EA~rCv~eL~~p~fhhe~Vk~al~~alE~~~----~~~~~LL~~l~~~~~it~~q~~ 654 (710)
++++++++|+++|+||+++||++||++||+||++|+|||+||+++|+++||+++ +.+++||++|+++|+||++||.
T Consensus 2 p~eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~ 81 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 81 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 579999999999999999999999999999999999999999999999999975 2589999999999999999999
Q ss_pred hHHHHHhhccchhhccccchHHHHHHHHHHHHHcCCCCCccccCc
Q 005167 655 KGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCV 699 (710)
Q Consensus 655 ~Gf~rv~~~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~ 699 (710)
+||.|+++.|||++||+|+||++|++|+++|+.+|||+.+|...-
T Consensus 82 ~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~~~~ 126 (129)
T 2nsz_A 82 RGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLC 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTC
T ss_pred HHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHhhC
Confidence 999999999999999999999999999999999999999987643
No 10
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=99.97 E-value=9.6e-32 Score=258.61 Aligned_cols=124 Identities=31% Similarity=0.550 Sum_probs=118.0
Q ss_pred cchHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCcHHHHHHHHHHHhccCch----HHHHHHHHHHHcCCCCHHHH
Q 005167 578 WAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKND----RMLDLLQECFSEGLITTNQM 653 (710)
Q Consensus 578 ~~~~~lk~ki~~ll~EY~~s~D~~EA~rCv~eL~~p~fhhe~Vk~al~~alE~~~~----~~~~LL~~l~~~~~it~~q~ 653 (710)
.++++++++|+++|+||+++||++||++||+||++|+|||+||+++|+++||++++ .+++||++|+++|+||++||
T Consensus 3 ~~~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 3 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 46899999999999999999999999999999999999999999999999999632 58999999999999999999
Q ss_pred HhHHHHHhhccchhhccccchHHHHHHHHHHHHHcCCCCCccccCccC
Q 005167 654 TKGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLLPAFGSCVAD 701 (710)
Q Consensus 654 ~~Gf~rv~~~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~ 701 (710)
.+||.||++.|||++||||+||++|++|+.+|+.+|||+.+|....+.
T Consensus 83 ~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~~g~l~~~~~~~~p~ 130 (152)
T 2ion_A 83 KRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDLCPS 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHTCTT
T ss_pred HHHHHHHHHhChHhccCccchHHHHHHHHHHHHHCCCCCHHHHHhCCC
Confidence 999999999999999999999999999999999999999999887544
No 11
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.4e-26 Score=249.68 Aligned_cols=292 Identities=15% Similarity=0.229 Sum_probs=204.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCC-ChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh-CCCCHHHH
Q 005167 117 DPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSE-YHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DVISPDQI 194 (710)
Q Consensus 117 ~s~ee~~k~v~~ii~EYf~~~D~~Ea~~~lkEL~~p~-~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~-~vls~~~i 194 (710)
-|.+|+.|++++||+|||+++|++||++|++||+.|. |++.||+.+|++||||++.+||++++||++|++ +++|++||
T Consensus 6 ~~~~~~~k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~ 85 (364)
T 3l6a_A 6 HSKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNF 85 (364)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4789999999999999999999999999999999996 999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCChhhHhhhhhcCCCCchH---HHHHHHHHhhhccCCCchhHH
Q 005167 195 RDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPPAFLTRAKKTLPAASKG---FQVIQTAEKSYLSAPHHAELV 271 (710)
Q Consensus 195 ~~Gf~~lL~~l~DL~lDiP~a~~~la~fiARaV~D~ilp~~~l~~~~~~~~~~~~g---~~~l~~a~~~lLs~~~~~~~l 271 (710)
.+||.++++.++|+.+|+|+||+++|+|+||+|.||++|++++.+.... |..+ ..+++. +....|...+
T Consensus 86 ~~Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~---G~~~~l~l~vl~~-----~~k~~G~~~l 157 (364)
T 3l6a_A 86 MQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLES---GTHFPLFLLCLQQ-----LAKLQDREWL 157 (364)
