Query 005168
Match_columns 710
No_of_seqs 391 out of 4504
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 17:27:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.8E-67 2.7E-71 604.1 45.2 625 2-642 55-760 (768)
2 3rgz_A Protein brassinosteroid 100.0 6.6E-61 2.3E-65 554.6 44.6 595 21-626 50-721 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.6E-58 1.6E-62 526.3 47.0 587 2-649 30-670 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 3.7E-56 1.3E-60 510.5 46.5 562 2-626 9-626 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 9.4E-56 3.2E-60 516.7 35.3 554 2-649 9-607 (844)
6 3t6q_A CD180 antigen; protein- 100.0 5.3E-55 1.8E-59 494.2 37.6 542 2-646 38-603 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.2E-51 4E-56 466.8 45.9 524 2-626 17-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-51 5.4E-56 465.7 40.7 556 2-648 16-603 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-51 7.3E-56 479.9 42.2 513 24-627 7-565 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-49 7.4E-54 448.2 37.8 500 22-627 12-563 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 2E-46 6.9E-51 421.0 37.1 491 3-603 13-536 (570)
12 4g8a_A TOLL-like receptor 4; l 100.0 2.2E-45 7.5E-50 418.3 40.1 545 1-645 56-622 (635)
13 2z81_A CD282 antigen, TOLL-lik 100.0 4.1E-45 1.4E-49 408.3 37.1 476 2-602 10-514 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 8.1E-45 2.8E-49 407.9 37.6 503 23-627 9-536 (570)
15 2z7x_B TOLL-like receptor 1, v 100.0 5.8E-45 2E-49 404.0 27.8 457 1-602 4-485 (520)
16 2z81_A CD282 antigen, TOLL-lik 100.0 4.8E-44 1.6E-48 399.6 30.6 496 20-626 4-514 (549)
17 4eco_A Uncharacterized protein 100.0 8.9E-45 3E-49 410.1 22.0 474 63-626 82-630 (636)
18 4g8a_A TOLL-like receptor 4; l 100.0 3E-41 1E-45 384.1 38.9 505 3-627 37-585 (635)
19 4ecn_A Leucine-rich repeat pro 100.0 3E-42 1E-46 395.2 29.5 442 103-623 323-865 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-42 5.6E-47 384.3 25.3 438 1-578 25-485 (520)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-41 5.5E-46 379.5 26.8 367 156-603 122-515 (562)
22 4eco_A Uncharacterized protein 100.0 7.3E-41 2.5E-45 378.1 28.8 364 190-625 193-603 (636)
23 4ecn_A Leucine-rich repeat pro 100.0 1.3E-40 4.4E-45 381.7 30.7 450 63-599 324-865 (876)
24 3v47_A TOLL-like receptor 5B a 100.0 1.3E-39 4.4E-44 354.9 28.7 374 156-603 31-413 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-39 3.6E-44 364.7 24.8 457 1-578 35-514 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 2.8E-38 9.6E-43 344.3 29.9 371 184-626 14-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 3.8E-37 1.3E-41 332.4 21.7 403 19-603 9-416 (454)
28 2id5_A Lingo-1, leucine rich r 100.0 1.1E-36 3.6E-41 333.7 22.7 324 183-602 14-337 (477)
29 2id5_A Lingo-1, leucine rich r 100.0 9.5E-36 3.3E-40 326.1 25.6 337 233-641 15-368 (477)
30 1jl5_A Outer protein YOPM; leu 100.0 1.5E-35 5.1E-40 319.9 23.8 397 63-623 12-410 (454)
31 3o6n_A APL1; leucine-rich repe 100.0 7.2E-35 2.4E-39 310.3 26.0 335 179-626 44-378 (390)
32 1o6v_A Internalin A; bacterial 100.0 1.6E-33 5.6E-38 306.9 33.4 327 176-600 64-390 (466)
33 3oja_B Anopheles plasmodium-re 100.0 1.4E-33 4.7E-38 316.9 26.2 333 180-625 51-383 (597)
34 3bz5_A Internalin-J, INLJ; leu 100.0 6E-33 2.1E-37 299.8 29.9 269 8-349 29-297 (457)
35 1o6v_A Internalin A; bacterial 100.0 1.4E-32 4.7E-37 299.6 32.6 346 179-624 45-390 (466)
36 3bz5_A Internalin-J, INLJ; leu 100.0 5.8E-33 2E-37 300.0 28.3 357 41-604 37-393 (457)
37 3o6n_A APL1; leucine-rich repe 100.0 6.5E-33 2.2E-37 295.2 25.4 313 228-626 44-356 (390)
38 4fmz_A Internalin; leucine ric 100.0 6.6E-32 2.2E-36 282.8 30.6 305 203-598 42-346 (347)
39 3oja_B Anopheles plasmodium-re 100.0 3E-32 1E-36 306.0 24.8 313 228-626 50-362 (597)
40 4fmz_A Internalin; leucine ric 100.0 8.2E-31 2.8E-35 274.5 28.6 307 224-621 39-345 (347)
41 2ft3_A Biglycan; proteoglycan, 100.0 6E-31 2E-35 273.4 26.0 288 230-596 34-331 (332)
42 1xku_A Decorin; proteoglycan, 100.0 1.6E-30 5.5E-35 270.0 27.9 289 206-596 32-330 (330)
43 1ogq_A PGIP-2, polygalacturona 100.0 2E-31 7E-36 273.9 19.7 259 278-630 50-312 (313)
44 1xku_A Decorin; proteoglycan, 100.0 5.8E-30 2E-34 265.8 28.4 250 181-465 32-282 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 3.6E-30 1.2E-34 267.6 26.1 288 206-572 34-331 (332)
46 1ogq_A PGIP-2, polygalacturona 100.0 6.3E-31 2.1E-35 270.3 17.1 254 255-602 51-308 (313)
47 1z7x_W Ribonuclease inhibitor; 100.0 5.5E-33 1.9E-37 303.0 -4.9 353 172-602 48-444 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-32 5E-37 299.6 -2.1 368 180-600 3-413 (461)
49 3zyj_A Leucine-rich repeat-con 100.0 7.9E-29 2.7E-33 267.8 24.8 251 256-602 45-296 (440)
50 3zyi_A Leucine-rich repeat-con 100.0 8.8E-29 3E-33 268.4 23.2 251 256-602 56-307 (452)
51 2z66_A Variable lymphocyte rec 100.0 6.7E-29 2.3E-33 254.9 20.0 286 257-641 10-299 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 1.2E-29 4E-34 266.1 14.5 280 229-603 31-319 (353)
53 2z66_A Variable lymphocyte rec 100.0 1.2E-28 4.1E-33 253.0 19.0 279 232-607 10-296 (306)
54 1ozn_A Reticulon 4 receptor; N 100.0 1.8E-27 6E-32 241.6 19.0 260 281-642 14-274 (285)
55 2z80_A TOLL-like receptor 2, v 100.0 5.4E-28 1.9E-32 253.4 15.7 282 205-578 31-318 (353)
56 3zyj_A Leucine-rich repeat-con 100.0 8.5E-27 2.9E-31 251.8 24.8 249 230-575 44-293 (440)
57 3zyi_A Leucine-rich repeat-con 99.9 1E-26 3.5E-31 252.2 23.5 248 231-575 56-304 (452)
58 1ozn_A Reticulon 4 receptor; N 99.9 8.1E-27 2.8E-31 236.7 17.9 255 232-606 14-269 (285)
59 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-25 7.7E-30 247.5 27.3 268 206-609 41-308 (622)
60 4fcg_A Uncharacterized protein 99.9 1.3E-25 4.3E-30 232.1 21.8 235 228-574 80-314 (328)
61 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-27 6.7E-32 244.9 7.3 100 514-617 170-270 (317)
62 4fcg_A Uncharacterized protein 99.9 1.1E-25 3.7E-30 232.6 20.2 235 254-599 81-315 (328)
63 3o53_A Protein LRIM1, AGAP0063 99.9 2E-27 6.7E-32 244.9 4.7 261 233-599 14-277 (317)
64 3ogk_B Coronatine-insensitive 99.9 1.1E-26 3.7E-31 261.7 8.4 418 10-455 62-547 (592)
65 2z62_A TOLL-like receptor 4, v 99.9 4.5E-25 1.5E-29 222.7 19.4 191 333-603 47-242 (276)
66 1wwl_A Monocyte differentiatio 99.9 7.2E-27 2.5E-31 240.1 5.7 132 227-375 41-186 (312)
67 3oja_A Leucine-rich immune mol 99.9 3.7E-26 1.3E-30 249.0 10.8 158 422-625 120-285 (487)
68 3g06_A SSPH2 (leucine-rich rep 99.9 5.4E-24 1.9E-28 236.4 27.2 174 180-397 40-213 (622)
69 3ogk_B Coronatine-insensitive 99.9 1.9E-27 6.4E-32 267.9 -1.0 385 126-600 110-528 (592)
70 3oja_A Leucine-rich immune mol 99.9 7.3E-26 2.5E-30 246.7 11.1 244 255-603 35-287 (487)
71 1wwl_A Monocyte differentiatio 99.9 1.6E-26 5.5E-31 237.5 4.0 201 337-599 94-310 (312)
72 2o6q_A Variable lymphocyte rec 99.9 1.2E-23 4E-28 211.3 22.5 142 419-603 82-223 (270)
73 1p9a_G Platelet glycoprotein I 99.9 7.5E-24 2.6E-28 214.5 21.1 181 339-602 32-212 (290)
74 2z62_A TOLL-like receptor 4, v 99.9 1.5E-23 5.3E-28 211.4 19.4 228 234-578 12-241 (276)
75 2o6q_A Variable lymphocyte rec 99.9 4.9E-23 1.7E-27 206.8 22.0 171 413-626 52-222 (270)
76 2p1m_B Transport inhibitor res 99.9 2.9E-26 9.8E-31 258.3 -4.1 178 178-371 154-347 (594)
77 2p1m_B Transport inhibitor res 99.9 3.5E-26 1.2E-30 257.6 -3.5 413 124-599 62-520 (594)
78 1p9a_G Platelet glycoprotein I 99.9 6.6E-23 2.2E-27 207.6 20.4 206 359-626 7-212 (290)
79 3m19_A Variable lymphocyte rec 99.9 3.2E-22 1.1E-26 198.5 18.7 146 413-601 50-195 (251)
80 3rfs_A Internalin B, repeat mo 99.9 2.7E-22 9.3E-27 201.5 17.5 141 418-608 105-245 (272)
81 3rfs_A Internalin B, repeat mo 99.9 7.5E-22 2.6E-26 198.3 18.6 144 417-603 80-223 (272)
82 2xwt_C Thyrotropin receptor; s 99.9 1.2E-21 4E-26 193.0 15.0 66 241-312 23-89 (239)
83 3goz_A Leucine-rich repeat-con 99.9 6.4E-23 2.2E-27 215.3 5.7 182 234-460 3-210 (362)
84 4ay9_X Follicle-stimulating ho 99.9 5.8E-21 2E-25 199.3 18.7 203 232-463 12-219 (350)
85 2ca6_A RAN GTPase-activating p 99.9 3.1E-23 1E-27 220.0 0.7 88 514-601 217-319 (386)
86 2xwt_C Thyrotropin receptor; s 99.9 5E-21 1.7E-25 188.5 16.1 197 230-457 32-237 (239)
87 4ay9_X Follicle-stimulating ho 99.9 9.2E-21 3.1E-25 197.8 17.9 242 257-596 12-257 (350)
88 3m19_A Variable lymphocyte rec 99.8 2.2E-20 7.6E-25 185.2 18.6 160 422-624 35-194 (251)
89 1h6u_A Internalin H; cell adhe 99.8 1.2E-20 4E-25 193.1 16.8 99 257-375 22-120 (308)
90 4glp_A Monocyte differentiatio 99.8 8.1E-21 2.8E-25 194.8 15.5 86 230-315 65-157 (310)
91 2v9t_B SLIT homolog 2 protein 99.8 6.8E-21 2.3E-25 184.5 13.6 177 422-649 32-208 (220)
92 4glp_A Monocyte differentiatio 99.8 9.3E-21 3.2E-25 194.3 15.1 226 180-459 64-307 (310)
93 2ast_B S-phase kinase-associat 99.8 1.5E-21 5.1E-26 203.0 8.6 130 230-375 48-182 (336)
94 2ast_B S-phase kinase-associat 99.8 4.1E-22 1.4E-26 207.3 4.2 254 255-606 48-314 (336)
95 3goz_A Leucine-rich repeat-con 99.8 5.5E-22 1.9E-26 208.2 4.5 258 164-463 6-301 (362)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-20 4.9E-25 182.2 13.4 173 422-646 32-206 (220)
97 1h6u_A Internalin H; cell adhe 99.8 3.1E-20 1.1E-24 189.9 16.5 103 253-375 40-142 (308)
98 2ca6_A RAN GTPase-activating p 99.8 3.5E-21 1.2E-25 204.2 3.3 252 172-462 24-319 (386)
99 2o6s_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 170.9 14.3 147 233-395 11-158 (208)
100 2xot_A Amphoterin-induced prot 99.8 3.2E-19 1.1E-23 186.9 14.2 145 415-602 56-206 (361)
101 2v9t_B SLIT homolog 2 protein 99.8 9.2E-19 3.1E-23 169.4 14.3 157 425-627 14-170 (220)
102 2o6s_A Variable lymphocyte rec 99.8 1.5E-18 5.1E-23 166.7 15.1 142 416-607 46-187 (208)
103 2xot_A Amphoterin-induced prot 99.8 5.2E-19 1.8E-23 185.2 12.8 162 422-626 39-206 (361)
104 3e6j_A Variable lymphocyte rec 99.8 4.9E-18 1.7E-22 165.5 16.7 137 422-602 40-176 (229)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 2.9E-18 9.8E-23 165.9 14.5 158 424-627 13-171 (220)
106 1h6t_A Internalin B; cell adhe 99.8 9.3E-18 3.2E-22 169.9 16.1 81 513-599 134-214 (291)
107 3e6j_A Variable lymphocyte rec 99.8 1.2E-17 4.1E-22 162.7 16.0 157 423-626 20-176 (229)
108 3cvr_A Invasion plasmid antige 99.7 1E-17 3.5E-22 183.7 16.9 56 304-377 60-115 (571)
109 3cvr_A Invasion plasmid antige 99.7 1.4E-17 4.6E-22 182.7 16.9 196 255-562 60-255 (571)
110 3sb4_A Hypothetical leucine ri 99.7 5.2E-18 1.8E-22 175.3 9.8 143 204-365 24-179 (329)
111 1w8a_A SLIT protein; signaling 99.7 2E-17 6.7E-22 156.4 13.0 168 425-647 11-180 (192)
112 3sb4_A Hypothetical leucine ri 99.7 4.7E-18 1.6E-22 175.7 9.2 288 179-567 24-327 (329)
113 1h6t_A Internalin B; cell adhe 99.7 4.2E-17 1.5E-21 165.0 15.1 127 227-376 44-170 (291)
114 1xeu_A Internalin C; cellular 99.7 2.2E-17 7.6E-22 164.3 12.8 172 336-601 17-188 (263)
115 1m9s_A Internalin B; cell inva 99.7 2.7E-17 9.2E-22 182.5 14.6 100 256-375 23-122 (605)
116 1m9s_A Internalin B; cell inva 99.7 7.3E-17 2.5E-21 179.0 18.0 80 514-599 132-211 (605)
117 2wfh_A SLIT homolog 2 protein 99.7 3E-17 1E-21 155.1 12.4 170 425-649 13-182 (193)
118 1dce_A Protein (RAB geranylger 99.7 5.4E-19 1.8E-23 195.0 -3.8 122 423-592 442-567 (567)
119 4fdw_A Leucine rich hypothetic 99.7 1.1E-15 3.6E-20 161.3 21.2 82 514-598 301-383 (401)
120 4ezg_A Putative uncharacterize 99.7 1.1E-16 3.7E-21 152.1 12.2 132 418-598 62-194 (197)
121 4ezg_A Putative uncharacterize 99.7 1.3E-16 4.5E-21 151.5 11.5 154 335-575 41-195 (197)
122 1w8a_A SLIT protein; signaling 99.7 1.5E-16 5E-21 150.4 11.2 155 423-624 30-185 (192)
123 4fdw_A Leucine rich hypothetic 99.7 2.1E-15 7.3E-20 158.9 21.1 266 228-574 112-383 (401)
124 1dce_A Protein (RAB geranylger 99.6 1.5E-18 5.3E-23 191.4 -6.3 215 275-568 346-567 (567)
125 1xeu_A Internalin C; cellular 99.6 6.7E-16 2.3E-20 153.6 12.4 59 514-576 129-187 (263)
126 2wfh_A SLIT homolog 2 protein 99.6 1.2E-15 4.1E-20 144.0 12.8 114 513-627 31-144 (193)
127 4fs7_A Uncharacterized protein 99.6 9.9E-15 3.4E-19 154.6 20.9 309 202-595 68-376 (394)
128 2o6r_A Variable lymphocyte rec 99.6 2.8E-15 9.7E-20 139.6 13.9 133 424-602 9-141 (177)
129 4b8c_D Glucose-repressible alc 99.6 1.1E-16 3.6E-21 182.4 3.9 112 269-395 215-326 (727)
130 4b8c_D Glucose-repressible alc 99.6 1.9E-16 6.5E-21 180.3 5.0 113 413-574 284-404 (727)
131 2ell_A Acidic leucine-rich nuc 99.6 3.5E-15 1.2E-19 137.7 10.8 134 421-599 23-161 (168)
132 2je0_A Acidic leucine-rich nuc 99.6 3.4E-15 1.2E-19 134.7 10.0 129 421-594 16-149 (149)
133 4fs7_A Uncharacterized protein 99.6 7.3E-14 2.5E-18 148.0 21.9 328 174-590 65-393 (394)
134 2ell_A Acidic leucine-rich nuc 99.6 2E-14 6.8E-19 132.6 12.3 137 228-379 23-164 (168)
135 3g39_A Variable lymphocyte rec 99.5 4.4E-14 1.5E-18 130.3 12.1 91 513-603 30-120 (170)
136 2o6r_A Variable lymphocyte rec 99.5 8.3E-14 2.8E-18 129.6 13.9 130 231-376 9-138 (177)
137 2je0_A Acidic leucine-rich nuc 99.5 5.9E-14 2E-18 126.5 10.5 129 228-371 16-149 (149)
138 1a9n_A U2A', U2A'; complex (nu 99.5 4.4E-14 1.5E-18 131.3 9.6 136 224-376 14-154 (176)
139 1a9n_A U2A', U2A'; complex (nu 99.5 4.4E-14 1.5E-18 131.3 9.6 134 418-599 15-154 (176)
140 4gt6_A Cell surface protein; l 99.5 1.8E-12 6.1E-17 137.2 22.2 307 206-595 65-388 (394)
141 2r9u_A Variable lymphocyte rec 99.5 1.5E-13 5.1E-18 127.1 12.0 91 513-603 33-123 (174)
142 4gt6_A Cell surface protein; l 99.4 1.6E-11 5.5E-16 129.9 24.1 315 217-598 51-370 (394)
143 3g39_A Variable lymphocyte rec 99.4 7.8E-13 2.7E-17 121.8 10.7 110 514-626 10-119 (170)
144 1ds9_A Outer arm dynein; leuci 99.4 8E-15 2.7E-19 139.3 -3.7 88 513-603 70-158 (198)
145 1ds9_A Outer arm dynein; leuci 99.4 9.6E-15 3.3E-19 138.7 -3.2 137 413-599 39-186 (198)
146 2ifg_A High affinity nerve gro 99.4 6.7E-13 2.3E-17 138.1 9.7 113 513-626 31-145 (347)
147 2r9u_A Variable lymphocyte rec 99.4 2.3E-12 8E-17 119.0 10.8 109 515-626 14-122 (174)
148 4h09_A Hypothetical leucine ri 99.3 3.8E-10 1.3E-14 118.7 22.6 142 224-383 212-353 (379)
149 4h09_A Hypothetical leucine ri 99.3 7.2E-10 2.5E-14 116.6 24.5 68 514-583 287-354 (379)
150 2ifg_A High affinity nerve gro 99.2 4.7E-11 1.6E-15 124.1 9.6 108 516-626 11-120 (347)
151 3un9_A NLR family member X1; l 99.2 1.3E-12 4.5E-17 136.3 -2.6 68 514-581 184-259 (372)
152 3un9_A NLR family member X1; l 99.1 4.1E-12 1.4E-16 132.5 -0.3 164 205-376 72-253 (372)
153 2ra8_A Uncharacterized protein 98.6 4.3E-08 1.5E-12 101.1 8.4 137 176-316 135-292 (362)
154 2ra8_A Uncharacterized protein 98.6 1.4E-08 4.9E-13 104.7 2.7 63 512-574 251-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.2 1.1E-06 3.7E-11 81.6 6.4 111 14-142 29-165 (185)
156 1io0_A Tropomodulin; LRR prote 98.2 2.4E-07 8.4E-12 86.0 0.7 64 535-598 91-164 (185)
157 3rw6_A Nuclear RNA export fact 98.2 1.8E-06 6.1E-11 84.3 6.0 64 535-600 168-235 (267)
158 3rfe_A Platelet glycoprotein I 98.1 4.3E-06 1.5E-10 72.2 6.7 96 540-645 11-109 (130)
159 3rw6_A Nuclear RNA export fact 98.1 1.3E-06 4.4E-11 85.3 3.6 90 2-93 148-257 (267)
160 3e4g_A ATP synthase subunit S, 97.8 7E-06 2.4E-10 74.1 2.1 86 514-599 62-153 (176)
161 3e4g_A ATP synthase subunit S, 97.6 2.9E-05 9.8E-10 70.1 3.2 77 20-98 60-150 (176)
162 3rfe_A Platelet glycoprotein I 96.7 0.0027 9.3E-08 54.4 6.6 58 516-575 11-69 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.6 0.00078 2.7E-08 61.9 2.4 65 534-598 95-170 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.6 0.005 1.7E-07 56.5 7.6 109 18-140 38-169 (197)
165 2lz0_A Uncharacterized protein 83.3 0.98 3.3E-05 36.1 3.8 49 6-56 5-53 (100)
166 2lz0_A Uncharacterized protein 75.1 3.4 0.00012 32.9 4.5 46 265-312 7-52 (100)
167 2klu_A T-cell surface glycopro 28.3 8.8 0.0003 27.1 -0.7 26 658-683 13-38 (70)
168 2k1k_A Ephrin type-A receptor 27.9 10 0.00036 23.8 -0.4 10 659-668 16-25 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.8e-67 Score=604.12 Aligned_cols=625 Identities=29% Similarity=0.394 Sum_probs=420.9
Q ss_pred eecCCCCCCCc---cchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC----------CcccccEEe
Q 005168 2 LNLSGNSFNNT---ILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID----------KFVVSKELY 68 (710)
Q Consensus 2 L~Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~----------~l~~l~~L~ 68 (710)
|||+++.+++. .+.+|.++++|+.++++.+.+. .++ ..|+.+++|++|+|++|.++ ++++|++|+
T Consensus 55 L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~ 132 (768)
T 3rgz_A 55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132 (768)
