Query 005168
Match_columns 710
No_of_seqs 391 out of 4504
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 19:10:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.7E-58 5.9E-63 547.6 44.2 532 1-626 73-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.6E-54 7.8E-59 512.3 45.1 515 20-627 68-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.8E-43 6.1E-48 354.3 6.7 435 130-646 54-493 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.4E-41 5.2E-46 340.5 7.0 304 179-573 148-451 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.6E-38 5.7E-43 305.4 -10.9 476 2-598 50-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.3E-36 2.7E-41 293.8 -13.2 483 44-622 43-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 6.1E-34 1.3E-38 302.4 -4.2 492 2-595 3-510 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 2.6E-33 5.5E-38 284.4 -2.5 350 170-598 22-375 (1255)
9 KOG0444 Cytoskeletal regulator 100.0 7.3E-32 1.6E-36 273.8 -2.8 372 178-627 5-380 (1255)
10 KOG0618 Serine/threonine phosp 100.0 3.2E-31 6.9E-36 281.8 0.8 406 2-460 26-466 (1081)
11 KOG4237 Extracellular matrix p 99.9 1E-28 2.2E-33 239.0 -2.1 308 255-620 68-380 (498)
12 KOG4237 Extracellular matrix p 99.9 5E-26 1.1E-30 220.5 -1.1 360 180-571 67-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 4.8E-21 1E-25 228.5 26.3 300 230-597 590-905 (1153)
14 PLN03210 Resistant to P. syrin 99.9 2.3E-20 5E-25 222.7 28.2 336 151-573 554-905 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 2.9E-21 6.3E-26 213.4 17.1 263 231-605 203-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 7.4E-20 1.6E-24 202.3 18.3 264 181-581 202-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 7.3E-19 1.6E-23 196.0 14.2 120 230-377 179-298 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 4.9E-18 1.1E-22 189.4 13.4 35 422-459 346-380 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.5E-18 3.2E-23 180.3 0.6 61 537-597 250-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-17 2.4E-22 173.7 -0.4 266 258-600 2-293 (319)
21 KOG0617 Ras suppressor protein 99.6 6.8E-18 1.5E-22 145.6 -5.3 182 361-603 32-217 (264)
22 KOG0617 Ras suppressor protein 99.6 2.1E-17 4.5E-22 142.6 -3.7 183 378-622 26-212 (264)
23 PLN03150 hypothetical protein; 99.4 4.7E-13 1E-17 149.4 12.2 118 514-631 419-538 (623)
24 KOG1259 Nischarin, modulator o 99.2 3.5E-12 7.6E-17 120.4 0.9 132 421-601 283-415 (490)
25 PF14580 LRR_9: Leucine-rich r 99.1 6.3E-11 1.4E-15 108.1 5.6 130 226-370 16-148 (175)
26 KOG0532 Leucine-rich repeat (L 99.1 3.8E-12 8.3E-17 130.4 -3.1 78 514-595 190-270 (722)
27 COG4886 Leucine-rich repeat (L 99.0 4E-10 8.7E-15 120.5 8.9 59 255-316 117-176 (394)
28 KOG0532 Leucine-rich repeat (L 99.0 1.5E-11 3.2E-16 126.1 -2.6 194 228-456 74-270 (722)
29 PF14580 LRR_9: Leucine-rich r 99.0 1.7E-10 3.7E-15 105.2 3.5 115 4-141 4-126 (175)
30 COG4886 Leucine-rich repeat (L 99.0 4.6E-10 9.9E-15 120.0 7.2 136 416-600 157-292 (394)
31 KOG3207 Beta-tubulin folding c 99.0 5.2E-11 1.1E-15 118.6 -0.1 41 420-460 299-340 (505)
32 PLN03150 hypothetical protein; 99.0 1E-09 2.3E-14 122.7 8.4 114 447-603 419-533 (623)
33 KOG1909 Ran GTPase-activating 99.0 6.6E-11 1.4E-15 114.7 -1.1 204 152-377 27-256 (382)
34 KOG3207 Beta-tubulin folding c 99.0 1.4E-10 3.1E-15 115.5 1.1 212 60-291 119-339 (505)
35 KOG1259 Nischarin, modulator o 98.9 1.6E-10 3.6E-15 109.3 0.4 121 1-143 288-414 (490)
36 KOG1909 Ran GTPase-activating 98.9 3.7E-10 8.1E-15 109.6 2.6 207 82-316 87-311 (382)
37 PF13855 LRR_8: Leucine rich r 98.9 7.1E-10 1.5E-14 83.1 3.1 59 538-596 2-60 (61)
38 PF13855 LRR_8: Leucine rich r 98.9 6.3E-10 1.4E-14 83.3 2.8 61 513-573 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.9 3.7E-10 7.9E-15 120.9 0.0 247 253-603 71-323 (414)
40 KOG4658 Apoptotic ATPase [Sign 98.7 3.5E-08 7.5E-13 112.9 7.4 57 512-568 769-826 (889)
41 KOG4658 Apoptotic ATPase [Sign 98.6 3.6E-08 7.8E-13 112.8 5.2 127 230-372 524-652 (889)
42 KOG0531 Protein phosphatase 1, 98.6 7.2E-09 1.6E-13 110.9 -0.9 218 301-598 70-290 (414)
43 KOG1859 Leucine-rich repeat pr 98.5 1.7E-09 3.7E-14 114.2 -8.3 42 416-459 181-222 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.2 3E-08 6.5E-13 94.2 -5.4 154 82-240 205-374 (419)
45 KOG2120 SCF ubiquitin ligase, 98.2 4.4E-08 9.6E-13 93.1 -4.4 175 87-266 185-375 (419)
46 KOG2982 Uncharacterized conser 98.2 2.8E-07 6E-12 87.8 0.5 79 45-138 70-156 (418)
47 KOG1859 Leucine-rich repeat pr 98.2 3E-08 6.4E-13 105.0 -7.0 93 3-102 170-269 (1096)
48 KOG2982 Uncharacterized conser 98.1 9.1E-07 2E-11 84.4 1.8 204 88-317 46-263 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.1 4.1E-07 8.9E-12 85.5 -1.0 94 276-376 155-256 (388)
50 KOG4579 Leucine-rich repeat (L 98.1 1.6E-07 3.5E-12 79.0 -3.5 135 423-604 28-165 (177)
51 KOG1644 U2-associated snRNP A' 98.0 6.7E-06 1.4E-10 74.4 5.3 128 232-374 22-152 (233)
52 KOG4579 Leucine-rich repeat (L 97.9 6.5E-07 1.4E-11 75.4 -2.8 83 230-316 54-136 (177)
53 PF12799 LRR_4: Leucine Rich r 97.9 8.9E-06 1.9E-10 55.5 3.3 41 21-63 1-41 (44)
54 KOG4341 F-box protein containi 97.9 5.6E-07 1.2E-11 89.9 -4.0 77 21-97 138-226 (483)
55 COG5238 RNA1 Ran GTPase-activa 97.9 5.7E-06 1.2E-10 78.1 1.7 161 82-243 87-286 (388)
56 PF13306 LRR_5: Leucine rich r 97.8 4E-05 8.8E-10 67.4 6.5 102 202-310 9-110 (129)
57 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.1E-10 53.9 2.8 36 538-574 2-37 (44)
58 KOG1644 U2-associated snRNP A' 97.7 4.8E-05 1E-09 69.0 5.5 61 82-142 59-127 (233)
59 PF13306 LRR_5: Leucine rich r 97.7 6.7E-05 1.5E-09 66.0 6.2 83 224-311 7-89 (129)
60 PRK15386 type III secretion pr 97.5 0.00034 7.4E-09 72.2 8.9 13 363-375 157-169 (426)
61 KOG4341 F-box protein containi 97.5 5.7E-06 1.2E-10 82.9 -3.8 137 203-349 292-437 (483)
62 KOG3665 ZYG-1-like serine/thre 97.5 3.2E-05 6.9E-10 86.7 0.9 145 62-211 122-281 (699)
63 KOG3665 ZYG-1-like serine/thre 97.4 5.1E-05 1.1E-09 85.1 1.6 133 180-316 122-263 (699)
64 PRK15386 type III secretion pr 97.3 0.00095 2.1E-08 69.0 9.0 32 423-456 73-104 (426)
65 KOG2739 Leucine-rich acidic nu 96.6 0.0013 2.7E-08 62.7 2.3 76 60-136 63-151 (260)
66 KOG2123 Uncharacterized conser 96.4 0.0002 4.3E-09 68.2 -4.0 78 231-314 21-99 (388)
67 KOG2739 Leucine-rich acidic nu 96.4 0.0015 3.1E-08 62.3 1.4 60 82-141 60-129 (260)
68 KOG2123 Uncharacterized conser 95.6 0.0007 1.5E-08 64.6 -4.2 84 512-599 18-102 (388)
69 KOG1947 Leucine rich repeat pr 95.3 0.0044 9.5E-08 68.3 -0.4 143 125-280 240-389 (482)
70 TIGR00864 PCC polycystin catio 94.6 0.025 5.5E-07 70.8 3.5 75 567-647 1-76 (2740)
71 KOG1947 Leucine rich repeat pr 94.2 0.0089 1.9E-07 65.8 -1.4 186 178-364 186-389 (482)
72 PF00560 LRR_1: Leucine Rich R 94.1 0.018 4E-07 32.5 0.5 12 563-574 2-13 (22)
73 PF00560 LRR_1: Leucine Rich R 93.7 0.028 6E-07 31.7 0.7 21 538-559 1-21 (22)
74 smart00369 LRR_TYP Leucine-ric 93.0 0.086 1.9E-06 31.1 2.1 22 537-558 2-23 (26)
75 smart00370 LRR Leucine-rich re 93.0 0.086 1.9E-06 31.1 2.1 22 537-558 2-23 (26)
76 smart00369 LRR_TYP Leucine-ric 92.5 0.11 2.5E-06 30.6 2.2 23 277-300 1-23 (26)
77 smart00370 LRR Leucine-rich re 92.5 0.11 2.5E-06 30.6 2.2 23 277-300 1-23 (26)
78 KOG4308 LRR-containing protein 91.4 0.0018 3.8E-08 69.7 -11.4 60 515-574 235-303 (478)
79 PF13504 LRR_7: Leucine rich r 91.0 0.14 3E-06 26.8 1.2 13 279-291 2-14 (17)
80 KOG4308 LRR-containing protein 88.9 0.004 8.7E-08 67.0 -11.3 167 82-268 110-304 (478)
81 KOG0473 Leucine-rich repeat pr 86.8 0.018 3.8E-07 53.8 -6.7 92 4-99 25-123 (326)
82 smart00365 LRR_SD22 Leucine-ri 84.6 0.91 2E-05 26.8 2.1 17 46-62 2-18 (26)
83 KOG0473 Leucine-rich repeat pr 84.0 0.052 1.1E-06 50.8 -5.1 84 512-598 41-124 (326)
84 KOG3864 Uncharacterized conser 81.5 0.41 8.8E-06 44.2 -0.4 76 2-96 106-185 (221)
85 KOG3864 Uncharacterized conser 77.8 0.33 7.2E-06 44.8 -2.1 60 255-314 102-162 (221)
86 PF13516 LRR_6: Leucine Rich r 71.3 1.1 2.3E-05 25.7 -0.4 13 339-351 3-15 (24)
87 PF08693 SKG6: Transmembrane a 65.4 7.5 0.00016 25.6 2.5 11 657-667 13-23 (40)
88 smart00364 LRR_BAC Leucine-ric 65.0 4.5 9.7E-05 23.8 1.3 18 561-579 2-19 (26)
89 PTZ00382 Variant-specific surf 64.6 12 0.00027 30.4 4.4 20 656-675 68-87 (96)
90 KOG3763 mRNA export factor TAP 63.3 3.6 7.9E-05 44.1 1.3 13 587-599 272-284 (585)
91 KOG4242 Predicted myosin-I-bin 59.3 39 0.00084 35.9 7.8 61 230-290 215-280 (553)
92 TIGR00864 PCC polycystin catio 59.1 7.1 0.00015 50.3 3.0 33 543-575 1-33 (2740)
93 smart00368 LRR_RI Leucine rich 56.9 8.4 0.00018 23.1 1.6 13 562-574 3-15 (28)
94 KOG3763 mRNA export factor TAP 47.7 13 0.00028 40.1 2.4 12 253-264 243-254 (585)
95 KOG4242 Predicted myosin-I-bin 46.0 91 0.002 33.3 8.0 15 228-242 439-453 (553)
96 PF04478 Mid2: Mid2 like cell 44.2 9.9 0.00022 33.4 0.7 16 655-670 50-65 (154)
97 PF15050 SCIMP: SCIMP protein 43.7 11 0.00023 31.3 0.8 28 656-683 9-36 (133)
98 PF02009 Rifin_STEVOR: Rifin/s 40.6 19 0.00041 36.2 2.2 18 665-682 266-283 (299)
99 PF08374 Protocadherin: Protoc 37.2 29 0.00064 32.4 2.7 22 655-676 39-60 (221)
100 PF08114 PMP1_2: ATPase proteo 36.4 69 0.0015 21.1 3.4 8 676-683 29-36 (43)
101 PHA03099 epidermal growth fact 35.9 12 0.00026 31.6 -0.0 24 663-686 109-132 (139)
102 PF01102 Glycophorin_A: Glycop 33.5 15 0.00033 31.3 0.2 13 657-669 67-79 (122)
103 smart00367 LRR_CC Leucine-rich 29.8 38 0.00083 19.6 1.5 13 20-32 1-13 (26)
104 PF15102 TMEM154: TMEM154 prot 24.2 64 0.0014 28.3 2.4 7 674-680 79-85 (146)
105 PTZ00046 rifin; Provisional 24.0 29 0.00062 35.6 0.3 23 663-685 323-345 (358)
106 TIGR01477 RIFIN variant surfac 23.1 32 0.00068 35.2 0.4 22 664-685 319-340 (353)
107 PF12273 RCR: Chitin synthesis 21.1 96 0.0021 26.9 3.0 14 670-683 12-25 (130)
108 PF15069 FAM163: FAM163 family 21.1 1.2E+02 0.0027 26.5 3.5 19 669-687 17-35 (143)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.7e-58 Score=547.57 Aligned_cols=532 Identities=31% Similarity=0.449 Sum_probs=444.7
Q ss_pred CeecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC------CcccccEEecCCCcc
Q 005168 1 MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID------KFVVSKELYLDDTGF 74 (710)
Q Consensus 1 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~------~l~~l~~L~L~~~~~ 74 (710)
.|||++|.|++..+.+|.++++|++|+|++|++.+.++.+.|..+++|++|+|++|.++ .+++|++|+|++|.+
T Consensus 73 ~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~ 152 (968)
T PLN00113 73 SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNML 152 (968)
T ss_pred EEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcc
Confidence 37889999999888899999999999999999887788677778999999999999875 577888888888888
Q ss_pred eeecCHHhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCC
Q 005168 75 KGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPN 154 (710)
Q Consensus 75 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~ 154 (710)
.+.+|. .+.++++|++|++++|.+.+. .+ ..+.++++|+.|++++|.+....+.. +...
T Consensus 153 ~~~~p~-~~~~l~~L~~L~L~~n~l~~~----------------~p-~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~l 211 (968)
T PLN00113 153 SGEIPN-DIGSFSSLKVLDLGGNVLVGK----------------IP-NSLTNLTSLEFLTLASNQLVGQIPRE---LGQM 211 (968)
T ss_pred cccCCh-HHhcCCCCCEEECccCccccc----------------CC-hhhhhCcCCCeeeccCCCCcCcCChH---HcCc
Confidence 877777 788888888888888776532 22 34566777777777777765554433 2344
Q ss_pred CcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEE
Q 005168 155 FQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGIL 234 (710)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 234 (710)
.+|++|++ .++.+.+.+|..+..+++|++|++++|.+.+..|..+ .++++|+.|++++|.+.+..|..+..+++|++|
T Consensus 212 ~~L~~L~L-~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 289 (968)
T PLN00113 212 KSLKWIYL-GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289 (968)
T ss_pred CCccEEEC-cCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence 57777777 6677777788888888889999998888888888776 788889999999888888888888888889999
Q ss_pred EcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCC
Q 005168 235 DISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNS 314 (710)
Q Consensus 235 ~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~ 314 (710)
++++|.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|.... .+++|+.|++++|.
T Consensus 290 ~Ls~n~l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 290 DLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNN 367 (968)
T ss_pred ECcCCeeccCCChhHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh-CCCCCcEEECCCCe
Confidence 99988888777776654 78899999999988888888888889999999999988867776554 68888888887776
Q ss_pred CcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEEcc
Q 005168 315 LKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLS 393 (710)
Q Consensus 315 l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~l~ 393 (710)
+.. ..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..+..+. ++.|+.++++
T Consensus 368 l~~-----------~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 436 (968)
T PLN00113 368 LTG-----------EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436 (968)
T ss_pred eEe-----------eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECc
Confidence 553 5677888888899999999998888888888899999999999998887777666 7888888766
Q ss_pred CccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccc
Q 005168 394 KNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYE 473 (710)
Q Consensus 394 ~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 473 (710)
+|.+.+ ..|..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++++..|..+.+
T Consensus 437 ~N~l~~-------------~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~----- 497 (968)
T PLN00113 437 NNNLQG-------------RINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS----- 497 (968)
T ss_pred CCcccC-------------ccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh-----
Confidence 665543 666777788999999999999998888765 4689999999999999888887766
Q ss_pred cccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCC
Q 005168 474 SYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI 553 (710)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 553 (710)
++.|+.|++++|.+.+.+|..+.++++|++|+|++|.+++..
T Consensus 498 --------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 498 --------------------------------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539 (968)
T ss_pred --------------------------------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence 348999999999999999999999999999999999999999
Q ss_pred chhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168 554 PSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 626 (710)
Q Consensus 554 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 626 (710)
|..|.++++|+.|+|++|++++.+|..+..+++|+.+++++|++.+.+|.. ..+..+....+.||+..|+.+
T Consensus 540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999999999999999999999999974 677788888899999998743
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.6e-54 Score=512.27 Aligned_cols=515 Identities=29% Similarity=0.428 Sum_probs=452.8
Q ss_pred CCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHhhcCCCCCCEEEccCCcC
Q 005168 20 LSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI 99 (710)
Q Consensus 20 l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l 99 (710)
..+++.|+|++|.+++.++ .+|..+++|++|+|++|+++ +.+|...+.++++|++|++++|++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~----------------~~ip~~~~~~l~~L~~L~Ls~n~l 130 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLS----------------GPIPDDIFTTSSSLRYLNLSNNNF 130 (968)
T ss_pred CCcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccC----------------CcCChHHhccCCCCCEEECcCCcc
Confidence 3578899999988887666 78888999988888877665 567775566888888888888887
Q ss_pred CC------CCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCCccC
Q 005168 100 DN------LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFP 173 (710)
Q Consensus 100 ~~------~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 173 (710)
++ +++|++|++++|.+.+..+ ..+.++++|+.|++++|.+....+.. +...++|++|++ .++.+.+.+|
T Consensus 131 ~~~~p~~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L-~~n~l~~~~p 205 (968)
T PLN00113 131 TGSIPRGSIPNLETLDLSNNMLSGEIP-NDIGSFSSLKVLDLGGNVLVGKIPNS---LTNLTSLEFLTL-ASNQLVGQIP 205 (968)
T ss_pred ccccCccccCCCCEEECcCCcccccCC-hHHhcCCCCCEEECccCcccccCChh---hhhCcCCCeeec-cCCCCcCcCC
Confidence 64 3788888888888876555 45788999999999999887666554 345668999999 8888888899
Q ss_pred hhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcC
Q 005168 174 KFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVL 253 (710)
Q Consensus 174 ~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~ 253 (710)
..+..+++|+.|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+.. +
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l 283 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-L 283 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-c
Confidence 999999999999999999999899887 78999999999999999999999999999999999999998888888776 8
Q ss_pred CCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcc
Q 005168 254 PSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGW 333 (710)
Q Consensus 254 ~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~ 333 (710)
++|++|++++|.+.+..|..+.++++|+.|++++|.+.+.+|..+ .++++|+.|++++|.+.. ..|..