T ss_dssp HHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGG---GTTTTHHHHHHHH-----HHHHSCHHHH
T ss_pred HHHHHHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcc---cchHHHHHHHHHH-----HHHhcCHHHH
Confidence 9999999999999999999999999999999999999999999986532 2222 222222 2233455556
Q ss_pred hhhhcCCC----------------------------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCc--ChHH
Q 005167 272 ERRWGGST----------------------------HITVEEVKKKIADLLREYVESGDAFEACRCIRELGVSF--FHHE 321 (710)
Q Consensus 272 ~~~Wgg~~----------------------------~~~~eelkkki~~lL~EYl~s~D~~EA~rcl~EL~~P~--fhhe 321 (710)
...|..++ -.|..++++.+..+|+| .-+.++-+..|++---|. =.++
T Consensus 158 ~~l~~~sgl~l~~FlPe~~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~---~~~~~~i~~wik~n~~~~~~~~~~ 234 (364)
T 3l6a_A 158 TELFQQSKVNMQKMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKL---DPSPQTIYKWIKDNISPKLHVDKG 234 (364)
T ss_dssp HHHHHHHTCCSGGGSCGGGCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHSCHHHHTCHH
T ss_pred HHHHHHcCCCHHHhCCccccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHc---CCChHHHHHHHHHhCCcccCCCHH
Confidence 66664111 11224555555555543 356677788887764332 3467
Q ss_pred HHHHHHHHHhccC----C------------ch----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHhhcccccccc
Q 005167 322 VVKRALVLAMEIR----T------------AE----------PLILKLLKEAAEEGLISSSQMAKGFARLEESLDDLALD 375 (710)
Q Consensus 322 lV~~ai~~alE~~----~------------~~----------~~i~~LL~~L~~~~~is~~Q~~~Gf~rv~e~ldDi~LD 375 (710)
||+...+..|+.- + .. .....||+..+.+.-=..-++..|++++... .+
T Consensus 235 fir~L~t~v~~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~-----~~ 309 (364)
T 3l6a_A 235 FVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYN-----SN 309 (364)
T ss_dssp HHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TT
T ss_pred HHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh-----cc
Confidence 7665555444310 0 01 1223344444433110134556677776643 24
Q ss_pred ccccHHHHHHHHHHHHHcCCCChhhhhhhccCCCccccchhHHHHHHHHHHHH
Q 005167 376 IPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTII 428 (710)
Q Consensus 376 vP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~~~~~~s~ee~kk~~~~il 428 (710)
-| ...|..++...+..++|+.+-+..=.+.+. .+.+....+.+.+++.|
T Consensus 310 ~~--~~~l~~il~~LYd~DileEe~il~W~~~~~--~~~~~k~~~~~~~~~Fi 358 (364)
T 3l6a_A 310 FP--KGMLLRFFVHFYDMEIIEEEAFLAWKEDIT--QEFPGKGKALFQVNQWL 358 (364)
T ss_dssp CC--TTHHHHHHHHHHHTTSSCHHHHHHHHHCCC--CSSTTHHHHHHHHHHHH
T ss_pred cc--HHHHHHHHHHHHHhhhhhhHHHHHHHhcCC--cccchHHHHHHHHHHHH
Confidence 44 345677888889999999766544333321 12234455777777654
No 12
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.94 E-value=1.1e-27 Score=258.05 Aligned_cols=164 Identities=23% Similarity=0.295 Sum_probs=143.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCChHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh-CCCCHHH
Q 005167 115 ISDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGSSEYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYA-DVISPDQ 193 (710)
Q Consensus 115 ~~~s~ee~~k~v~~ii~EYf~~~D~~Ea~~~lkEL~~p~~~~~~v~~~V~~aLDr~~~eREl~s~LLs~L~~-~vls~~~ 193 (710)
+++|+++++|+++.+|+|||++||++||++|++||+.|.|+|.||+++|+++|||++.+||++++||++|+. +++|++|
T Consensus 3 ~~~s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~ 82 (339)
T 1ug3_A 3 AALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQ 82 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999999996 9999999
Q ss_pred HHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHhcCCCCh-hhHhhhhhcCCCCchHHHHHHHHHhhhccCCCchhHHh
Q 005167 194 IRDGFVILLESADDLAVDILDAVDILALFVARAVVDDILPP-AFLTRAKKTLPAASKGFQVIQTAEKSYLSAPHHAELVE 272 (710)
Q Consensus 194 i~~Gf~~lL~~l~DL~lDiP~a~~~la~fiARaV~D~ilp~-~~l~~~~~~~~~~~~g~~~l~~a~~~lLs~~~~~~~l~ 272 (710)
|.+||.++++.++|+.+|+|+||+++|.|++|+|.+|++|+ .++......+..+..+...+..+- ..+...+|.+++.