T ss_dssp EECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECC-CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEE
T ss_pred EECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCc-hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEE
Confidence 67777777776 5566666666666666666554 343 45666666666666666443 445566666
Q ss_pred cCCCcceeecCHHhhcCCCCCCEEEccCCcCC-----------CCCCCcEEEccccccccccCcccccCCCCCcEEEccC
Q 005168 69 LDDTGFKGTLDIREFDSFNNLEVLDMSYNKID-----------NLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKN 137 (710)
Q Consensus 69 L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~-----------~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~ 137 (710)
|++|.+.+.+|...+.++++|++|++++|+++ ++++|++|++++|.+++..+ +..+++|++|++++
T Consensus 133 Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~ 209 (768)
T 3rgz_A 133 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSS 209 (768)
T ss_dssp CCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCS
T ss_pred CcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcC
Confidence 66666665555522356666666666666543 23566666666666654322 35566666666666
Q ss_pred CcccccccccccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcc
Q 005168 138 NQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSL 217 (710)
Q Consensus 138 n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 217 (710)
|++....+. +...++|++|++ +++.+.+.+|..+..+++|++|++++|.+++..|.. .+++|++|++++|++
T Consensus 210 n~l~~~~~~----l~~l~~L~~L~L-s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 210 NNFSTGIPF----LGDCSALQHLDI-SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKF 281 (768)
T ss_dssp SCCCSCCCB----CTTCCSCCEEEC-CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEE
T ss_pred CcCCCCCcc----cccCCCCCEEEC-cCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCcc
Confidence 665543322 334446666666 555555556666666666666666666666555543 456666666666666
Q ss_pred cccCccCccCC-CCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCcc-CcCCCCCCEEeccCCccCCcCC
Q 005168 218 AGPFWLPIHSH-KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSS-FGNMKFLQLLDLSNNQLTGEIP 295 (710)
Q Consensus 218 ~~~~~~~~~~~-~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-f~~l~~L~~L~Ls~n~l~~~i~ 295 (710)
.+..|..+... ++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+|.. |.++++|++|++++|.+++.+|
T Consensus 282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p 360 (768)
T 3rgz_A 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360 (768)
T ss_dssp EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc-CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence 65555555443 66666666666666555555443 566666666666665444433 5666666666666666655555
Q ss_pred hhhhcCCC-CCcEEEccCCCCc---------------CeeeccCccCccCcCccccCCCccceeeCccCccccccchhhc
Q 005168 296 EHLAVGCV-NLQFLMLSNNSLK---------------EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFC 359 (710)
Q Consensus 296 ~~~~~~l~-~L~~L~Ls~n~l~---------------~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 359 (710)
..+.. ++ +|++|++++|.+. +.+++++|.+++.+|..+..+++|++|++++|.+++..|..|.
T Consensus 361 ~~l~~-l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 439 (768)
T 3rgz_A 361 ESLTN-LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439 (768)
T ss_dssp TTHHH-HTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred HHHHh-hhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh
Confidence 55442 33 6666666666542 2356666666667777788888888888888888777777788
Q ss_pred CCCCCCEEECCCCcCcccCCCCCC-CCCcceEEccCccccccccc-----------cCCCccCcccCChhhhcCCCccEE
Q 005168 360 QLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKR-----------DLSYNLLNGSIPDWIGELSQLSHL 427 (710)
Q Consensus 360 ~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~-----------~l~~n~~~~~~~~~~~~l~~L~~L 427 (710)
.+++|++|++++|.+.+..+..+. +++|++|++++|.+++..+. ++++|.+.+.+|.+++.+++|++|
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence 888888888888888777666665 77788888888877765443 677888888999999999999999
Q ss_pred ecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCcccc--c---------ccee--ec--
Q 005168 428 ILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKF--E---------ISFF--IE-- 492 (710)
Q Consensus 428 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~--~~-- 492 (710)
++++|++.+.+|..+..+++|+.|++++|+++|.+|..+................... + .... ..
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999998775543221111110000000 0 0000 00
Q ss_pred ----------CCCcceeeccccc--eecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCC
Q 005168 493 ----------GPQGDFTTKNIAY--IYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNL 560 (710)
Q Consensus 493 ----------~~~~~~~~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 560 (710)
............. ......++.|+.|+|++|++++.+|..|+++++|+.|+|++|.+++.+|+.|+++
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 0000000000000 0011236789999999999999999999999999999999999999999999999
Q ss_pred ccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCcc
Q 005168 561 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEAS 640 (710)
Q Consensus 561 ~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~ 640 (710)
++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|.. .++.++....+.|||.+|+.|+..|.......+..
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~ 758 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAH 758 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSCCCCSCC------
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCC
Confidence 99999999999999999999999999999999999999999985 68889999999999999999988897665555554
Q ss_pred CC
Q 005168 641 IG 642 (710)
Q Consensus 641 ~~ 642 (710)
+.
T Consensus 759 ~~ 760 (768)
T 3rgz_A 759 HQ 760 (768)
T ss_dssp --
T ss_pred CC
Confidence 33
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.6e-61 Score=554.55 Aligned_cols=595 Identities=25% Similarity=0.360 Sum_probs=505.3
Q ss_pred CCCCEEECCCCccccc---cChhhhcCCCCCCEEeCCCCCC-------CCcccccEEecCCCcceeecCH-HhhcCCCCC
Q 005168 21 SSLRSLNLNGNSLEGS---IDVKEFDSLRDLEELDIGENKI-------DKFVVSKELYLDDTGFKGTLDI-REFDSFNNL 89 (710)
Q Consensus 21 ~~L~~L~Ls~n~i~~~---i~~~~f~~l~~L~~L~Ls~n~l-------~~l~~l~~L~L~~~~~~~~i~~-~~~~~l~~L 89 (710)
.+++.|+|+++.+.|. ++ .+|.++++|+.++++.+.+ .++++|++|+|++|.+.|.+|. ..+.++++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~-~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVS-SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHH-HHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CcEEEEECCCCCcCCccCccC-hhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence 5899999999999876 76 7899999999999999854 3789999999999999988775 268999999
Q ss_pred CEEEccCCcCC---------CCCCCcEEEccccccccccCccc--ccCCCCCcEEEccCCcccccccccccCCCCCCccc
Q 005168 90 EVLDMSYNKID---------NLVVPQELRLSDNHFRIPISLEP--LFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQ 158 (710)
Q Consensus 90 ~~L~Ls~n~l~---------~~~~L~~L~L~~~~l~~~~~~~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~ 158 (710)
++|++++|.+. .+++|++|++++|.+++..+... +.++++|+.|++++|.+....+ ....++|+
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~ 203 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-----VSRCVNLE 203 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-----CTTCTTCC
T ss_pred CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-----cccCCcCC
Confidence 99999999764 34889999999999986544221 6789999999999999875443 25567999
Q ss_pred EEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEccc
Q 005168 159 SLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISN 238 (710)
Q Consensus 159 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~ 238 (710)
+|++ .++.+.+.+|. +..+++|++|++++|.+++.+|..+ ..+++|++|++++|.+.+..|.. .+++|++|++++
T Consensus 204 ~L~L-s~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~ 278 (768)
T 3rgz_A 204 FLDV-SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAE 278 (768)
T ss_dssp EEEC-CSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCS
T ss_pred EEEC-cCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcC
Confidence 9999 88888887777 8899999999999999998888876 79999999999999998877665 899999999999
Q ss_pred CcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCc--
Q 005168 239 NNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLK-- 316 (710)
Q Consensus 239 n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~-- 316 (710)
|.+++.+|..++..+++|++|++++|.+.+..|..|.++++|++|++++|.+++.+|...+.++++|++|++++|.+.
T Consensus 279 n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~ 358 (768)
T 3rgz_A 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358 (768)
T ss_dssp SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence 999999999888766999999999999999999999999999999999999988999988889999999999999875
Q ss_pred ------------CeeeccCccCccCcCccccC--CCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCC
Q 005168 317 ------------EGLYLTNNSLSGNIPGWLGN--LTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCF 382 (710)
Q Consensus 317 ------------~~l~l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~ 382 (710)
+.+++++|.+++..+..+.. +++|++|++++|.+++..|..|..+++|++|++++|.+.+..|..+
T Consensus 359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 438 (768)
T 3rgz_A 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438 (768)
T ss_dssp CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH
Confidence 33899999999988888777 8899999999999999999999999999999999999998888877
Q ss_pred C-CCCcceEEccCccccccccc-----------cCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCE
Q 005168 383 H-PLSIEQVHLSKNMLHRQLKR-----------DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQL 450 (710)
Q Consensus 383 ~-~~~L~~L~l~~n~l~~~~~~-----------~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 450 (710)
. +++|+.|++++|.+.+..+. ++++|.+.+..|.++..+++|++|++++|++++..|.++..+++|++
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 7 89999999999999876554 78899999999999999999999999999999999999999999999
Q ss_pred EEccCCcccccCCCCcccccccccccCCCCC-ccccccceeecCCCc--------cee---eccc-------------cc
Q 005168 451 LDLSNNSLHGSIPPCFDNTTLYESYNNSSSL-DEKFEISFFIEGPQG--------DFT---TKNI-------------AY 505 (710)
Q Consensus 451 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~---~~~~-------------~~ 505 (710)
|++++|++++.+|..+..+..++........ ....+...+...... .+. .... ..
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence 9999999999999988877655444332211 111111110000000 000 0000 00
Q ss_pred --eecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccccc
Q 005168 506 --IYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 583 (710)
Q Consensus 506 --~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 583 (710)
-.....++.+..++++.|.+.+..|..|..+++|+.|+|++|++++.+|..|+++++|+.|+|++|++++.+|+.+..
T Consensus 599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 678 (768)
T 3rgz_A 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678 (768)
T ss_dssp CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence 000122345556677788888888889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168 584 LKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 626 (710)
Q Consensus 584 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 626 (710)
+++|+.||+++|++++.+|..+..+..++.+++..|+.....|
T Consensus 679 L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 9999999999999999999999999999999999998765544
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.6e-58 Score=526.31 Aligned_cols=587 Identities=22% Similarity=0.209 Sum_probs=401.7
Q ss_pred eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC--------CcccccEEecCCCc
Q 005168 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID--------KFVVSKELYLDDTG 73 (710)
Q Consensus 2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~--------~l~~l~~L~L~~~~ 73 (710)
|||++|.|+++.+.+|.++++|++|++++|.+++ ++.++|+++++|++|+|++|.++ ++++|++|++++|.
T Consensus 30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc
Confidence 6667777776666667777777777777776663 33366667777777777766554 45566666666666
Q ss_pred ceeecCHHhhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccccccCcccc--cCCCCCcEEEccCCccccc
Q 005168 74 FKGTLDIREFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPL--FNHSRLKIFHAKNNQMNAE 143 (710)
Q Consensus 74 ~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~~~~~~~~l--~~l~~L~~L~L~~n~~~~~ 143 (710)
++ .+++..|.++++|++|++++|.+++. ++|++|++++|.+++. +...+ ..+++|+.|++++|++...
T Consensus 109 l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 109 IQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL-KSEELDIFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp CC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB-CHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred cC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc-CHHHhhccccccccEEECCCCccccc
Confidence 65 34433666666666666666655432 5666666666666532 21222 2345666666666666554
Q ss_pred ccccccCCCCCCcccEEEecCCCCCCCccChhcc---CCCCCCEEEccCCcCcccCChhHhhcCC--CCcEEEccCCccc
Q 005168 144 ITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLY---HQHDLEYVRLSHIKMNGEFPNWLLENNT--KLATLFLVNDSLA 218 (710)
Q Consensus 144 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~ls~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~ 218 (710)
.+.. +....+++.+++ .++.........+. ..++|+.|++++|.+.+..|..+ ..++ +|++|++++|.+.
T Consensus 187 ~~~~---~~~l~~L~~L~l-~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~-~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 187 SPGC---FHAIGRLFGLFL-NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF-LGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CTTG---GGGSSEECEEEC-TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT-GGGGGSCCCEEECTTSCCC
T ss_pred Chhh---hhhhhhhhhhhc-cccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh-hccCcCCCCEEECCCCCcC
Confidence 4433 122335555555 33332211111111 23677888888888777666655 4443 4888888888888
Q ss_pred ccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcc---------cCCccCcCCCCCCEEeccCCc
Q 005168 219 GPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDG---------SIPSSFGNMKFLQLLDLSNNQ 289 (710)
Q Consensus 219 ~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~---------~~~~~f~~l~~L~~L~Ls~n~ 289 (710)
+..+..|..+++|++|++++|.+++..|..+. .+++|+.|++++|...+ +....|.++++|++|++++|.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccCcccccCcccccEeeCCCCccCccChhhhc-CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 77777788888888888888888855454444 37788888888765432 222367788888888888888
Q ss_pred cCCcCChhhhcCCCCCcEEEccCCCC-----------------cCeeeccCccCccCcCccccCCCccceeeCccCcccc
Q 005168 290 LTGEIPEHLAVGCVNLQFLMLSNNSL-----------------KEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG 352 (710)
Q Consensus 290 l~~~i~~~~~~~l~~L~~L~Ls~n~l-----------------~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 352 (710)
+. .++...|.++++|++|++++|.+ .+.+++++|++++..+.+|..+++|++|++++|.+.+
T Consensus 341 l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 341 IP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp BC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred cC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence 87 56666777888888888888753 1347778888888888899999999999999999986
Q ss_pred ccc-hhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecC
Q 005168 353 PIP-VEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILG 430 (710)
Q Consensus 353 ~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~ 430 (710)
..+ ..|.++++|++|++++|++.+..+..+. +++|+.|++++|.+... +..|.++..+++|++|+++
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-----------~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV-----------DSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT-----------TCSSCTTTTCTTCCEEECC
T ss_pred ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc-----------ccCCcccccCCCCCEEECC
Confidence 544 7889999999999999999988888887 88999998888876521 2567889999999999999
Q ss_pred CCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceeccc
Q 005168 431 HNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGK 510 (710)
Q Consensus 431 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (710)
+|++++..+.+|.++++|++|++++|.+++..+..+.... .....