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~-----------~~p~~ 351 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSG-----------EIPKN 351 (968)
T ss_pred cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH-hcCCCCCEEECcCCCCcC-----------cCChH
Confidence 899999999999998999999999999999999999986666554 479999999988777653 67888
Q ss_pred ccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEEccCccccccccccCCCccCcc
Q 005168 334 LGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNG 412 (710)
Q Consensus 334 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~ 412 (710)
++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+. +++|+.|++++|.+++
T Consensus 352 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~------------- 418 (968)
T PLN00113 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG------------- 418 (968)
T ss_pred HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee-------------
Confidence 99999999999999999999999999999999999999999988887766 8899999777776554
Q ss_pred cCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeec
Q 005168 413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE 492 (710)
Q Consensus 413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (710)
..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.+|..+.
T Consensus 419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~------------------------- 473 (968)
T PLN00113 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG------------------------- 473 (968)
T ss_pred ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-------------------------
Confidence 6778889999999999999999998888888999999999999999887776542
Q ss_pred CCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCc
Q 005168 493 GPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK 572 (710)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 572 (710)
.++|+.|++++|++++..|..|.++++|++|+|++|.+++..|+.+.++++|++|+|++|+
T Consensus 474 -------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 474 -------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred -------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence 2379999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCC
Q 005168 573 LNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL 627 (710)
Q Consensus 573 i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 627 (710)
+++.+|+.+..+++|+.|++++|++++.+|..+..+..+..+++.+|+..+..|.
T Consensus 535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 9999999999999999999999999999999888888999999999998886663
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-43 Score=354.30 Aligned_cols=435 Identities=22% Similarity=0.248 Sum_probs=319.4
Q ss_pred CcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcE
Q 005168 130 LKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLAT 209 (710)
Q Consensus 130 L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~ 209 (710)
-+.|+.+.+.+.......+..+.+ +.-+.|++ +++.+...-+..+.++++|+++++..|.++ .+|... ....+++.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp-~~t~~Ldl-snNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~ 129 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLP-SQTQTLDL-SNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEK 129 (873)
T ss_pred ceeeecCccccccccccccCCcCc-cceeeeec-cccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeE
Confidence 345666666665443333222222 25666888 677766666677788899999999988887 577654 45567999
Q ss_pred EEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCc
Q 005168 210 LFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQ 289 (710)
Q Consensus 210 L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~ 289 (710)
|+|.+|.|..+....++.++.|+.||||.|.|+ .+|...|..-.++++|+|++|.|+.+..+.|.++.+|.+|.|++|+
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 999999999888888889999999999999998 8887777655689999999999999999999999999999999999
Q ss_pred cCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEEC
Q 005168 290 LTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDI 369 (710)
Q Consensus 290 l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 369 (710)
++ .+|..+|+.+++|+.|+|..|++.. ..--.|.++++|+.|.|..|.+.....++|.++.++++|+|
T Consensus 209 it-tLp~r~Fk~L~~L~~LdLnrN~iri-----------ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 209 IT-TLPQRSFKRLPKLESLDLNRNRIRI-----------VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred cc-ccCHHHhhhcchhhhhhccccceee-----------ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 98 9999999889999999998888763 22456889999999999999999888888999999999999
Q ss_pred CCCcCcccCCCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCC
Q 005168 370 SDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQL 448 (710)
Q Consensus 370 s~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 448 (710)
+.|++..+..+... +.+|++|+++.|.+. .+.++..+-+++|++|+|++|+++...+.+|..+..|
T Consensus 277 ~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-------------rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 277 ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-------------RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred ccchhhhhhcccccccchhhhhccchhhhh-------------eeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 99999877665443 777777755544443 3555666667777777777777777777777777777
Q ss_pred CEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCC
Q 005168 449 QLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGH 528 (710)
Q Consensus 449 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 528 (710)
++|.|++|.++...-..|.. +++|++|||++|.++..
T Consensus 344 e~LnLs~Nsi~~l~e~af~~-------------------------------------------lssL~~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVG-------------------------------------------LSSLHKLDLRSNELSWC 380 (873)
T ss_pred hhhcccccchHHHHhhHHHH-------------------------------------------hhhhhhhcCcCCeEEEE
Confidence 77777777776544444544 33777777777777654
Q ss_pred CC---ccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccC-CC
Q 005168 529 IP---PQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL-EW 604 (710)
Q Consensus 529 ~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-~~ 604 (710)
+. .+|.++++|+.|+|.+|++..+...+|.++++|+.|||.+|.|..+-|++|..+ .|+.|-+..-.+.|+|. .|
T Consensus 381 IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 381 IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW 459 (873)
T ss_pred EecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence 43 347777777777777777777777777777777777777777777777777777 77777777767777663 23
Q ss_pred ccccccCCcccccCCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 005168 605 TAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERD 646 (710)
Q Consensus 605 ~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~ 646 (710)
+.+|. +..++- ......|..|+.+.+.++...+.
T Consensus 460 l~qWl------~~~~lq--~sv~a~CayPe~Lad~~i~svd~ 493 (873)
T KOG4194|consen 460 LAQWL------YRRKLQ--SSVIAKCAYPEPLADQSIVSVDT 493 (873)
T ss_pred HHHHH------Hhcccc--cceeeeccCCcccccceeEeech
Confidence 22221 111110 11112677777777665544443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-41 Score=340.45 Aligned_cols=304 Identities=23% Similarity=0.271 Sum_probs=247.1
Q ss_pred CCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccE
Q 005168 179 QHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYV 258 (710)
Q Consensus 179 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~ 258 (710)
.+.|+.||+|.|.++ .+|..-|..-.++++|+|++|.|+....+.|..+.+|..|.|+.|.++ .+|...|..+++|+.
T Consensus 148 l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 148 LPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLES 225 (873)
T ss_pred Hhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhh
Confidence 344555555555554 222222234566777777777777777788888999999999999999 999999988999999
Q ss_pred EEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCC
Q 005168 259 FNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT 338 (710)
Q Consensus 259 L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~ 338 (710)
|+|..|+|.-...-+|.++++|+.|.|.+|.++ .+.+++|.++.++++|+|+.|++.. ...+++.+++
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~-----------vn~g~lfgLt 293 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQA-----------VNEGWLFGLT 293 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhh-----------hhcccccccc
Confidence 999999998665778999999999999999998 8999999999999999998888775 5667888899
Q ss_pred ccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhh
Q 005168 339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI 418 (710)
Q Consensus 339 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~ 418 (710)
.|+.|++++|.|..+-++++...++|+.|+|+.|+|+...+ +.|
T Consensus 294 ~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~------------------------------------~sf 337 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE------------------------------------GSF 337 (873)
T ss_pred hhhhhccchhhhheeecchhhhcccceeEeccccccccCCh------------------------------------hHH
Confidence 99999999999988888888888899999998888875443 445
Q ss_pred hcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcce
Q 005168 419 GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDF 498 (710)
Q Consensus 419 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (710)
..+..|++|+|++|++..+...+|..+++|++|||++|.+++.+-+.-..
T Consensus 338 ~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~------------------------------ 387 (873)
T KOG4194|consen 338 RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA------------------------------ 387 (873)
T ss_pred HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh------------------------------
Confidence 56778888888888888777778888999999999999887655432100
Q ss_pred eeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcC
Q 005168 499 TTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 573 (710)
Q Consensus 499 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i 573 (710)
| ..++.|+.|+|.+|++..+...+|.++.+|++|||.+|.|..+.+++|..+ .|++|.+..-.+
T Consensus 388 --------f--~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 388 --------F--NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred --------h--ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 0 126689999999999998888899999999999999999999999999999 899998864433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-38 Score=305.38 Aligned_cols=476 Identities=26% Similarity=0.357 Sum_probs=292.3
Q ss_pred eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHH
Q 005168 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIR 81 (710)
Q Consensus 2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~ 81 (710)
|++++|.++ ....++.++..|.+|++++|++. ..| .+++.+..++.++.++|+++ .+|+
T Consensus 50 lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls-----------------~lp~- 108 (565)
T KOG0472|consen 50 LILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS-----------------ELPE- 108 (565)
T ss_pred hhhccCchh-hccHhhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh-----------------hccH-
Confidence 456666666 34445666666666666666665 555 56666666666666666665 7777
Q ss_pred hhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEE
Q 005168 82 EFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLS 161 (710)
Q Consensus 82 ~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~ 161 (710)
.+..+++|+.+++++|.+..++ ..++.+..++.++..+|++.....+. ..+.++..++
T Consensus 109 ~i~s~~~l~~l~~s~n~~~el~------------------~~i~~~~~l~dl~~~~N~i~slp~~~----~~~~~l~~l~ 166 (565)
T KOG0472|consen 109 QIGSLISLVKLDCSSNELKELP------------------DSIGRLLDLEDLDATNNQISSLPEDM----VNLSKLSKLD 166 (565)
T ss_pred HHhhhhhhhhhhccccceeecC------------------chHHHHhhhhhhhccccccccCchHH----HHHHHHHHhh
Confidence 7778888888888888776541 12333444444444444444332221 2223444444
Q ss_pred ecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcC
Q 005168 162 LSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNI 241 (710)
Q Consensus 162 l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i 241 (710)
+ .++......|..+. ++.|+++|...|.+. .+|..+ +.+.+|..|++.+|++.. .| .|.+|..|++++++.|+|
T Consensus 167 ~-~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 167 L-EGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQI 240 (565)
T ss_pred c-cccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhh-cchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHH
Confidence 4 33333332233332 566666666665544 455555 566666666677666653 23 566677777777777777
Q ss_pred cccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeec
Q 005168 242 RGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYL 321 (710)
Q Consensus 242 ~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l 321 (710)
. .+|.+....++++..||+++|+++ ..|+.+.-+++|+.||+|+|.|+ .+|.... ++ .|+.|-+.+|++.+.
T Consensus 241 ~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLg-nl-hL~~L~leGNPlrTi--- 312 (565)
T KOG0472|consen 241 E-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLG-NL-HLKFLALEGNPLRTI--- 312 (565)
T ss_pred H-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccc-cc-eeeehhhcCCchHHH---
Confidence 6 677766655667777777777776 55666666777777777777776 6666554 34 667777777766531
Q ss_pred cCccCccCcCccccCCCccce----eeCccC---cc-----ccccchhhcCCCCCCEEECCCCcCcccCCCCCCCC---C
Q 005168 322 TNNSLSGNIPGWLGNLTWLIH----IIMPEN---HL-----EGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPL---S 386 (710)
Q Consensus 322 ~~n~l~~~~~~~~~~l~~L~~----L~L~~n---~l-----~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~---~ 386 (710)
..--+.+- .-.-++.|+. =-++.. .- ..........+.+.+.|++++-+++.++...|... -
T Consensus 313 Rr~ii~~g---T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~ 389 (565)
T KOG0472|consen 313 RREIISKG---TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEI 389 (565)
T ss_pred HHHHHccc---HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcc
Confidence 00000000 0000000000 000000 00 00011112334566777777777777776666632 2
Q ss_pred cceEEccCccccccccccCCCccCcccCChhhhcCCCccE-EecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCC
Q 005168 387 IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSH-LILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPC 465 (710)
Q Consensus 387 L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 465 (710)
....++++|++. .+|..+..+..+.+ +.+++|.+. .+|..++.+++|..|++++|.+. .+|..
T Consensus 390 Vt~VnfskNqL~--------------elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e 453 (565)
T KOG0472|consen 390 VTSVNFSKNQLC--------------ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEE 453 (565)
T ss_pred eEEEecccchHh--------------hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchh
Confidence 666766666665 55655555555443 455555554 67777888888888888888776 55555
Q ss_pred cccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCC
Q 005168 466 FDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLS 545 (710)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 545 (710)
++.+ ..|+.|+++.|.+. ..|.....+..++.+-.+
T Consensus 454 ~~~l-------------------------------------------v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas 489 (565)
T KOG0472|consen 454 MGSL-------------------------------------------VRLQTLNLSFNRFR-MLPECLYELQTLETLLAS 489 (565)
T ss_pred hhhh-------------------------------------------hhhheecccccccc-cchHHHhhHHHHHHHHhc
Confidence 5443 36888888888877 677777777777777778
Q ss_pred CccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccc
Q 005168 546 YNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598 (710)
Q Consensus 546 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~ 598 (710)
+|++..+.++.+.++.+|..|||.+|.+. .+|..+.++++|+.|++.||||.
T Consensus 490 ~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 490 NNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 88898888888888899999999999988 77778888999999999999988
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-36 Score=293.79 Aligned_cols=483 Identities=23% Similarity=0.306 Sum_probs=294.0
Q ss_pred CCCCCCEEeCCCCCCC-------CcccccEEecCCCcceeecCHHhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccc
Q 005168 44 SLRDLEELDIGENKID-------KFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFR 116 (710)
Q Consensus 44 ~l~~L~~L~Ls~n~l~-------~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~ 116 (710)
.-..|+.+.+++|.+. ++..+.+|++++|+.. ++|+ +++.+.+++.++.+.|+++.+
T Consensus 43 ~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs~n~ls~l-------------- 106 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPA-AIGELEALKSLNVSHNKLSEL-------------- 106 (565)
T ss_pred hhcchhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCH-HHHHHHHHHHhhcccchHhhc--------------
Confidence 3344445555555443 2223333333333333 6777 777777777777777776643
Q ss_pred cccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccC
Q 005168 117 IPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEF 196 (710)
Q Consensus 117 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~ 196 (710)
+ +....+.+++.++.+.|.+. .+|..++.+..++.++..+|.+. ..
T Consensus 107 ---p-~~i~s~~~l~~l~~s~n~~~-----------------------------el~~~i~~~~~l~dl~~~~N~i~-sl 152 (565)
T KOG0472|consen 107 ---P-EQIGSLISLVKLDCSSNELK-----------------------------ELPDSIGRLLDLEDLDATNNQIS-SL 152 (565)
T ss_pred ---c-HHHhhhhhhhhhhcccccee-----------------------------ecCchHHHHhhhhhhhccccccc-cC
Confidence 2 34556666777766666543 23344555556666666666666 34
Q ss_pred ChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcC
Q 005168 197 PNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGN 276 (710)
Q Consensus 197 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~ 276 (710)
|..+ ..+.++..+++.+|++....|..+. ++.|++||...|-+. .+|.+++. +.+|+.|+++.|+|. ..| .|.+
T Consensus 153 p~~~-~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~g 226 (565)
T KOG0472|consen 153 PEDM-VNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP-EFPG 226 (565)
T ss_pred chHH-HHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-CCCc
Confidence 4444 3566666777777776665554444 677777777777776 77777665 667777777777776 444 5777
Q ss_pred CCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccch
Q 005168 277 MKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPV 356 (710)
Q Consensus 277 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 356 (710)
+..|+.|.++.|.|. .+|+...+.++++..||+..|++++ .|+.+.-+.+|+.||+++|.+++ .|.
T Consensus 227 cs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke------------~Pde~clLrsL~rLDlSNN~is~-Lp~ 292 (565)
T KOG0472|consen 227 CSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE------------VPDEICLLRSLERLDLSNNDISS-LPY 292 (565)
T ss_pred cHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc------------CchHHHHhhhhhhhcccCCcccc-CCc
Confidence 777777777777776 7777777677777777777776664 56666666667777777777663 455
Q ss_pred hhcCCCCCCEEECCCCcCcccCCCCCCCC---CcceEEc--cCccccccccc-cCCCccCcccCChhhhcCCCccEEecC
Q 005168 357 EFCQLYSLQILDISDNNISGSLPSCFHPL---SIEQVHL--SKNMLHRQLKR-DLSYNLLNGSIPDWIGELSQLSHLILG 430 (710)
Q Consensus 357 ~~~~l~~L~~L~ls~n~i~~~~~~~~~~~---~L~~L~l--~~n~l~~~~~~-~l~~n~~~~~~~~~~~~l~~L~~L~L~ 430 (710)
+++++ .|+.|-+.+|.+..+..+..... -|++|+= ....+...... .-......+..|+ ...+-+.+.|+++
T Consensus 293 sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~-~~~~i~tkiL~~s 370 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD-IYAIITTKILDVS 370 (565)
T ss_pred ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc-hhhhhhhhhhccc
Confidence 56666 67777777776654332222211 0111110 00000000000 0000000011111 1123456777777
Q ss_pred CCcccccCCcccCCCC--CCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceec
Q 005168 431 HNNLEGEVPVQLCELN--QLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQ 508 (710)
Q Consensus 431 ~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (710)
+-+++..+.+.|.... -...++++.|++. .+|..+..+.-... ........+.+++.
T Consensus 371 ~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT--------------------~l~lsnn~isfv~~ 429 (565)
T KOG0472|consen 371 DKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVT--------------------DLVLSNNKISFVPL 429 (565)
T ss_pred ccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHH--------------------HHHhhcCccccchH
Confidence 7777744333443322 2667777777775 34433322110000 00000000111111
Q ss_pred -ccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCC
Q 005168 509 -GKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 587 (710)
Q Consensus 509 -~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L 587 (710)
...+++|..|+|++|-+. .+|..++++..|+.||+++|++.. .|.....+..++.+-.++|++....|+.+..+.+|
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred HHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 133678999999999998 688899999999999999999984 57777778888888889999998888889999999
Q ss_pred CEEeccCCccccccCCCccccccCCcccccCCCCC
Q 005168 588 EVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFL 622 (710)
Q Consensus 588 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~ 622 (710)
..||+.+|.+... |..++.+.++..+.+.|||+.
T Consensus 508 ~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 508 TTLDLQNNDLQQI-PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ceeccCCCchhhC-ChhhccccceeEEEecCCccC
Confidence 9999999999865 445899999999999999986
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=6.1e-34 Score=302.37 Aligned_cols=492 Identities=25% Similarity=0.271 Sum_probs=309.0
Q ss_pred eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC-------CcccccEEecCCCcc
Q 005168 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID-------KFVVSKELYLDDTGF 74 (710)
Q Consensus 2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~-------~l~~l~~L~L~~~~~ 74 (710)
+|.|..+++-|+..-+..-. ++.|+++.|-+- ..|.+.....-+|+.||+++|.+. .+++|+.|+++.|.+
T Consensus 3 vd~s~~~l~~ip~~i~~~~~-~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEA-LQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCcccchhhccHHH-HHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhH
Confidence 56677777755555444333 777777777554 344445555556777777777654 445666777777777
Q ss_pred eeecCHHhhcCCCCCCEEEccCCcCCCC-------CCCcEEEccccccccccCcccccCCCCCcEEEccCCccccccccc
Q 005168 75 KGTLDIREFDSFNNLEVLDMSYNKIDNL-------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITES 147 (710)
Q Consensus 75 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 147 (710)
. ..|. ...++.+|+++.|.+|.+... .+|+.|+++.|++. ..| ..+..+..+..+..++|.....
T Consensus 81 ~-~vp~-s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~~~---- 152 (1081)
T KOG0618|consen 81 R-SVPS-SCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKIQR---- 152 (1081)
T ss_pred h-hCch-hhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhhhh----
Confidence 6 6665 777777777777777765544 56677777777665 233 2355566666777777722111
Q ss_pred ccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccC
Q 005168 148 HSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHS 227 (710)
Q Consensus 148 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 227 (710)
.+...++.+++ ..+.+.+.++..+..+++ .++++.|.+.. . . ...+++|+.+....|++....- .
T Consensus 153 ----lg~~~ik~~~l-~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~-~--d-ls~~~~l~~l~c~rn~ls~l~~----~ 217 (1081)
T KOG0618|consen 153 ----LGQTSIKKLDL-RLNVLGGSFLIDIYNLTH--QLDLRYNEMEV-L--D-LSNLANLEVLHCERNQLSELEI----S 217 (1081)
T ss_pred ----hccccchhhhh-hhhhcccchhcchhhhhe--eeecccchhhh-h--h-hhhccchhhhhhhhcccceEEe----c
Confidence 11123666666 555555666665555554 68888777661 1 1 1466777777777776653221 2
Q ss_pred CCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcE
Q 005168 228 HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF 307 (710)
Q Consensus 228 ~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~ 307 (710)
-++++.|+.++|.++ .+.... ...+|+.++++.|+++. .|++.+.+.+|+.++..+|++. .+|..++ ...+|+.