T Consensus 83 ~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl-~~l~~~~g~~~l~ 161 (339)
T 1ug3_A 83 YYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEIL-GLLCKSMGPKKVG 161 (339)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHH-HHHHHHHCHHHHH
T ss_pred HHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHH-HHHHHHcCHHHHH
Confidence 99999999999999999999999999999999999999999 444444333222335555555553 3556778999999
Q ss_pred hhhcCCC
Q 005167 273 RRWGGST 279 (710)
Q Consensus 273 ~~Wgg~~ 279 (710)
++|+.++
T Consensus 162 ~~~~~s~ 168 (339)
T 1ug3_A 162 TLWREAG 168 (339)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 9999443
No 13
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=244.63 Aligned_cols=265 Identities=18% Similarity=0.220 Sum_probs=189.3
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhc-cCChHHH
Q 005167 415 EKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPE-FNPIFLKKVITLAMDRKNREKEMASVLLSALHIE-IFSTEDI 492 (710)
Q Consensus 415 ~s~ee~kk~~~~il~EYf~~~D~~Ev~~~l~el~~p~-~~~~~v~~~i~~alDrk~~eREl~s~LLs~L~~~-~ls~~~i 492 (710)
-+.+|+.|++++||+|||+++|++||+.|++||+.|. |++.||+++|++||||++.+||++++||++|+.+ ++|++||
T Consensus 6 ~~~~~~~k~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~ 85 (364)
T 3l6a_A 6 HSKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNF 85 (364)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 3679999999999999999999999999999999996 9999999999999999999999999999999985 9999999
Q ss_pred HHHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHhccCCchhhhHhhccCCCCCcHHHHHHHHHHHHhcccccccccccc
Q 005167 493 VNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLRCW 572 (710)
Q Consensus 493 ~~Gf~~lL~~l~Dl~lDiP~a~~~La~fiARaV~Dd~l~p~~l~~~~~~~~~~~~g~~~l~~A~~lL~~~h~~~rl~~~W 572 (710)
.+||.+++++++|+++|+|+|+++||.|+||+|.|+++||+++.++...-........+++ .+....|..++...|
T Consensus 86 ~~Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~----~~~k~~G~~~l~~l~ 161 (364)
T 3l6a_A 86 MQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQ----QLAKLQDREWLTELF 161 (364)
T ss_dssp HHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHH----HHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHH----HHHHhcCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987653111112223332 233334455555555
Q ss_pred cCCC------------------------Ccc----hHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCC--CcHHHHHH
Q 005167 573 GGGT------------------------GWA----VEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPF--FNHEVVKK 622 (710)
Q Consensus 573 g~~~------------------------g~~----~~~lk~ki~~ll~EY~~s~D~~EA~rCv~eL~~p~--fhhe~Vk~ 622 (710)
-.+| |++ ..++++.+..+|+| .-+.+|-...|++--.+. -.++||+-
T Consensus 162 ~~sgl~l~~FlPe~~~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~---~~~~~~i~~wik~n~~~~~~~~~~fir~ 238 (364)
T 3l6a_A 162 QQSKVNMQKMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKL---DPSPQTIYKWIKDNISPKLHVDKGFVNI 238 (364)
T ss_dssp HHHTCCSGGGSCGGGCSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHSCHHHHTCHHHHHH
T ss_pred HHcCCCHHHhCCccccchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHc---CCChHHHHHHHHHhCCcccCCCHHHHHH
Confidence 3222 221 24555555555544 345677788888775443 35677775
Q ss_pred HHHHHhccC-------------------ch---------HHHHHHHHHHHcCCCCHHHHHhHHHHHhhccchhhccccch
Q 005167 623 ALVMAMEKK-------------------ND---------RMLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNA 674 (710)
Q Consensus 623 al~~alE~~-------------------~~---------~~~~LL~~l~~~~~it~~q~~~Gf~rv~~~ldDi~lDvP~A 674 (710)
.....|+.. .+ .-..||+....+.-=..-++..|++++...+ +-|.
T Consensus 239 L~t~v~~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~-----~~~~- 312 (364)
T 3l6a_A 239 LMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNS-----NFPK- 312 (364)
T ss_dssp HHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCCT-
T ss_pred HHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc-----cccH-
Confidence 554444311 01 0134444443321101334566777765432 3343
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 005167 675 KEKFTFYVEYARKKGWLLP 693 (710)
Q Consensus 675 ~~~l~~~v~~~~~~g~l~~ 693 (710)
..|..++...++..+|+.
T Consensus 313 -~~l~~il~~LYd~DileE 330 (364)
T 3l6a_A 313 -GMLLRFFVHFYDMEIIEE 330 (364)
T ss_dssp -THHHHHHHHHHHTTSSCH
T ss_pred -HHHHHHHHHHHHhhhhhh
Confidence 445667778899999887
No 14
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.93 E-value=1.9e-26 Score=248.30 Aligned_cols=273 Identities=16% Similarity=0.247 Sum_probs=200.8