T Consensus 489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-----------------------------------~~~~~ 533 (680)
T 1ziw_A 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP-----------------------------------IYFLK 533 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC-----------------------------------CCTTT
T ss_pred CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc-----------------------------------chhhc
Confidence 9999988888899999999999999999865433321100 00012
Q ss_pred ccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccc-cCCCCCE
Q 005168 511 VLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV-ELKTLEV 589 (710)
Q Consensus 511 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~-~l~~L~~ 589 (710)
.+++|+.|+|++|+++...+..|.++++|++|+|++|+++++++..|.++++|+.|++++|++++..++.+. .+++|+.
T Consensus 534 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 613 (680)
T 1ziw_A 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSE
T ss_pred CCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCE
Confidence 256899999999999977777899999999999999999999999999999999999999999988888787 7899999
Q ss_pred EeccCCccccccC--CCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCccCCCCCCCcc
Q 005168 590 FSVAYNNLSGEIL--EWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNL 649 (710)
Q Consensus 590 L~l~~N~l~~~~~--~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~ 649 (710)
+++++|||.|.|+ .|+..|.......+.+. .....|..|...++........+.+
T Consensus 614 l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~-----~~~~~C~~p~~~~g~~l~~~~~~~~ 670 (680)
T 1ziw_A 614 LDMRFNPFDCTCESIAWFVNWINETHTNIPEL-----SSHYLCNTPPHYHGFPVRLFDTSSC 670 (680)
T ss_dssp EECTTCCCCBCCCCCSSEECCSSCC-------------------------------------
T ss_pred EEccCCCcccCCccHHHHHHHHHhcCcccccc-----cCCcEECCchHHCCCcccccChhhc
Confidence 9999999999997 45544432221111110 0112588888887776666555544
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.7e-56 Score=510.52 Aligned_cols=562 Identities=22% Similarity=0.233 Sum_probs=454.2
Q ss_pred eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC--------CcccccEEecCCCc
Q 005168 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID--------KFVVSKELYLDDTG 73 (710)
Q Consensus 2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~--------~l~~l~~L~L~~~~ 73 (710)
+|.+++.++.++. .+. +++++|++++|.++ .++..+|.++++|++|+|++|.++ ++++|++|++++|.
T Consensus 9 ~~cs~~~L~~ip~-~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 9 ADCSHLKLTQVPD-DLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EECCSSCCSSCCS-CSC--TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eECCCCCcccccc-ccC--CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 6889999997664 343 79999999999999 577688999999999999999887 56889999999999
Q ss_pred ceeecCHHhhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccccccCcccccCCCCCcEEEccCCccccccc
Q 005168 74 FKGTLDIREFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEIT 145 (710)
Q Consensus 74 ~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~ 145 (710)
++ .+|...|.++++|++|++++|+++++ ++|++|++++|.+++. +...+.++++|+.|++++|.+....+
T Consensus 85 l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 85 LS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred cC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEEEccCCcccccCH
Confidence 98 67776799999999999999987654 7899999999999854 44567889999999999999876655
Q ss_pred ccccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHh--hcCCCCcEEEccCCcccccCcc
Q 005168 146 ESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLL--ENNTKLATLFLVNDSLAGPFWL 223 (710)
Q Consensus 146 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~ 223 (710)
..+. ....++|++|++ +++.+.+..|.++..+++|+.++++++.+.+.....+. ...++|+.|++++|.+.+..+.
T Consensus 163 ~~~~-~~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 163 EELD-IFANSSLKKLEL-SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp HHHG-GGTTCEESEEEC-TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred HHhh-ccccccccEEEC-CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 4321 234468999999 78888888888888999999999999887653332221 1358999999999999998888
Q ss_pred CccCCCC--CCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCC--------c
Q 005168 224 PIHSHKR--LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTG--------E 293 (710)
Q Consensus 224 ~~~~~~~--L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~--------~ 293 (710)
.+..++. |++|++++|.+++..|..+ ..+++|++|++++|.+.+..|.+|.++++|+.|++++|...+ .
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~ 319 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccc
Confidence 8888765 9999999999994444444 458999999999999999999999999999999999875443 2
Q ss_pred CChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccc--ccchhhcCC--CCCCEEEC
Q 005168 294 IPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG--PIPVEFCQL--YSLQILDI 369 (710)
Q Consensus 294 i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l--~~L~~L~l 369 (710)
++...|..+++|++|++++|.+.. ..+..|.++++|++|++++|.+.. .....|..+ ++|+.|++
T Consensus 320 i~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L 388 (680)
T 1ziw_A 320 IDDFSFQWLKCLEHLNMEDNDIPG-----------IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBCC-----------CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred cChhhcccCCCCCEEECCCCccCC-----------CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence 333466789999999988887664 566677888888888888776432 233334433 47888888
Q ss_pred CCCcCcccCCCCCC-CCCcceEEccCccccccccc------------cCCCccCcccCChhhhcCCCccEEecCCCccc-
Q 005168 370 SDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKR------------DLSYNLLNGSIPDWIGELSQLSHLILGHNNLE- 435 (710)
Q Consensus 370 s~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~------------~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~- 435 (710)
++|++.++.+..+. +++|+.|++++|.+.+..+. ++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccc
Confidence 88888877777766 77888888877777643321 55666666677777777888888888888775
Q ss_pred -ccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceeccccccc
Q 005168 436 -GEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSL 514 (710)
Q Consensus 436 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 514 (710)
+..|..|..+++|+.|++++|.+++..+..|.+ +++
T Consensus 469 ~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-------------------------------------------l~~ 505 (680)
T 1ziw_A 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG-------------------------------------------LEK 505 (680)
T ss_dssp TTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------------------------------CTT
T ss_pred cccCCcccccCCCCCEEECCCCCCCcCChhhhcc-------------------------------------------ccc
Confidence 456777888888888888888888776666665 448
Q ss_pred ccEEECcCCcCCCCCC--------ccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCC
Q 005168 515 LSGLYLSCNKLIGHIP--------PQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKT 586 (710)
Q Consensus 515 L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~ 586 (710)
|+.|++++|.+++..+ ..|.++++|++|+|++|+++.++++.|.++++|+.|++++|++++..+..|..+++
T Consensus 506 L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 585 (680)
T 1ziw_A 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585 (680)
T ss_dssp CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCC
Confidence 9999999999986532 23789999999999999999998889999999999999999999888888899999
Q ss_pred CCEEeccCCccccccCCCcc-ccccCCcccccCCCCCCCCC
Q 005168 587 LEVFSVAYNNLSGEILEWTA-QFATFNKSSYEGNTFLCGLP 626 (710)
Q Consensus 587 L~~L~l~~N~l~~~~~~~~~-~~~~~~~~~~~~n~~~c~~~ 626 (710)
|+.|++++|.+++..+..+. .+..+..+++.+|||.|+|+
T Consensus 586 L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99999999999988777665 67889999999999999965
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.4e-56 Score=516.72 Aligned_cols=554 Identities=21% Similarity=0.194 Sum_probs=408.1
Q ss_pred eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCC---------CCCcccccEEecCCC
Q 005168 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENK---------IDKFVVSKELYLDDT 72 (710)
Q Consensus 2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~---------l~~l~~l~~L~L~~~ 72 (710)
.|.+++.++.++. -.++|++|+|++|.|++ +...+|.++++|++|+|++|. +.++++|++|+|++|
T Consensus 9 ~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ----VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEESCCCSSCCCS----SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEccCCCCCCCCC----CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 4667777776665 34678888888888773 444778888888888888772 236677778888888
Q ss_pred cceeecCHHhhcCCCCCCEEEccCCcCCC----------CCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccc
Q 005168 73 GFKGTLDIREFDSFNNLEVLDMSYNKIDN----------LVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNA 142 (710)
Q Consensus 73 ~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~----------~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~ 142 (710)
.+.+..|. .|.++++|++|+|++|.+++ +++|++|++++|.+++..+...+.++++|+.|++++|.+..
T Consensus 84 ~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHh-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 87755555 88888888888888887764 26788888888888755444568889999999999998877
Q ss_pred cccccccCCCCCCcccEEEecCCCCCCCccChhccCCCC------CCEEEccCCcCcccCChhHhhc--CCCCcEEEccC
Q 005168 143 EITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHD------LEYVRLSHIKMNGEFPNWLLEN--NTKLATLFLVN 214 (710)
Q Consensus 143 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~------L~~L~ls~~~~~~~~~~~~~~~--l~~L~~L~l~~ 214 (710)
..+..+..+.. ++|+.|++ ..+.+.+..|..+..+++ |+.|++++|.+++..+..+... .++++.+.+..
T Consensus 163 ~~~~~l~~l~~-~~L~~L~L-~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 163 VCEHELEPLQG-KTLSFFSL-AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCSGGGHHHHH-CSSCCCEE-CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred eCHHHcccccC-CccceEEC-CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 66554322211 58889999 777777777666555444 8999999998887777665332 35677887763
Q ss_pred Cc---------ccccCccCccCC--CCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEE
Q 005168 215 DS---------LAGPFWLPIHSH--KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLL 283 (710)
Q Consensus 215 ~~---------~~~~~~~~~~~~--~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L 283 (710)
+. +.+.....|..+ ++|+.|++++|.+.+ ++...+..+++|+.|++++|.+.++.+.+|.++++|++|
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 32 222233344443 678888888888884 444444457888888888888888888888888888888
Q ss_pred eccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCC
Q 005168 284 DLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYS 363 (710)
Q Consensus 284 ~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 363 (710)
++++|.+. .++...|.++++|++|++++|.+.. ..+..|.++++|++|++++|.+++. ..+++
T Consensus 320 ~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~ 382 (844)
T 3j0a_A 320 NLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAI-----------IQDQTFKFLEKLQTLDLRDNALTTI-----HFIPS 382 (844)
T ss_dssp EEESCCCS-CCCSCSCSSCTTCCEEECCSCCCCC-----------CCSSCSCSCCCCCEEEEETCCSCCC-----SSCCS
T ss_pred ECCCCCCC-ccCHHHhcCCCCCCEEECCCCCCCc-----------cChhhhcCCCCCCEEECCCCCCCcc-----cCCCC
Confidence 88888887 6666666688888888887776653 5566788888888888888888743 23778
Q ss_pred CCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCc-cc
Q 005168 364 LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPV-QL 442 (710)
Q Consensus 364 L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~ 442 (710)
|+.|++++|++..++.. ..+++.+++++|.+.+. ..+..+..+++|++|++++|++++..+. .+
T Consensus 383 L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 383 IPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENL------------DILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp CSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSS------------TTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred cchhccCCCCccccccc---ccccceeecccCccccC------------chhhhhhcCCccceeeCCCCccccccccccc
Confidence 88888888888755433 45678887777776532 1123455789999999999999865443 45
Q ss_pred CCCCCCCEEEccCCcccccCC-----CCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccE
Q 005168 443 CELNQLQLLDLSNNSLHGSIP-----PCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSG 517 (710)
Q Consensus 443 ~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 517 (710)
..+++|+.|++++|.+++..+ ..|.+ +++|+.
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~-------------------------------------------l~~L~~ 484 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEG-------------------------------------------LSHLQV 484 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSC-------------------------------------------BCCEEC
T ss_pred ccCCccccccCCCCccccccccccchhhhcC-------------------------------------------cccccE
Confidence 678999999999999874332 33333 458999
Q ss_pred EECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCcc
Q 005168 518 LYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNL 597 (710)
Q Consensus 518 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l 597 (710)
|+|++|.+++..|..|.++++|++|+|++|+++++++..+. ++|+.|+|++|++++..|+.+ .+|+.+++++||+
T Consensus 485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKF 559 (844)
T ss_dssp CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECC
T ss_pred EECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCc
Confidence 99999999999999999999999999999999999888877 899999999999999888765 4789999999999
Q ss_pred ccccCCCccccccCCcccccCCCCCCCCCCC-CCCCCCCCCCccCCCCCCCcc
Q 005168 598 SGEILEWTAQFATFNKSSYEGNTFLCGLPLP-ICRSPATMSEASIGNERDDNL 649 (710)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~-~c~~~~~~~~~~~~~~~~~~~ 649 (710)
.|.|+. .++..| ....+...|+.+.. .|..|....+.+........|
T Consensus 560 ~C~c~~--~~f~~~---~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C 607 (844)
T 3j0a_A 560 ICECEL--STFINW---LNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGC 607 (844)
T ss_dssp CCSSSC--CSHHHH---HHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC
T ss_pred cccccc--HHHHHH---HHhcCcccccccccCccCCchhhCCCccccCccccC
Confidence 998863 222222 12334455555444 798888887776665555444
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.3e-55 Score=494.20 Aligned_cols=542 Identities=19% Similarity=0.177 Sum_probs=345.0
Q ss_pred eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHH
Q 005168 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIR 81 (710)
Q Consensus 2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~ 81 (710)
|||++|.|+++.+.+|.++++|++|++++|.+.+ +.+++|+++++|++|+|+ +|.+++..|.
T Consensus 38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls----------------~n~l~~~~~~- 99 (606)
T 3t6q_A 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLT----------------ANPLIFMAET- 99 (606)
T ss_dssp EECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECT----------------TCCCSEECTT-
T ss_pred EEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCC----------------CCcccccChh-
Confidence 4455555555444455555555555555554442 222445555555555555 4444433333
Q ss_pred hhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCC
Q 005168 82 EFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAP 153 (710)
Q Consensus 82 ~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 153 (710)
.|.++++|++|++++|+++++ ++|++|++++|.+++ ++...+..+++|+.|++++|.+....+..+ ..
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~ 175 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDM---SS 175 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECHHHH---HT
T ss_pred hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccccChhhh---hh
Confidence 566666666666666655542 556666666666653 222233446666666666666655444332 22
Q ss_pred CCccc--EEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcc-----cccCccCcc
Q 005168 154 NFQLQ--SLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSL-----AGPFWLPIH 226 (710)
Q Consensus 154 ~~~L~--~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-----~~~~~~~~~ 226 (710)
..+++ .|++ .++.+.+..|..+ ....|+.|++++|.. .+..+ ..+.+++...+.-..+ ....+..+.
T Consensus 176 l~~L~~l~L~l-~~n~l~~~~~~~~-~~~~L~~L~l~~~~~---~~~~~-~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~ 249 (606)
T 3t6q_A 176 LQQATNLSLNL-NGNDIAGIEPGAF-DSAVFQSLNFGGTQN---LLVIF-KGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249 (606)
T ss_dssp TTTCCSEEEEC-TTCCCCEECTTTT-TTCEEEEEECTTCSC---HHHHH-HHTTTCEEEEEECCCCTTSCCCCCCGGGGG
T ss_pred hcccceeEEec-CCCccCccChhHh-hhccccccccCCchh---HHHHh-hhccccchhheechhhccccccccChhHhc
Confidence 33444 5666 5555554444433 335666777766642 22222 3444433333221111 111222233
Q ss_pred CCC--CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCC
Q 005168 227 SHK--RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVN 304 (710)
Q Consensus 227 ~~~--~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~ 304 (710)
.+. +|++|++++|.++ .++...+..+++|++|++++|.++ .+|..+.++++|++|++++|.+. .++...+.++++
T Consensus 250 ~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~ 326 (606)
T 3t6q_A 250 GLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPS 326 (606)
T ss_dssp GGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCS-BGGGGCGGGCTT
T ss_pred hhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcC-cCchhhhhccCc
Confidence 332 5667777777776 455554444677777777777776 45566677777777777777776 454445556777
Q ss_pred CcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccccc--chhhcCCCCCCEEECCCCcCcccCCCCC
Q 005168 305 LQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI--PVEFCQLYSLQILDISDNNISGSLPSCF 382 (710)
Q Consensus 305 L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~ls~n~i~~~~~~~~ 382 (710)
|++|++++|.+.. ...+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+
T Consensus 327 L~~L~l~~n~~~~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 396 (606)
T 3t6q_A 327 LTHLSIKGNTKRL----------ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396 (606)
T ss_dssp CSEEECCSCSSCC----------BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT
T ss_pred CCEEECCCCCccc----------ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh
Confidence 7777776665542 022344667777777777777776554 5667777777777777777777766666
Q ss_pred C-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCccccc
Q 005168 383 H-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGS 461 (710)
Q Consensus 383 ~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 461 (710)
. +++|++|++++|.+.+. ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++.
T Consensus 397 ~~l~~L~~L~l~~n~l~~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 464 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVK------------DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464 (606)
T ss_dssp TTCTTCSEEECTTCCEECC------------TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG
T ss_pred cCCccCCeEECCCCcCCCc------------ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcc
Confidence 5 67777776666665431 1234477889999999999999988888999999999999999998763
Q ss_pred C-C--CCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCC
Q 005168 462 I-P--PCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTR 538 (710)
Q Consensus 462 ~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 538 (710)
. + ..+.. +++|+.|++++|.+++..|..|.++++
T Consensus 465 ~~~~~~~~~~-------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 501 (606)
T 3t6q_A 465 NIQKTNSLQT-------------------------------------------LGRLEILVLSFCDLSSIDQHAFTSLKM 501 (606)
T ss_dssp EECSSCGGGG-------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ccccchhhcc-------------------------------------------CCCccEEECCCCccCccChhhhccccC
Confidence 2 2 23333 558999999999999999999999999
Q ss_pred CCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCC-CccccccCCccccc
Q 005168 539 IQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE-WTAQFATFNKSSYE 617 (710)
Q Consensus 539 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~ 617 (710)
|++|+|++|+++++.|+.|.++++| .|++++|++++..|+.+..+++|+.+++++|++.|.|+. |+..|..-......