T Consensus 218 g~~l~~L~a~~n~l~-~~~~~p--~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-~~~~L~~ 291 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLT-TLDVHP--VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRIS-RITSLVS 291 (1081)
T ss_pred CcchheeeeccCcce-eecccc--ccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHh-hhhhHHH
Confidence 356778888888777 332222 13478888888888774 4577778888888888888886 7777777 4777888
Q ss_pred EEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCC-CCEEECCCCcCcccCCCC-CCCC
Q 005168 308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYS-LQILDISDNNISGSLPSC-FHPL 385 (710)
Q Consensus 308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~ls~n~i~~~~~~~-~~~~ 385 (710)
|++..|.+.. +|....+++.|++|+|..|++....+..|.-... |+.|+.+.|.+...+... ....
T Consensus 292 l~~~~nel~y------------ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~ 359 (1081)
T KOG0618|consen 292 LSAAYNELEY------------IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHA 359 (1081)
T ss_pred HHhhhhhhhh------------CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhH
Confidence 8777777763 5666667778888888888777554444444443 677777777776554211 1145
Q ss_pred CcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCC
Q 005168 386 SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPC 465 (710)
Q Consensus 386 ~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 465 (710)
.|+.|++.+|.++. ..-..+.+..+|+.|+|++|++...+...+.++..|++|+||+|.++ .+|..
T Consensus 360 ~Lq~LylanN~Ltd-------------~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 360 ALQELYLANNHLTD-------------SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred HHHHHHHhcCcccc-------------cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence 56666655555543 33334556677777777777777544445667777777777777776 34444
Q ss_pred cccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCC
Q 005168 466 FDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLS 545 (710)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 545 (710)
...+ +.|++|...+|.+. ..| .+..+++|+.+|+|
T Consensus 426 va~~-------------------------------------------~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 426 VANL-------------------------------------------GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred HHhh-------------------------------------------hhhHHHhhcCCcee-ech-hhhhcCcceEEecc
Confidence 4432 36777777777776 445 66777777777777
Q ss_pred CccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCC
Q 005168 546 YNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYN 595 (710)
Q Consensus 546 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N 595 (710)
.|.++...-..-..-++|++||+++|.-.......|..++++...++.-|
T Consensus 461 ~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 461 CNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 77776553322222267777777777644355555666666666666655
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.6e-33 Score=284.38 Aligned_cols=350 Identities=27% Similarity=0.412 Sum_probs=200.9
Q ss_pred CccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcc-cCChh
Q 005168 170 VTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRG-HIPVE 248 (710)
Q Consensus 170 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~-~~~~~ 248 (710)
+.+|.....++.++.|.+.+..+. .+|+.+ +.+.+|++|.+.+|++.... ..++.++.|+.+++.+|++.. -+|.+
T Consensus 22 ~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~d 98 (1255)
T KOG0444|consen 22 DRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTD 98 (1255)
T ss_pred CcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCch
Confidence 445555555555666666554443 455554 45566666666666554322 334555666666666665542 25556
Q ss_pred hhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCcc
Q 005168 249 IGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSG 328 (710)
Q Consensus 249 ~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~ 328 (710)
+|. +..|..|||++|+++ ..|..+..-+++-+|+||+|+|. .||..+|.++..|-+||||+|++.
T Consensus 99 iF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe------------ 163 (1255)
T KOG0444|consen 99 IFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE------------ 163 (1255)
T ss_pred hcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh------------
Confidence 655 556666666666665 45555566666666666666665 666666666666666666666554
Q ss_pred CcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCc-ccCCCCCC-CCCcceEEccCccccccccccCC
Q 005168 329 NIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS-GSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLS 406 (710)
Q Consensus 329 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~-~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~ 406 (710)
..|+.+..+..|++|+|++|.+....-..+..+.+|++|.+++.+-+ ...|..+. +.+|..++++.|.+.
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-------- 235 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-------- 235 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC--------
Confidence 35555666666666666666555444444444555555555554332 12222222 455555555555444
Q ss_pred CccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccc
Q 005168 407 YNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFE 486 (710)
Q Consensus 407 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (710)
.+|..+-.+++|+.|+|++|+|++ .........+|+.|++|.|+++ ..|++...
T Consensus 236 ------~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcK------------------ 289 (1255)
T KOG0444|consen 236 ------IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCK------------------ 289 (1255)
T ss_pred ------cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhh------------------
Confidence 555666666666666666666653 2223344556666666666665 45555544
Q ss_pred cceeecCCCcceeeccccceecccccccccEEECcCCcCCC-CCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCE
Q 005168 487 ISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG-HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIES 565 (710)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 565 (710)
++.|+.|++.+|+++- -+|..++.+.+|+++..++|.+. +.|+.+..+..|+.
T Consensus 290 -------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~k 343 (1255)
T KOG0444|consen 290 -------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQK 343 (1255)
T ss_pred -------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHH
Confidence 2356666666666543 24566666666666666666665 55666666666666
Q ss_pred EeCcCCcCcccCCcccccCCCCCEEeccCCccc
Q 005168 566 LDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598 (710)
Q Consensus 566 L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~ 598 (710)
|.|++|++. .+|+++.-++.|+.||+..||-.
T Consensus 344 L~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 344 LKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 666666666 56666666666666666666543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=7.3e-32 Score=273.84 Aligned_cols=372 Identities=27% Similarity=0.310 Sum_probs=303.4
Q ss_pred CCCCCCEEEccCCcCc-ccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCc
Q 005168 178 HQHDLEYVRLSHIKMN-GEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSL 256 (710)
Q Consensus 178 ~~~~L~~L~ls~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L 256 (710)
.++-++-+|+++|.++ +.+|... ...++++-|.+.+.++. .+|..++.+.+|++|.+++|++. .+-..+.. +|.|
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~L 80 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRL 80 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhh
Confidence 4566778899999888 4778776 78889999999888775 46778888899999999999887 55555555 7889
Q ss_pred cEEEccCCcCcc-cCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcccc
Q 005168 257 YVFNISMNALDG-SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG 335 (710)
Q Consensus 257 ~~L~L~~n~i~~-~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~ 335 (710)
+.+++++|++.. -+|..+-.+..|+.||||+|++. ++|...- .-+++-.|+||+|.|.. +....|.
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N~Iet-----------IPn~lfi 147 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIET-----------IPNSLFI 147 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccCcccc-----------CCchHHH
Confidence 999999888763 34555667888999999999998 8888765 46778888887777764 5556788
Q ss_pred CCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCC-CCCCcceEEccCccccccccccCCCccCcccC
Q 005168 336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCF-HPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSI 414 (710)
Q Consensus 336 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~ 414 (710)
+++.|-.|+|++|++.. .|.....+..|++|+|++|.+.-..-..+ .+.+|+.|++++.+-+- ..+
T Consensus 148 nLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl------------~N~ 214 (1255)
T KOG0444|consen 148 NLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL------------DNI 214 (1255)
T ss_pred hhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh------------hcC
Confidence 99999999999999984 56667889999999999998863322222 26788888888776442 257
Q ss_pred ChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCC
Q 005168 415 PDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGP 494 (710)
Q Consensus 415 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (710)
|.++.++.+|..++++.|.+. ..|+.+-.+++|+.|+||+|+++...- +.+.
T Consensus 215 Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-~~~~-------------------------- 266 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-TEGE-------------------------- 266 (1255)
T ss_pred CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec-cHHH--------------------------
Confidence 888899999999999999998 889999999999999999999984311 1100
Q ss_pred CcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCC-CCchhhcCCccCCEEeCcCCcC
Q 005168 495 QGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTG-LIPSTFSNLKHIESLDLSYNKL 573 (710)
Q Consensus 495 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~i 573 (710)
-.+|++|++|.|+++ .+|.++..+++|+.|.+.+|+++. -+|..++.+..|+.+..++|.+
T Consensus 267 -----------------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 267 -----------------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred -----------------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 127999999999999 789999999999999999999873 3688999999999999999999
Q ss_pred cccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCC
Q 005168 574 NGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL 627 (710)
Q Consensus 574 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 627 (710)
. ..|+.+..+..|+.|.|+.|.+.+ .|+.+--++.+..+++..||-+.-+|.
T Consensus 329 E-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 329 E-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred c-cCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCccCCCC
Confidence 9 999999999999999999999986 577777778889999999998876653
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=3.2e-31 Score=281.84 Aligned_cols=406 Identities=24% Similarity=0.293 Sum_probs=281.5
Q ss_pred eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC-------CcccccEEecCCCcc
Q 005168 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID-------KFVVSKELYLDDTGF 74 (710)
Q Consensus 2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~-------~l~~l~~L~L~~~~~ 74 (710)
|++++|.+-..+-+...+.-+|+.||+++|.+. .+| ..+..+.+|+.|+++.|.|. ++.+|+++.|.+|..
T Consensus 26 ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp-~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l 103 (1081)
T KOG0618|consen 26 LNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFP-IQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRL 103 (1081)
T ss_pred hhccccccccCchHHhhheeeeEEeeccccccc-cCC-chhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchh
Confidence 567777776666555666666888888888887 677 77888888888888888765 667788888888888
Q ss_pred eeecCHHhhcCCCCCCEEEccCCcCCCC-------C-------------------CCcEEEccccccccccCcccccCCC
Q 005168 75 KGTLDIREFDSFNNLEVLDMSYNKIDNL-------V-------------------VPQELRLSDNHFRIPISLEPLFNHS 128 (710)
Q Consensus 75 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-------~-------------------~L~~L~L~~~~l~~~~~~~~l~~l~ 128 (710)
. .+|. .+..+.+|++|++|+|.|... . ..+++++..+.+.+.+.. ...++.
T Consensus 104 ~-~lP~-~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~-~i~~l~ 180 (1081)
T KOG0618|consen 104 Q-SLPA-SISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI-DIYNLT 180 (1081)
T ss_pred h-cCch-hHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc-chhhhh
Confidence 6 7777 888888888888888877655 2 244445554444432221 122222
Q ss_pred CCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCc
Q 005168 129 RLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLA 208 (710)
Q Consensus 129 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~ 208 (710)
. .|+|++|.+.... .....+++.+.. ..+.+. ......++++.|+.++|.++...+.. ...+++
T Consensus 181 ~--~ldLr~N~~~~~d------ls~~~~l~~l~c-~rn~ls----~l~~~g~~l~~L~a~~n~l~~~~~~p---~p~nl~ 244 (1081)
T KOG0618|consen 181 H--QLDLRYNEMEVLD------LSNLANLEVLHC-ERNQLS----ELEISGPSLTALYADHNPLTTLDVHP---VPLNLQ 244 (1081)
T ss_pred e--eeecccchhhhhh------hhhccchhhhhh-hhcccc----eEEecCcchheeeeccCcceeecccc---ccccce
Confidence 2 3666666554111 111223333333 222111 11113367777777777776333221 346778
Q ss_pred EEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCC
Q 005168 209 TLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNN 288 (710)
Q Consensus 209 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n 288 (710)
.++++++++.+.. ..+..+.+|+.++..+|.++ .+|..++. ..+|+.|....|.+. -+|...++++.|++|+|..|
T Consensus 245 ~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 245 YLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred eeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhc
Confidence 8888888877644 77777888888888888887 77777776 678888888888887 44555677888888888888
Q ss_pred ccCCcCChhhhcCCCC-CcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEE
Q 005168 289 QLTGEIPEHLAVGCVN-LQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQIL 367 (710)
Q Consensus 289 ~l~~~i~~~~~~~l~~-L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 367 (710)
.+. .+|...+.-... |+.|+.+.|++.. .....=..++.|+.|++.+|.+++.....+.+.++|+.|
T Consensus 321 ~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-----------lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVL 388 (1081)
T KOG0618|consen 321 NLP-SLPDNFLAVLNASLNTLNVSSNKLST-----------LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVL 388 (1081)
T ss_pred ccc-ccchHHHhhhhHHHHHHhhhhccccc-----------cccccchhhHHHHHHHHhcCcccccchhhhccccceeee
Confidence 887 777776654444 6666666666543 221122346788899999999988777778888999999
Q ss_pred ECCCCcCcccCCCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCC
Q 005168 368 DISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELN 446 (710)
Q Consensus 368 ~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 446 (710)
+|++|++...+...+. ...|++|++|+|+++ .+|.....+..|++|...+|.+. ..| .+..++
T Consensus 389 hLsyNrL~~fpas~~~kle~LeeL~LSGNkL~--------------~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~ 452 (1081)
T KOG0618|consen 389 HLSYNRLNSFPASKLRKLEELEELNLSGNKLT--------------TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLP 452 (1081)
T ss_pred eecccccccCCHHHHhchHHhHHHhcccchhh--------------hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcC
Confidence 9999999877776666 778888888888777 67778888888999999988887 556 678888
Q ss_pred CCCEEEccCCcccc
Q 005168 447 QLQLLDLSNNSLHG 460 (710)
Q Consensus 447 ~L~~L~L~~n~l~~ 460 (710)
.|+.+|++.|+++.
T Consensus 453 qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 453 QLKVLDLSCNNLSE 466 (1081)
T ss_pred cceEEecccchhhh
Confidence 99999999888764
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.94 E-value=1e-28 Score=239.02 Aligned_cols=308 Identities=23% Similarity=0.264 Sum_probs=185.9
Q ss_pred CccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccc
Q 005168 255 SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWL 334 (710)
Q Consensus 255 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~ 334 (710)
...+++|..|+|+.+.+.+|..+++|+.||||+|.|+ .|...+|+|+++|..|-+.+ +|+|+.+..+.|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg----------~NkI~~l~k~~F 136 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG----------NNKITDLPKGAF 136 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc----------CCchhhhhhhHh
Confidence 4455555555555555555555555555555555555 55555555555544443222 122222444455
Q ss_pred cCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEEccCccccccccc-cCCCccCcc
Q 005168 335 GNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKR-DLSYNLLNG 412 (710)
Q Consensus 335 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~-~l~~n~~~~ 412 (710)
+++..|+-|.+.-|++.-+..++|..++++..|.+.+|.+..+....|. +..++.+++..|.+...... .+. .+..
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla--~~~a 214 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA--DDLA 214 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhh--hHHh
Confidence 5555555555555555555666666666666666666666666555555 55666666666654321100 000 0000
Q ss_pred cCChhhhcCCCccEEecCCCcccccCCcccC-CCCCCCEEEccCCcccccCC-CCcccccccccccCCCCCcccccccee
Q 005168 413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLC-ELNQLQLLDLSNNSLHGSIP-PCFDNTTLYESYNNSSSLDEKFEISFF 490 (710)
Q Consensus 413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (710)
..|..+++.....-..+.+.++..+.+..|. .+.++..--.+.+...++-| .+|
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf------------------------ 270 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF------------------------ 270 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHH------------------------
Confidence 1122233333333334444444433332221 11111111111111111111 222
Q ss_pred ecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcC
Q 005168 491 IEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 570 (710)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 570 (710)
+.+++|++|+|++|+++++.+.+|.++..+++|.|..|+|..+...+|.++..|+.|+|.+
T Consensus 271 -------------------~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 271 -------------------KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD 331 (498)
T ss_pred -------------------hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecC
Confidence 3377999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccCCcccccCCCCCEEeccCCcccccc-CCCccccccCCcccccCCC
Q 005168 571 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEI-LEWTAQFATFNKSSYEGNT 620 (710)
Q Consensus 571 N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~~~~~~~~~n~ 620 (710)
|+|+...|.+|..+.+|..|++-.|||.|.| ..|+..|..-. ...|||
T Consensus 332 N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~--~~~~~~ 380 (498)
T KOG4237|consen 332 NQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKK--SVVGNP 380 (498)
T ss_pred CeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhC--CCCCCC
Confidence 9999999999999999999999999999998 45665543322 256666
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=5e-26 Score=220.49 Aligned_cols=360 Identities=19% Similarity=0.171 Sum_probs=242.6
Q ss_pred CCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEccc-CcCcccCChhhhhcCCCccE
Q 005168 180 HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISN-NNIRGHIPVEIGDVLPSLYV 258 (710)
Q Consensus 180 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~-n~i~~~~~~~~~~~~~~L~~ 258 (710)
+...++++..|.|+ .+|...|+.+++||.|+|++|+|+.+.|++|.+++++..|-+.+ |+|+ .+|...|..+..++.
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence 35778888888888 56666668999999999999999999999999998887766555 8888 889888888888888
Q ss_pred EEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCe--------------------
Q 005168 259 FNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEG-------------------- 318 (710)
Q Consensus 259 L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-------------------- 318 (710)
|.+.-|++.-+..++|..+++|..|.+..|.+. .++...|.++.+++.+.+..|++...
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 988888888888888999999999999999988 88888888899999999888884311
Q ss_pred ------------------------------eeccCccCccCcC-ccccCCCccceeeCccCccccccchhhcCCCCCCEE
Q 005168 319 ------------------------------LYLTNNSLSGNIP-GWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQIL 367 (710)
Q Consensus 319 ------------------------------l~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 367 (710)
-..+.+...++.| ..|..+++|++|+|++|+++++.+.+|.++..++.|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 0111222223333 457888888888888888888888888888888888
Q ss_pred ECCCCcCcccCCCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccc-----cCCcc
Q 005168 368 DISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEG-----EVPVQ 441 (710)
Q Consensus 368 ~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~ 441 (710)
.|..|++..+....|. +..|+.|++.+|+++. ..|.+|..+.+|.+|++-.|.+.- +.-++
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~-------------~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W 370 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITT-------------VAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW 370 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEE-------------EecccccccceeeeeehccCcccCccchHHHHHH
Confidence 8888888877777777 7778888666666554 667778888888888887766421 00000
Q ss_pred -----------cCCCCCCCEEEccCCccccc---CCCCcccccccccccCCCCCccccccceeecCCCcceeecccccee
Q 005168 442 -----------LCELNQLQLLDLSNNSLHGS---IPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIY 507 (710)
Q Consensus 442 -----------~~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (710)
-+.-..++.+.+++..+... -|+..+-. .....++..-...+-+.++.+.... .
T Consensus 371 lr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~-----------~s~~cP~~c~c~~tVvRcSnk~lk~-l 438 (498)
T KOG4237|consen 371 LRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCL-----------TSSPCPPPCTCLDTVVRCSNKLLKL-L 438 (498)
T ss_pred HhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCC-----------CCCCCCCCcchhhhhHhhcccchhh-c
Confidence 12233577888887765422 11111100 0000000000001111222222111 1
Q ss_pred cccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCC
Q 005168 508 QGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 571 (710)
Q Consensus 508 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 571 (710)
....+...++|++++|.++. +|.. .+++| .+|+++|+++.+....|.+++.|.+|-|++|
T Consensus 439 p~~iP~d~telyl~gn~~~~-vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 439 PRGIPVDVTELYLDGNAITS-VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CCCCCchhHHHhcccchhcc-cCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 12234456667777777773 3433 45556 6777777777666667777777777776665
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=4.8e-21 Score=228.54 Aligned_cols=300 Identities=21% Similarity=0.235 Sum_probs=173.7
Q ss_pred CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEE
Q 005168 230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLM 309 (710)
Q Consensus 230 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~ 309 (710)
+|+.|++.++.++ .+|..+. +.+|+.|++.+|++. ..+..+..+++|+.|+|+++.....+|. +..+++|++|+
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~ 663 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLK 663 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEE
Confidence 3555555555554 5554432 345555555555554 2344445555555555555432224443 22345555555
Q ss_pred ccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcce
Q 005168 310 LSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQ 389 (710)
Q Consensus 310 Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~ 389 (710)
+++|.... .+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|......|.. +.+|+.