Q ss_pred cchhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhc-cCChHH
Q 005167 413 EDEKVKRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVLLSALHIE-IFSTED 491 (710)
Q Consensus 413 ~~~s~ee~kk~~~~il~EYf~~~D~~Ev~~~l~el~~p~~~~~~v~~~i~~alDrk~~eREl~s~LLs~L~~~-~ls~~~ 491 (710)
..+|+++++++++++|+|||++||++|+++|++||+.|.|+|.||+++|+++|||++.+||++++||++|+.+ ++|++|
T Consensus 3 ~~~s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~ 82 (339)
T 1ug3_A 3 AALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQ 82 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999975 999999
Q ss_pred HHHHHHHHHhhhhhhhhchhchHHHHHHHHHHHHHhccCCc-hhhhHhhccCCCCCcHHHHHHHHHHHHhcccccccccc
Q 005167 492 IVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAP-LNLEEISSKLPPNCSGSETVRVARSLIAARHAGERLLR 570 (710)
Q Consensus 492 i~~Gf~~lL~~l~Dl~lDiP~a~~~La~fiARaV~Dd~l~p-~~l~~~~~~~~~~~~g~~~l~~A~~lL~~~h~~~rl~~ 570 (710)
|.+||.+++++++|+.+|+|+++++||.|+||+|.++++|+ .++......+..++.+...+..+-..+...+|..|+.+
T Consensus 83 ~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~~ 162 (339)
T 1ug3_A 83 YYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLCKSMGPKKVGT 162 (339)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999999999999999999999999999999999 55555554444455677888888888888999999999
Q ss_pred cccCCCC-c----c----hHH-----------------------HHHHHHHHHHHHHh-cCCHHHHHHHHHhhCCCC--C
Q 005167 571 CWGGGTG-W----A----VED-----------------------AKDKIMKLLEEYES-GGVVSEACQCIRDLGMPF--F 615 (710)
Q Consensus 571 ~Wg~~~g-~----~----~~~-----------------------lk~ki~~ll~EY~~-s~D~~EA~rCv~eL~~p~--f 615 (710)
+|+.++- | + +++ ..+++..-|.+.+. .-..++...-|++.-.+. -
T Consensus 163 ~~~~s~l~l~~f~P~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~i~~~~~~~~~~ 242 (339)
T 1ug3_A 163 LWREAGLSWKEFLPEGQDIGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIV 242 (339)
T ss_dssp HHHHTTCCGGGTSCTTCCHHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCHHHHT
T ss_pred HHHHcCCCHHHhCCCchhHHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhcCChhhCC
Confidence 9997651 0 1 000 11233333444443 345677777777774432 2
Q ss_pred cHHHHHHHHHHHhcc----Cc----h-H----HHHHHHHHHHcCCCCHHHHHhHHHHHhhccchhhccccchHHHHHHHH
Q 005167 616 NHEVVKKALVMAMEK----KN----D-R----MLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFTFYV 682 (710)
Q Consensus 616 hhe~Vk~al~~alE~----~~----~-~----~~~LL~~l~~~~~it~~q~~~Gf~rv~~~ldDi~lDvP~A~~~l~~~v 682 (710)
.|+||+-.+...|+. .+ + . ...||+.....+ ..|+ ..+-.+.+...+..+-...|..++
T Consensus 243 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~pll~~~~~~~---~~ql-----~~L~alQ~~~~~~~~~~~~l~~~~ 314 (339)
T 1ug3_A 243 SNTLVRALMTAVCYSAIIFETPLRVDVAVLKARAKLLQKYLCDE---QKEL-----QALYALQALVVTLEQPPNLLRMFF 314 (339)
T ss_dssp CHHHHHHHHHHHHHHTEECSSSCEECHHHHHHHHHHHHHHCCSH---HHHH-----HHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHcCCc---HHHH-----HHHHHHHHHHHhccChHHHHHHHH
Confidence 566666554444443 11 1 1 123333333111 1221 112223333334444467788888
Q ss_pred HHHHHcCCCCC
Q 005167 683 EYARKKGWLLP 693 (710)
Q Consensus 683 ~~~~~~g~l~~ 693 (710)
...++..+|+.
T Consensus 315 ~~LYd~dVi~E 325 (339)
T 1ug3_A 315 DALYDEDVVKE 325 (339)
T ss_dssp HHHHHTTSSCH
T ss_pred HHHhCcchhhH
Confidence 88888888876
No 15
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=73.35 E-value=18 Score=35.66 Aligned_cols=81 Identities=23% Similarity=0.296 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhhCCCCCcHHHHHHHHHHHhccCchHHHHHHHHHHH------cCCCCHHHHH
Q 005167 581 EDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFS------EGLITTNQMT 654 (710)
Q Consensus 581 ~~lk~ki~~ll~EY~~s~D~~EA~rCv~eL~~p~fhhe~Vk~al~~alE~~~~~~~~LL~~l~~------~~~it~~q~~ 654 (710)
+++...+..+..||-.... .|| ++++.+ |++.-+|+.+.. ..-|+.+|+.
T Consensus 113 ~~~~~e~~~Lw~EyE~~~t-~Ea-~~vK~~----------------------Dkl~~~lqa~~~~g~~w~~~gv~~~q~~ 168 (200)
T 3kh1_A 113 PDQAAEYSALWQEYEARET-ADA-RFADAL----------------------DRLQPLLHNFETEGGTWKPHGVTRAKVD 168 (200)
T ss_dssp HHHHHHHHHHHHHHHHTCS-HHH-HHHHHH----------------------HHHHHHHHHHHTTSTTTTTTTCBHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCC-HHH-HHHHHH----------------------HHHHHHHHHHHcCCCCccccCccHHHHH
Confidence 6788899999999975432 232 333333 677777777766 3568999999
Q ss_pred hHHHHHhhccchhhccccchHHHHHHHHHHHHHcCCCC
Q 005167 655 KGFTRIKDGLDDLALDIPNAKEKFTFYVEYARKKGWLL 692 (710)
Q Consensus 655 ~Gf~rv~~~ldDi~lDvP~A~~~l~~~v~~~~~~g~l~ 692 (710)
+.-.++.+ ..|..++++..+++.+++.|||.