T Consensus 502 L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~ 580 (606)
T 3t6q_A 502 MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLE 580 (606)
T ss_dssp CCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEE
T ss_pred CCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCccccc
Confidence 9999999999999999999999999 999999999999999999999999999999999999873 22222111111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 005168 618 GNTFLCGLPLPICRSPATMSEASIGNERD 646 (710)
Q Consensus 618 ~n~~~c~~~~~~c~~~~~~~~~~~~~~~~ 646 (710)
+ .....|..|...++..+...+.
T Consensus 581 ~------~~~~~C~~p~~~~g~~l~~~~~ 603 (606)
T 3t6q_A 581 D------TEDTLCENPPLLRGVRLSDVTL 603 (606)
T ss_dssp C------GGGCBEEESGGGTTCBGGGCCC
T ss_pred C------CCCCeeCCchHhCCCeeeeeec
Confidence 0 1112578887777775555443
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-51 Score=466.78 Aligned_cols=524 Identities=21% Similarity=0.219 Sum_probs=410.2
Q ss_pred eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHH
Q 005168 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIR 81 (710)
Q Consensus 2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~ 81 (710)
+|.++..++.++ ..+. +.+++|++++|.++ .++..+|.++++|++|+|++|.++ .+++.
T Consensus 17 ~~c~~~~l~~iP-~~l~--~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~-----------------~~~~~ 75 (606)
T 3t6q_A 17 YNCENLGLNEIP-GTLP--NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY-----------------WIHED 75 (606)
T ss_dssp EECTTSCCSSCC-TTSC--TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCC-----------------EECTT
T ss_pred EECCCCCcccCc-CCCC--CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccc-----------------eeChh
Confidence 577778888554 4443 37899999999998 455589999999999999988876 55555
Q ss_pred hhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCC
Q 005168 82 EFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAP 153 (710)
Q Consensus 82 ~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 153 (710)
+|.++++|++|++++|++++. ++|++|++++|.+++ ++...+.++++|++|++++|++....... ..+
T Consensus 76 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~ 151 (606)
T 3t6q_A 76 TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPK---GFP 151 (606)
T ss_dssp TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCT---TCC
T ss_pred hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcccccCccc---ccC
Confidence 899999999999999987543 677777777777763 33345677777777777777766543222 223
Q ss_pred CCcccEEEecCCCCCCCccChhccCCCCCC--EEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCC
Q 005168 154 NFQLQSLSLSSSYGDGVTFPKFLYHQHDLE--YVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRL 231 (710)
Q Consensus 154 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~--~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 231 (710)
.++|++|++ .++.+.+..+..+..+++|+ .|++++|.+.+..|..+ ....|+.|++++|.. .+..+..+..+
T Consensus 152 l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~---~~~~~~~l~~~ 225 (606)
T 3t6q_A 152 TEKLKVLDF-QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQN---LLVIFKGLKNS 225 (606)
T ss_dssp CTTCCEEEC-CSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSC---HHHHHHHTTTC
T ss_pred CcccCEEEc-ccCcccccChhhhhhhcccceeEEecCCCccCccChhHh--hhccccccccCCchh---HHHHhhhcccc
Confidence 556777777 66666655566666666666 66777777666555543 345667777766641 12223333333
Q ss_pred CEEEcccCcCc----ccCChhhhhcCC--CccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCC
Q 005168 232 GILDISNNNIR----GHIPVEIGDVLP--SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNL 305 (710)
Q Consensus 232 ~~L~ls~n~i~----~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L 305 (710)
+...+.-..+. ..++...+..+. +|+.|++++|.+.++.+..|.++++|++|++++|.++ .+|..+. ++++|
T Consensus 226 ~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L 303 (606)
T 3t6q_A 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTL 303 (606)
T ss_dssp EEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTC
T ss_pred chhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhc-ccccC
Confidence 32222211111 023333333333 7999999999999998889999999999999999998 8888754 79999
Q ss_pred cEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccccc-chhhcCCCCCCEEECCCCcCcccC--CCCC
Q 005168 306 QFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI-PVEFCQLYSLQILDISDNNISGSL--PSCF 382 (710)
Q Consensus 306 ~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ls~n~i~~~~--~~~~ 382 (710)
++|++++|.+.. ..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+.. +..+
T Consensus 304 ~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 372 (606)
T 3t6q_A 304 KKLVLSANKFEN-----------LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372 (606)
T ss_dssp CEEECTTCCCSB-----------GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred CEEECccCCcCc-----------CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc
Confidence 999998888764 56778999999999999999988555 455999999999999999999875 5555
Q ss_pred C-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCc-ccCCCCCCCEEEccCCcccc
Q 005168 383 H-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPV-QLCELNQLQLLDLSNNSLHG 460 (710)
Q Consensus 383 ~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~ 460 (710)
. +++|++|++++|.+.+ ..|..+..+++|++|++++|++++..+. .+..+++|++|++++|.+.+
T Consensus 373 ~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 439 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEPLS-------------LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439 (606)
T ss_dssp TTCTTCCEEECCSCSCEE-------------ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT
T ss_pred ccCCCCCEEECCCCcCCc-------------CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC
Confidence 5 8999999887776653 6677888999999999999999876654 48999999999999999998
Q ss_pred cCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCC---CCccccccC
Q 005168 461 SIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGH---IPPQIGNLT 537 (710)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~ 537 (710)
..|..+.. +++|+.|++++|++++. .+..+..++
T Consensus 440 ~~~~~~~~-------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~ 476 (606)
T 3t6q_A 440 SSEQLFDG-------------------------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLG 476 (606)
T ss_dssp TCTTTTTT-------------------------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCT
T ss_pred cCHHHHhC-------------------------------------------CCCCCEEECCCCCCCccccccchhhccCC
Confidence 88888766 44899999999999863 346799999
Q ss_pred CCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCccccc
Q 005168 538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYE 617 (710)
Q Consensus 538 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 617 (710)
+|++|+|++|+++++.|..|.++++|++|++++|++++..|+.+..++.| .|++++|++++..|..+..+..++.+++.
T Consensus 477 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence 99999999999999999999999999999999999999999999999999 99999999999888888889999999999
Q ss_pred CCCCCCCCC
Q 005168 618 GNTFLCGLP 626 (710)
Q Consensus 618 ~n~~~c~~~ 626 (710)
+||+.|+|+
T Consensus 556 ~N~~~c~c~ 564 (606)
T 3t6q_A 556 QNPLDCTCS 564 (606)
T ss_dssp TCCEECSGG
T ss_pred CCCccccCC
Confidence 999999865
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-51 Score=465.72 Aligned_cols=556 Identities=18% Similarity=0.147 Sum_probs=419.9
Q ss_pred eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC--------CcccccEEecCCCc
Q 005168 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID--------KFVVSKELYLDDTG 73 (710)
Q Consensus 2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~--------~l~~l~~L~L~~~~ 73 (710)
+|.+++.++.++.. +. +++++|++++|.++ .++..+|.++++|++|++++|.++ ++++|++|+|++|.
T Consensus 16 ~~c~~~~l~~ip~~-~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 16 YQCMDQKLSKVPDD-IP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EECTTSCCSSCCTT-SC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEccCCCcccCCCC-CC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 67788888866553 32 78888888888888 455578888888888888888765 56788888888888
Q ss_pred ceeecCHHhhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccccccCcccccCCCCCcEEEccCCccccccc
Q 005168 74 FKGTLDIREFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEIT 145 (710)
Q Consensus 74 ~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~ 145 (710)
+++..|. .|.++++|++|++++|.+++. ++|++|++++|.+++......+.++++|+.|++++|++....+
T Consensus 92 l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 92 IQSFSPG-SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCTT-SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred ccccChh-hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 8754455 899999999999999987654 7899999999988742223568899999999999999887765
Q ss_pred ccccCCCCCCc-ccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccc-----
Q 005168 146 ESHSLTAPNFQ-LQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAG----- 219 (710)
Q Consensus 146 ~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----- 219 (710)
..+..+..... +.++++ .++.+....+.. +...+|++|++++|.+++......+.+++.++.+.+..+.+.+
T Consensus 171 ~~~~~l~~L~~~l~~L~l-~~n~l~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDM-SLNPIDFIQDQA-FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp TTTHHHHHCTTCCCEEEC-TTCCCCEECTTT-TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhhccccccceeec-cCCCcceeCccc-ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 54333222222 558999 777766444444 4445899999999988754433444889999988876544332
Q ss_pred -cCccCccCCC--CCCEEEc-ccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCC
Q 005168 220 -PFWLPIHSHK--RLGILDI-SNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIP 295 (710)
Q Consensus 220 -~~~~~~~~~~--~L~~L~l-s~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~ 295 (710)
..+..+..+. .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. .| .+..+++|++|++++|.+. .+|
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp 323 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFP 323 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCC
T ss_pred ccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-ccc
Confidence 1122223332 3566777 66778766666 4558999999999999975 44 7899999999999999995 898
Q ss_pred hhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccc--cchhhcCCCCCCEEECCCCc
Q 005168 296 EHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP--IPVEFCQLYSLQILDISDNN 373 (710)
Q Consensus 296 ~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~ls~n~ 373 (710)
. + .+++|++|++++|.... +..+..+++|++|++++|.+++. .+..+..+++|++|++++|.
T Consensus 324 ~-~--~l~~L~~L~l~~n~~~~-------------~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 387 (606)
T 3vq2_A 324 T-L--DLPFLKSLTLTMNKGSI-------------SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387 (606)
T ss_dssp C-C--CCSSCCEEEEESCSSCE-------------ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred c-C--CCCccceeeccCCcCcc-------------chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc
Confidence 3 3 79999999999986442 22577899999999999999876 37889999999999999999
Q ss_pred CcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCC-hhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEE
Q 005168 374 ISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP-DWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLD 452 (710)
Q Consensus 374 i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 452 (710)
+.+.+.....+++|+.|++++|.+.+ ..| ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 388 l~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 388 AIIMSANFMGLEELQHLDFQHSTLKR-------------VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp EEEECCCCTTCTTCCEEECTTSEEES-------------TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred cccchhhccCCCCCCeeECCCCccCC-------------ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 99877444448999999888887664 444 5788899999999999999998999999999999999
Q ss_pred ccCCcccc-cCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCc
Q 005168 453 LSNNSLHG-SIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPP 531 (710)
Q Consensus 453 L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 531 (710)
+++|.+++ .+|..+..+ ++|+.|++++|.+++..|.
T Consensus 455 l~~n~l~~~~~~~~~~~l-------------------------------------------~~L~~L~Ls~n~l~~~~~~ 491 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANT-------------------------------------------TNLTFLDLSKCQLEQISWG 491 (606)
T ss_dssp CTTCEEGGGEECSCCTTC-------------------------------------------TTCCEEECTTSCCCEECTT
T ss_pred CCCCcCCCcchHHhhccC-------------------------------------------CCCCEEECCCCcCCccChh
Confidence 99999987 467777664 4999999999999999999
Q ss_pred cccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCC-CCCEEeccCCccccccCCCcccccc
Q 005168 532 QIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK-TLEVFSVAYNNLSGEILEWTAQFAT 610 (710)
Q Consensus 532 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~ 610 (710)
.|.++++|++|+|++|+++++.|..|.++++|++|++++|+++ .+|..+..++ +|+.|++++|++.|.|+. .++..
T Consensus 492 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~--~~~~~ 568 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH--QKFLQ 568 (606)
T ss_dssp TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT--HHHHT
T ss_pred hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc--HHHHH
Confidence 9999999999999999999999999999999999999999999 6666688887 699999999999999874 22222
Q ss_pred CCcccccCCCCCC-CCCCCCCCCCCCCCCccCCCCCCCc
Q 005168 611 FNKSSYEGNTFLC-GLPLPICRSPATMSEASIGNERDDN 648 (710)
Q Consensus 611 ~~~~~~~~n~~~c-~~~~~~c~~~~~~~~~~~~~~~~~~ 648 (710)
|... +.... +.....|..|...++..+.+++.+.
T Consensus 569 ~l~~----~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~~ 603 (606)
T 3vq2_A 569 WVKE----QKQFLVNVEQMTCATPVEMNTSLVLDFNNST 603 (606)
T ss_dssp TTTT----SSSSBSSGGGCCCC-----------------
T ss_pred HHHc----CcccccCCccceeCCChHhCCCEeeeccccc
Confidence 2111 11111 1111268888888777666655443
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-51 Score=479.91 Aligned_cols=513 Identities=22% Similarity=0.171 Sum_probs=387.2
Q ss_pred CEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC--------CcccccEEecCCCcceeecCHHhhcCCCCCCEEEcc
Q 005168 24 RSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID--------KFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMS 95 (710)
Q Consensus 24 ~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~--------~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls 95 (710)
+..+.+++.++ .+| . -.++|++|+|++|.|+ ++++|++|+|++|...+.+++.+|.++++|++|+|+
T Consensus 7 ~~~dcs~~~L~-~vP-~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVP-Q---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSS-CCC-S---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCC-CCC-C---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 46778888888 788 3 5689999999999886 678889999999977778866689999999999999
Q ss_pred CCcCCCC--------CCCcEEEccccccccccCc-ccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCC
Q 005168 96 YNKIDNL--------VVPQELRLSDNHFRIPISL-EPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSY 166 (710)
Q Consensus 96 ~n~l~~~--------~~L~~L~L~~~~l~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 166 (710)
+|.+.+. ++|++|+|++|.+++..+. ..+.++++|+.|++++|.+....+.. .+...++|++|++ +++
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~--~~~~L~~L~~L~L-s~N 158 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP--SFGKLNSLKSIDF-SSN 158 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG--GGGTCSSCCEEEE-ESS
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch--hHhhCCCCCEEEC-CCC
Confidence 9876543 6777777777777653332 23667777777777777765543221 1344557777777 666
Q ss_pred CCCCccChhccCC--CCCCEEEccCCcCcccCChhHhhcCCC------CcEEEccCCcccccCccCccC---CCCCCEEE
Q 005168 167 GDGVTFPKFLYHQ--HDLEYVRLSHIKMNGEFPNWLLENNTK------LATLFLVNDSLAGPFWLPIHS---HKRLGILD 235 (710)
Q Consensus 167 ~~~~~~~~~l~~~--~~L~~L~ls~~~~~~~~~~~~~~~l~~------L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~ 235 (710)
.+.+..+..+..+ ++|+.|+++.|.+.+..|..+ ..+++ |+.|++++|.+.+..+..+.. ...++.+.
T Consensus 159 ~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp CCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred cCCeeCHHHcccccCCccceEECCCCccccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 6666666666554 677777777777766555433 23333 777777777666555544432 24566666
Q ss_pred cccCc---------CcccCChhhhhc--CCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCC
Q 005168 236 ISNNN---------IRGHIPVEIGDV--LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVN 304 (710)
Q Consensus 236 ls~n~---------i~~~~~~~~~~~--~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~ 304 (710)
++.+. +. ......+.. .++|+.|++++|.+.+..+..|..+++|+.|++++|.++ .++...|.++++
T Consensus 238 l~~~~~~~~~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~ 315 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDN 315 (844)
T ss_dssp CCSSCCBCSSSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTCSS
T ss_pred cccccccccccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-CCChHHhcCCCC
Confidence 65322 22 111111111 267889999999888888888888999999999999888 666667778888
Q ss_pred CcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCC
Q 005168 305 LQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHP 384 (710)
Q Consensus 305 L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~ 384 (710)
|++|++++|.+.. ..+..|.++++|++|++++|.+....+..|.++++|++|++++|.++++.. +
T Consensus 316 L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~ 380 (844)
T 3j0a_A 316 LQVLNLSYNLLGE-----------LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----I 380 (844)
T ss_dssp CCEEEEESCCCSC-----------CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----C
T ss_pred CCEEECCCCCCCc-----------cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----C
Confidence 9988887777654 567788889999999999999888888888889999999999998875433 6
Q ss_pred CCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCC-cccCCCCCCCEEEccCCcccccCC
Q 005168 385 LSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNSLHGSIP 463 (710)
Q Consensus 385 ~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~ 463 (710)
++|+.+++++|.++. +|.. ..+++.|++++|++++... ..+..+++|+.|++++|++++..+
T Consensus 381 ~~L~~L~l~~N~l~~--------------l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 443 (844)
T 3j0a_A 381 PSIPDIFLSGNKLVT--------------LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443 (844)
T ss_dssp CSCSEEEEESCCCCC--------------CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred CCcchhccCCCCccc--------------cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc
Confidence 788888888887762 2322 4679999999999986543 235689999999999999986544
Q ss_pred CC-cccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCC-----CCCCccccccC
Q 005168 464 PC-FDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLI-----GHIPPQIGNLT 537 (710)
Q Consensus 464 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~ 537 (710)
.. +.. +++|+.|++++|.++ +..+..|.+++
T Consensus 444 ~~~~~~-------------------------------------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~ 480 (844)
T 3j0a_A 444 DQTPSE-------------------------------------------NPSLEQLFLGENMLQLAWETELCWDVFEGLS 480 (844)
T ss_dssp SSSSCS-------------------------------------------CTTCCBCEEESCCCSSSCCSCCCSSCSSCBC
T ss_pred cccccc-------------------------------------------CCccccccCCCCccccccccccchhhhcCcc
Confidence 32 221 458999999999997 44456789999
Q ss_pred CCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCccccc
Q 005168 538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYE 617 (710)
Q Consensus 538 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 617 (710)
+|++|+|++|.++++++..|.++++|+.|+|++|++++..+..+. ++|+.|++++|.+++..|..+ ..+..+++.