T Consensus 664 L~~c~~L~-----------~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~ 729 (1153)
T PLN03210 664 LSDCSSLV-----------ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISW 729 (1153)
T ss_pred ecCCCCcc-----------ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCe
Confidence 55443221 234445555555555555543322333322 4445555555554433222211 234455
Q ss_pred EEccCccccccccc---------cCCC-------ccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEc
Q 005168 390 VHLSKNMLHRQLKR---------DLSY-------NLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDL 453 (710)
Q Consensus 390 L~l~~n~l~~~~~~---------~l~~-------n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 453 (710)
|++++|.+...... ++.. +.+....+..+...++|+.|++++|.....+|..+.++++|+.|++
T Consensus 730 L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L 809 (1153)
T PLN03210 730 LDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809 (1153)
T ss_pred eecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence 55544443321100 0000 0111112222334568899999988777678888888999999999
Q ss_pred cCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccc
Q 005168 454 SNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI 533 (710)
Q Consensus 454 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 533 (710)
++|...+.+|... + +++|+.|++++|......|..
T Consensus 810 s~C~~L~~LP~~~-~-------------------------------------------L~sL~~L~Ls~c~~L~~~p~~- 844 (1153)
T PLN03210 810 ENCINLETLPTGI-N-------------------------------------------LESLESLDLSGCSRLRTFPDI- 844 (1153)
T ss_pred CCCCCcCeeCCCC-C-------------------------------------------ccccCEEECCCCCcccccccc-
Confidence 8876544555432 1 458999999998655455543
Q ss_pred cccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCcc
Q 005168 534 GNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL 597 (710)
Q Consensus 534 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l 597 (710)
.++|++|+|++|.++.+ |..+..+++|+.|++++|+-...+|.....+++|+.+++++|+-
T Consensus 845 --~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 845 --STNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred --ccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 36899999999999864 67889999999999999654446777788899999999998853
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=2.3e-20 Score=222.67 Aligned_cols=336 Identities=22% Similarity=0.238 Sum_probs=233.8
Q ss_pred CCCCCcccEEEecCCCC------CCCccChhccCC-CCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCcc
Q 005168 151 TAPNFQLQSLSLSSSYG------DGVTFPKFLYHQ-HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWL 223 (710)
Q Consensus 151 ~~~~~~L~~L~l~~~~~------~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 223 (710)
+.++.+|+.|.+ .... ....+|..+..+ .+|+.|++.++.+. .+|..+ ...+|+.|++.++++.. .+.
T Consensus 554 F~~m~~L~~L~~-~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~-L~~ 628 (1153)
T PLN03210 554 FKGMRNLLFLKF-YTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK-LWD 628 (1153)
T ss_pred HhcCccccEEEE-ecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc-ccc
Confidence 445667788877 3321 122345555554 35888888877664 556554 56788888888887764 456
Q ss_pred CccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCC
Q 005168 224 PIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV 303 (710)
Q Consensus 224 ~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~ 303 (710)
.+..+++|+.|+++++...+.+|. +. .+++|+.|++++|.....+|..+.++++|+.|++++|.....+|... +++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~ 704 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLK 704 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cc-cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCC
Confidence 667788888888887653336664 22 36788888888876666777778888888888888864333777655 577
Q ss_pred CCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCccc------
Q 005168 304 NLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGS------ 377 (710)
Q Consensus 304 ~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~------ 377 (710)
+|++|++++|...+ ..|. ..++|++|++++|.+.. .|..+ .+++|++|.+.++.....
T Consensus 705 sL~~L~Lsgc~~L~-----------~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 705 SLYRLNLSGCSRLK-----------SFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred CCCEEeCCCCCCcc-----------cccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccc
Confidence 88888887775432 2232 23577888888888764 34433 567788887776443211
Q ss_pred -CCCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccC
Q 005168 378 -LPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSN 455 (710)
Q Consensus 378 -~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 455 (710)
.+..+. +++|+.|++++|.. ...+|.+++++++|+.|++++|..-+.+|... .+++|+.|++++
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~-------------l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~ 834 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPS-------------LVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSG 834 (1153)
T ss_pred cchhhhhccccchheeCCCCCC-------------ccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCC
Confidence 111111 45778886666543 33678889999999999999986544666655 789999999999
Q ss_pred CcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccc
Q 005168 456 NSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGN 535 (710)
Q Consensus 456 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 535 (710)
|.....+|.. +++++.|+|++|.++ .+|..+..
T Consensus 835 c~~L~~~p~~----------------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~ 867 (1153)
T PLN03210 835 CSRLRTFPDI----------------------------------------------STNISDLNLSRTGIE-EVPWWIEK 867 (1153)
T ss_pred CCcccccccc----------------------------------------------ccccCEeECCCCCCc-cChHHHhc
Confidence 8654333321 347999999999998 57888999
Q ss_pred cCCCCEEeCCCc-cCCCCCchhhcCCccCCEEeCcCCcC
Q 005168 536 LTRIQTLNLSYN-NLTGLIPSTFSNLKHIESLDLSYNKL 573 (710)
Q Consensus 536 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~i 573 (710)
+++|+.|+|++| ++.. .|..+..+++|+.|++++|.-
T Consensus 868 l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCCcc
Confidence 999999999985 5655 555678899999999999853
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.9e-21 Score=213.40 Aligned_cols=263 Identities=27% Similarity=0.327 Sum_probs=167.1
Q ss_pred CCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEc
Q 005168 231 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 310 (710)
Q Consensus 231 L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L 310 (710)
-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++ .+|.. .++|++|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~L 269 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELSI 269 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----ccccceeec
Confidence 446666666666 6666553 266667777766663 332 2466777777777766 55532 346666666
Q ss_pred cCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceE
Q 005168 311 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV 390 (710)
Q Consensus 311 s~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L 390 (710)
++|.+.. +|.. .++|+.|++++|+++.. |. ..++|+.|++++|.+.+++. .+..|+.|
T Consensus 270 s~N~L~~------------Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L 327 (788)
T PRK15387 270 FSNPLTH------------LPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA---LPSELCKL 327 (788)
T ss_pred cCCchhh------------hhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC---Cccccccc
Confidence 6665542 2221 24566667777766643 32 23567777777777765433 13456666
Q ss_pred EccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCccccc
Q 005168 391 HLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTT 470 (710)
Q Consensus 391 ~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 470 (710)
++++|.++. +|.. ..+|++|+|++|++++ +|.. ..+|+.|++++|.+++ +|..
T Consensus 328 ~Ls~N~L~~--------------LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l----- 380 (788)
T PRK15387 328 WAYNNQLTS--------------LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL----- 380 (788)
T ss_pred ccccCcccc--------------cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc-----
Confidence 666655542 2221 1468888888888874 3332 3467778888888763 3321
Q ss_pred ccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCC
Q 005168 471 LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLT 550 (710)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 550 (710)
++.|+.|++++|.+++ +|.. .++|+.|++++|.++
T Consensus 381 -----------------------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls 415 (788)
T PRK15387 381 -----------------------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT 415 (788)
T ss_pred -----------------------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC
Confidence 2367888888888885 3432 357888888888888
Q ss_pred CCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCc
Q 005168 551 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWT 605 (710)
Q Consensus 551 ~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 605 (710)
+++ .. ..+|+.|++++|+|+ .+|+.+..+++|+.|++++|++++..+..+
T Consensus 416 sIP-~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 416 SLP-ML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCC-cc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 753 32 246788888888888 678888888888899999998887665533
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=7.4e-20 Score=202.33 Aligned_cols=264 Identities=27% Similarity=0.327 Sum_probs=132.9
Q ss_pred CCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEE
Q 005168 181 DLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFN 260 (710)
Q Consensus 181 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~ 260 (710)
.-..|+++.+.++ .+|..+. ++|+.|.+.+|+++.. |. .+++|++|++++|+++ .+|.. .++|+.|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccC-cccCc----ccccceee
Confidence 3445666666555 3454431 3555666665555542 21 1355556666666555 44431 23555555
Q ss_pred ccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCcc
Q 005168 261 ISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWL 340 (710)
Q Consensus 261 L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L 340 (710)
+++|.+.. +|.. .++|+.|++++|+++ .+|. ..++|++|++++|.+.. +|.. ...|
T Consensus 269 Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~------------Lp~l---p~~L 324 (788)
T PRK15387 269 IFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS------------LPAL---PSEL 324 (788)
T ss_pred ccCCchhh-hhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCcccc------------CCCC---cccc
Confidence 55555552 2221 234555555555555 4443 13455555555554442 1111 1234
Q ss_pred ceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhc
Q 005168 341 IHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGE 420 (710)
Q Consensus 341 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~ 420 (710)
+.|++++|.++.+ |. + ..+|+.|++++|++.++++ .
T Consensus 325 ~~L~Ls~N~L~~L-P~-l--p~~Lq~LdLS~N~Ls~LP~-------------------------------------l--- 360 (788)
T PRK15387 325 CKLWAYNNQLTSL-PT-L--PSGLQELSVSDNQLASLPT-------------------------------------L--- 360 (788)
T ss_pred cccccccCccccc-cc-c--ccccceEecCCCccCCCCC-------------------------------------C---
Confidence 4455555555432 21 0 1245555555555443221 1
Q ss_pred CCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceee
Q 005168 421 LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTT 500 (710)
Q Consensus 421 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (710)
.++|+.|++++|++.. +|.. ..+|+.|++++|.+++ +|..
T Consensus 361 p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l----------------------------------- 400 (788)
T PRK15387 361 PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL----------------------------------- 400 (788)
T ss_pred Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc-----------------------------------
Confidence 1345556666666653 3322 2356666666666653 2211
Q ss_pred ccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcc
Q 005168 501 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ 580 (710)
Q Consensus 501 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~ 580 (710)
++.|+.|++++|.+++ +|.. ..+|+.|++++|+++.+ |+.+.++++|+.|+|++|++++..+..
T Consensus 401 -----------~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 401 -----------PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred -----------ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccccc-ChHHhhccCCCeEECCCCCCCchHHHH
Confidence 1256666666666664 3332 23566677777777643 555666777777777777776655554
Q ss_pred c
Q 005168 581 L 581 (710)
Q Consensus 581 l 581 (710)
+
T Consensus 465 L 465 (788)
T PRK15387 465 L 465 (788)
T ss_pred H
Confidence 4
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=7.3e-19 Score=195.97 Aligned_cols=120 Identities=25% Similarity=0.319 Sum_probs=67.1
Q ss_pred CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEE
Q 005168 230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLM 309 (710)
Q Consensus 230 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~ 309 (710)
+...|+++++.++ .+|..+. +.++.|++++|+++. +|..+. ++|++|++++|.++ .+|..++ ++|+.|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP---EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence 3456666666666 5665442 366667777766663 333322 46677777777666 5665443 3566666
Q ss_pred ccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCccc
Q 005168 310 LSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGS 377 (710)
Q Consensus 310 Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~ 377 (710)
+++|.+.. +|..+. ++|+.|++++|++.. +|..+. ++|+.|++++|+++++
T Consensus 248 Ls~N~L~~------------LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~L 298 (754)
T PRK15370 248 LSINRITE------------LPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTL 298 (754)
T ss_pred CcCCccCc------------CChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccC
Confidence 66665542 333332 356666666666653 343332 3566666666666543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=4.9e-18 Score=189.39 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=19.1
Q ss_pred CCccEEecCCCcccccCCcccCCCCCCCEEEccCCccc
Q 005168 422 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH 459 (710)
Q Consensus 422 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 459 (710)
++|+.|++++|+++ .+|..+ .++|+.|++++|+++
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence 45666666666655 233333 245666666666655
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.5e-18 Score=180.30 Aligned_cols=61 Identities=26% Similarity=0.371 Sum_probs=32.7
Q ss_pred CCCCEEeCCCccCCCC----CchhhcCCccCCEEeCcCCcCccc----CCcccccC-CCCCEEeccCCcc
Q 005168 537 TRIQTLNLSYNNLTGL----IPSTFSNLKHIESLDLSYNKLNGK----IPHQLVEL-KTLEVFSVAYNNL 597 (710)
Q Consensus 537 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~l~~l-~~L~~L~l~~N~l 597 (710)
+.|++|++++|.++.. ....+..+++|+.+++++|.+... ....+... +.++.+++.+|+|
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 5666666666666521 123444455666666666666632 22223333 5566666666654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=1.1e-17 Score=173.70 Aligned_cols=266 Identities=23% Similarity=0.207 Sum_probs=162.0
Q ss_pred EEEccCCcCcc-cCCccCcCCCCCCEEeccCCccCCc----CChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCc
Q 005168 258 VFNISMNALDG-SIPSSFGNMKFLQLLDLSNNQLTGE----IPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG 332 (710)
Q Consensus 258 ~L~L~~n~i~~-~~~~~f~~l~~L~~L~Ls~n~l~~~----i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~ 332 (710)
.|+|..+.+++ .....|..+..|+.|+++++.++.. ++.. ....+++++++++++.+.. ........+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~-----~~~~~~~~~~ 75 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGR-----IPRGLQSLLQ 75 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCC-----cchHHHHHHH
Confidence 45666666652 2334456667788888888877521 2222 2245668888877766541 0000112234
Q ss_pred cccCCCccceeeCccCccccccchhhcCCCC---CCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCcc
Q 005168 333 WLGNLTWLIHIIMPENHLEGPIPVEFCQLYS---LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNL 409 (710)
Q Consensus 333 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~ 409 (710)
.+..+++|++|++++|.+....+..+..+.+ |++|++++|++.+....
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~----------------------------- 126 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR----------------------------- 126 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH-----------------------------
Confidence 4556677777777777766544555544444 77777766665421000
Q ss_pred CcccCChhhhcC-CCccEEecCCCccccc----CCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccc
Q 005168 410 LNGSIPDWIGEL-SQLSHLILGHNNLEGE----VPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEK 484 (710)
Q Consensus 410 ~~~~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (710)
.+...+..+ ++|+.|++++|.+++. .+..+..+++|++|++++|.+++.....+..
T Consensus 127 ---~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~---------------- 187 (319)
T cd00116 127 ---LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE---------------- 187 (319)
T ss_pred ---HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH----------------
Confidence 112233444 6778888888777632 2334566677888888888776311100000
Q ss_pred cccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCC----CccccccCCCCEEeCCCccCCCCCchhhc--
Q 005168 485 FEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHI----PPQIGNLTRIQTLNLSYNNLTGLIPSTFS-- 558 (710)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-- 558 (710)
.....++|+.|++++|.+++.. +..+..+++|++|++++|.+++.....+.
T Consensus 188 -----------------------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~ 244 (319)
T cd00116 188 -----------------------GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA 244 (319)
T ss_pred -----------------------HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHH
Confidence 0001247888888888876433 33456788999999999998864333322
Q ss_pred ---CCccCCEEeCcCCcCcc----cCCcccccCCCCCEEeccCCccccc
Q 005168 559 ---NLKHIESLDLSYNKLNG----KIPHQLVELKTLEVFSVAYNNLSGE 600 (710)
Q Consensus 559 ---~l~~L~~L~Ls~N~i~~----~~~~~l~~l~~L~~L~l~~N~l~~~ 600 (710)
..+.|++|++++|.++. .+...+..+++|+.+++++|.+...
T Consensus 245 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 23799999999999972 3344566678999999999999854
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=6.8e-18 Score=145.57 Aligned_cols=182 Identities=29% Similarity=0.481 Sum_probs=134.6
Q ss_pred CCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCc
Q 005168 361 LYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPV 440 (710)
Q Consensus 361 l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 440 (710)
+...+.|.+|+|+++.++|..-.+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. +.|.
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--------------~lp~~issl~klr~lnvgmnrl~-~lpr 96 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--------------ELPTSISSLPKLRILNVGMNRLN-ILPR 96 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--------------hcChhhhhchhhhheecchhhhh-cCcc
Confidence 33444455555555554444444455555544444443 66777888999999999999998 7899
Q ss_pred ccCCCCCCCEEEccCCccccc-CCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEE
Q 005168 441 QLCELNQLQLLDLSNNSLHGS-IPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLY 519 (710)
Q Consensus 441 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 519 (710)
.|+.++.|+.||+.+|++.+. .|..|-. +..|+.|+
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~-------------------------------------------m~tlraly 133 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFY-------------------------------------------MTTLRALY 133 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhH-------------------------------------------HHHHHHHH
Confidence 999999999999999998753 4555543 34788899
Q ss_pred CcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCC---CCCEEeccCCc
Q 005168 520 LSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK---TLEVFSVAYNN 596 (710)
Q Consensus 520 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~---~L~~L~l~~N~ 596 (710)
|+.|.+. .+|..++.+++|+.|.+.+|.+-.+ |..++.++.|++|++.+|+++ .+|..++.+. +=+.+.+.+||
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NP 210 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENP 210 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCC
Confidence 9999998 7888899999999999999998744 678899999999999999999 5665555543 23456677888
Q ss_pred cccccCC
Q 005168 597 LSGEILE 603 (710)
Q Consensus 597 l~~~~~~ 603 (710)
|...+.+
T Consensus 211 wv~pIae 217 (264)
T KOG0617|consen 211 WVNPIAE 217 (264)
T ss_pred CCChHHH
Confidence 8766543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=2.1e-17 Score=142.62 Aligned_cols=183 Identities=28% Similarity=0.431 Sum_probs=151.7
Q ss_pred CCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCc
Q 005168 378 LPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNS 457 (710)
Q Consensus 378 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 457 (710)
.++.|.+..+++|.+++|.++ .+|..++.+.+|+.|++++|+++ ..|.+++.+++|+.|+++-|.
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~--------------~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnr 90 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT--------------VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNR 90 (264)
T ss_pred cccccchhhhhhhhcccCcee--------------ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhh
Confidence 345566778888888888776 67777899999999999999998 677789999999999999999
Q ss_pred ccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCC-CCCcccccc
Q 005168 458 LHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG-HIPPQIGNL 536 (710)
Q Consensus 458 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l 536 (710)
+. ..|..|+. +|.|+.|||.+|.+.. ..|+.|..+
T Consensus 91 l~-~lprgfgs-------------------------------------------~p~levldltynnl~e~~lpgnff~m 126 (264)
T KOG0617|consen 91 LN-ILPRGFGS-------------------------------------------FPALEVLDLTYNNLNENSLPGNFFYM 126 (264)
T ss_pred hh-cCccccCC-------------------------------------------CchhhhhhccccccccccCCcchhHH
Confidence 86 77888876 5589999999998865 578899999
Q ss_pred CCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCcccccc---CCc
Q 005168 537 TRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFAT---FNK 613 (710)
Q Consensus 537 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~---~~~ 613 (710)
+.|+.|+|++|.+. +.|..++++++|+.|.+.+|.+. .+|..+..+++|+.|.+.+|.++-..|+ +..+.. -..
T Consensus 127 ~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~l~~~k~v 203 (264)
T KOG0617|consen 127 TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLDLVGNKQV 203 (264)
T ss_pred HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhhhhhhHHH
Confidence 99999999999998 55667899999999999999998 7888999999999999999999976665 344322 123
Q ss_pred ccccCCCCC
Q 005168 614 SSYEGNTFL 622 (710)
Q Consensus 614 ~~~~~n~~~ 622 (710)
...+.|||.
T Consensus 204 ~r~E~NPwv 212 (264)
T KOG0617|consen 204 MRMEENPWV 212 (264)
T ss_pred HhhhhCCCC
Confidence 345566664
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.44 E-value=4.7e-13 Score=149.36 Aligned_cols=118 Identities=35% Similarity=0.585 Sum_probs=106.0
Q ss_pred cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEecc
Q 005168 514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA 593 (710)
Q Consensus 514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~ 593 (710)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCcccc-ccCCcccccCCCCCCCCCC-CCCC
Q 005168 594 YNNLSGEILEWTAQF-ATFNKSSYEGNTFLCGLPL-PICR 631 (710)
Q Consensus 594 ~N~l~~~~~~~~~~~-~~~~~~~~~~n~~~c~~~~-~~c~ 631 (710)
+|++++.+|..+... .......+.+|+..|+.|. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999876543 3455677899999998654 2563
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=3.5e-12 Score=120.38 Aligned_cols=132 Identities=27% Similarity=0.270 Sum_probs=107.8
Q ss_pred CCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceee
Q 005168 421 LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTT 500 (710)
Q Consensus 421 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (710)
...|++++|++|.|+ .+..+..-.+.++.|++|+|.+..+-. +.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--La--------------------------------- 326 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--LA--------------------------------- 326 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--hh---------------------------------
Confidence 467999999999998 455667788999999999999874322 21
Q ss_pred ccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC-c
Q 005168 501 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP-H 579 (710)
Q Consensus 501 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~ 579 (710)
.+++|+.||||+|.++. ..++-..+.+.++|.|+.|.|..+ ..++.+-+|..||+++|+|..... .