T Consensus 169 ~~~~~i~~-------~~~~lw~~~~~~~~~~~~~g~~~ 199 (200)
T 3kh1_A 169 KLLPRIEA-------GSKRLGAYARALVDEAVRRGYLA 199 (200)
T ss_dssp HHHHHHHH-------HCHHHHHHHHHHHHHHHHHTSSB
T ss_pred HHhHHHhh-------cCHHHHHHHHHHHHHHHHcCCCC
Confidence 87555544 46999999999999999999985
No 16
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=63.78 E-value=1.4e+02 Score=32.83 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhC---C-CcChHHHHHHHHHHHhccC---------CchHHHHHHHHHHHHcCCCCHH
Q 005167 290 IADLLREYVESGDAFEACRCIRELG---V-SFFHHEVVKRALVLAMEIR---------TAEPLILKLLKEAAEEGLISSS 356 (710)
Q Consensus 290 i~~lL~EYl~s~D~~EA~rcl~EL~---~-P~fhhelV~~ai~~alE~~---------~~~~~i~~LL~~L~~~~~is~~ 356 (710)
.+.+|+-|...||+++|.+.++++. + |. .+.|.++..+.-+. ...+....|+..+...|+....
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 4667888999999999999998873 2 33 35566666554321 0123456788888887765432
Q ss_pred ----HHHHHHHHHhhccccccccccccHHHHHHHHHHHHHcCCCChhhhhhhccCCCccccchhHHHHHHHHHHHHHHhh
Q 005167 357 ----QMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIHEYF 432 (710)
Q Consensus 357 ----Q~~~Gf~rv~e~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~~~~~~s~ee~kk~~~~il~EYf 432 (710)
.+..|+.+. . ++-.|..+|.++ ...|+.| +. .....+|.-|.
T Consensus 106 ~tyn~lI~~~~~~----g----~~~~A~~l~~~M----~~~g~~P------------------d~----~tyn~lI~~~~ 151 (501)
T 4g26_A 106 ATFTNGARLAVAK----D----DPEMAFDMVKQM----KAFGIQP------------------RL----RSYGPALFGFC 151 (501)
T ss_dssp HHHHHHHHHHHHH----T----CHHHHHHHHHHH----HHTTCCC------------------CH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----C----CHHHHHHHHHHH----HHcCCCC------------------cc----ceehHHHHHHH
Confidence 233333322 1 122333333332 2233321 11 13577899999
Q ss_pred cCCCHHHHHHHHHhcCCCCChHHH--HHHHHHHHhcCChhHHHHHHHHHHHHHhc
Q 005167 433 LSDDIPELIRSLEDLGAPEFNPIF--LKKVITLAMDRKNREKEMASVLLSALHIE 485 (710)
Q Consensus 433 ~~~D~~Ev~~~l~el~~p~~~~~~--v~~~i~~alDrk~~eREl~s~LLs~L~~~ 485 (710)
..|+.+++...++++..-...|.. ...+|...... ..-+-+-.+|..+...
T Consensus 152 ~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~--g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 152 RKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT--KNADKVYKTLQRLRDL 204 (501)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHh
Confidence 999999999999987643332222 12233322222 3345577788888764
No 17
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=47.93 E-value=28 Score=34.26 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcChHHHHHHHHHHHhccCCchHHHHHHHHHHHH------cCCCCHHH
Q 005167 284 EEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAE------EGLISSSQ 357 (710)
Q Consensus 284 eelkkki~~lL~EYl~s~D~~EA~rcl~EL~~P~fhhelV~~ai~~alE~~~~~~~i~~LL~~L~~------~~~is~~Q 357 (710)
+++...+..+..||-.. +..|| + ||+ + -+.+..+|+.+.. ..-|+.+|
T Consensus 113 ~~~~~e~~~Lw~EyE~~-~t~Ea-~-------------~vK-----~------~Dkl~~~lqa~~~~g~~w~~~gv~~~q 166 (200)
T 3kh1_A 113 PDQAAEYSALWQEYEAR-ETADA-R-------------FAD-----A------LDRLQPLLHNFETEGGTWKPHGVTRAK 166 (200)
T ss_dssp HHHHHHHHHHHHHHHHT-CSHHH-H-------------HHH-----H------HHHHHHHHHHHHTTSTTTTTTTCBHHH
T ss_pred hHHHHHHHHHHHHHHcC-CCHHH-H-------------HHH-----H------HHHHHHHHHHHHcCCCCccccCccHHH
Confidence 45677777888887542 33333 2 222 2 2345556665555 46789999
Q ss_pred HHHHHHHHhhccccccccccccHHHHHHHHHHHHHcCCCC
Q 005167 358 MAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLD 397 (710)
Q Consensus 358 ~~~Gf~rv~e~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~ 397 (710)
+.+.-.++-+ ..|..|+++..++..++..|||.