T Consensus 481 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~ 555 (844)
T 3j0a_A 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDIT 555 (844)
T ss_dssp CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEE
T ss_pred cccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEec
Confidence 999999999999999999999999999999999999987777665 899999999999999888754 467788899
Q ss_pred CCCCCCCCCC
Q 005168 618 GNTFLCGLPL 627 (710)
Q Consensus 618 ~n~~~c~~~~ 627 (710)
+||+.|+|+.
T Consensus 556 ~Np~~C~c~~ 565 (844)
T 3j0a_A 556 HNKFICECEL 565 (844)
T ss_dssp EECCCCSSSC
T ss_pred CCCccccccc
Confidence 9999999875
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.2e-49 Score=448.22 Aligned_cols=500 Identities=18% Similarity=0.155 Sum_probs=369.2
Q ss_pred CCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC--------CcccccEEecCCCcceeecCHHhhcCCCCCCEEE
Q 005168 22 SLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID--------KFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLD 93 (710)
Q Consensus 22 ~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~--------~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~ 93 (710)
.-++++.+++.++ .+| ..+. +++++|+|++|.++ ++++|++|++++|.+++..|. +|.++++|++|+
T Consensus 12 ~~~~~~c~~~~l~-~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~ 86 (606)
T 3vq2_A 12 PNITYQCMDQKLS-KVP-DDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK-AWHGLHHLSNLI 86 (606)
T ss_dssp TTTEEECTTSCCS-SCC-TTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEE
T ss_pred CCCceEccCCCcc-cCC-CCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHH-HhhchhhcCEeE
Confidence 3468999999998 788 4443 78999999999876 556677777777777633333 677777777777
Q ss_pred ccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCC-cc
Q 005168 94 MSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGV-TF 172 (710)
Q Consensus 94 Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~ 172 (710)
+++|++++. ....+.++++|++|++++|++....+.. +....+|++|++ +++.+.+ .+
T Consensus 87 Ls~n~l~~~-----------------~p~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L-~~n~l~~~~l 145 (606)
T 3vq2_A 87 LTGNPIQSF-----------------SPGSFSGLTSLENLVAVETKLASLESFP---IGQLITLKKLNV-AHNFIHSCKL 145 (606)
T ss_dssp CTTCCCCCC-----------------CTTSSTTCTTCCEEECTTSCCCCSSSSC---CTTCTTCCEEEC-CSSCCCCCCC
T ss_pred CCCCccccc-----------------ChhhcCCcccCCEEEccCCccccccccc---cCCCCCCCEEeC-CCCcccceec
Confidence 777765543 2234555666666666666655443322 333446666666 4444443 45
Q ss_pred ChhccCCCCCCEEEccCCcCcccCChhHhhcCCC----CcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChh
Q 005168 173 PKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTK----LATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVE 248 (710)
Q Consensus 173 ~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~ 248 (710)
|..+..+++|++|++++|.+++..+..+ ..+.+ +++|++++|.+.+..+..+... +|++|++++|.+++.....
T Consensus 146 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~ 223 (606)
T 3vq2_A 146 PAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKT 223 (606)
T ss_dssp CGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHH
T ss_pred hHhHhhcCCCCEEEccCCcceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHH
Confidence 6666666666666666666665444433 23332 3366666666665555555444 6666666666654222222
Q ss_pred hhhcCCCccEE--------------------------------Ec-cCCcCcccCCccCcCCCCCCEEeccCCccCCcCC
Q 005168 249 IGDVLPSLYVF--------------------------------NI-SMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIP 295 (710)
Q Consensus 249 ~~~~~~~L~~L--------------------------------~L-~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~ 295 (710)
....+++++.+ ++ ..+.+.+..|. |..+++|+.|++++|.+. .+|
T Consensus 224 ~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~ 301 (606)
T 3vq2_A 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE 301 (606)
T ss_dssp HHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC
T ss_pred HhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh
Confidence 22224444444 44 55666666665 888899999999999887 777
Q ss_pred hhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCc
Q 005168 296 EHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS 375 (710)
Q Consensus 296 ~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~ 375 (710)
.+..+++|++|++++|.+. .+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.+.
T Consensus 302 --~l~~~~~L~~L~l~~n~l~------------~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 302 --DVPKHFKWQSLSIIRCQLK------------QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp --CCCTTCCCSEEEEESCCCS------------SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEE
T ss_pred --hccccccCCEEEcccccCc------------ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccC
Confidence 4557888999988888774 355 44 8899999999999655333 6778999999999999988
Q ss_pred ccC--CCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCC-cccCCCCCCCEE
Q 005168 376 GSL--PSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP-VQLCELNQLQLL 451 (710)
Q Consensus 376 ~~~--~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 451 (710)
+.. +..+. +++|++|++++|.+. .+|..+..+++|++|++++|++.+..+ ..+..+++|++|
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~--------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAI--------------IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEE--------------EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCcchhhhhccCCcccEeECCCCccc--------------cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 763 43343 789999988888766 345677889999999999999998777 678999999999
Q ss_pred EccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCC-CCC
Q 005168 452 DLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIG-HIP 530 (710)
Q Consensus 452 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~ 530 (710)
++++|.+.+..|..+..+ ++|+.|++++|.+++ ..|
T Consensus 430 ~l~~n~l~~~~~~~~~~l-------------------------------------------~~L~~L~l~~n~l~~~~~~ 466 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGL-------------------------------------------TSLNTLKMAGNSFKDNTLS 466 (606)
T ss_dssp ECTTSCCEECCTTTTTTC-------------------------------------------TTCCEEECTTCEEGGGEEC
T ss_pred ECcCCCCCccchhhhcCC-------------------------------------------CCCCEEECCCCcCCCcchH
Confidence 999999998888888664 489999999999997 478
Q ss_pred ccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccc-
Q 005168 531 PQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFA- 609 (710)
Q Consensus 531 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~- 609 (710)
..|..+++|++|+|++|.++++.|..|.++++|++|++++|++++..|..+..+++|+.|++++|+++ .+|.++..+.
T Consensus 467 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~ 545 (606)
T 3vq2_A 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPK 545 (606)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCT
T ss_pred HhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999 4666577776
Q ss_pred cCCcccccCCCCCCCCCC
Q 005168 610 TFNKSSYEGNTFLCGLPL 627 (710)
Q Consensus 610 ~~~~~~~~~n~~~c~~~~ 627 (710)
.++.+++.+||+.|+|+.
T Consensus 546 ~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 546 SLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TCCEEECCSCCCCCSSTT
T ss_pred cCcEEEccCCCcccCCcc
Confidence 589999999999999775
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-46 Score=421.00 Aligned_cols=491 Identities=19% Similarity=0.164 Sum_probs=290.8
Q ss_pred ecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC--------CcccccEEecCCCcc
Q 005168 3 NLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID--------KFVVSKELYLDDTGF 74 (710)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~--------~l~~l~~L~L~~~~~ 74 (710)
|.++..++.++. .+ .+++++|++++|.++ .++..+|.++++|++|+|++|+++ ++++|++|++++|.+
T Consensus 13 ~c~~~~l~~ip~-~l--~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 13 QCMELNFYKIPD-NL--PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp ECCSSCCSSCCS-SS--CSSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EeCCCCccccCC-Cc--cccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 344444554333 22 235666666666665 344356666666666666666544 344555555555555
Q ss_pred eeecCHHhhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccc
Q 005168 75 KGTLDIREFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITE 146 (710)
Q Consensus 75 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 146 (710)
+ .+++..|.++++|++|++++|+++++ ++|++|++++|.+++......+.++++|+.|++++|++....+.
T Consensus 89 ~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 89 Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp C-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred C-ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 5 44444777777777777777766543 45566666666555311123455666666666666665544333
Q ss_pred cccCCCCCCcc----cEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcc-----
Q 005168 147 SHSLTAPNFQL----QSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSL----- 217 (710)
Q Consensus 147 ~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----- 217 (710)
.+.. ..++ .++++ .++.+.+..+..+... +|+.|++++|..........+..+++++.+.+....+
T Consensus 168 ~~~~---l~~L~~~~~~L~l-~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 168 DLRV---LHQMPLLNLSLDL-SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp GGHH---HHTCTTCCCEEEC-TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred Hccc---hhccchhhhhccc-CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 2211 1122 45555 4444444444433332 4556665555332211111224455554444322111
Q ss_pred -cccCccCccCCCC--CCEEEcccC-cCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCc
Q 005168 218 -AGPFWLPIHSHKR--LGILDISNN-NIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE 293 (710)
Q Consensus 218 -~~~~~~~~~~~~~--L~~L~ls~n-~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~ 293 (710)
.......+..+.+ ++.++++++ .+.+.+|..+.. +++|++|++++|.+. .+|..+..+ +|++|++++|.+. .
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~ 318 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-Q 318 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-S
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-c
Confidence 1111111222222 233444444 333333333322 455555555555554 244444444 5555555555554 4
Q ss_pred CChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccccc--chhhcCCCCCCEEECCC
Q 005168 294 IPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI--PVEFCQLYSLQILDISD 371 (710)
Q Consensus 294 i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~ls~ 371 (710)
+|.. .+++|++|++++|.+.. ..+. ..+++|++|++++|.+.+.. +..+.++++|++|++++
T Consensus 319 l~~~---~l~~L~~L~l~~n~~~~-----------~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~ 382 (570)
T 2z63_A 319 FPTL---KLKSLKRLTFTSNKGGN-----------AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382 (570)
T ss_dssp CCBC---BCSSCCEEEEESCBSCC-----------BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS
T ss_pred cCcc---cccccCEEeCcCCcccc-----------cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCC
Confidence 4441 34455555555444332 1111 34455555555555554332 44455555555555555
Q ss_pred CcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCC-cccCCCCCCCE
Q 005168 372 NNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP-VQLCELNQLQL 450 (710)
Q Consensus 372 n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 450 (710)
|.+.+. |..+..+++|++|++++|.+.+..+ ..+..+++|++
T Consensus 383 n~l~~~-------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 383 NGVITM-------------------------------------SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp CSEEEE-------------------------------------EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred Cccccc-------------------------------------cccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 544422 2225667888999999988886655 46788899999
Q ss_pred EEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCC-CCC
Q 005168 451 LDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLI-GHI 529 (710)
Q Consensus 451 L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~ 529 (710)
|++++|.+.+..|..+..+ ++|+.|++++|.++ +..
T Consensus 426 L~l~~n~l~~~~~~~~~~l-------------------------------------------~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGL-------------------------------------------SSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp EECTTSCCEECCTTTTTTC-------------------------------------------TTCCEEECTTCEEGGGEE
T ss_pred EeCcCCcccccchhhhhcC-------------------------------------------CcCcEEECcCCcCccccc
Confidence 9999999888888777663 48999999999887 467
Q ss_pred CccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCC
Q 005168 530 PPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE 603 (710)
Q Consensus 530 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 603 (710)
|..|..+++|++|+|++|+++++.|..|..+++|++|++++|++++..|+.+..+++|+.|++++|++.|.||.
T Consensus 463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 88899999999999999999999999999999999999999999988888899999999999999999999985
No 12
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.2e-45 Score=418.27 Aligned_cols=545 Identities=19% Similarity=0.165 Sum_probs=393.5
Q ss_pred CeecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCH
Q 005168 1 MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI 80 (710)
Q Consensus 1 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~ 80 (710)
+||||+|+|+.+.+.+|.++++|++|+|++|+|+ .++.++|.++++|++|+|++|+++ .+|+
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~-----------------~l~~ 117 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-----------------SLAL 117 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC-----------------EECG
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC-----------------CCCH
Confidence 3677777777777777777777777777777777 565567777777777777777765 5665
Q ss_pred HhhcCCCCCCEEEccCCcCCCC--------CCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCC
Q 005168 81 REFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTA 152 (710)
Q Consensus 81 ~~~~~l~~L~~L~Ls~n~l~~~--------~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 152 (710)
..|.++++|++|++++|+++++ ++|++|++++|.++.......+..+++|+.|++++|++....+..+..+.
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 5677777777777777765544 56777777777766432334567788888888888888776665543332
Q ss_pred CCC-cccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCc------ccccCccCc
Q 005168 153 PNF-QLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDS------LAGPFWLPI 225 (710)
Q Consensus 153 ~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~------~~~~~~~~~ 225 (710)
... ....+++ ..+.+.. ++........++.++++++......+...+..+..++...+..+. +.......+
T Consensus 198 ~l~~~~~~~~l-s~n~l~~-i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 198 QMPLLNLSLDL-SLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp TCTTCCCEEEC-TTCCCCE-ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhhhhhhhhc-ccCcccc-cCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 222 3446666 5554443 333333445677788887766554444455677777766654322 222333445
Q ss_pred cCCCCCCEEEcccCcCcc---cCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCC
Q 005168 226 HSHKRLGILDISNNNIRG---HIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGC 302 (710)
Q Consensus 226 ~~~~~L~~L~ls~n~i~~---~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l 302 (710)
..+..+...++..+.... .++. .+....+++.+.+.++.+.... .+.....|+.|++++|.+. .++.. .+
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~---~l 348 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIID-LFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFG-QFPTL---KL 348 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTT-TTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEES-SCCCC---BC
T ss_pred ccccchhhhhhhhhhhcccccchhh-hhhhhccccccccccccccccc--ccccchhhhhhhccccccc-CcCcc---cc
Confidence 566666666665544331 1122 2334678999999988877543 3566788999999999887 55543 46
Q ss_pred CCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccc--ccchhhcCCCCCCEEECCCCcCcccCCC
Q 005168 303 VNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG--PIPVEFCQLYSLQILDISDNNISGSLPS 380 (710)
Q Consensus 303 ~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~i~~~~~~ 380 (710)
+.|+.++++.|.... +.....+++|+.|++++|.+.. ..+..+..+.+|+.++++.+.+....+.
T Consensus 349 ~~L~~l~l~~n~~~~-------------~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~ 415 (635)
T 4g8a_A 349 KSLKRLTFTSNKGGN-------------AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN 415 (635)
T ss_dssp TTCCEEEEESCCSCC-------------BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC
T ss_pred hhhhhcccccccCCC-------------Ccccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc
Confidence 788888888777543 2345578899999999998754 3566777889999999999998877776
Q ss_pred CCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCccc-
Q 005168 381 CFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH- 459 (710)
Q Consensus 381 ~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~- 459 (710)
...+.+|+.+++..+..... ..+..+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+.
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~------------~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~ 483 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQM------------SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 483 (635)
T ss_dssp CTTCTTCCEEECTTSEEEST------------TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred ccccccccchhhhhcccccc------------ccccccccccccccccccccccccccccccccchhhhhhhhhhccccc
Confidence 66688999998887765532 22355778899999999999999888999999999999999999854
Q ss_pred ccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCC
Q 005168 460 GSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRI 539 (710)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 539 (710)
+..|..|.. +++|+.|+|++|++++..|..|.++++|
T Consensus 484 ~~~~~~~~~-------------------------------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 484 NFLPDIFTE-------------------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp GEECSCCTT-------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCchhhhh-------------------------------------------ccccCEEECCCCccCCcChHHHcCCCCC
Confidence 456777766 4489999999999999999999999999
Q ss_pred CEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccC-CCCCEEeccCCccccccCCCccccccCCcccccC
Q 005168 540 QTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEG 618 (710)
Q Consensus 540 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~ 618 (710)
++|+|++|+|+++++..|.++++|++|+|++|+|++..|+.+..+ ++|+.|++++|||.|+|.. .++..|....
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~--~~~~~wl~~~--- 595 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH--QSFLQWIKDQ--- 595 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG--HHHHHHHHHT---
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc--HHHHHHHHhC---
Confidence 999999999999999999999999999999999999999999988 6899999999999999962 3333221110
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCC
Q 005168 619 NTFLCGLPLPICRSPATMSEASIGNER 645 (710)
Q Consensus 619 n~~~c~~~~~~c~~~~~~~~~~~~~~~ 645 (710)
....-+.....|..|...++.++..++
T Consensus 596 ~~~~~~~~~~~C~~P~~~~g~~l~~~~ 622 (635)
T 4g8a_A 596 RQLLVEVERMECATPSDKQGMPVLSLN 622 (635)
T ss_dssp TTTBSCGGGCBBCSSTTTTTCBGGGCC
T ss_pred CCccCCCCCceeCCchHHCCCEeeeec
Confidence 001111111268889888888666554
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.1e-45 Score=408.26 Aligned_cols=476 Identities=17% Similarity=0.121 Sum_probs=313.1
Q ss_pred eecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC--------CcccccEEecCCCc
Q 005168 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID--------KFVVSKELYLDDTG 73 (710)
Q Consensus 2 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~--------~l~~l~~L~L~~~~ 73 (710)
.|++++.++.++...+ ++|++|++++|.+++ ++..+|.++++|++|++++|+++ ++++|++|++++|.
T Consensus 10 c~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT---AAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EECTTSCCSSCCSCCC---TTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCccccccccCC---CCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 4678888987766432 789999999999984 44478999999999999988876 33444445555554
Q ss_pred ceeecCHHhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCC
Q 005168 74 FKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAP 153 (710)
Q Consensus 74 ~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~ 153 (710)
++ .+++..|.++++|++|++++|.+++. .....+.++++|+.|++++|+.....+. ..+..