T Consensus 327 ----------~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~ 393 (490)
T KOG1259|consen 327 ----------ELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVN 393 (490)
T ss_pred ----------hcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhc
Confidence 25689999999999984 444556788999999999999877 678888999999999999985433 3
Q ss_pred ccccCCCCCEEeccCCcccccc
Q 005168 580 QLVELKTLEVFSVAYNNLSGEI 601 (710)
Q Consensus 580 ~l~~l~~L~~L~l~~N~l~~~~ 601 (710)
.+.++|.|+.+.+.+||+....
T Consensus 394 ~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 394 HIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ccccccHHHHHhhcCCCccccc
Confidence 5788999999999999998754
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=6.3e-11 Score=108.05 Aligned_cols=130 Identities=29% Similarity=0.316 Sum_probs=48.4
Q ss_pred cCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCC
Q 005168 226 HSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNL 305 (710)
Q Consensus 226 ~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L 305 (710)
.++.++++|+|++|.|+ .+. .+...+.+|+.|++++|.|+.+. .+..++.|++|++++|+|+ .++..+...+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 34456777888888877 554 34334667888888888887553 4777888888888888887 6765554467888
Q ss_pred cEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccccc---chhhcCCCCCCEEECC
Q 005168 306 QFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI---PVEFCQLYSLQILDIS 370 (710)
Q Consensus 306 ~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~ls 370 (710)
++|++++|.+.+. . .-..++.+++|+.|++.+|.+.... ...+..+|+|+.||-.
T Consensus 91 ~~L~L~~N~I~~l--------~--~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDL--------N--ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SC--------C--CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCCh--------H--HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 8888888887641 1 1234667788888888888776431 2336677888887754
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=3.8e-12 Score=130.37 Aligned_cols=78 Identities=26% Similarity=0.427 Sum_probs=40.7
Q ss_pred cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccccc---CCCCCEE
Q 005168 514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE---LKTLEVF 590 (710)
Q Consensus 514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~---l~~L~~L 590 (710)
+|+.|.+..|++. ..|..+. --.|..||+|+|+++.+ |-.|..++.|++|-|.+|.+. ..|..+.- ..=.++|
T Consensus 190 slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis~i-Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL 265 (722)
T KOG0532|consen 190 SLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKISYL-PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYL 265 (722)
T ss_pred HHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCceeec-chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeee
Confidence 3444444444443 2333333 23466677777777643 556667777777777777776 44544322 1223455
Q ss_pred eccCC
Q 005168 591 SVAYN 595 (710)
Q Consensus 591 ~l~~N 595 (710)
+..-+
T Consensus 266 ~~qA~ 270 (722)
T KOG0532|consen 266 STQAC 270 (722)
T ss_pred cchhc
Confidence 55544
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=4e-10 Score=120.47 Aligned_cols=59 Identities=32% Similarity=0.407 Sum_probs=23.8
Q ss_pred CccEEEccCCcCcccCCccCcCCC-CCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCc
Q 005168 255 SLYVFNISMNALDGSIPSSFGNMK-FLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK 316 (710)
Q Consensus 255 ~L~~L~L~~n~i~~~~~~~f~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~ 316 (710)
.++.|++.+|.++.+. .....+. +|+.|++++|.+. .+|..+. .+++|+.|++++|++.
T Consensus 117 ~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 117 NLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDLS 176 (394)
T ss_pred ceeEEecCCcccccCc-cccccchhhcccccccccchh-hhhhhhh-ccccccccccCCchhh
Confidence 4444444444444222 2222221 4444444444444 3332222 3444444444444443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=1.5e-11 Score=126.10 Aligned_cols=194 Identities=27% Similarity=0.424 Sum_probs=143.5
Q ss_pred CCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcE
Q 005168 228 HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF 307 (710)
Q Consensus 228 ~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~ 307 (710)
+..-...|++.|.+. .+|..+.. +..|+.+.|..|.+. .+|.++.++..|+.|||+.|+++ .+|..++ .--|+.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKV 147 (722)
T ss_pred ccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCccee
Confidence 344456788888887 88887765 568888888888887 66777888888888888888888 7888776 235778
Q ss_pred EEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCc
Q 005168 308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSI 387 (710)
Q Consensus 308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L 387 (710)
|-+++|+++ .+|..++.+..|..|+.+.|.+. ..|..+.++.+|+.|++..|++...++... ...|
T Consensus 148 li~sNNkl~------------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpL 213 (722)
T KOG0532|consen 148 LIVSNNKLT------------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPL 213 (722)
T ss_pred EEEecCccc------------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCce
Confidence 887777776 46777778888888888888877 456667888888888888888876665544 5567
Q ss_pred ceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCC---CCCCEEEccCC
Q 005168 388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCEL---NQLQLLDLSNN 456 (710)
Q Consensus 388 ~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n 456 (710)
.+||++.|++. .+|-.|..|..|++|-|.+|.+. .+|..++-. .=.++|+..-+
T Consensus 214 i~lDfScNkis--------------~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 214 IRLDFSCNKIS--------------YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeecccCcee--------------ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 77766666655 67777888888888888888887 455544332 23466666665
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=1.7e-10 Score=105.24 Aligned_cols=115 Identities=30% Similarity=0.469 Sum_probs=34.9
Q ss_pred cCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhc-CCCCCCEEeCCCCCCC------CcccccEEecCCCccee
Q 005168 4 LSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFD-SLRDLEELDIGENKID------KFVVSKELYLDDTGFKG 76 (710)
Q Consensus 4 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~-~l~~L~~L~Ls~n~l~------~l~~l~~L~L~~~~~~~ 76 (710)
|+.+-|+.+. .+.+..++++|+|.+|.|+ .|+ .++ .+.+|+.|+|++|.|+ .++.|++|++++|.++
T Consensus 4 lt~~~i~~~~--~~~n~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~- 77 (175)
T PF14580_consen 4 LTANMIEQIA--QYNNPVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRIS- 77 (175)
T ss_dssp -------------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS----
T ss_pred cccccccccc--ccccccccccccccccccc-ccc--chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCC-
Confidence 4445555322 2455667888888888887 564 455 5788888888888776 3455566666666665
Q ss_pred ecCHHhh-cCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCccc
Q 005168 77 TLDIREF-DSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMN 141 (710)
Q Consensus 77 ~i~~~~~-~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~ 141 (710)
.+.. .+ ..+|+|++|++++|+|..+ .....+..+++|+.|++.+|++.
T Consensus 78 ~i~~-~l~~~lp~L~~L~L~~N~I~~l----------------~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 78 SISE-GLDKNLPNLQELYLSNNKISDL----------------NELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp S-CH-HHHHH-TT--EEE-TTS---SC----------------CCCGGGGG-TT--EEE-TT-GGG
T ss_pred cccc-chHHhCCcCCEEECcCCcCCCh----------------HHhHHHHcCCCcceeeccCCccc
Confidence 4544 33 3567777777777766653 23345677888888888888775
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=4.6e-10 Score=120.03 Aligned_cols=136 Identities=35% Similarity=0.482 Sum_probs=75.4
Q ss_pred hhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCC
Q 005168 416 DWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQ 495 (710)
Q Consensus 416 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (710)
..+..+++|+.|++++|++.. .+......+.|+.|++++|.+....+. ...
T Consensus 157 ~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~--------------------------- 207 (394)
T COG4886 157 SPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISDLPPE-IEL--------------------------- 207 (394)
T ss_pred hhhhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCccccCchh-hhh---------------------------
Confidence 334556666666666666662 333333556666666666666532221 100
Q ss_pred cceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcc
Q 005168 496 GDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 575 (710)
Q Consensus 496 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 575 (710)
+..|+++.+++|.+. ..+..+..+.++..+.+.+|++..+ +..++.++++++|++++|.++.
T Consensus 208 ----------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 208 ----------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred ----------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceeccccccccc
Confidence 224666666666433 2444555666666666666666543 3455566666666666666663
Q ss_pred cCCcccccCCCCCEEeccCCccccc
Q 005168 576 KIPHQLVELKTLEVFSVAYNNLSGE 600 (710)
Q Consensus 576 ~~~~~l~~l~~L~~L~l~~N~l~~~ 600 (710)
..+ +..+.+++.|++++|.+...
T Consensus 270 i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 270 ISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccc--ccccCccCEEeccCcccccc
Confidence 322 55666666666666666543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.2e-11 Score=118.58 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=28.2
Q ss_pred cCCCccEEecCCCcccccC-CcccCCCCCCCEEEccCCcccc
Q 005168 420 ELSQLSHLILGHNNLEGEV-PVQLCELNQLQLLDLSNNSLHG 460 (710)
Q Consensus 420 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~ 460 (710)
..++|++|+++.|++..+. -..+..+++|+.|.+..|.++.
T Consensus 299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 3578888888888885332 1234556778888888887763
No 32
>PLN03150 hypothetical protein; Provisional
Probab=98.97 E-value=1e-09 Score=122.69 Aligned_cols=114 Identities=32% Similarity=0.492 Sum_probs=102.8
Q ss_pred CCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCC
Q 005168 447 QLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLI 526 (710)
Q Consensus 447 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 526 (710)
.++.|+|++|.+.+.+|..+..+ ++|+.|+|++|.+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L-------------------------------------------~~L~~L~Ls~N~l~ 455 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKL-------------------------------------------RHLQSINLSGNSIR 455 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCC-------------------------------------------CCCCEEECCCCccc
Confidence 37889999999999888877664 48999999999999
Q ss_pred CCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccC-CCCCEEeccCCccccccCC
Q 005168 527 GHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEILE 603 (710)
Q Consensus 527 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~ 603 (710)
+.+|..+..+++|+.|+|++|.+++.+|+.+.++++|+.|+|++|++++.+|..+... .++..+++.+|+..|..|.
T Consensus 456 g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 456 GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999988764 5678899999998886553
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.97 E-value=6.6e-11 Score=114.74 Aligned_cols=204 Identities=19% Similarity=0.194 Sum_probs=111.4
Q ss_pred CCCCcccEEEecCCCCCCCccCh----hccCCCCCCEEEccCCc---CcccCChhH------hhcCCCCcEEEccCCccc
Q 005168 152 APNFQLQSLSLSSSYGDGVTFPK----FLYHQHDLEYVRLSHIK---MNGEFPNWL------LENNTKLATLFLVNDSLA 218 (710)
Q Consensus 152 ~~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~ls~~~---~~~~~~~~~------~~~l~~L~~L~l~~~~~~ 218 (710)
.+...+.++++ +++.++....+ .+.+.++|+..++|+-. ....+|..+ ...+++|+.|+|++|.+.
T Consensus 27 ~~~~s~~~l~l-sgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDL-SGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEec-cCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34446677777 55555444333 33455666666666431 112233321 123345555555555544
Q ss_pred ccCccC----ccCCCCCCEEEcccCcCcccCChh-hhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCc
Q 005168 219 GPFWLP----IHSHKRLGILDISNNNIRGHIPVE-IGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE 293 (710)
Q Consensus 219 ~~~~~~----~~~~~~L~~L~ls~n~i~~~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~ 293 (710)
...+.. +.++..|++|.|.+|.+. ..... ++. .|..|. .......-+.|+++...+|++. .
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~---al~~l~---------~~kk~~~~~~Lrv~i~~rNrle-n 171 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGR---ALFELA---------VNKKAASKPKLRVFICGRNRLE-N 171 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHH---HHHHHH---------HHhccCCCcceEEEEeeccccc-c
Confidence 322222 233444555555555443 11110 010 111111 0112234467888888888886 4
Q ss_pred CC----hhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccc----cchhhcCCCCCC
Q 005168 294 IP----EHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP----IPVEFCQLYSLQ 365 (710)
Q Consensus 294 i~----~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~ 365 (710)
-+ ..+|+..+.|+.+.++.|.|.. ..+ ......|..+++|+.|+|.+|.++.. ....++.+++|+
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~------eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRP------EGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccC------chh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 43 2446667888888888887653 111 12345678889999999999887643 456678888899
Q ss_pred EEECCCCcCccc
Q 005168 366 ILDISDNNISGS 377 (710)
Q Consensus 366 ~L~ls~n~i~~~ 377 (710)
.|++++|.+..-
T Consensus 245 El~l~dcll~~~ 256 (382)
T KOG1909|consen 245 ELNLGDCLLENE 256 (382)
T ss_pred eecccccccccc
Confidence 999999887643
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.4e-10 Score=115.48 Aligned_cols=212 Identities=20% Similarity=0.126 Sum_probs=121.9
Q ss_pred CcccccEEecCCCcceeecCHHhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCc
Q 005168 60 KFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQ 139 (710)
Q Consensus 60 ~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~ 139 (710)
++.+|+++.|.++........+....|++++.||||.|-|+.. ..-......+++|+.|+++.|.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw---------------~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW---------------FPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH---------------HHHHHHHHhcccchhccccccc
Confidence 4455555555565554221113566788888888888866543 0000112334444444444444
Q ss_pred ccccccccccCCCCCCcccEEEecCCCCCCCcc-ChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCccc
Q 005168 140 MNAEITESHSLTAPNFQLQSLSLSSSYGDGVTF-PKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLA 218 (710)
Q Consensus 140 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 218 (710)
+.......... ..++++.|.+ +.|+++..- ...+..+|+|+.|++..|......... ...+..|++|+|++|.+.
T Consensus 184 l~~~~~s~~~~--~l~~lK~L~l-~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 184 LSNFISSNTTL--LLSHLKQLVL-NSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI 259 (505)
T ss_pred ccCCccccchh--hhhhhheEEe-ccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccc
Confidence 33222111111 2236677777 666655332 233457788888888877422111111 145677888888888765
Q ss_pred ccCc-cCccCCCCCCEEEcccCcCcccCC--hh----hhhcCCCccEEEccCCcCccc-CCccCcCCCCCCEEeccCCcc
Q 005168 219 GPFW-LPIHSHKRLGILDISNNNIRGHIP--VE----IGDVLPSLYVFNISMNALDGS-IPSSFGNMKFLQLLDLSNNQL 290 (710)
Q Consensus 219 ~~~~-~~~~~~~~L~~L~ls~n~i~~~~~--~~----~~~~~~~L~~L~L~~n~i~~~-~~~~f~~l~~L~~L~Ls~n~l 290 (710)
.... ...+.++.|+.|.++.+++. .+. +. ....+++|++|++..|+|... .-..+..+++|+.|.+..|.+
T Consensus 260 ~~~~~~~~~~l~~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 260 DFDQGYKVGTLPGLNQLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccccccccccccchhhhhccccCcc-hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 4322 34567888888888888877 332 11 123478999999999998532 113445667888888888888
Q ss_pred C
Q 005168 291 T 291 (710)
Q Consensus 291 ~ 291 (710)
+
T Consensus 339 n 339 (505)
T KOG3207|consen 339 N 339 (505)
T ss_pred c
Confidence 6
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1.6e-10 Score=109.26 Aligned_cols=121 Identities=25% Similarity=0.295 Sum_probs=85.7
Q ss_pred CeecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCH
Q 005168 1 MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI 80 (710)
Q Consensus 1 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~ 80 (710)
+||||+|.|+ ...++..-.|.+++|++|+|.|. .+. .+..+++|++||||+|.++ .+..
T Consensus 288 elDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls-----------------~~~G 346 (490)
T KOG1259|consen 288 ELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLA-----------------ECVG 346 (490)
T ss_pred hccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhH-----------------hhhh
Confidence 4788888888 55566777888888888888887 554 4888888888888888876 2222
Q ss_pred HhhcCCCCCCEEEccCCcCCCC------CCCcEEEccccccccccCcccccCCCCCcEEEccCCccccc
Q 005168 81 REFDSFNNLEVLDMSYNKIDNL------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAE 143 (710)
Q Consensus 81 ~~~~~l~~L~~L~Ls~n~l~~~------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~ 143 (710)
.-.++-+.++|.|+.|.+..+ -+|..||+++|++...-....++++|.|+.+.|.+|++...
T Consensus 347 -wh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 347 -WHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred -hHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 334555666666666654433 45566666666666544556688899999999999987543
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.93 E-value=3.7e-10 Score=109.61 Aligned_cols=207 Identities=18% Similarity=0.166 Sum_probs=119.9
Q ss_pred hhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEE
Q 005168 82 EFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLS 161 (710)
Q Consensus 82 ~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~ 161 (710)
++..+|+|++|+||.|.|..- .+. .-...+.++..|++|.|.+|.+.......+.. -|.++.
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~-----------g~~--~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~-----al~~l~ 148 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPK-----------GIR--GLEELLSSCTDLEELYLNNCGLGPEAGGRLGR-----ALFELA 148 (382)
T ss_pred HHhcCCceeEeeccccccCcc-----------chH--HHHHHHHhccCHHHHhhhcCCCChhHHHHHHH-----HHHHHH
Confidence 456677888888888876532 001 01122456777888888887765443222100 011111
Q ss_pred ecCCCCCCCccChhccCCCCCCEEEccCCcCcccCCh---hHhhcCCCCcEEEccCCccccc----CccCccCCCCCCEE
Q 005168 162 LSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPN---WLLENNTKLATLFLVNDSLAGP----FWLPIHSHKRLGIL 234 (710)
Q Consensus 162 l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L 234 (710)
..+....-+.|+++...+|++-+.... ..++..+.|+.+.+..|.|... ....+..+++|++|
T Consensus 149 ----------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevL 218 (382)
T KOG1909|consen 149 ----------VNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVL 218 (382)
T ss_pred ----------HHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceee
Confidence 111223446677777777766543221 2345567777777777776532 22456778888888
Q ss_pred EcccCcCcccCChhhh---hcCCCccEEEccCCcCcccCCccC-----cCCCCCCEEeccCCccCCcC---ChhhhcCCC
Q 005168 235 DISNNNIRGHIPVEIG---DVLPSLYVFNISMNALDGSIPSSF-----GNMKFLQLLDLSNNQLTGEI---PEHLAVGCV 303 (710)
Q Consensus 235 ~ls~n~i~~~~~~~~~---~~~~~L~~L~L~~n~i~~~~~~~f-----~~l~~L~~L~Ls~n~l~~~i---~~~~~~~l~ 303 (710)
||.+|-++......+. ..++.|++|++++|.+......+| ...++|++|.+.+|.++..- -.......+
T Consensus 219 dl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~ 298 (382)
T KOG1909|consen 219 DLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKP 298 (382)
T ss_pred ecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcch
Confidence 8888877633222221 225678888888888776544333 24678888888888776211 111122467
Q ss_pred CCcEEEccCCCCc
Q 005168 304 NLQFLMLSNNSLK 316 (710)
Q Consensus 304 ~L~~L~Ls~n~l~ 316 (710)
.|+.|+|++|++.
T Consensus 299 dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 299 DLEKLNLNGNRLG 311 (382)
T ss_pred hhHHhcCCccccc
Confidence 8888888888874
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=7.1e-10 Score=83.05 Aligned_cols=59 Identities=39% Similarity=0.620 Sum_probs=28.9
Q ss_pred CCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCc
Q 005168 538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNN 596 (710)
Q Consensus 538 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~ 596 (710)
+|++|++++|+++.+.+++|.++++|++|++++|+++...|+.|..+++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444444444444445555555555555544444444455555555555444
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=6.3e-10 Score=83.33 Aligned_cols=61 Identities=48% Similarity=0.610 Sum_probs=58.2
Q ss_pred ccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcC
Q 005168 513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 573 (710)
Q Consensus 513 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i 573 (710)
|+|+.|++++|+++...+..|.++++|++|++++|+++.+.+++|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4799999999999988889999999999999999999999999999999999999999986
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=3.7e-10 Score=120.86 Aligned_cols=247 Identities=29% Similarity=0.302 Sum_probs=137.5
Q ss_pred CCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCc
Q 005168 253 LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG 332 (710)
Q Consensus 253 ~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~ 332 (710)
+..++.+.++.|.+..+ -..+..+++|+.|++.+|.|. .+... ...+++|++|++++|.|.. -.