T Consensus 167 ~~~~~~~i~~-------~~~~lw~~~~~~~~~~~~~g~~~ 199 (200)
T 3kh1_A 167 VDKLLPRIEA-------GSKRLGAYARALVDEAVRRGYLA 199 (200)
T ss_dssp HHHHHHHHHH-------HCHHHHHHHHHHHHHHHHHTSSB
T ss_pred HHHHhHHHhh-------cCHHHHHHHHHHHHHHHHcCCCC
Confidence 9987555544 68999999999999999999984
No 18
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=44.38 E-value=68 Score=36.63 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHhcCC-CHHHHHHHHHhhCCCC--ChHHHHHHHHHHhcCCC-------hhhHHHHHHHHHHHHh-C
Q 005167 119 LDDYKKAVASIIEEYFSTG-DVEVAASDLRELGSSE--YHPYFIKRLVSMAMDRH-------DKEKEMASVLLSALYA-D 187 (710)
Q Consensus 119 ~ee~~k~v~~ii~EYf~~~-D~~Ea~~~lkEL~~p~--~~~~~v~~~V~~aLDr~-------~~eREl~s~LLs~L~~-~ 187 (710)
..+++++++...+.+|+.. .+++++..++.++.+. .-..+..++|..-+|-- .+|=..+++|+=.|.. +
T Consensus 444 ~~dIE~ean~yfqkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~ 523 (603)
T 4b8b_A 444 NNDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQ 523 (603)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHc
Confidence 4779999999999999987 5899999999998765 44556666666555532 3444449999999997 9
Q ss_pred CCCHHHHHHHHHHHHhhhhh
Q 005167 188 VISPDQIRDGFVILLESADD 207 (710)
Q Consensus 188 vls~~~i~~Gf~~lL~~l~D 207 (710)
+++.-.+.-|+..+++.+-+
T Consensus 524 Ll~~~~L~iALr~ILeAlrk 543 (603)
T 4b8b_A 524 LLRGFVLDVAFRIIMRFAKE 543 (603)
T ss_dssp SSCHHHHHHHHHHHHHHHTS
T ss_pred ccCcchHHHHHHHHHHHHhC
Confidence 99999999999999999987
No 19
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=37.66 E-value=64 Score=34.37 Aligned_cols=169 Identities=15% Similarity=0.141 Sum_probs=91.5
Q ss_pred cCCHHHHHHHHHHhC-----CCcChHHHHHH----HHHHHhccC--CchHHHHHHHHHHHHc-----CCCCHHHHHHHHH
Q 005167 300 SGDAFEACRCIRELG-----VSFFHHEVVKR----ALVLAMEIR--TAEPLILKLLKEAAEE-----GLISSSQMAKGFA 363 (710)
Q Consensus 300 s~D~~EA~rcl~EL~-----~P~fhhelV~~----ai~~alE~~--~~~~~i~~LL~~L~~~-----~~is~~Q~~~Gf~ 363 (710)
+++-.|-.+.+..|. =+.|-||||.+ .|...++.. +....++.-|..|..- |+++..++.+-+.
T Consensus 129 ~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~ly 208 (339)
T 3dad_A 129 SSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLY 208 (339)
T ss_dssp HCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHH
Confidence 444444444444443 25677888764 233334433 4455666667777666 7888888888888
Q ss_pred HHhhccccccccccccHHHHHHHHHHHHHc-CCCChhhhhhhccCCCcc---------ccchhHHHHHHHHHHHHHHhhc
Q 005167 364 RLEESLDDLALDIPSARNLFQSIVPVAISE-GWLDASFMKSLGEDGRVQ---------QEDEKVKRYKEEVVTIIHEYFL 433 (710)
Q Consensus 364 rv~e~ldDi~LDvP~A~~~l~~~v~~~~~~-g~l~~~~~~~~~~~~~~~---------~~~~s~ee~kk~~~~il~EYf~ 433 (710)
.++.+ .+ ..=+-.|-++|..||...-.. ..+-.++..-...+|.++ ..+-...|+.-.+.++|.--|.