T Consensus 86 l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~ 146 (549)
T 2z81_A 86 LS-SLSSSWFGPLSSLKYLNLMGNPYQTL----------------GVTSLFPNLTNLQTLRIGNVETFSEIRR--IDFAG 146 (549)
T ss_dssp CC-SCCHHHHTTCTTCCEEECTTCCCSSS----------------CSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTT
T ss_pred cC-ccCHHHhccCCCCcEEECCCCccccc----------------chhhhhhccCCccEEECCCCccccccCH--hhhhc
Confidence 44 23332455555555555555544421 1123467778888888888763322221 12344
Q ss_pred CCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccC--c-cCccCCCC
Q 005168 154 NFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPF--W-LPIHSHKR 230 (710)
Q Consensus 154 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~-~~~~~~~~ 230 (710)
.++|++|++ .++.+.+..|..+..+++|++|+++.|.+. .+|..++..+++|+.|++++|++.+.. + .....+++
T Consensus 147 l~~L~~L~L-~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 224 (549)
T 2z81_A 147 LTSLNELEI-KALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224 (549)
T ss_dssp CCEEEEEEE-EETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCC
T ss_pred ccccCeeec-cCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhc
Confidence 557888888 667777777777778888888888877764 455555566788888888888877642 1 22345677
Q ss_pred CCEEEcccCcCcccCChhhh---hcCCCccEEEccCCcCcccC------CccCcCCCCCCEEeccCCccCCcCC-----h
Q 005168 231 LGILDISNNNIRGHIPVEIG---DVLPSLYVFNISMNALDGSI------PSSFGNMKFLQLLDLSNNQLTGEIP-----E 296 (710)
Q Consensus 231 L~~L~ls~n~i~~~~~~~~~---~~~~~L~~L~L~~n~i~~~~------~~~f~~l~~L~~L~Ls~n~l~~~i~-----~ 296 (710)
|+.|++++|.+++..+..+. ..+++|+.+++++|.+.+.. ...+..+++|+.|+++++.+. ... .
T Consensus 225 L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~~~~l~ 303 (549)
T 2z81_A 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP-QFYLFYDLS 303 (549)
T ss_dssp CCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCS-CGGGSCCCC
T ss_pred ccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccc-hhhhcccch
Confidence 88888888877654443332 22567777777777665431 123345566666666666544 111 0
Q ss_pred hhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccc-cCCCccceeeCccCccccccch---hhcCCCCCCEEECCCC
Q 005168 297 HLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWL-GNLTWLIHIIMPENHLEGPIPV---EFCQLYSLQILDISDN 372 (710)
Q Consensus 297 ~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~ls~n 372 (710)
.++...++|++|++++|.+.. +|..+ ..+++|++|++++|.+.+..|. .+..+++|++|++++|
T Consensus 304 ~~~~~~~~L~~L~l~~n~l~~------------ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 371 (549)
T 2z81_A 304 TVYSLLEKVKRITVENSKVFL------------VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371 (549)
T ss_dssp HHHHHSTTCCEEEEESSCCCC------------CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred hhhhhcccceEEEeccCcccc------------CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence 111123344444444444331 23222 3444555555555544443321 2334444444444444
Q ss_pred cCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEE
Q 005168 373 NISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLD 452 (710)
Q Consensus 373 ~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 452 (710)
++++.. ..+..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 372 ~l~~~~----------------------------------~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~ 416 (549)
T 2z81_A 372 HLRSMQ----------------------------------KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN 416 (549)
T ss_dssp CCCCHH----------------------------------HHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEE
T ss_pred cccccc----------------------------------cchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEE
Confidence 443210 01134677899999999999998 5677888999999999
Q ss_pred ccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCcc
Q 005168 453 LSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQ 532 (710)
Q Consensus 453 L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 532 (710)
+++|.+++. |..+ ++.|+.|++++|++++..
T Consensus 417 Ls~N~l~~l-~~~~---------------------------------------------~~~L~~L~Ls~N~l~~~~--- 447 (549)
T 2z81_A 417 LSSTGIRVV-KTCI---------------------------------------------PQTLEVLDVSNNNLDSFS--- 447 (549)
T ss_dssp CTTSCCSCC-CTTS---------------------------------------------CTTCSEEECCSSCCSCCC---
T ss_pred CCCCCcccc-cchh---------------------------------------------cCCceEEECCCCChhhhc---
Confidence 999998743 3222 247999999999998653
Q ss_pred ccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccC
Q 005168 533 IGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL 602 (710)
Q Consensus 533 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 602 (710)
..+++|++|+|++|+++.+++ ...+++|++|+|++|++++..|+.+..+++|+.|++++|++.|.||
T Consensus 448 -~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 -LFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -CCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -ccCChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 578999999999999997654 4678999999999999999999899999999999999999999997
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.1e-45 Score=407.93 Aligned_cols=503 Identities=19% Similarity=0.173 Sum_probs=358.5
Q ss_pred CCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCC--------CcccccEEecCCCcceeecCHHhhcCCCCCCEEEc
Q 005168 23 LRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKID--------KFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDM 94 (710)
Q Consensus 23 L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~--------~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~L 94 (710)
.+..+-++..++ .+| ..+ -+++++|++++|.++ ++++|++|++++|.++ .+++.+|.++++|++|++
T Consensus 9 ~~~~~c~~~~l~-~ip-~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 83 (570)
T 2z63_A 9 NITYQCMELNFY-KIP-DNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83 (570)
T ss_dssp TTEEECCSSCCS-SCC-SSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCcc-ccC-CCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeC
Confidence 456777777777 677 333 257999999999876 3445555555555554 233324555555555555
Q ss_pred cCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCC-ccC
Q 005168 95 SYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGV-TFP 173 (710)
Q Consensus 95 s~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~ 173 (710)
++|++++ ++...+.++++|++|++++|++....... +....+|++|++ +++.+.+ .+|
T Consensus 84 ~~n~l~~-----------------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~---~~~l~~L~~L~L-~~n~l~~~~lp 142 (570)
T 2z63_A 84 TGNPIQS-----------------LALGAFSGLSSLQKLVAVETNLASLENFP---IGHLKTLKELNV-AHNLIQSFKLP 142 (570)
T ss_dssp TTCCCCE-----------------ECTTTTTTCTTCCEEECTTSCCCCSTTCS---CTTCTTCCEEEC-CSSCCCCCCCC
T ss_pred cCCcCCc-----------------cCHhhhcCccccccccccccccccCCCcc---ccccccccEEec-CCCccceecCh
Confidence 5554432 33345677777777777777766544322 344557777777 5555554 467
Q ss_pred hhccCCCCCCEEEccCCcCcccCChhHhhcCCCC----cEEEccCCcccccCccCccCCCCCCEEEcccCcCccc-CChh
Q 005168 174 KFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKL----ATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGH-IPVE 248 (710)
Q Consensus 174 ~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~-~~~~ 248 (710)
..+..+++|++|++++|.+++..+..+ ..+++| +.|++++|.+.+..+..+... +|+.|++++|..... ++..
T Consensus 143 ~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~ 220 (570)
T 2z63_A 143 EYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTC 220 (570)
T ss_dssp GGGGGCTTCCEEECTTSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHH
T ss_pred hhhcccCCCCEEeCcCCccceecHHHc-cchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhh
Confidence 777778888888888887776555544 566666 778888888877777666655 688888877743321 2222
Q ss_pred hhhcCCCccEEEccCCc------CcccCCccCcCCCC--CCEEeccCC-ccCCcCChhhhcCCCCCcEEEccCCCCcCee
Q 005168 249 IGDVLPSLYVFNISMNA------LDGSIPSSFGNMKF--LQLLDLSNN-QLTGEIPEHLAVGCVNLQFLMLSNNSLKEGL 319 (710)
Q Consensus 249 ~~~~~~~L~~L~L~~n~------i~~~~~~~f~~l~~--L~~L~Ls~n-~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l 319 (710)
...+++++.+.+.... +.......|.++++ ++.++++++ .+.+.+| ..+..+++|++|++++|.+.+
T Consensus 221 -~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~-- 296 (570)
T 2z63_A 221 -IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVTIER-- 296 (570)
T ss_dssp -HHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST-TTTGGGTTCSEEEEESCEECS--
T ss_pred -hcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch-hhhcCcCcccEEEecCccchh--
Confidence 2235555555443221 22222333444433 345566665 4553333 344467788888877776653
Q ss_pred eccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccc
Q 005168 320 YLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHR 399 (710)
Q Consensus 320 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~ 399 (710)
+|..+..+ +|++|++++|.+... |. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++
T Consensus 297 ----------l~~~~~~~-~L~~L~l~~n~~~~l-~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~ 361 (570)
T 2z63_A 297 ----------VKDFSYNF-GWQHLELVNCKFGQF-PT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSF 361 (570)
T ss_dssp ----------CCBCCSCC-CCSEEEEESCBCSSC-CB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBE
T ss_pred ----------hhhhhccC-CccEEeeccCccccc-Cc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCc
Confidence 56666677 888888888887733 32 4677888888888887765554 447788888777776653
Q ss_pred cccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCC-CCcccccccccccCC
Q 005168 400 QLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP-PCFDNTTLYESYNNS 478 (710)
Q Consensus 400 ~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~~ 478 (710)
.. ..|..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..| ..+..
T Consensus 362 ~~-----------~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~---------- 419 (570)
T 2z63_A 362 KG-----------CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS---------- 419 (570)
T ss_dssp EE-----------EEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT----------
T ss_pred cc-----------cccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc----------
Confidence 21 2367788899999999999999866555 8999999999999999987665 34544
Q ss_pred CCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCC-CCCchhh
Q 005168 479 SSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLT-GLIPSTF 557 (710)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 557 (710)
+++|+.|++++|.+.+..|..|.++++|++|++++|.++ +..|..|
T Consensus 420 ---------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~ 466 (570)
T 2z63_A 420 ---------------------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466 (570)
T ss_dssp ---------------------------------CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred ---------------------------------CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh
Confidence 458999999999999999999999999999999999998 5678899
Q ss_pred cCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCC
Q 005168 558 SNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL 627 (710)
Q Consensus 558 ~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 627 (710)
..+++|++|++++|++++..|..+..+++|+.|++++|.+++..+..+..++.++.+++.+|++.|+||.
T Consensus 467 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999999999998899999999999999999999998888888899999999999999999764
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.8e-45 Score=403.97 Aligned_cols=457 Identities=20% Similarity=0.171 Sum_probs=349.1
Q ss_pred CeecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCH
Q 005168 1 MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI 80 (710)
Q Consensus 1 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~ 80 (710)
+||+++|.++.++.. +. ++|++|++++|.++ .++.++|.++++|++|+|++|+++ .+++
T Consensus 4 ~l~ls~n~l~~ip~~-~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~-----------------~~~~ 62 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKD-LS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ-----------------YLDI 62 (520)
T ss_dssp EEECTTSCCSSCCCS-CC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCC-----------------EEEG
T ss_pred eEecCCCCccccccc-cc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccC-----------------CcCh
Confidence 489999999976544 43 89999999999998 566688999999999999988876 5544
Q ss_pred HhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEE
Q 005168 81 REFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSL 160 (710)
Q Consensus 81 ~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 160 (710)
..|.++++|++|++++|+++.+ +.. .+++|++|++++|++..
T Consensus 63 ~~~~~l~~L~~L~Ls~N~l~~l-----------------p~~---~l~~L~~L~L~~N~l~~------------------ 104 (520)
T 2z7x_B 63 SVFKFNQELEYLDLSHNKLVKI-----------------SCH---PTVNLKHLDLSFNAFDA------------------ 104 (520)
T ss_dssp GGGTTCTTCCEEECCSSCCCEE-----------------ECC---CCCCCSEEECCSSCCSS------------------
T ss_pred HHhhcccCCCEEecCCCceeec-----------------Ccc---ccCCccEEeccCCcccc------------------
Confidence 4899999999999999887743 111 46677777776665532
Q ss_pred EecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCC--cEEEccCCcc--cccCccCccCCC-CCCEEE
Q 005168 161 SLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKL--ATLFLVNDSL--AGPFWLPIHSHK-RLGILD 235 (710)
Q Consensus 161 ~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~~~-~L~~L~ 235 (710)
..+|..+..+++|++|++++|.+++. . +..+++| ++|++++|.+ .+..|..+..+. ....++
T Consensus 105 ---------~~~p~~~~~l~~L~~L~L~~n~l~~~---~-~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 105 ---------LPICKEFGNMSQLKFLGLSTTHLEKS---S-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ---------CCCCGGGGGCTTCCEEEEEESSCCGG---G-GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred ---------ccchhhhccCCcceEEEecCcccchh---h-ccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 13456677778888888888877652 2 2566777 8888888888 666666666555 233567
Q ss_pred cccCcCcccCChhhhhcCCCccEEEccCCc-------CcccCCccCcCCCCCCEEeccCCccCCcCChhhhc--CCCCCc
Q 005168 236 ISNNNIRGHIPVEIGDVLPSLYVFNISMNA-------LDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAV--GCVNLQ 306 (710)
Q Consensus 236 ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~-------i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~--~l~~L~ 306 (710)
+++|.+.+.++...+..+++|+.|++++|. +.+..+ .|..+++|+.|++++|.+++..+..... ..++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 888888777777666668889999999886 555555 6888899999999988876433322221 246888
Q ss_pred EEEccCCCCcCeeeccCccCccCcCccc-----cCCCccceeeCccCccccccchhhcCC---CCCCEEECCCCcCcccC
Q 005168 307 FLMLSNNSLKEGLYLTNNSLSGNIPGWL-----GNLTWLIHIIMPENHLEGPIPVEFCQL---YSLQILDISDNNISGSL 378 (710)
Q Consensus 307 ~L~Ls~n~l~~~l~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~ls~n~i~~~~ 378 (710)
+|++++|.+.. .+|..+ ..++.|+.+++++|.+ ......+..+ .+|+.|++++|.+....
T Consensus 251 ~L~l~~n~l~~-----------~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~ 318 (520)
T 2z7x_B 251 YFSISNVKLQG-----------QLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318 (520)
T ss_dssp EEEEEEEEEES-----------CCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred EEEeecccccC-----------ccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc
Confidence 88877776553 566666 8899999999999988 3332455544 67999999999887543
Q ss_pred CCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccc--cCCcccCCCCCCCEEEccCC
Q 005168 379 PSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEG--EVPVQLCELNQLQLLDLSNN 456 (710)
Q Consensus 379 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n 456 (710)
. ...+++|++|++++|.+++ ..|.++..+++|++|++++|++++ ..|..+..+++|++|++++|
T Consensus 319 ~-~~~l~~L~~L~Ls~n~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 319 C-PSKISPFLHLDFSNNLLTD-------------TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp C-CSSCCCCCEEECCSSCCCT-------------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred c-hhhCCcccEEEeECCccCh-------------hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 1 1247889999777766553 567788889999999999999986 44577999999999999999
Q ss_pred cccccCCC-CcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccc
Q 005168 457 SLHGSIPP-CFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGN 535 (710)
Q Consensus 457 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 535 (710)
.+.+.+|. .+.. +++|+.|++++|.+++..|..+.
T Consensus 385 ~l~~~l~~~~~~~-------------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~- 420 (520)
T 2z7x_B 385 SVSYDEKKGDCSW-------------------------------------------TKSLLSLNMSSNILTDTIFRCLP- 420 (520)
T ss_dssp CCBCCGGGCSCCC-------------------------------------------CTTCCEEECCSSCCCGGGGGSCC-
T ss_pred cCCcccccchhcc-------------------------------------------CccCCEEECcCCCCCcchhhhhc-
Confidence 99874443 3444 45899999999999877776654
Q ss_pred cCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccC
Q 005168 536 LTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL 602 (710)
Q Consensus 536 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 602 (710)
++|+.|+|++|+++.++ ..+..+++|++|++++|+++...+..+..+++|+.|++++|++.|.|+
T Consensus 421 -~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 421 -PRIKVLDLHSNKIKSIP-KQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp -TTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -ccCCEEECCCCcccccc-hhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 79999999999999654 445599999999999999995444458999999999999999999986
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.8e-44 Score=399.59 Aligned_cols=496 Identities=18% Similarity=0.186 Sum_probs=367.1
Q ss_pred CCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHhhcCCCCCCEEEccCCcC
Q 005168 20 LSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKI 99 (710)
Q Consensus 20 l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l 99 (710)
|+...+.+.+++.++ .+|. .+. ++|++|++++|.++ .+++..|.++++|++|++++|++
T Consensus 4 C~~~~~c~~~~~~l~-~ip~-~~~--~~L~~L~Ls~n~l~-----------------~~~~~~~~~l~~L~~L~Ls~n~i 62 (549)
T 2z81_A 4 CDASGVCDGRSRSFT-SIPS-GLT--AAMKSLDLSFNKIT-----------------YIGHGDLRACANLQVLILKSSRI 62 (549)
T ss_dssp ECTTSEEECTTSCCS-SCCS-CCC--TTCCEEECCSSCCC-----------------EECSSTTSSCTTCCEEECTTSCC
T ss_pred CCCCceEECCCCccc-cccc-cCC--CCccEEECcCCccC-----------------ccChhhhhcCCcccEEECCCCCc
Confidence 555666788889888 7883 332 78899999988776 33333666677777777766665
Q ss_pred CCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCC-ccChhccC
Q 005168 100 DNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGV-TFPKFLYH 178 (710)
Q Consensus 100 ~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~ 178 (710)
++. +...+.++++|++|++++|++....+.. +...++|++|++ +++.+.+ ..|..+..
T Consensus 63 ~~~-----------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L-s~n~l~~~~~~~~~~~ 121 (549)
T 2z81_A 63 NTI-----------------EGDAFYSLGSLEHLDLSDNHLSSLSSSW---FGPLSSLKYLNL-MGNPYQTLGVTSLFPN 121 (549)
T ss_dssp CEE-----------------CTTTTTTCTTCCEEECTTSCCCSCCHHH---HTTCTTCCEEEC-TTCCCSSSCSSCSCTT
T ss_pred Ccc-----------------ChhhccccccCCEEECCCCccCccCHHH---hccCCCCcEEEC-CCCcccccchhhhhhc
Confidence 532 2233445555555555555554443322 223345556666 4444443 34566778
Q ss_pred CCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccE
Q 005168 179 QHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYV 258 (710)
Q Consensus 179 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~ 258 (710)
+++|++|++++|...+.+|...+.++++|++|++++|++.+..|..+..+++|++|++++|.+. .+|..++..+++|++
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~ 200 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRY 200 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSE
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccE
Confidence 8899999999988555666544578999999999999999988999999999999999999987 777777766899999
Q ss_pred EEccCCcCcccC---CccCcCCCCCCEEeccCCccCCcCChhh---hcCCCCCcEEEccCCCCcCeeeccCccCccCcCc
Q 005168 259 FNISMNALDGSI---PSSFGNMKFLQLLDLSNNQLTGEIPEHL---AVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG 332 (710)
Q Consensus 259 L~L~~n~i~~~~---~~~f~~l~~L~~L~Ls~n~l~~~i~~~~---~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~ 332 (710)
|++++|.+.+.. ......+++|+.|++++|.+.+..+..+ +..+++|+.+++++|.+...-++ ......