T Consensus 71 l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~-------------i~ 134 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITK-------------LE 134 (414)
T ss_pred hHhHHhhccchhhhhhh-hcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccc-------------cc
Confidence 34555555666655531 123455566666666666665 34332 1235666666666666553 12
Q ss_pred cccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcc
Q 005168 333 WLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 412 (710)
Q Consensus 333 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~ 412 (710)
.+..++.|+.|++++|.+... ..+..+..|+.+++++|++..+...
T Consensus 135 ~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~-------------------------------- 180 (414)
T KOG0531|consen 135 GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEND-------------------------------- 180 (414)
T ss_pred chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhh--------------------------------
Confidence 234445566666666666632 2344466677777777766643321
Q ss_pred cCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeec
Q 005168 413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE 492 (710)
Q Consensus 413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (710)
. ...+.+++.+++.+|.+..+ ..+..+..+..+++..|.++..-+...
T Consensus 181 ---~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~-------------------------- 228 (414)
T KOG0531|consen 181 ---E-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLNE-------------------------- 228 (414)
T ss_pred ---h-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCccc--------------------------
Confidence 0 12345556666666655422 223333344444566665543221100
Q ss_pred CCCcceeeccccceecccccc--cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcC
Q 005168 493 GPQGDFTTKNIAYIYQGKVLS--LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 570 (710)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 570 (710)
+. .|+.+++++|.+.. .+..+..+..+..|++++|++..+ ..+...+.+..+....
T Consensus 229 -------------------~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 229 -------------------LVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLND 286 (414)
T ss_pred -------------------chhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCc
Confidence 11 26677777777663 224566677888888888888766 4456667777777777
Q ss_pred CcCcc---cCCcc-cccCCCCCEEeccCCccccccCC
Q 005168 571 NKLNG---KIPHQ-LVELKTLEVFSVAYNNLSGEILE 603 (710)
Q Consensus 571 N~i~~---~~~~~-l~~l~~L~~L~l~~N~l~~~~~~ 603 (710)
|.+.. ..... ....+.+..+.+.+|+.....+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 287 NKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred chhcchhhhhccccccccccccccccccCcccccccc
Confidence 77662 22221 44567788888888887765543
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=3.5e-08 Score=112.89 Aligned_cols=57 Identities=28% Similarity=0.457 Sum_probs=34.5
Q ss_pred cccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCC-CchhhcCCccCCEEeC
Q 005168 512 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDL 568 (710)
Q Consensus 512 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L 568 (710)
+++|+.|.+..+.....+......+..+.++.+..+.+.+. .-...++++++..+.+
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l 826 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL 826 (889)
T ss_pred cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc
Confidence 56788888887776655555556666666666666666655 2333444444444433
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.60 E-value=3.6e-08 Score=112.78 Aligned_cols=127 Identities=28% Similarity=0.397 Sum_probs=62.4
Q ss_pred CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCc--CcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcE
Q 005168 230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNA--LDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF 307 (710)
Q Consensus 230 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~--i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~ 307 (710)
..+...+-+|.+. .++.... .++|++|-+.+|. +..+....|..++.|++|||++|.--+.+|..+. ++-+|++
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~~--~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~Li~Lry 599 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSSE--NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-ELVHLRY 599 (889)
T ss_pred heeEEEEeccchh-hccCCCC--CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-hhhhhhc
Confidence 3444455445444 3333332 2345555555553 3333333455555555555555533335555554 3555555
Q ss_pred EEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCC
Q 005168 308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDN 372 (710)
Q Consensus 308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 372 (710)
|++++..+. .+|..++++..|.+|++..+......+.....+.+|++|.+...
T Consensus 600 L~L~~t~I~------------~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 600 LDLSDTGIS------------HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccCCCcc------------ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 555555544 24555555555555555555443334444455555555555443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.58 E-value=7.2e-09 Score=110.94 Aligned_cols=218 Identities=27% Similarity=0.249 Sum_probs=125.5
Q ss_pred CCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCC
Q 005168 301 GCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPS 380 (710)
Q Consensus 301 ~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~ 380 (710)
.+..++.+.+..|.+.+ +...+..+.+|+.|++.+|.+..+.. .+..+++|++|++++|.|+.+.+-
T Consensus 70 ~l~~l~~l~l~~n~i~~------------~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l 136 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK------------ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGL 136 (414)
T ss_pred HhHhHHhhccchhhhhh------------hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccccch
Confidence 46677777777777653 23346777888888898888885433 266788888888888888865432
Q ss_pred CCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCC-cccCCCCCCCEEEccCCccc
Q 005168 381 CFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNSLH 459 (710)
Q Consensus 381 ~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 459 (710)
.. +..|+.|++++|.+... ..+..+..|+.+++++|+++.+.+ . ...+.+++.+++.+|.+.
T Consensus 137 ~~-l~~L~~L~l~~N~i~~~---------------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 137 ST-LTLLKELNLSGNLISDI---------------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hh-ccchhhheeccCcchhc---------------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 22 33466666666665521 112335666667777776664433 1 355666666666666654
Q ss_pred ccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccC--
Q 005168 460 GSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLT-- 537 (710)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-- 537 (710)
....... ...+..+++..|.++...+ +..+.
T Consensus 200 ~i~~~~~---------------------------------------------~~~l~~~~l~~n~i~~~~~--l~~~~~~ 232 (414)
T KOG0531|consen 200 EIEGLDL---------------------------------------------LKKLVLLSLLDNKISKLEG--LNELVML 232 (414)
T ss_pred cccchHH---------------------------------------------HHHHHHhhcccccceeccC--cccchhH
Confidence 2211110 1133344666666653322 11222
Q ss_pred CCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccc
Q 005168 538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598 (710)
Q Consensus 538 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~ 598 (710)
.|+++++++|.+.... ..+..+..++.|++.+|++...- .+...+.+..+....|++.
T Consensus 233 ~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 233 HLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred HHHHHhcccCcccccc-ccccccccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 2677777777766432 44555666777777777666322 2334445555555555554
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.49 E-value=1.7e-09 Score=114.16 Aligned_cols=42 Identities=36% Similarity=0.413 Sum_probs=19.8
Q ss_pred hhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCccc
Q 005168 416 DWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH 459 (710)
Q Consensus 416 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 459 (710)
.++.-++.++.|+|++|+++.. +.+..++.|++|||++|.+.
T Consensus 181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc
Confidence 3344444555555555555422 13444555555555555544
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3e-08 Score=94.23 Aligned_cols=154 Identities=18% Similarity=0.067 Sum_probs=93.3
Q ss_pred hhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccc-cccccCcccccCCCCCcEEEccCCcccccccccccCCC
Q 005168 82 EFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNH-FRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTA 152 (710)
Q Consensus 82 ~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~-l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 152 (710)
.+.+|.+|+.|.+.++++..- .+|+.++++.|. ++...-.-.+.+|++|..|+++++........++..-.
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi 284 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI 284 (419)
T ss_pred HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence 444555555555555554432 555566665553 22111112357888888888888877655433321111
Q ss_pred CCCcccEEEecCCCCCCC---ccChhccCCCCCCEEEccCCc-CcccCChhHhhcCCCCcEEEccCCcccccCcc---Cc
Q 005168 153 PNFQLQSLSLSSSYGDGV---TFPKFLYHQHDLEYVRLSHIK-MNGEFPNWLLENNTKLATLFLVNDSLAGPFWL---PI 225 (710)
Q Consensus 153 ~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~ 225 (710)
..+|..|++ ++|...- .+..-...+++|..||+|+|. ++......+ -.++.|++|.+++|.. +.|. .+
T Consensus 285 -se~l~~LNl-sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~lSlsRCY~--i~p~~~~~l 359 (419)
T KOG2120|consen 285 -SETLTQLNL-SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHLSLSRCYD--IIPETLLEL 359 (419)
T ss_pred -chhhhhhhh-hhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHH-HhcchheeeehhhhcC--CChHHeeee
Confidence 127888888 5554221 122233478999999999985 443333333 4789999999999863 3343 46
Q ss_pred cCCCCCCEEEcccCc
Q 005168 226 HSHKRLGILDISNNN 240 (710)
Q Consensus 226 ~~~~~L~~L~ls~n~ 240 (710)
...+.|.+|++.++-
T Consensus 360 ~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 360 NSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCcceEEEEecccc
Confidence 778999999987653
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.4e-08 Score=93.13 Aligned_cols=175 Identities=19% Similarity=0.163 Sum_probs=116.8
Q ss_pred CCCCEEEccCCcCCCC---------CCCcEEEccccccccccCcccccCCCCCcEEEccCCc-ccccccccccCCCCCCc
Q 005168 87 NNLEVLDMSYNKIDNL---------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQ-MNAEITESHSLTAPNFQ 156 (710)
Q Consensus 87 ~~L~~L~Ls~n~l~~~---------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~~~~ 156 (710)
..||++|||+..++.. ..|+.|.+.++.+...+. ..++.-..|+.++++++. ++...... .+..++.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~l--l~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQL--LLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHH--HHHhhhh
Confidence 3599999999877543 789999999998875433 346677889999999864 33222211 1234568
Q ss_pred ccEEEecCCCCCCCccChhccC-CCCCCEEEccCCcCc--ccCChhHhhcCCCCcEEEccCCc-ccccCccCccCCCCCC
Q 005168 157 LQSLSLSSSYGDGVTFPKFLYH-QHDLEYVRLSHIKMN--GEFPNWLLENNTKLATLFLVNDS-LAGPFWLPIHSHKRLG 232 (710)
Q Consensus 157 L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~ls~~~~~--~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~ 232 (710)
|.+|++++....+..+...+.+ -++|+.|++++++-. ...-..+...+|+|.+|++++|- +.......|..++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 9999994443333333333333 368999999988532 22223345789999999999875 4444445677889999
Q ss_pred EEEcccCcCcccCChhh--hhcCCCccEEEccCCcC
Q 005168 233 ILDISNNNIRGHIPVEI--GDVLPSLYVFNISMNAL 266 (710)
Q Consensus 233 ~L~ls~n~i~~~~~~~~--~~~~~~L~~L~L~~n~i 266 (710)
+|.++.|.. .+|..+ +...|.|.+|++.++--
T Consensus 342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 999998863 445443 23378899999887643
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=2.8e-07 Score=87.79 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=40.7
Q ss_pred CCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHhhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccc
Q 005168 45 LRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFR 116 (710)
Q Consensus 45 l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~ 116 (710)
..+++.+||..|.|+..+ +|.. .++++|.|++|+++-|++.+- .+|+.|-|.+..+.
T Consensus 70 ~~~v~elDL~~N~iSdWs--------------eI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWS--------------EIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred hhhhhhhhcccchhccHH--------------HHHH-HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 456666666666665111 3333 455666666666666655432 33444444444332
Q ss_pred cccCcccccCCCCCcEEEccCC
Q 005168 117 IPISLEPLFNHSRLKIFHAKNN 138 (710)
Q Consensus 117 ~~~~~~~l~~l~~L~~L~L~~n 138 (710)
-.-....+..+|.+++|+++.|
T Consensus 135 w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 135 WTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hhhhhhhhhcchhhhhhhhccc
Confidence 1112223456666677777666
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=3e-08 Score=105.04 Aligned_cols=93 Identities=29% Similarity=0.399 Sum_probs=62.5
Q ss_pred ecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcc-------cccEEecCCCcce
Q 005168 3 NLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFV-------VSKELYLDDTGFK 75 (710)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~-------~l~~L~L~~~~~~ 75 (710)
+.|+|.++ ....++.-++.|+.|||++|+++ .+ +.+..+++|++|||++|.+...+ +|+.|.+++|.++
T Consensus 170 ~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 170 SFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALT 245 (1096)
T ss_pred hcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh--HHHHhcccccccccccchhccccccchhhhhheeeeecccHHH
Confidence 56777777 66677788888888888888877 44 37778888888888888776333 2455666666654
Q ss_pred eecCHHhhcCCCCCCEEEccCCcCCCC
Q 005168 76 GTLDIREFDSFNNLEVLDMSYNKIDNL 102 (710)
Q Consensus 76 ~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 102 (710)
++ ..++++.+|+.||+++|-+.+.
T Consensus 246 -tL--~gie~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 246 -TL--RGIENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred -hh--hhHHhhhhhhccchhHhhhhcc
Confidence 22 1455666666666666655443
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=9.1e-07 Score=84.38 Aligned_cols=204 Identities=18% Similarity=0.143 Sum_probs=98.4
Q ss_pred CCCEEEccCCcCCCC----------CCCcEEEccccccccccCc-ccccCCCCCcEEEccCCcccccccccccCCCCCCc
Q 005168 88 NLEVLDMSYNKIDNL----------VVPQELRLSDNHFRIPISL-EPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQ 156 (710)
Q Consensus 88 ~L~~L~Ls~n~l~~~----------~~L~~L~L~~~~l~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~ 156 (710)
.+..+.+.++.|... +.++++||.+|.++.-..+ ..+.++|.|+.|+++.|++...+... ..+..+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l---p~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL---PLPLKN 122 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC---cccccc
Confidence 344555555555433 5666777777766531111 12456677777777776665443321 134446
Q ss_pred ccEEEecCCCCCC-CccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEE
Q 005168 157 LQSLSLSSSYGDG-VTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILD 235 (710)
Q Consensus 157 L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 235 (710)
|+.|.+ .+..+. ....+.+..+|.+++|++|.|... .+.+..+.+.. ..+.++.|+
T Consensus 123 l~~lVL-NgT~L~w~~~~s~l~~lP~vtelHmS~N~~r---------------q~n~Dd~c~e~-------~s~~v~tlh 179 (418)
T KOG2982|consen 123 LRVLVL-NGTGLSWTQSTSSLDDLPKVTELHMSDNSLR---------------QLNLDDNCIED-------WSTEVLTLH 179 (418)
T ss_pred eEEEEE-cCCCCChhhhhhhhhcchhhhhhhhccchhh---------------hhccccccccc-------cchhhhhhh
Confidence 666666 333221 112223334455555555544221 11111111111 112334444
Q ss_pred cccCcCcccCC-hhhhhcCCCccEEEccCCcCcccC-CccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCC
Q 005168 236 ISNNNIRGHIP-VEIGDVLPSLYVFNISMNALDGSI-PSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNN 313 (710)
Q Consensus 236 ls~n~i~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~-~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n 313 (710)
+..|....... ..+...+|++..+.+..|.+.+.. ...+..++.+--|+|+.|+|.+.-.-....+++.|..|.++++
T Consensus 180 ~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 180 QLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSEN 259 (418)
T ss_pred cCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCC
Confidence 44443221000 012233567777777777665432 2345556666677777777653333344556677777777766
Q ss_pred CCcC
Q 005168 314 SLKE 317 (710)
Q Consensus 314 ~l~~ 317 (710)
++.+
T Consensus 260 Pl~d 263 (418)
T KOG2982|consen 260 PLSD 263 (418)
T ss_pred cccc
Confidence 6654
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=4.1e-07 Score=85.53 Aligned_cols=94 Identities=16% Similarity=0.115 Sum_probs=60.1
Q ss_pred CCCCCCEEeccCCccCCcCChhh----hcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccc
Q 005168 276 NMKFLQLLDLSNNQLTGEIPEHL----AVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE 351 (710)
Q Consensus 276 ~l~~L~~L~Ls~n~l~~~i~~~~----~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 351 (710)
.-|.|++.+..+|++. ..|... ++.=.+|+.+.+..|.|... .++...-..+..+.+|+.|++++|.++
T Consensus 155 ~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpe------gv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 155 DKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPE------GVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcc------hhHHHHHHHHHHhCcceeeeccccchh
Confidence 3467888888888886 444322 22224777777777766520 011111122445788888888888776
Q ss_pred cc----cchhhcCCCCCCEEECCCCcCcc
Q 005168 352 GP----IPVEFCQLYSLQILDISDNNISG 376 (710)
Q Consensus 352 ~~----~~~~~~~l~~L~~L~ls~n~i~~ 376 (710)
.. ...+++.++.|+.|.+.+|-++.
T Consensus 228 ~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 228 LEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred hhhHHHHHHHhcccchhhhccccchhhcc
Confidence 43 45667788888999998887763
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=1.6e-07 Score=79.00 Aligned_cols=135 Identities=21% Similarity=0.297 Sum_probs=84.6
Q ss_pred CccEEecCCCcccccCCcc---cCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCccee
Q 005168 423 QLSHLILGHNNLEGEVPVQ---LCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFT 499 (710)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (710)
.+..++|++|++. .++++ +.....|...+|++|.+. ..|..|..
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~------------------------------- 74 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTI------------------------------- 74 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhh-------------------------------
Confidence 3556677777664 23333 344556677788888776 33333321
Q ss_pred eccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCc
Q 005168 500 TKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 579 (710)
Q Consensus 500 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~ 579 (710)
-++..+.+++++|++. .+|..+..++.|+.|+++.|.+... |..+..+.++-.|+..+|.+.. +|-
T Consensus 75 -----------kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~~na~~e-id~ 140 (177)
T KOG4579|consen 75 -----------KFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSPENARAE-IDV 140 (177)
T ss_pred -----------ccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhcCCCCcccc-CcH
Confidence 1346778888888887 4566688888888888888888744 5555568888888888887773 333
Q ss_pred ccccCCCCCEEeccCCccccccCCC
Q 005168 580 QLVELKTLEVFSVAYNNLSGEILEW 604 (710)
Q Consensus 580 ~l~~l~~L~~L~l~~N~l~~~~~~~ 604 (710)
.+..-+..-..++.++||.+.++..
T Consensus 141 dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 141 DLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred HHhccccHHHHHhcCCcccccCccc
Confidence 2322233334455667777766643
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.04 E-value=6.7e-06 Score=74.38 Aligned_cols=128 Identities=26% Similarity=0.239 Sum_probs=89.4
Q ss_pred CEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEcc
Q 005168 232 GILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLS 311 (710)
Q Consensus 232 ~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls 311 (710)
+++++.+.++. .+. ..+....+...+||++|.+... +.|..++.|.+|.+++|+|+ .|...+..-+++|..|.+.
T Consensus 22 ~e~~LR~lkip-~ie-nlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIE-NLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccc-chh-hccccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence 45566655554 222 2444456778888888888743 46778888999999999998 7877777678889999998
Q ss_pred CCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccccc---chhhcCCCCCCEEECCCCcC
Q 005168 312 NNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI---PVEFCQLYSLQILDISDNNI 374 (710)
Q Consensus 312 ~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~ls~n~i 374 (710)
+|.+.+.-| -..+..+|.|++|.+-+|.+.... .-.+..+++|++||+.+-..