T Consensus 209 slv~s-~~-~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~ 286 (339)
T 3dad_A 209 TLCAS-LS-RLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLA 286 (339)
T ss_dssp HGGGC-SC-HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHcC-cc-HHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHh
Confidence 87774 22 222444555566555543100 011111110011122220 1122345666677788887777
Q ss_pred CCC-HH---HHHHHHHhcCCCCChHHHHHHHHHHHhcCChhHHHHHHHH
Q 005167 434 SDD-IP---ELIRSLEDLGAPEFNPIFLKKVITLAMDRKNREKEMASVL 478 (710)
Q Consensus 434 ~~D-~~---Ev~~~l~el~~p~~~~~~v~~~i~~alDrk~~eREl~s~L 478 (710)
..+ .+ +++.++++++ +..+|...|.++..+.|+..+|
T Consensus 287 ~apd~d~~~di~d~Le~~g--------i~~~i~r~l~~~~~~~~l~~Ql 327 (339)
T 3dad_A 287 ALPDQDSFYDVTDALEQQG--------MEALVQRHLGTAGTDVDLRTQL 327 (339)
T ss_dssp HCSSHHHHHHHHHHHHHTT--------HHHHHHHHHSCTTSCHHHHHHH
T ss_pred cCCChhHHHHHHHHHHHcc--------HHHHHHHHHhccCCCHHHHHHH
Confidence 764 23 6666676665 3345555778887777877776
No 20
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=35.56 E-value=1.4e+02 Score=34.10 Aligned_cols=88 Identities=11% Similarity=0.228 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhhcCC-CHHHHHHHHHhcCCCC--ChHHHHHHHHHHHhcC-----ChhHHHH--HHHHHHHHHhc-c
Q 005167 418 KRYKEEVVTIIHEYFLSD-DIPELIRSLEDLGAPE--FNPIFLKKVITLAMDR-----KNREKEM--ASVLLSALHIE-I 486 (710)
Q Consensus 418 ee~kk~~~~il~EYf~~~-D~~Ev~~~l~el~~p~--~~~~~v~~~i~~alDr-----k~~eREl--~s~LLs~L~~~-~ 486 (710)
.+.+++++...+.+|+.. .+++++..|+.++... ....+..++|..=+|. +-.++|+ +++|+=.|..+ +
T Consensus 445 ~dIE~ean~yfqkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~L 524 (603)
T 4b8b_A 445 NDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQL 524 (603)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcc
Confidence 678999999999999998 7999999999998754 4555666666555543 2344455 99999999986 9
Q ss_pred CChHHHHHHHHHHHhhhhh
Q 005167 487 FSTEDIVNGFVMLLESAED 505 (710)
Q Consensus 487 ls~~~i~~Gf~~lL~~l~D 505 (710)
++.-.+.-|+..+++.+.+
T Consensus 525 l~~~~L~iALr~ILeAlrk 543 (603)
T 4b8b_A 525 LRGFVLDVAFRIIMRFAKE 543 (603)
T ss_dssp SCHHHHHHHHHHHHHHHTS
T ss_pred cCcchHHHHHHHHHHHHhC
Confidence 9999999999999999877
No 21
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=23.26 E-value=1.2e+02 Score=27.19 Aligned_cols=119 Identities=10% Similarity=0.132 Sum_probs=65.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhc-CCHHHHHH-HHHHhCCCcChHHHHHHHHHHHhccC--CchHHHHHHHHHHHHcCCCC
Q 005167 279 THITVEEVKKKIADLLREYVES-GDAFEACR-CIRELGVSFFHHEVVKRALVLAMEIR--TAEPLILKLLKEAAEEGLIS 354 (710)
Q Consensus 279 ~~~~~eelkkki~~lL~EYl~s-~D~~EA~r-cl~EL~~P~fhhelV~~ai~~alE~~--~~~~~i~~LL~~L~~~~~is 354 (710)
..++.+.++++.+.|= .+ ..+..+.. |+.-- .++.++| .++...+.+. ..+=.++.|+.......-=.
T Consensus 2 ssf~~~~l~~~L~~L~----~s~~sI~~~s~w~l~~~---~~a~~iv-~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~ 73 (135)
T 4fu3_A 2 SSFSESALEKKLSELS----NSQQSVQTLSLWLIHHR---KHAGPIV-SVWHRELRKAKSNRKLTFLYLANDVIQNSKRK 73 (135)
T ss_dssp -CCCHHHHHHHHHHCC----SSTTHHHHHHHHHHHTG---GGHHHHH-HHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHcc----ccHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHhcccchhHHHHHHHHHHHHHHHhc
Confidence 4567777777776661 22 22334433 33321 2344444 4555555544 33335666666664322112
Q ss_pred HHHHHHHHHHHhhcc-cccc-ccccccHHHHHHHHHHHHHcCCCChhhhhhhc
Q 005167 355 SSQMAKGFARLEESL-DDLA-LDIPSARNLFQSIVPVAISEGWLDASFMKSLG 405 (710)
Q Consensus 355 ~~Q~~~Gf~rv~e~l-dDi~-LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~ 405 (710)
..++.+.|.+++-.+ .++. ..-|.-...+.+++.-.-+.++++++++..+.