T Consensus 201 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~-----~~~~~~ 275 (549)
T 2z81_A 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF-----NPSESD 275 (549)
T ss_dssp EEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC-----CCCTTT
T ss_pred EEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc-----cccchh
Confidence 999999988642 2234567899999999998875444333 24578899999988876542111 111223
Q ss_pred cccCCCccceeeCccCccccc-----cchhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEEccCccccccccccCC
Q 005168 333 WLGNLTWLIHIIMPENHLEGP-----IPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLS 406 (710)
Q Consensus 333 ~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~ 406 (710)
.+..+++|+.|.+.++.+... .+..+...++|++|++++|.+..++...+. +++|++|++++|.+.+..+.
T Consensus 276 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~--- 352 (549)
T 2z81_A 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK--- 352 (549)
T ss_dssp CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHH---
T ss_pred hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcccccccc---
Confidence 456788899999988876532 223345567899999999998866555543 88999998888877653210
Q ss_pred CccCcccCChhhhcCCCccEEecCCCcccccCC--cccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccc
Q 005168 407 YNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP--VQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEK 484 (710)
Q Consensus 407 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (710)
.+..++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..
T Consensus 353 -------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------- 408 (549)
T 2z81_A 353 -------NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW---------------- 408 (549)
T ss_dssp -------HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC----------------
T ss_pred -------chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc----------------
Confidence 02235678999999999999986543 45889999999999999998 45665544
Q ss_pred cccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCC
Q 005168 485 FEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIE 564 (710)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 564 (710)
+++|+.|++++|.+++. |..+ .++|++|+|++|+++++. ..+++|+
T Consensus 409 ---------------------------~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~ 454 (549)
T 2z81_A 409 ---------------------------PEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQ 454 (549)
T ss_dssp ---------------------------CTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred ---------------------------cccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhc
Confidence 44899999999999854 3333 268999999999999764 5789999
Q ss_pred EEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168 565 SLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 626 (710)
Q Consensus 565 ~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 626 (710)
+|++++|+++ .+|+ ...+++|++|++++|++++..+.++..+..++.+++.+|++.|+||
T Consensus 455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999999999 5665 4679999999999999999888888999999999999999999986
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.9e-45 Score=410.07 Aligned_cols=474 Identities=19% Similarity=0.203 Sum_probs=345.7
Q ss_pred cccEEecCCCcceeecCHHhhcCCCCCCEEEccCCcCCCC------------------CCCcEEEccccccccccCcccc
Q 005168 63 VSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL------------------VVPQELRLSDNHFRIPISLEPL 124 (710)
Q Consensus 63 ~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~------------------~~L~~L~L~~~~l~~~~~~~~l 124 (710)
+.+.|+|+++.+.|.+|+ +++++++|++|+|++|.+... ..++ ++++.+.+.+..+...-
T Consensus 82 ~V~~L~L~~~~l~g~lp~-~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CEEEEECTTSCCEEEECG-GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGSC
T ss_pred CEEEEEecCcccCCcCCh-HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCchhhHH
Confidence 456777778888899998 999999999999999976211 1122 33333333322221111
Q ss_pred cCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecC-CCCCCCccChhccCCCCCCEEEccCCcCccc--------
Q 005168 125 FNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSS-SYGDGVTFPKFLYHQHDLEYVRLSHIKMNGE-------- 195 (710)
Q Consensus 125 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~-------- 195 (710)
..+..+..+++....+.. .....++.+.+.. ++.+++ +|..++++++|++|++++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~---------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKK---------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229 (636)
T ss_dssp HHHHHHHHHCTTSCCCCC---------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred HHHHHHhhcCcccccccc---------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence 011111112222111110 0111223333311 345555 888999999999999999999885
Q ss_pred ---------CChhHhh--cCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCc-Ccc-cCChhhhhc-----CCCcc
Q 005168 196 ---------FPNWLLE--NNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNN-IRG-HIPVEIGDV-----LPSLY 257 (710)
Q Consensus 196 ---------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~-i~~-~~~~~~~~~-----~~~L~ 257 (710)
+|..+ . ++++|++|++++|.+.+.+|..+..+++|++|++++|. +++ .+|..++.. +++|+
T Consensus 230 ~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~ 308 (636)
T 4eco_A 230 ENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308 (636)
T ss_dssp TTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC
T ss_pred cccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC
Confidence 77776 5 89999999999999999999999999999999999998 887 788887652 38999
Q ss_pred EEEccCCcCcccCCc--cCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcccc
Q 005168 258 VFNISMNALDGSIPS--SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG 335 (710)
Q Consensus 258 ~L~L~~n~i~~~~~~--~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~ 335 (710)
+|++++|.++ .+|. .|.++++|++|++++|.++|.+| .+..+++|++|++++|.+. .+|..+.
T Consensus 309 ~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~------------~lp~~l~ 373 (636)
T 4eco_A 309 IIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT------------EIPANFC 373 (636)
T ss_dssp EEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE------------ECCTTSE
T ss_pred EEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc------------cccHhhh
Confidence 9999999998 6777 89999999999999999988888 5667889999998888776 3677788
Q ss_pred CCCc-cceeeCccCccccccchhhcCCC--CCCEEECCCCcCcccCCCCCC--------CCCcceEEccCcccccccccc
Q 005168 336 NLTW-LIHIIMPENHLEGPIPVEFCQLY--SLQILDISDNNISGSLPSCFH--------PLSIEQVHLSKNMLHRQLKRD 404 (710)
Q Consensus 336 ~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~ls~n~i~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~ 404 (710)
.+++ |++|++++|.++ .+|..+.... +|++|++++|.+.+..|..+. +.+|+.|++++|.++.
T Consensus 374 ~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~----- 447 (636)
T 4eco_A 374 GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK----- 447 (636)
T ss_dssp EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-----
T ss_pred hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-----
Confidence 8998 999999999988 5677777654 899999999999887665443 4578888777776552
Q ss_pred CCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCC-------CCCEEEccCCcccccCCCCcc--cccccccc
Q 005168 405 LSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELN-------QLQLLDLSNNSLHGSIPPCFD--NTTLYESY 475 (710)
Q Consensus 405 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~ 475 (710)
..+..+..+++|++|++++|+++...+..+.... +|+.|++++|.++ .+|..+. .
T Consensus 448 --------lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~------- 511 (636)
T 4eco_A 448 --------FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT------- 511 (636)
T ss_dssp --------CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT-------
T ss_pred --------CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc-------
Confidence 3344566688999999999999854444444333 8999999999988 5555543 3
Q ss_pred cCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeC------CCccC
Q 005168 476 NNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNL------SYNNL 549 (710)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------s~n~l 549 (710)
+++|+.|+|++|++++ +|..+..+++|++|+| ++|++
T Consensus 512 ------------------------------------l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 512 ------------------------------------LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp ------------------------------------CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred ------------------------------------CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcc
Confidence 4589999999999997 7888889999999999 56778
Q ss_pred CCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCcccc--ccCCcccccCCCCCCCCC
Q 005168 550 TGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQF--ATFNKSSYEGNTFLCGLP 626 (710)
Q Consensus 550 ~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~--~~~~~~~~~~n~~~c~~~ 626 (710)
.+..|..+..+++|++|+|++|++. .+|..+. ++|+.|++++|++.+.-...+... .....+.+.....+++||
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred cccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence 8888999999999999999999994 6777655 789999999999887544332221 122233344445555543
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3e-41 Score=384.11 Aligned_cols=505 Identities=21% Similarity=0.211 Sum_probs=330.2
Q ss_pred ecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHh
Q 005168 3 NLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIRE 82 (710)
Q Consensus 3 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~ 82 (710)
|-++-.++.++. .+. +.+++|||++|.|+ .++..+|.++++|++|+|++|+|+ .+++.+
T Consensus 37 ~c~~~~l~~vP~-~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~-----------------~i~~~~ 95 (635)
T 4g8a_A 37 QCMELNFYKIPD-NLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-----------------TIEDGA 95 (635)
T ss_dssp ECTTSCCSSCCS-SSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCC-----------------EECTTT
T ss_pred ECCCCCcCccCC-CCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCC-----------------CcChhH
Confidence 344555665543 232 37999999999998 677789999999999999999887 787778
Q ss_pred hcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEe
Q 005168 83 FDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSL 162 (710)
Q Consensus 83 ~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l 162 (710)
|.++++|++|+|++|+++++ +...|.++++|++|++++|++....... +...++|++|++
T Consensus 96 f~~L~~L~~L~Ls~N~l~~l-----------------~~~~f~~L~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~~L~L 155 (635)
T 4g8a_A 96 YQSLSHLSTLILTGNPIQSL-----------------ALGAFSGLSSLQKLVAVETNLASLENFP---IGHLKTLKELNV 155 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEE-----------------CGGGGTTCTTCCEEECTTSCCCCSTTCC---CTTCTTCCEEEC
T ss_pred hcCCCCCCEEEccCCcCCCC-----------------CHHHhcCCCCCCEEECCCCcCCCCChhh---hhcCcccCeecc
Confidence 99999999999999987643 2233455555555555555554433222 223345555555
Q ss_pred cCCCCCCC-ccChhccCCCCCCEEEccCCcCcccCChhHhhcCCC----CcEEEccCCcccccCccCccCCCCCCEEEcc
Q 005168 163 SSSYGDGV-TFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTK----LATLFLVNDSLAGPFWLPIHSHKRLGILDIS 237 (710)
Q Consensus 163 ~~~~~~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls 237 (710)
+++.+.. ..|..+..+++|++|++++|.+++..+..+ ..+.+ ...++++.|.+....+..+. ...++.+++.
T Consensus 156 -s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~ 232 (635)
T 4g8a_A 156 -AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLR 232 (635)
T ss_dssp -CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEE
T ss_pred -ccCccccCCCchhhccchhhhhhcccCccccccccccc-cchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhh
Confidence 3333322 344555556666666666666655444433 22222 23455566655544433332 2234455555
Q ss_pred cCcCcccCChhhhhcCCCccEEEcc------------------------------CCcCc---ccCCccCcCCCCCCEEe
Q 005168 238 NNNIRGHIPVEIGDVLPSLYVFNIS------------------------------MNALD---GSIPSSFGNMKFLQLLD 284 (710)
Q Consensus 238 ~n~i~~~~~~~~~~~~~~L~~L~L~------------------------------~n~i~---~~~~~~f~~l~~L~~L~ 284 (710)
+|.....++...+..++.++...+. .+... ...+..+..+.+++.++
T Consensus 233 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 312 (635)
T 4g8a_A 233 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFS 312 (635)
T ss_dssp SCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEE
T ss_pred cccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccc
Confidence 5543322233333334444433332 22111 11122334445555555
Q ss_pred ccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCC
Q 005168 285 LSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSL 364 (710)
Q Consensus 285 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 364 (710)
+.++.+. .++.. ....+|+.|++++|.+.. ..+ ..++.|+.+++..|.+... ..+..+++|
T Consensus 313 ~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~-----------~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L 373 (635)
T 4g8a_A 313 LVSVTIE-RVKDF--SYNFGWQHLELVNCKFGQ-----------FPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSL 373 (635)
T ss_dssp EESCEEE-ECGGG--GSCCCCSEEEEESCEESS-----------CCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTC
T ss_pred ccccccc-ccccc--ccchhhhhhhcccccccC-----------cCc---ccchhhhhcccccccCCCC--ccccccccc
Confidence 5555554 33322 234455555555554432 222 2345666667766665532 233456777
Q ss_pred CEEECCCCcCcccCCC---CCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccC-Cc
Q 005168 365 QILDISDNNISGSLPS---CFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEV-PV 440 (710)
Q Consensus 365 ~~L~ls~n~i~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~ 440 (710)
+.+++++|.+...... .+...+++.+++..+... ..+..+..+++|+.++++++...... +.
T Consensus 374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~--------------~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 439 (635)
T 4g8a_A 374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI--------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 439 (635)
T ss_dssp CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE--------------EECSCCTTCTTCCEEECTTSEEESTTSSC
T ss_pred ccchhhccccccccccccchhhhhhhhhhhccccccc--------------cccccccccccccchhhhhcccccccccc
Confidence 7777777776543221 112556777766665543 23445667888899998888776444 34
Q ss_pred ccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEEC
Q 005168 441 QLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYL 520 (710)
Q Consensus 441 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 520 (710)
.|..+++++.+++++|.+.+..+..+.. ++.++.|++
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~-------------------------------------------~~~L~~L~L 476 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFNG-------------------------------------------LSSLEVLKM 476 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTT-------------------------------------------CTTCCEEEC
T ss_pred cccccccccccccccccccccccccccc-------------------------------------------chhhhhhhh
Confidence 5788888999999999888777777655 448999999
Q ss_pred cCCcC-CCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCcccc
Q 005168 521 SCNKL-IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG 599 (710)
Q Consensus 521 ~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~ 599 (710)
++|.+ .+..|..|..+++|++|+|++|++++++|.+|.++++|++|+|++|+|++..|..|..+++|++|++++|++++
T Consensus 477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred hhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 99975 44578889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccc-ccCCcccccCCCCCCCCCC
Q 005168 600 EILEWTAQF-ATFNKSSYEGNTFLCGLPL 627 (710)
Q Consensus 600 ~~~~~~~~~-~~~~~~~~~~n~~~c~~~~ 627 (710)
..|.++..+ ..++.+++.+|||.|+|..
T Consensus 557 ~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 557 SKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 999888777 5788999999999999763
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3e-42 Score=395.23 Aligned_cols=442 Identities=18% Similarity=0.169 Sum_probs=323.4
Q ss_pred CCCcEEEccccccccccCcccccCCCCCcEEEc-cCCcccccccccccC-------------------------------
Q 005168 103 VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHA-KNNQMNAEITESHSL------------------------------- 150 (710)
Q Consensus 103 ~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L-~~n~~~~~~~~~~~~------------------------------- 150 (710)
..++.|+|+++.+.|.++ ..+.+++.|+.|+| ++|.+....+.....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 467788888888888777 56888999999999 777654431110000
Q ss_pred -----------------CCCCCcccEEEecC-CCCCCCccChhccCCCCCCEEEccCCcCcc-----------------c
Q 005168 151 -----------------TAPNFQLQSLSLSS-SYGDGVTFPKFLYHQHDLEYVRLSHIKMNG-----------------E 195 (710)
Q Consensus 151 -----------------~~~~~~L~~L~l~~-~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~-----------------~ 195 (710)
......++.+.+.. .+.+.+ +|..+..+++|+.|++++|.+++ .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00111222222211 133344 78888888899999999888887 3
Q ss_pred CChhH-hhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCc-Ccc-cCChhhhh------cCCCccEEEccCCcC
Q 005168 196 FPNWL-LENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNN-IRG-HIPVEIGD------VLPSLYVFNISMNAL 266 (710)
Q Consensus 196 ~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~-i~~-~~~~~~~~------~~~~L~~L~L~~n~i 266 (710)
+|..+ |.++++|+.|++++|.+.+.+|..+..+++|++|++++|+ +++ .+|..++. .+++|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 77765 3488888999998888888888888888889999998887 886 67776654 234888888888888
Q ss_pred cccCCc--cCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCc-ccee
Q 005168 267 DGSIPS--SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW-LIHI 343 (710)
Q Consensus 267 ~~~~~~--~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~-L~~L 343 (710)
. .+|. .|.++++|+.|++++|.++ .+| .+..+++|++|++++|.+. .+|..+..+++ |++|
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~------------~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE------------EIPEDFCAFTDQVEGL 624 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS------------CCCTTSCEECTTCCEE
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc------------cchHHHhhccccCCEE
Confidence 8 6676 7888888888888888888 888 5667888888888877765 36677888888 8889
Q ss_pred eCccCccccccchhhcCCCC--CCEEECCCCcCcccCCCCC------CCCCcceEEccCccccccccccCCCccCcccCC
Q 005168 344 IMPENHLEGPIPVEFCQLYS--LQILDISDNNISGSLPSCF------HPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP 415 (710)
Q Consensus 344 ~L~~n~l~~~~~~~~~~l~~--L~~L~ls~n~i~~~~~~~~------~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~ 415 (710)
++++|.+. .+|..+..++. |+.|++++|.+.+..+... ...+|+.|++++|.+. .+|
T Consensus 625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~--------------~lp 689 (876)
T 4ecn_A 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ--------------KFP 689 (876)
T ss_dssp ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC--------------SCC
T ss_pred ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC--------------ccC
Confidence 99888888 56677766654 8889999888877654332 2457888877776655 344
Q ss_pred hh-hhcCCCccEEecCCCcccccCCcccCCC-------CCCCEEEccCCcccccCCCCcccccccccccCCCCCcccccc
Q 005168 416 DW-IGELSQLSHLILGHNNLEGEVPVQLCEL-------NQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEI 487 (710)
Q Consensus 416 ~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (710)
.. +..+++|+.|+|++|+++...+..+... ++|+.|+|++|+++ .+|..+..
T Consensus 690 ~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~------------------- 749 (876)
T 4ecn_A 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA------------------- 749 (876)
T ss_dssp HHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST-------------------
T ss_pred HHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh-------------------
Confidence 44 4578899999999999884444334332 38999999999888 55555430
Q ss_pred ceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCC------ccCCCCCchhhcCCc
Q 005168 488 SFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSY------NNLTGLIPSTFSNLK 561 (710)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~ 561 (710)
..+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |.+.+..|..|.+++
T Consensus 750 ----------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 750 ----------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp ----------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred ----------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 014589999999999997 688888999999999976 788888899999999
Q ss_pred cCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCC
Q 005168 562 HIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLC 623 (710)
Q Consensus 562 ~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c 623 (710)
+|+.|+|++|++ +.+|..+. ++|+.|++++|++....+..+..........+..|+..+
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 999999999999 47777655 689999999999887655544444444444455555443
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-42 Score=384.28 Aligned_cols=438 Identities=21% Similarity=0.246 Sum_probs=321.9
Q ss_pred CeecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCH
Q 005168 1 MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI 80 (710)
Q Consensus 1 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~ 80 (710)
+|||++|.|+++.+.+|.++++|++|++++|++++ +.+++|.++++|++|+|++|+++ .+|.