T Consensus 97 nNsi~~l~d----------l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 97 NNSIQELGD----------LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred Ccchhhhhh----------cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 888875211 223667888888888888776431 12356778888888876543
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.94 E-value=6.5e-07 Score=75.44 Aligned_cols=83 Identities=23% Similarity=0.391 Sum_probs=43.6
Q ss_pred CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEE
Q 005168 230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLM 309 (710)
Q Consensus 230 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~ 309 (710)
.|+..+|++|.+. .+|..+...++.++.|++++|.|+ .+|..+..++.|+.|+++.|.+. ..|..++. +.++-.|+
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDMLD 129 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHhc
Confidence 4444555555555 555555544555555555555555 33444555555555555555555 44544443 55555555
Q ss_pred ccCCCCc
Q 005168 310 LSNNSLK 316 (710)
Q Consensus 310 Ls~n~l~ 316 (710)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 5444443
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=8.9e-06 Score=55.53 Aligned_cols=41 Identities=27% Similarity=0.507 Sum_probs=33.2
Q ss_pred CCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCccc
Q 005168 21 SSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV 63 (710)
Q Consensus 21 ~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~ 63 (710)
++|++|++++|+|+ .++ ..|++|++|+.|++++|++++++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~-~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLP-PELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-S-SHG-GHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCc-ccC-chHhCCCCCCEEEecCCCCCCCcC
Confidence 57999999999999 687 569999999999999999885443
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.92 E-value=5.6e-07 Score=89.91 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=41.8
Q ss_pred CCCCEEECCCCccccccChhhh-cCCCCCCEEeCCCCCC-C---------CcccccEEecCCCc-ceeecCHHhhcCCCC
Q 005168 21 SSLRSLNLNGNSLEGSIDVKEF-DSLRDLEELDIGENKI-D---------KFVVSKELYLDDTG-FKGTLDIREFDSFNN 88 (710)
Q Consensus 21 ~~L~~L~Ls~n~i~~~i~~~~f-~~l~~L~~L~Ls~n~l-~---------~l~~l~~L~L~~~~-~~~~i~~~~~~~l~~ 88 (710)
..|+.|.++++.-.+.-+...| .+.+++++|++.++.- + .|+++++|+|..|. ++...-...-..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4677777777653222112233 4677777777777642 2 55666666666643 222222212335666
Q ss_pred CCEEEccCC
Q 005168 89 LEVLDMSYN 97 (710)
Q Consensus 89 L~~L~Ls~n 97 (710)
|+++++|++
T Consensus 218 L~~lNlSwc 226 (483)
T KOG4341|consen 218 LKYLNLSWC 226 (483)
T ss_pred HHHhhhccC
Confidence 666666665
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.86 E-value=5.7e-06 Score=78.06 Aligned_cols=161 Identities=19% Similarity=0.124 Sum_probs=97.8
Q ss_pred hhcCCCCCCEEEccCCcCCCC------------CCCcEEEccccccccccC------------cccccCCCCCcEEEccC
Q 005168 82 EFDSFNNLEVLDMSYNKIDNL------------VVPQELRLSDNHFRIPIS------------LEPLFNHSRLKIFHAKN 137 (710)
Q Consensus 82 ~~~~l~~L~~L~Ls~n~l~~~------------~~L~~L~L~~~~l~~~~~------------~~~l~~l~~L~~L~L~~ 137 (710)
++.+||+|+.++||.|.|..- +.|.+|.+++|-+..... .....+-|.|+......
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 456667777777777765433 566777777765431111 11234567888888887
Q ss_pred Cccccccccc-ccCCCCCCcccEEEecCCCCCCCccCh-----hccCCCCCCEEEccCCcCcccCChhH---hhcCCCCc
Q 005168 138 NQMNAEITES-HSLTAPNFQLQSLSLSSSYGDGVTFPK-----FLYHQHDLEYVRLSHIKMNGEFPNWL---LENNTKLA 208 (710)
Q Consensus 138 n~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~-----~l~~~~~L~~L~ls~~~~~~~~~~~~---~~~l~~L~ 208 (710)
|.+..-.... ...+..+..|+++.+ ..+++...-.. .++.+++|+.||+.+|.++......+ ....+.|+
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki-~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKI-QQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEe-eecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 7653222111 111223358899999 66665433211 24578999999999998875443322 24557799
Q ss_pred EEEccCCcccccCccC----c--cCCCCCCEEEcccCcCcc
Q 005168 209 TLFLVNDSLAGPFWLP----I--HSHKRLGILDISNNNIRG 243 (710)
Q Consensus 209 ~L~l~~~~~~~~~~~~----~--~~~~~L~~L~ls~n~i~~ 243 (710)
+|.+.+|-+...-..+ | ...++|..|...+|.+.+
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 9999999876533222 2 235778888888887664
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.82 E-value=4e-05 Score=67.39 Aligned_cols=102 Identities=21% Similarity=0.207 Sum_probs=35.4
Q ss_pred hcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCC
Q 005168 202 ENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQ 281 (710)
Q Consensus 202 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~ 281 (710)
.++++|+.+.+.+ .+..+....|..+++++.+.+.++ +. .++...+..+++++.+.+.+ .+..+....|..+++|+
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccc
Confidence 3444444444432 233333344444444555544442 33 34444444344444444433 23223334444444455
Q ss_pred EEeccCCccCCcCChhhhcCCCCCcEEEc
Q 005168 282 LLDLSNNQLTGEIPEHLAVGCVNLQFLML 310 (710)
Q Consensus 282 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L 310 (710)
.+++..+ +. .++...|.++ +|+.+.+
T Consensus 85 ~i~~~~~-~~-~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 85 NIDIPSN-IT-EIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp EEEETTT--B-EEHTTTTTT--T--EEE-
T ss_pred ccccCcc-cc-EEchhhhcCC-CceEEEE
Confidence 4444433 33 3444444443 4444443
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=1.9e-05 Score=53.92 Aligned_cols=36 Identities=42% Similarity=0.675 Sum_probs=17.7
Q ss_pred CCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCc
Q 005168 538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574 (710)
Q Consensus 538 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~ 574 (710)
+|++|++++|+|+.+.+ .++++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 45555555555554422 3555555555555555555
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.74 E-value=4.8e-05 Score=68.99 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=41.2
Q ss_pred hhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccccccCcccccCCCCCcEEEccCCcccc
Q 005168 82 EFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNA 142 (710)
Q Consensus 82 ~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~ 142 (710)
.|.+++.|.+|.|++|+|+.+ ++|..|.|.+|.+.......++..|++|++|.+-+|++..
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence 355556666666666666554 5566666666666655566678888999999998887753
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.72 E-value=6.7e-05 Score=65.96 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=35.8
Q ss_pred CccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCC
Q 005168 224 PIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV 303 (710)
Q Consensus 224 ~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~ 303 (710)
.|..+++|+.+.+.. .+. .++...|..+++++.+.+.++ +..+...+|.++++++.+.+.. .+. .++...|..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 455555566666553 344 455555544555555555553 4444445555555555555543 333 44555555555
Q ss_pred CCcEEEcc
Q 005168 304 NLQFLMLS 311 (710)
Q Consensus 304 ~L~~L~Ls 311 (710)
+|+.+++.
T Consensus 82 ~l~~i~~~ 89 (129)
T PF13306_consen 82 NLKNIDIP 89 (129)
T ss_dssp TECEEEET
T ss_pred cccccccC
Confidence 55555553
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.00034 Score=72.24 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=6.8
Q ss_pred CCCEEECCCCcCc
Q 005168 363 SLQILDISDNNIS 375 (710)
Q Consensus 363 ~L~~L~ls~n~i~ 375 (710)
+|++|++++|...
T Consensus 157 SLk~L~Is~c~~i 169 (426)
T PRK15386 157 SLKTLSLTGCSNI 169 (426)
T ss_pred cccEEEecCCCcc
Confidence 4555555555433
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.52 E-value=5.7e-06 Score=82.85 Aligned_cols=137 Identities=18% Similarity=0.089 Sum_probs=63.3
Q ss_pred cCCCCcEEEccCCcccccCc--cCccCCCCCCEEEcccCc-CcccCChhhhhcCCCccEEEccCCcCcc--cCCccCcCC
Q 005168 203 NNTKLATLFLVNDSLAGPFW--LPIHSHKRLGILDISNNN-IRGHIPVEIGDVLPSLYVFNISMNALDG--SIPSSFGNM 277 (710)
Q Consensus 203 ~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~ls~n~-i~~~~~~~~~~~~~~L~~L~L~~n~i~~--~~~~~f~~l 277 (710)
.+..|+.|..+++.-.+..+ .--.+..+|+.|.++.++ ++..--..+....+.|+.+++..+.... .+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 34555555555543321111 112344555666555553 2211111223334566666666654321 112222356
Q ss_pred CCCCEEeccCCccCCcCC----hhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCc
Q 005168 278 KFLQLLDLSNNQLTGEIP----EHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENH 349 (710)
Q Consensus 278 ~~L~~L~Ls~n~l~~~i~----~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 349 (710)
+.|++|.++++.....-. .....++..|+.+.+++++... ......+..+++|+.+++-++.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~----------d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT----------DATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch----------HHHHHHHhhCcccceeeeechh
Confidence 667777777664321110 1111245566667766666542 1222345566677777776654
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=3.2e-05 Score=86.67 Aligned_cols=145 Identities=14% Similarity=0.123 Sum_probs=70.6
Q ss_pred ccccEEecCCCcceeecCHHhhc-CCCCCCEEEccCCcCC---------CCCCCcEEEccccccccccCcccccCCCCCc
Q 005168 62 VVSKELYLDDTGFKGTLDIREFD-SFNNLEVLDMSYNKID---------NLVVPQELRLSDNHFRIPISLEPLFNHSRLK 131 (710)
Q Consensus 62 ~~l~~L~L~~~~~~~~i~~~~~~-~l~~L~~L~Ls~n~l~---------~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~ 131 (710)
.+|++|++++...-..-.+..++ .+|+|++|.+++-.+. ++++|..||+|++.++.. ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 34455555443332222222333 3566666666664432 236666666666666522 3466777777
Q ss_pred EEEccCCcccccccccccCCCCCCcccEEEecCCCCCCCc-----cChhccCCCCCCEEEccCCcCcccCChhHhhcCCC
Q 005168 132 IFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVT-----FPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTK 206 (710)
Q Consensus 132 ~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~ 206 (710)
.|.+.+-.+.. ...+..++...+|+.||+|..-..... ..++-..+|+|+.||.|+..+...+-+.+...-++
T Consensus 199 ~L~mrnLe~e~--~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 199 VLSMRNLEFES--YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHhccCCCCCc--hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 77776654432 112223344455666665322211111 11122245666666666666665544444334444
Q ss_pred CcEEE
Q 005168 207 LATLF 211 (710)
Q Consensus 207 L~~L~ 211 (710)
|+.+.
T Consensus 277 L~~i~ 281 (699)
T KOG3665|consen 277 LQQIA 281 (699)
T ss_pred Hhhhh
Confidence 44443
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.43 E-value=5.1e-05 Score=85.08 Aligned_cols=133 Identities=21% Similarity=0.263 Sum_probs=64.8
Q ss_pred CCCCEEEccCCc-CcccCChhHhhcCCCCcEEEccCCccccc-CccCccCCCCCCEEEcccCcCcccCChhhhhcCCCcc
Q 005168 180 HDLEYVRLSHIK-MNGEFPNWLLENNTKLATLFLVNDSLAGP-FWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLY 257 (710)
Q Consensus 180 ~~L~~L~ls~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~ 257 (710)
.+|+.|++++.. +....|..+..-+|.|++|.+.+-.+... +.....++++|..||+|+.+++ .+ ..+.. +++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~-LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISR-LKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhc-cccHH
Confidence 345555555432 22233333434456666666555444321 1223445566666666666655 33 22222 55666
Q ss_pred EEEccCCcCcc-cCCccCcCCCCCCEEeccCCccCCcCChh------hhcCCCCCcEEEccCCCCc
Q 005168 258 VFNISMNALDG-SIPSSFGNMKFLQLLDLSNNQLTGEIPEH------LAVGCVNLQFLMLSNNSLK 316 (710)
Q Consensus 258 ~L~L~~n~i~~-~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~------~~~~l~~L~~L~Ls~n~l~ 316 (710)
.|.+++-.+.. ..-..+-++++|++||+|..... ..+.. ....+|+|+.||.|+..+.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence 66665544432 11112345666666666665443 22211 1224677777777766554
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.31 E-value=0.00095 Score=69.03 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=17.6
Q ss_pred CccEEecCCCcccccCCcccCCCCCCCEEEccCC
Q 005168 423 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNN 456 (710)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 456 (710)
+|+.|.++++.--...|+.+ .++|+.|++++|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 56777776643222344433 246777777766
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.57 E-value=0.0013 Score=62.70 Aligned_cols=76 Identities=26% Similarity=0.246 Sum_probs=41.1
Q ss_pred CcccccEEecCCC--cceeecCHHhhcCCCCCCEEEccCCcCCCC---------CCCcEEEccccccccccC--cccccC
Q 005168 60 KFVVSKELYLDDT--GFKGTLDIREFDSFNNLEVLDMSYNKIDNL---------VVPQELRLSDNHFRIPIS--LEPLFN 126 (710)
Q Consensus 60 ~l~~l~~L~L~~~--~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~---------~~L~~L~L~~~~l~~~~~--~~~l~~ 126 (710)
.+++|+.|.+|.| .+.+.++. ...++|+|+++++++|+++.+ .+|..|++..|..++.-. ...+.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 3444555555555 44444544 445557777777777766533 556667777665543111 112444
Q ss_pred CCCCcEEEcc
Q 005168 127 HSRLKIFHAK 136 (710)
Q Consensus 127 l~~L~~L~L~ 136 (710)
+++|++|+-.
T Consensus 142 l~~L~~LD~~ 151 (260)
T KOG2739|consen 142 LPSLKYLDGC 151 (260)
T ss_pred hhhhcccccc
Confidence 5666666543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.0002 Score=68.18 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=38.6
Q ss_pred CCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCCh-hhhcCCCCCcEEE
Q 005168 231 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPE-HLAVGCVNLQFLM 309 (710)
Q Consensus 231 L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~-~~~~~l~~L~~L~ 309 (710)
.+.|+..+++++ +..+...|+.|+.|.|+-|+|++.. .|..|++|+.|+|..|.|. .+.. .-..++|+|+.|.
T Consensus 21 vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 21 VKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred hhhhcccCCCcc---HHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 344455555444 2233444556666666666665443 2455566666666666555 3322 2233455555555
Q ss_pred ccCCC
Q 005168 310 LSNNS 314 (710)
Q Consensus 310 Ls~n~ 314 (710)
|..|+
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 44444
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.36 E-value=0.0015 Score=62.28 Aligned_cols=60 Identities=27% Similarity=0.282 Sum_probs=39.5
Q ss_pred hhcCCCCCCEEEccCCcCC--C-C-------CCCcEEEccccccccccCcccccCCCCCcEEEccCCccc
Q 005168 82 EFDSFNNLEVLDMSYNKID--N-L-------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMN 141 (710)
Q Consensus 82 ~~~~l~~L~~L~Ls~n~l~--~-~-------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~ 141 (710)
.|-.+++|++|.+|.|.+. + + ++|+++++++|+++..-...++..+.+|..|++.+|..+
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 3556677777787777322 1 1 777788888877775444555667777777777776544
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.0007 Score=64.57 Aligned_cols=84 Identities=19% Similarity=0.178 Sum_probs=56.8
Q ss_pred cccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC-cccccCCCCCEE
Q 005168 512 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP-HQLVELKTLEVF 590 (710)
Q Consensus 512 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~l~~l~~L~~L 590 (710)
+.+.+.|++.++.+.++ .....++.|+.|.||=|+|+.+ ..|..+++|++|+|..|.|..... ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45667777777777643 2345677777777777777776 446677777777777777764322 235667777777
Q ss_pred eccCCcccc
Q 005168 591 SVAYNNLSG 599 (710)
Q Consensus 591 ~l~~N~l~~ 599 (710)
-|..||=.+
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 777777543
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.26 E-value=0.0044 Score=68.26 Aligned_cols=143 Identities=17% Similarity=-0.013 Sum_probs=59.0
Q ss_pred cCCCCCcEEEccCCc-ccccccccccCCCCCCcccEEEecCCCC-CCCccChhc-cCCCCCCEEEccCCcCc-ccCChhH
Q 005168 125 FNHSRLKIFHAKNNQ-MNAEITESHSLTAPNFQLQSLSLSSSYG-DGVTFPKFL-YHQHDLEYVRLSHIKMN-GEFPNWL 200 (710)
Q Consensus 125 ~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~l-~~~~~L~~L~ls~~~~~-~~~~~~~ 200 (710)
..+.+|+.++++++. ++......+.. .+++|+.|.+ ..|. .++..-..+ ..++.|++|+++.|... +..-...
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~--~c~~L~~L~l-~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~ 316 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALAS--RCPNLETLSL-SNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL 316 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHh--hCCCcceEcc-CCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH
Confidence 344566666666655 33222222111 1335555554 4443 222222222 24555666666655432 2111111
Q ss_pred hhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcc--cCChhhhhcCCCccEEEccCCcCcccC-CccCcCC
Q 005168 201 LENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRG--HIPVEIGDVLPSLYVFNISMNALDGSI-PSSFGNM 277 (710)
Q Consensus 201 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~--~~~~~~~~~~~~L~~L~L~~n~i~~~~-~~~f~~l 277 (710)
..++++++.|.+..... ++.++.+.+.+..-.. .........+++++.+.+..+.+.... ...+.++
T Consensus 317 ~~~c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc 386 (482)
T KOG1947|consen 317 LKNCPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGC 386 (482)
T ss_pred HHhCcchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCC
Confidence 23455555544332211 3334444433322210 222333344666666666666533222 1333444
Q ss_pred CCC
Q 005168 278 KFL 280 (710)
Q Consensus 278 ~~L 280 (710)
+.|
T Consensus 387 ~~l 389 (482)
T KOG1947|consen 387 PNL 389 (482)
T ss_pred ccc
Confidence 444
No 70
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=94.59 E-value=0.025 Score=70.78 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=49.3
Q ss_pred eCcCCcCcccCCcccccCCCCCEEeccCCccccccCC-CccccccCCcccccCCCCCCCCCCCCCCCCCCCCCccCCCCC
Q 005168 567 DLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE-WTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNER 645 (710)
Q Consensus 567 ~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~ 645 (710)
||++|+|+.+.+..|..+++|+.|+|++|||.|+|.- |+..|..-...... .+ ....|..|..+++..+....