T Consensus 74 ~~~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~r~vf~~~~i~~L~ 126 (135)
T 4fu3_A 74 GPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQQLK 126 (135)
T ss_dssp CSHHHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Confidence 346888888765432 1111 11255677788888888888999988877654
No 22
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=22.26 E-value=68 Score=28.43 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=38.1
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhC
Q 005167 273 RRWGGSTHITVEEVKKKIADLLREYVESGDAFEACRCIRELG 314 (710)
Q Consensus 273 ~~Wgg~~~~~~eelkkki~~lL~EYl~s~D~~EA~rcl~EL~ 314 (710)
+-|..-+++|.++.+++--.++++.+..-|..||...|.||+
T Consensus 63 ~AW~~l~gmS~eeA~~~YI~~v~~l~~~~~~~~~~~~~~~le 104 (106)
T 3fp5_A 63 DAWKSVEGTSKEVAYQKYVEKLLEILKKADTEESKKYIAEIE 104 (106)
T ss_dssp HHHHTTTTCCHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 568877889999999999999999999999999999999985
No 23
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=21.73 E-value=3.2e+02 Score=23.22 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCcChHHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCC-HHHHHHH
Q 005167 283 VEEVKKKIADLLREYVESGDAFEACRCIRELGVSFFHHEVVKRALVLAMEIRTAEPLILKLLKEAAEEGLIS-SSQMAKG 361 (710)
Q Consensus 283 ~eelkkki~~lL~EYl~s~D~~EA~rcl~EL~~P~fhhelV~~ai~~alE~~~~~~~i~~LL~~L~~~~~is-~~Q~~~G 361 (710)
.++++++-+.+|++|+.+++- ++.---+.+ =+ ..+|+....+-+..+=+.+..+=..+ ++++...
T Consensus 4 m~~~~~~Y~~iL~~yl~~~~E-~~Ly~~q~f---------s~----~~iek~i~PEeiV~iHk~~i~el~~~l~e~v~~S 69 (84)
T 1w53_A 4 REVIEQRYHQLLSRYIAELTE-TSLYQAQKF---------SR----KTIEHQIPPEEIISIHRKVLKELYPSLPEDVFHS 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHCCH-HHHHHHHHH---------HH----HHHHTTCCHHHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccH-HHHHHHHHh---------hH----HHHHcCCCHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 367899999999999999998 443322222 12 23444444556666666666665555 6677766
Q ss_pred HHHHhhc
Q 005167 362 FARLEES 368 (710)
Q Consensus 362 f~rv~e~ 368 (710)
|.=++|.
T Consensus 70 fd~L~Ev 76 (84)
T 1w53_A 70 LDFLIEV 76 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 24
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*
Probab=20.89 E-value=2.3e+02 Score=29.98 Aligned_cols=119 Identities=11% Similarity=0.113 Sum_probs=64.7
Q ss_pred cCCCCHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHcCCCChhhhhhhccCCCccccchhHHHHHHHHHHHHH
Q 005167 350 EGLISSSQMAKGFARLEESLDDLALDIPSARNLFQSIVPVAISEGWLDASFMKSLGEDGRVQQEDEKVKRYKEEVVTIIH 429 (710)
Q Consensus 350 ~~~is~~Q~~~Gf~rv~e~ldDi~LDvP~A~~~l~~~v~~~~~~g~l~~~~~~~~~~~~~~~~~~~s~ee~kk~~~~il~ 429 (710)
-|-+|.+|+.+||. ++..+.++ |+-+.....+..+..+-.. .||-+|....|+ -..+.+.+++++. +++
T Consensus 37 lGkLs~~qi~~~~~-vL~~i~~~-l~~~~~~~~l~~ls~~fyt--~IPh~fg~~~p~------~i~~~~~l~~k~~-lle 105 (350)
T 1efy_A 37 LGKLSKRQIQSAYS-ILNEVQQA-VSDGGSESQILDLSNRFYT--LIPHDFGMKKPP------LLSNLEYIQAKVQ-MLD 105 (350)
T ss_dssp GGGCCHHHHHHHHH-HHHHHHHH-HHTTCCHHHHHHHHHHHHH--HSCBCCCSSCCC------CSCSHHHHHHHHH-HHH
T ss_pred cccCCHHHHHHHHH-HHHHHHHH-HhcccchHHHHHHHHhHHh--hcCccccCCCCC------ccCCHHHHHHHHH-HHH
Confidence 47899999999987 55556665 3334455555555555444 444444322221 2345677777763 333
Q ss_pred HhhcCCCHHHHHHHHHhcCCCC-ChHHHHHHHH-----HHHhcCChhHHHHHHHHHHHHH
Q 005167 430 EYFLSDDIPELIRSLEDLGAPE-FNPIFLKKVI-----TLAMDRKNREKEMASVLLSALH 483 (710)
Q Consensus 430 EYf~~~D~~Ev~~~l~el~~p~-~~~~~v~~~i-----~~alDrk~~eREl~s~LLs~L~ 483 (710)
-- .|++.+...+++-.... -++.- .+.= ...|+++..|-.++...+..-+
T Consensus 106 ~L---~die~A~~l~~~~~~~~~~~pld-~~y~~L~~~l~~L~~~s~Ey~~I~~~~~~t~ 161 (350)
T 1efy_A 106 NL---LDIEVAYSLLRGGNEDGDKDPID-INYEKLRTDIKVVDKDSEEAKIIKQYVKNTH 161 (350)
T ss_dssp HH---HHHHHHHHHHHSCCCCSSSCHHH-HHHHHTCEEEEECCTTSHHHHHHHHHHHHTC
T ss_pred HH---HHHHHHHHHHhhcccCCCCChhH-HHHHHhCCEEEEcCCCChHHHHHHHHHhccc
Confidence 22 45555555555432111 12211 1111 2257888888888888777554
Done!