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~-~~-----~~i~CasP~~LrG~~L~~l~ 74 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVR-QP-----EAALCAGPGALAGQPLLGIP 74 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCcccc-CC-----cccCCCCChHHCCCCcccCC
Confidence 6889999988888889999999999999999999953 33333221111110 00 01157888777777666554
Q ss_pred CC
Q 005168 646 DD 647 (710)
Q Consensus 646 ~~ 647 (710)
.+
T Consensus 75 ~~ 76 (2740)
T TIGR00864 75 LL 76 (2740)
T ss_pred cc
Confidence 43
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.16 E-value=0.0089 Score=65.83 Aligned_cols=186 Identities=18% Similarity=0.054 Sum_probs=87.7
Q ss_pred CCCCCCEEEccCCc-CcccCChhHhhcCCCCcEEEccCC-cccccC----ccCccCCCCCCEEEcccCc-CcccCChhhh
Q 005168 178 HQHDLEYVRLSHIK-MNGEFPNWLLENNTKLATLFLVND-SLAGPF----WLPIHSHKRLGILDISNNN-IRGHIPVEIG 250 (710)
Q Consensus 178 ~~~~L~~L~ls~~~-~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~ls~n~-i~~~~~~~~~ 250 (710)
..+.|+.+.+..+. ++...-..+...+++|++|+++++ ...... ......+++|+.|+++.+. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 35667777776663 322111223356677777777652 211111 1123445677777777766 4422223333
Q ss_pred hcCCCccEEEccCCc-CcccC-CccCcCCCCCCEEeccCCccC-Cc-CChhhhcCCCCCcEEEccCCC---CcCeeeccC
Q 005168 251 DVLPSLYVFNISMNA-LDGSI-PSSFGNMKFLQLLDLSNNQLT-GE-IPEHLAVGCVNLQFLMLSNNS---LKEGLYLTN 323 (710)
Q Consensus 251 ~~~~~L~~L~L~~n~-i~~~~-~~~f~~l~~L~~L~Ls~n~l~-~~-i~~~~~~~l~~L~~L~Ls~n~---l~~~l~l~~ 323 (710)
..+++|+.|.+.++. +++.. .....+++.|+.|+++.+... +. +... ..++++|+.|.+.... ..+.+.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~~l~~ 344 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNGCPSLTDLSLSG 344 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence 446677777766665 44321 122345667777777766542 11 2222 3345655554433322 111111111
Q ss_pred ccCc---cCcCccccCCCccceeeCccCcccccc-chhhcCCCCC
Q 005168 324 NSLS---GNIPGWLGNLTWLIHIIMPENHLEGPI-PVEFCQLYSL 364 (710)
Q Consensus 324 n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L 364 (710)
.... .........+++++.+.+..+...... ...+.+++.|
T Consensus 345 ~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 345 LLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred hhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 1110 112223456666666666666533222 2334445544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.09 E-value=0.018 Score=32.48 Aligned_cols=12 Identities=58% Similarity=0.681 Sum_probs=5.1
Q ss_pred CCEEeCcCCcCc
Q 005168 563 IESLDLSYNKLN 574 (710)
Q Consensus 563 L~~L~Ls~N~i~ 574 (710)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.68 E-value=0.028 Score=31.74 Aligned_cols=21 Identities=52% Similarity=0.661 Sum_probs=12.1
Q ss_pred CCCEEeCCCccCCCCCchhhcC
Q 005168 538 RIQTLNLSYNNLTGLIPSTFSN 559 (710)
Q Consensus 538 ~L~~L~Ls~n~l~~~~~~~~~~ 559 (710)
+|++|||++|+++.++++ |++
T Consensus 1 ~L~~Ldls~n~l~~ip~~-~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS-FSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTT-TTT
T ss_pred CccEEECCCCcCEeCChh-hcC
Confidence 366677777777644333 543
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.98 E-value=0.086 Score=31.12 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=12.2
Q ss_pred CCCCEEeCCCccCCCCCchhhc
Q 005168 537 TRIQTLNLSYNNLTGLIPSTFS 558 (710)
Q Consensus 537 ~~L~~L~Ls~n~l~~~~~~~~~ 558 (710)
++|+.|+|++|.|+.+++++|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 4555666666666555555443
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.98 E-value=0.086 Score=31.12 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=12.2
Q ss_pred CCCCEEeCCCccCCCCCchhhc
Q 005168 537 TRIQTLNLSYNNLTGLIPSTFS 558 (710)
Q Consensus 537 ~~L~~L~Ls~n~l~~~~~~~~~ 558 (710)
++|+.|+|++|.|+.+++++|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 4555666666666555555443
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.54 E-value=0.11 Score=30.59 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=18.0
Q ss_pred CCCCCEEeccCCccCCcCChhhhc
Q 005168 277 MKFLQLLDLSNNQLTGEIPEHLAV 300 (710)
Q Consensus 277 l~~L~~L~Ls~n~l~~~i~~~~~~ 300 (710)
+++|++|+|++|+++ .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467888888888888 78887774
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.54 E-value=0.11 Score=30.59 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=18.0
Q ss_pred CCCCCEEeccCCccCCcCChhhhc
Q 005168 277 MKFLQLLDLSNNQLTGEIPEHLAV 300 (710)
Q Consensus 277 l~~L~~L~Ls~n~l~~~i~~~~~~ 300 (710)
+++|++|+|++|+++ .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467888888888888 78887774
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.41 E-value=0.0018 Score=69.71 Aligned_cols=60 Identities=32% Similarity=0.380 Sum_probs=31.6
Q ss_pred ccEEECcCCcCCCC----CCcccccc-CCCCEEeCCCccCCCCCc----hhhcCCccCCEEeCcCCcCc
Q 005168 515 LSGLYLSCNKLIGH----IPPQIGNL-TRIQTLNLSYNNLTGLIP----STFSNLKHIESLDLSYNKLN 574 (710)
Q Consensus 515 L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~i~ 574 (710)
+..|++++|.+.+. ....+..+ ..+++++++.|.|+.-.. ..+...+.++.|.+++|.+.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44466666666533 11223333 455666666666654422 33344456666666666665
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.02 E-value=0.14 Score=26.77 Aligned_cols=13 Identities=69% Similarity=0.810 Sum_probs=4.5
Q ss_pred CCCEEeccCCccC
Q 005168 279 FLQLLDLSNNQLT 291 (710)
Q Consensus 279 ~L~~L~Ls~n~l~ 291 (710)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.88 E-value=0.004 Score=67.00 Aligned_cols=167 Identities=19% Similarity=0.156 Sum_probs=89.9
Q ss_pred hhcCCCCCCEEEccCCcCCCC-------------CCCcEEEccccccccccCc---ccccCCCCCcEEEccCCccccccc
Q 005168 82 EFDSFNNLEVLDMSYNKIDNL-------------VVPQELRLSDNHFRIPISL---EPLFNHSRLKIFHAKNNQMNAEIT 145 (710)
Q Consensus 82 ~~~~l~~L~~L~Ls~n~l~~~-------------~~L~~L~L~~~~l~~~~~~---~~l~~l~~L~~L~L~~n~~~~~~~ 145 (710)
++...+.|+.|++++|.+... ..+++|++..|.++..... ..+.....++.++++.|.+.....
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 566677788888888876643 3456667777766632211 123446677777777776642111
Q ss_pred ccccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChh---HhhcCCC-CcEEEccCCccccc-
Q 005168 146 ESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNW---LLENNTK-LATLFLVNDSLAGP- 220 (710)
Q Consensus 146 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~---~~~~l~~-L~~L~l~~~~~~~~- 220 (710)
..... ..+..+....++++|++++|.++...... .....+. +..+++..|++.+.
T Consensus 190 ~~l~~--------------------~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g 249 (478)
T KOG4308|consen 190 LVLSQ--------------------ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVG 249 (478)
T ss_pred HHHhh--------------------hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHH
Confidence 11000 00111223456666666666655322111 1123333 55566766666532
Q ss_pred ---CccCccCC-CCCCEEEcccCcCcccCChhhhh---cCCCccEEEccCCcCcc
Q 005168 221 ---FWLPIHSH-KRLGILDISNNNIRGHIPVEIGD---VLPSLYVFNISMNALDG 268 (710)
Q Consensus 221 ---~~~~~~~~-~~L~~L~ls~n~i~~~~~~~~~~---~~~~L~~L~L~~n~i~~ 268 (710)
....+..+ ..+++++++.|.|+..-...... ..++++++.+.+|.+..
T Consensus 250 ~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 250 VEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 12234444 56788888888877443332222 14578888888888764
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.79 E-value=0.018 Score=53.83 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=57.3
Q ss_pred cCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCc-------ccccEEecCCCccee
Q 005168 4 LSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKF-------VVSKELYLDDTGFKG 76 (710)
Q Consensus 4 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l-------~~l~~L~L~~~~~~~ 76 (710)
+|--.++.+.-.....+...+.||++.|++. ... ..|+-+..|+.||++.|++..+ ..++++++..|..+
T Consensus 25 ~s~s~~s~~~v~ei~~~kr~tvld~~s~r~v-n~~-~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~- 101 (326)
T KOG0473|consen 25 LSLSELSEIPVREIASFKRVTVLDLSSNRLV-NLG-KNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS- 101 (326)
T ss_pred CCHHHhcccchhhhhccceeeeehhhhhHHH-hhc-cchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-
Confidence 3334455555556667777788888887765 344 5677777777788887776522 22344555555544
Q ss_pred ecCHHhhcCCCCCCEEEccCCcC
Q 005168 77 TLDIREFDSFNNLEVLDMSYNKI 99 (710)
Q Consensus 77 ~i~~~~~~~l~~L~~L~Ls~n~l 99 (710)
..|. ++...++++++++-.|.|
T Consensus 102 ~~p~-s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 102 QQPK-SQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hCCc-cccccCCcchhhhccCcc
Confidence 5555 667777777777666654
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.61 E-value=0.91 Score=26.75 Aligned_cols=17 Identities=53% Similarity=0.796 Sum_probs=9.8
Q ss_pred CCCCEEeCCCCCCCCcc
Q 005168 46 RDLEELDIGENKIDKFV 62 (710)
Q Consensus 46 ~~L~~L~Ls~n~l~~l~ 62 (710)
.+|+.|+|++|+|+++.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 45666666666665333
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.05 E-value=0.052 Score=50.84 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=72.0
Q ss_pred cccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEe
Q 005168 512 LSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFS 591 (710)
Q Consensus 512 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 591 (710)
....+.||++.|++. -....|+-++.|..|+++.|.+.. .|..++.+..+..+++.+|..+ ..|..+...+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 346788999999887 345668888999999999999984 5677888889999999999998 7888899999999999
Q ss_pred ccCCccc
Q 005168 592 VAYNNLS 598 (710)
Q Consensus 592 l~~N~l~ 598 (710)
+-+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999975
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.45 E-value=0.41 Score=44.20 Aligned_cols=76 Identities=21% Similarity=0.174 Sum_probs=43.5
Q ss_pred eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhc----CCCCCCEEeCCCCCCCCcccccEEecCCCcceee
Q 005168 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFD----SLRDLEELDIGENKIDKFVVSKELYLDDTGFKGT 77 (710)
Q Consensus 2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~----~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~ 77 (710)
+|-|+..|.++..+.|.+++.++.|.+.+++ +++...+. -.++|+.|++++|. +|+..
T Consensus 106 VDAsds~I~~eGle~L~~l~~i~~l~l~~ck---~~dD~~L~~l~~~~~~L~~L~lsgC~---------------rIT~~ 167 (221)
T KOG3864|consen 106 VDASDSSIMYEGLEHLRDLRSIKSLSLANCK---YFDDWCLERLGGLAPSLQDLDLSGCP---------------RITDG 167 (221)
T ss_pred EecCCchHHHHHHHHHhccchhhhheecccc---chhhHHHHHhcccccchheeeccCCC---------------eechh
Confidence 4556666666666677777777777776664 23323332 24566666666552 12212
Q ss_pred cCHHhhcCCCCCCEEEccC
Q 005168 78 LDIREFDSFNNLEVLDMSY 96 (710)
Q Consensus 78 i~~~~~~~l~~L~~L~Ls~ 96 (710)
--. .+.++++|+.|.+.+
T Consensus 168 GL~-~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 168 GLA-CLLKLKNLRRLHLYD 185 (221)
T ss_pred HHH-HHHHhhhhHHHHhcC
Confidence 222 566777777777665
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.81 E-value=0.33 Score=44.76 Aligned_cols=60 Identities=18% Similarity=0.111 Sum_probs=34.3
Q ss_pred CccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCc-CChhhhcCCCCCcEEEccCCC
Q 005168 255 SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE-IPEHLAVGCVNLQFLMLSNNS 314 (710)
Q Consensus 255 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~-i~~~~~~~l~~L~~L~Ls~n~ 314 (710)
.++.++-++..|..+.-+-+.+++.++.|.+.++.--+. --..+....++|+.|++++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 566777777777666555666667777777766642211 111122234667777776665
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=71.31 E-value=1.1 Score=25.74 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=4.4
Q ss_pred ccceeeCccCccc
Q 005168 339 WLIHIIMPENHLE 351 (710)
Q Consensus 339 ~L~~L~L~~n~l~ 351 (710)
+|++|++++|.++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3344444444433
No 87
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=65.36 E-value=7.5 Score=25.56 Aligned_cols=11 Identities=9% Similarity=0.081 Sum_probs=4.2
Q ss_pred eeeeehhhHHH
Q 005168 657 ITFTTSYVIVI 667 (710)
Q Consensus 657 ~~~~~~~~~~~ 667 (710)
+++++++=+++
T Consensus 13 Ia~~VvVPV~v 23 (40)
T PF08693_consen 13 IAVGVVVPVGV 23 (40)
T ss_pred EEEEEEechHH
Confidence 34444333333
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.98 E-value=4.5 Score=23.80 Aligned_cols=18 Identities=28% Similarity=0.610 Sum_probs=11.0
Q ss_pred ccCCEEeCcCCcCcccCCc
Q 005168 561 KHIESLDLSYNKLNGKIPH 579 (710)
Q Consensus 561 ~~L~~L~Ls~N~i~~~~~~ 579 (710)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35667777777766 4443
No 89
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=64.62 E-value=12 Score=30.42 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=9.8
Q ss_pred eeeeeehhhHHHHHHHHHHh
Q 005168 656 FITFTTSYVIVIFAIVIILY 675 (710)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~ 675 (710)
++++++++++++.+++.+++
T Consensus 68 iagi~vg~~~~v~~lv~~l~ 87 (96)
T PTZ00382 68 IAGISVAVVAVVGGLVGFLC 87 (96)
T ss_pred EEEEEeehhhHHHHHHHHHh
Confidence 45555555555544444433
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.26 E-value=3.6 Score=44.06 Aligned_cols=13 Identities=31% Similarity=0.268 Sum_probs=6.9
Q ss_pred CCEEeccCCcccc
Q 005168 587 LEVFSVAYNNLSG 599 (710)
Q Consensus 587 L~~L~l~~N~l~~ 599 (710)
|+.|-+.|||+..
T Consensus 272 Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 272 LEELVLEGNPLCT 284 (585)
T ss_pred HHHeeecCCcccc
Confidence 4555555555543
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=59.26 E-value=39 Score=35.86 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=30.8
Q ss_pred CCCEEEcccCcCcccCChhhhhcC--CCccEEEccCCcCcc---cCCccCcCCCCCCEEeccCCcc
Q 005168 230 RLGILDISNNNIRGHIPVEIGDVL--PSLYVFNISMNALDG---SIPSSFGNMKFLQLLDLSNNQL 290 (710)
Q Consensus 230 ~L~~L~ls~n~i~~~~~~~~~~~~--~~L~~L~L~~n~i~~---~~~~~f~~l~~L~~L~Ls~n~l 290 (710)
.+++++++.|.....+|....... .-++.++.+.-.+.. ..+..++..+++...+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 355667777666655554433221 134555555544431 1223344455666666666644
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=59.05 E-value=7.1 Score=50.31 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=24.2
Q ss_pred eCCCccCCCCCchhhcCCccCCEEeCcCCcCcc
Q 005168 543 NLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 575 (710)
Q Consensus 543 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 575 (710)
||++|+|+.+.++.|..+++|+.|+|++|.+.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 567777777777777777777777777777764
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=56.89 E-value=8.4 Score=23.07 Aligned_cols=13 Identities=54% Similarity=0.721 Sum_probs=6.9
Q ss_pred cCCEEeCcCCcCc
Q 005168 562 HIESLDLSYNKLN 574 (710)
Q Consensus 562 ~L~~L~Ls~N~i~ 574 (710)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.67 E-value=13 Score=40.05 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=5.8
Q ss_pred CCCccEEEccCC
Q 005168 253 LPSLYVFNISMN 264 (710)
Q Consensus 253 ~~~L~~L~L~~n 264 (710)
.|+|+.|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 344555555544
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=46.01 E-value=91 Score=33.25 Aligned_cols=15 Identities=40% Similarity=0.543 Sum_probs=8.3
Q ss_pred CCCCCEEEcccCcCc
Q 005168 228 HKRLGILDISNNNIR 242 (710)
Q Consensus 228 ~~~L~~L~ls~n~i~ 242 (710)
-+.+..|++++|...
T Consensus 439 tqtl~kldisgn~mg 453 (553)
T KOG4242|consen 439 TQTLAKLDISGNGMG 453 (553)
T ss_pred CcccccccccCCCcc
Confidence 345556666666543
No 96
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=44.24 E-value=9.9 Score=33.42 Aligned_cols=16 Identities=13% Similarity=-0.120 Sum_probs=9.2
Q ss_pred eeeeeeehhhHHHHHH
Q 005168 655 FFITFTTSYVIVIFAI 670 (710)
Q Consensus 655 ~~~~~~~~~~~~~~~~ 670 (710)
++|++++++.+.++++
T Consensus 50 IVIGvVVGVGg~ill~ 65 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLG 65 (154)
T ss_pred EEEEEEecccHHHHHH
Confidence 4667777765544443
No 97
>PF15050 SCIMP: SCIMP protein
Probab=43.66 E-value=11 Score=31.30 Aligned_cols=28 Identities=25% Similarity=0.597 Sum_probs=15.0
Q ss_pred eeeeeehhhHHHHHHHHHHhhhhhhHHH
Q 005168 656 FITFTTSYVIVIFAIVIILYVNSYWRRR 683 (710)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (710)
++.++++++++-+++..++|+.++|..|
T Consensus 9 WiiLAVaII~vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYCVCRWQLR 36 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555444555556665666544
No 98
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=40.65 E-value=19 Score=36.20 Aligned_cols=18 Identities=33% Similarity=0.753 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhhhhhHH
Q 005168 665 IVIFAIVIILYVNSYWRR 682 (710)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~ 682 (710)
+++++|++++|+.+|+||
T Consensus 266 liIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 266 LIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444555555554
No 99
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=37.22 E-value=29 Score=32.45 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=10.4
Q ss_pred eeeeeeehhhHHHHHHHHHHhh
Q 005168 655 FFITFTTSYVIVIFAIVIILYV 676 (710)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~ 676 (710)
+++++++|++++++++++++++
T Consensus 39 I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeecchhhhHHHHHHHHHH
Confidence 3444555555544444444444
No 100
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=36.45 E-value=69 Score=21.08 Aligned_cols=8 Identities=25% Similarity=0.800 Sum_probs=3.4
Q ss_pred hhhhhHHH
Q 005168 676 VNSYWRRR 683 (710)
Q Consensus 676 ~~~~~~~~ 683 (710)
.+++|..|
T Consensus 29 iYRKw~aR 36 (43)
T PF08114_consen 29 IYRKWQAR 36 (43)
T ss_pred HHHHHHHH
Confidence 33444433
No 101
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=35.94 E-value=12 Score=31.59 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHHH
Q 005168 663 YVIVIFAIVIILYVNSYWRRRWFY 686 (710)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~ 686 (710)
+++++++.+++.++++|.|++...
T Consensus 109 il~~i~is~~~~~~yr~~r~~~~~ 132 (139)
T PHA03099 109 VLVGIIITCCLLSVYRFTRRTKLP 132 (139)
T ss_pred HHHHHHHHHHHHhhheeeecccCc
Confidence 334444444445555555555443
No 102
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.55 E-value=15 Score=31.27 Aligned_cols=13 Identities=8% Similarity=0.066 Sum_probs=5.4
Q ss_pred eeeeehhhHHHHH
Q 005168 657 ITFTTSYVIVIFA 669 (710)
Q Consensus 657 ~~~~~~~~~~~~~ 669 (710)
++++++++++++.
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 3344444444433
No 103
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=29.77 E-value=38 Score=19.63 Aligned_cols=13 Identities=38% Similarity=0.669 Sum_probs=8.5
Q ss_pred CCCCCEEECCCCc
Q 005168 20 LSSLRSLNLNGNS 32 (710)
Q Consensus 20 l~~L~~L~Ls~n~ 32 (710)
+++|++|+++++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4567777777764
No 104
>PF15102 TMEM154: TMEM154 protein family
Probab=24.15 E-value=64 Score=28.34 Aligned_cols=7 Identities=0% Similarity=-0.311 Sum_probs=2.5
Q ss_pred Hhhhhhh
Q 005168 674 LYVNSYW 680 (710)
Q Consensus 674 ~~~~~~~ 680 (710)
+.+++||
T Consensus 79 v~~~kRk 85 (146)
T PF15102_consen 79 VIYYKRK 85 (146)
T ss_pred eeEEeec
Confidence 3333333
No 105
>PTZ00046 rifin; Provisional
Probab=24.02 E-value=29 Score=35.56 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHhhhhhhHHHHH
Q 005168 663 YVIVIFAIVIILYVNSYWRRRWF 685 (710)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~ 685 (710)
++++++++++++|+..|+||+..
T Consensus 323 AIvVIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 323 AIVVIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhcch
Confidence 33334445555666666655543
No 106
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=23.13 E-value=32 Score=35.16 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHhhhhhhHHHHH
Q 005168 664 VIVIFAIVIILYVNSYWRRRWF 685 (710)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~ 685 (710)
+++++++++++|+..|+||+..
T Consensus 319 IvvIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 319 ILIIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHHhhhcch
Confidence 3333444555666666655533
No 107
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.12 E-value=96 Score=26.89 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=5.5
Q ss_pred HHHHHhhhhhhHHH
Q 005168 670 IVIILYVNSYWRRR 683 (710)
Q Consensus 670 ~~~~~~~~~~~~~~ 683 (710)
++++++.+.+..+|
T Consensus 12 i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 12 ILLFLFLFYCHNRR 25 (130)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444443333
No 108
>PF15069 FAM163: FAM163 family
Probab=21.12 E-value=1.2e+02 Score=26.45 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=9.0
Q ss_pred HHHHHHhhhhhhHHHHHHH
Q 005168 669 AIVIILYVNSYWRRRWFYF 687 (710)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~ 687 (710)
++.+++.+..|-|.+||..
T Consensus 17 ILLcIIaVLCYCRLQYYCC 35 (143)
T PF15069_consen 17 ILLCIIAVLCYCRLQYYCC 35 (143)
T ss_pred HHHHHHHHHHHHhhHHHHh
Confidence 3333344444455666544
Done!