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~-----------------~lp~ 86 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNKLV-----------------KISC 86 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECCSSCCC-----------------EEEC
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCC-cChHHhhcccCCCEEecCCCcee-----------------ecCc
Confidence 48999999999999999999999999999999994 54489999999999999999887 4444
Q ss_pred HhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcc--c
Q 005168 81 REFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQL--Q 158 (710)
Q Consensus 81 ~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L--~ 158 (710)
. .+++|++|++++|++++. .++ ..+.++++|+.|++++|++..... ....+| +
T Consensus 87 -~--~l~~L~~L~L~~N~l~~~---------------~~p-~~~~~l~~L~~L~L~~n~l~~~~~------~~l~~L~L~ 141 (520)
T 2z7x_B 87 -H--PTVNLKHLDLSFNAFDAL---------------PIC-KEFGNMSQLKFLGLSTTHLEKSSV------LPIAHLNIS 141 (520)
T ss_dssp -C--CCCCCSEEECCSSCCSSC---------------CCC-GGGGGCTTCCEEEEEESSCCGGGG------GGGTTSCEE
T ss_pred -c--ccCCccEEeccCCccccc---------------cch-hhhccCCcceEEEecCcccchhhc------cccccceee
Confidence 2 555666666666555432 011 234455555555555555443111 112233 5
Q ss_pred EEEecCCCCC--CCccChhccCCC-CCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCc-------ccccCccCccCC
Q 005168 159 SLSLSSSYGD--GVTFPKFLYHQH-DLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDS-------LAGPFWLPIHSH 228 (710)
Q Consensus 159 ~L~l~~~~~~--~~~~~~~l~~~~-~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~~~~~ 228 (710)
+|++ .++.+ .+..|..+..+. +...+++++|.+.+..+...+..+++|+.|++++|. +.+..+ .+..+
T Consensus 142 ~L~l-~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l 219 (520)
T 2z7x_B 142 KVLL-VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTN 219 (520)
T ss_dssp EEEE-EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGC
T ss_pred EEEe-ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccc
Confidence 5666 44444 444555554433 233556677777766666555677888888888776 555444 67788
Q ss_pred CCCCEEEcccCcCcccCChhhhh--cCCCccEEEccCCcCcccCCccC-----cCCCCCCEEeccCCccCCcCChhhhcC
Q 005168 229 KRLGILDISNNNIRGHIPVEIGD--VLPSLYVFNISMNALDGSIPSSF-----GNMKFLQLLDLSNNQLTGEIPEHLAVG 301 (710)
Q Consensus 229 ~~L~~L~ls~n~i~~~~~~~~~~--~~~~L~~L~L~~n~i~~~~~~~f-----~~l~~L~~L~Ls~n~l~~~i~~~~~~~ 301 (710)
++|+.|++++|.+++..+..+.. ..++|++|++++|.+.+.+|..+ .++++|+.+++++|.+ .+|...+..
T Consensus 220 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~ 297 (520)
T 2z7x_B 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYE 297 (520)
T ss_dssp TTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHH
T ss_pred cchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhc
Confidence 89999999988877543332221 14589999999999988888877 8889999999999988 566332222
Q ss_pred C---CCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccC
Q 005168 302 C---VNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSL 378 (710)
Q Consensus 302 l---~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~ 378 (710)
+ .+|+.|++++|.+.. . ..+..+++|++|++++|.+++..|..+..+++|++|++++|++.++.
T Consensus 298 ~~~~~~L~~L~l~~n~l~~-----------~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 364 (520)
T 2z7x_B 298 IFSNMNIKNFTVSGTRMVH-----------M--LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364 (520)
T ss_dssp HHHTCCCSEEEEESSCCCC-----------C--CCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred ccccCceeEEEcCCCcccc-----------c--cchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence 3 578888888887653 1 11257788888888888888777888888888888888888776321
Q ss_pred CCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCC-cccCCCCCCCEEEccCCc
Q 005168 379 PSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNS 457 (710)
Q Consensus 379 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~ 457 (710)
.+|..+..+++|++|++++|++++..| ..+..+++|+.|++++|.
T Consensus 365 ----------------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 365 ----------------------------------KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp ----------------------------------HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred ----------------------------------cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 334567788999999999999997444 458889999999999999
Q ss_pred ccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccC
Q 005168 458 LHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLT 537 (710)
Q Consensus 458 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 537 (710)
+++..|..+. ++|+.|++++|+++ .+|..+..++
T Consensus 411 l~~~~~~~l~---------------------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~ 444 (520)
T 2z7x_B 411 LTDTIFRCLP---------------------------------------------PRIKVLDLHSNKIK-SIPKQVVKLE 444 (520)
T ss_dssp CCGGGGGSCC---------------------------------------------TTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred CCcchhhhhc---------------------------------------------ccCCEEECCCCccc-ccchhhhcCC
Confidence 9876665442 38999999999999 6677777999
Q ss_pred CCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC
Q 005168 538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 578 (710)
Q Consensus 538 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~ 578 (710)
+|++|+|++|+++++++..|..+++|++|++++|++.+..+
T Consensus 445 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99999999999998877779999999999999999986544
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.6e-41 Score=379.46 Aligned_cols=367 Identities=19% Similarity=0.127 Sum_probs=261.9
Q ss_pred cccEEEecCCCCCCC-ccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCC--cEEEccCCcc--cccCccCccCCC-
Q 005168 156 QLQSLSLSSSYGDGV-TFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKL--ATLFLVNDSL--AGPFWLPIHSHK- 229 (710)
Q Consensus 156 ~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~~~- 229 (710)
+|++|++ +++.+.+ .+|..+..+++|++|++++|.+.+... ..+++| ++|++++|.+ .+..+..+..+.
T Consensus 122 ~L~~L~L-s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~ 196 (562)
T 3a79_B 122 SLRHLDL-SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196 (562)
T ss_dssp TCSEEEC-CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred cCCEEEC-CCCCccccCchHhhcccCcccEEecCCCccccCch----hhhhhceeeEEEeecccccccccCcccccccCc
Confidence 4444444 3333333 345667777888888888887765322 344555 8888888887 666666666544
Q ss_pred -CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcC-----cccCCccCcCCCCCCEEeccCCccCCc----CChhhh
Q 005168 230 -RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNAL-----DGSIPSSFGNMKFLQLLDLSNNQLTGE----IPEHLA 299 (710)
Q Consensus 230 -~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i-----~~~~~~~f~~l~~L~~L~Ls~n~l~~~----i~~~~~ 299 (710)
.+ .+++++|.+.+.++...+..+++|+.+++++|.. .+ ....|.++++|+.|+++++.+.+. ++...
T Consensus 197 ~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~- 273 (562)
T 3a79_B 197 TVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF- 273 (562)
T ss_dssp EEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-
T ss_pred ceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-
Confidence 23 5577888877667766666677888888888752 21 223567778888888887766532 22222
Q ss_pred cCCCCCcEEEccCCCCcCeeeccCccCccCcCccc-----cCCCccceeeCccCccccccchhhcC---CCCCCEEECCC
Q 005168 300 VGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWL-----GNLTWLIHIIMPENHLEGPIPVEFCQ---LYSLQILDISD 371 (710)
Q Consensus 300 ~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~ls~ 371 (710)
..++|++|++++|.+. +.+|..+ ..++.|+.+++..+.+ ......+.. ..+|++|++++
T Consensus 274 -~~~~L~~L~l~~n~l~-----------~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 274 -WPRPVEYLNIYNLTIT-----------ERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp -TTSSEEEEEEEEEEEC-----------SCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEES
T ss_pred -hcccccEEEEeccEee-----------ccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccC
Confidence 2457888877766654 3456555 6677777777777766 222233332 26799999999
Q ss_pred CcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccC--CcccCCCCCCC
Q 005168 372 NNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEV--PVQLCELNQLQ 449 (710)
Q Consensus 372 n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~ 449 (710)
|.+..... ...+++|++|++++|.+++ ..|.++..+++|++|++++|++++.. |..+..+++|+
T Consensus 341 n~~~~~~~-~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 406 (562)
T 3a79_B 341 TPFIHMVC-PPSPSSFTFLNFTQNVFTD-------------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406 (562)
T ss_dssp SCCCCCCC-CSSCCCCCEEECCSSCCCT-------------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred CCcccccC-ccCCCCceEEECCCCcccc-------------chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC
Confidence 98864331 1237789999777666553 66778888999999999999998643 46689999999
Q ss_pred EEEccCCcccccCCC-CcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCC
Q 005168 450 LLDLSNNSLHGSIPP-CFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGH 528 (710)
Q Consensus 450 ~L~L~~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 528 (710)
+|++++|.+++.+|. .+.. +++|+.|++++|++++.
T Consensus 407 ~L~l~~N~l~~~~~~~~~~~-------------------------------------------l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 407 TLDVSLNSLNSHAYDRTCAW-------------------------------------------AESILVLNLSSNMLTGS 443 (562)
T ss_dssp EEECTTSCCBSCCSSCCCCC-------------------------------------------CTTCCEEECCSSCCCGG
T ss_pred EEECCCCcCCCccChhhhcC-------------------------------------------cccCCEEECCCCCCCcc
Confidence 999999999874443 4544 45899999999999876
Q ss_pred CCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCC
Q 005168 529 IPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE 603 (710)
Q Consensus 529 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 603 (710)
.|..+. ++|++|+|++|+++.+++..+ .+++|++|++++|+++...+..+..+++|+.|++++|+|.|.|+.
T Consensus 444 ~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 444 VFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp GGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 665544 799999999999997765555 999999999999999954444489999999999999999999873
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.3e-41 Score=378.09 Aligned_cols=364 Identities=17% Similarity=0.237 Sum_probs=277.9
Q ss_pred CcCcccCChhHhhcCCCCcEEEccCCccccc-----------------CccCcc--CCCCCCEEEcccCcCcccCChhhh
Q 005168 190 IKMNGEFPNWLLENNTKLATLFLVNDSLAGP-----------------FWLPIH--SHKRLGILDISNNNIRGHIPVEIG 250 (710)
Q Consensus 190 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~ls~n~i~~~~~~~~~ 250 (710)
|.+++ +|..+ .++++|++|++++|.+.+. +|..+. .+++|++|++++|.+.+.+|..+.
T Consensus 193 n~l~~-ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 193 NNITF-VSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp CEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCCcc-CCHHH-hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 34555 66664 6778888888888887775 677777 788888888888877777776666
Q ss_pred hcCCCccEEEccCCc-Ccc-cCCccCcCC------CCCCEEeccCCccCCcCCh-hhhcCCCCCcEEEccCCCCcCeeec
Q 005168 251 DVLPSLYVFNISMNA-LDG-SIPSSFGNM------KFLQLLDLSNNQLTGEIPE-HLAVGCVNLQFLMLSNNSLKEGLYL 321 (710)
Q Consensus 251 ~~~~~L~~L~L~~n~-i~~-~~~~~f~~l------~~L~~L~Ls~n~l~~~i~~-~~~~~l~~L~~L~Ls~n~l~~~l~l 321 (710)
. +++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. ..+.++++|++|++++|.+.
T Consensus 271 ~-l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~----- 343 (636)
T 4eco_A 271 A-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE----- 343 (636)
T ss_dssp T-CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE-----
T ss_pred c-CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc-----
Confidence 5 7788888888887 776 666666655 77888888888887 7776 34446778888777766654
Q ss_pred cCccCccCcCccccCCCccceeeCccCccccccchhhcCCCC-CCEEECCCCcCcccCCCCCC---CCCcceEEccCccc
Q 005168 322 TNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYS-LQILDISDNNISGSLPSCFH---PLSIEQVHLSKNML 397 (710)
Q Consensus 322 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~ls~n~i~~~~~~~~~---~~~L~~L~l~~n~l 397 (710)
|.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.+..+ |..+. +++|+.|++++|.+
T Consensus 344 ------g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 344 ------GKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp ------EECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSC-CSCCCTTCSSCEEEEECCSSCT
T ss_pred ------cchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCccc-chhhhhcccCccCEEECcCCcC
Confidence 2456 7788888888888888888 66777888888 88888888888844 33443 23688887766665
Q ss_pred cccccccCCCccCcccCChhhh-------cCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCccccc
Q 005168 398 HRQLKRDLSYNLLNGSIPDWIG-------ELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTT 470 (710)
Q Consensus 398 ~~~~~~~l~~n~~~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 470 (710)
.+ ..|..+. .+++|++|++++|++++..+..+..+++|++|++++|.++...+..+....
T Consensus 415 ~~-------------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 415 GS-------------VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp TT-------------TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred CC-------------cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 54 5555555 677999999999999966666677899999999999999844434443211
Q ss_pred ccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCcccc--ccCCCCEEeCCCcc
Q 005168 471 LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIG--NLTRIQTLNLSYNN 548 (710)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~ 548 (710)
...+.+++|+.|+|++|.++ .+|..+. .+++|++|+|++|+
T Consensus 482 ------------------------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 524 (636)
T 4eco_A 482 ------------------------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS 524 (636)
T ss_dssp ------------------------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC
T ss_pred ------------------------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC
Confidence 00012348999999999999 5777776 99999999999999
Q ss_pred CCCCCchhhcCCccCCEEeC------cCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCC
Q 005168 549 LTGLIPSTFSNLKHIESLDL------SYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFL 622 (710)
Q Consensus 549 l~~~~~~~~~~l~~L~~L~L------s~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~ 622 (710)
+++ .|..+..+++|++|+| ++|++.+.+|..+..+++|+.|++++|++ +.+|..+. +.++.+++.+|++.
T Consensus 525 l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 998 6788889999999999 56788889999999999999999999999 66777544 68889999999988
Q ss_pred CCC
Q 005168 623 CGL 625 (710)
Q Consensus 623 c~~ 625 (710)
|-.
T Consensus 601 ~~~ 603 (636)
T 4eco_A 601 SID 603 (636)
T ss_dssp EEE
T ss_pred ccc
Confidence 743
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-40 Score=381.74 Aligned_cols=450 Identities=18% Similarity=0.208 Sum_probs=271.2
Q ss_pred cccEEecCCCcceeecCHHhhcCCCCCCEEEc-cCCcCCCC---------------------------------------
Q 005168 63 VSKELYLDDTGFKGTLDIREFDSFNNLEVLDM-SYNKIDNL--------------------------------------- 102 (710)
Q Consensus 63 ~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~L-s~n~l~~~--------------------------------------- 102 (710)
+...|+|+++.+.|.+|+ .++++++|++|+| ++|.+++.
T Consensus 324 ~V~~L~Ls~~~L~G~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp CEEEEECTTTCCEEEECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CEEEEECccCCCCCcCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 466778888888899998 9999999999999 77754332
Q ss_pred --------------------CCCcEEEcc--ccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEE
Q 005168 103 --------------------VVPQELRLS--DNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSL 160 (710)
Q Consensus 103 --------------------~~L~~L~L~--~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L 160 (710)
..++.+.+. .|.+++ +| ..+.++++|+.|+|++|+++...... .+.+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~--~~~~------- 471 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-IS-KAIQRLTKLQIIYFANSPFTYDNIAV--DWED------- 471 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSS--SCSC-------
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hh-HHHhcCCCCCEEECcCCcCCCCcccc--cccc-------
Confidence 111112222 144443 33 23556666666666666655410000 0000
Q ss_pred EecCCCCCCCccChhcc--CCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCc-ccc-cCccCcc-------CCC
Q 005168 161 SLSSSYGDGVTFPKFLY--HQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDS-LAG-PFWLPIH-------SHK 229 (710)
Q Consensus 161 ~l~~~~~~~~~~~~~l~--~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~-------~~~ 229 (710)
. ..+...+.+|..++ .+++|++|++++|.+.+.+|..+ .++++|+.|++++|+ +.+ .+|..+. .++
T Consensus 472 -~-s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~ 548 (876)
T 4ecn_A 472 -A-NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548 (876)
T ss_dssp -T-TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTT
T ss_pred -c-ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccC
Confidence 0 00000012555544 55666666666666555555544 456666666666665 554 4443332 233
Q ss_pred CCCEEEcccCcCcccCCh--hhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCC-Cc
Q 005168 230 RLGILDISNNNIRGHIPV--EIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVN-LQ 306 (710)
Q Consensus 230 ~L~~L~ls~n~i~~~~~~--~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~-L~ 306 (710)
+|++|++++|.++ .+|. .+.. +++|+.|++++|.+. .+| .|.++++|+.|++++|.+. .+|..+. ++++ |+
T Consensus 549 ~L~~L~Ls~N~L~-~ip~~~~l~~-L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~ 622 (876)
T 4ecn_A 549 KIQIFYMGYNNLE-EFPASASLQK-MVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC-AFTDQVE 622 (876)
T ss_dssp TCCEEECCSSCCC-BCCCHHHHTT-CTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSC-EECTTCC
T ss_pred CccEEEeeCCcCC-ccCChhhhhc-CCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHh-hccccCC
Confidence 6666666666666 5655 3333 556666666666665 444 5666666666666666665 5555433 4555 66
Q ss_pred EEEccCCCCcCeeeccCccCccCcCccccCCCc--cceeeCccCccccccchh---hc--CCCCCCEEECCCCcCcccCC
Q 005168 307 FLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW--LIHIIMPENHLEGPIPVE---FC--QLYSLQILDISDNNISGSLP 379 (710)
Q Consensus 307 ~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~---~~--~l~~L~~L~ls~n~i~~~~~ 379 (710)
+|++++|.+.. +|..+..++. |+.|++++|.+.+..|.. +. .+++|+.|++++|.+..+++
T Consensus 623 ~L~Ls~N~L~~------------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~ 690 (876)
T 4ecn_A 623 GLGFSHNKLKY------------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690 (876)
T ss_dssp EEECCSSCCCS------------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH
T ss_pred EEECcCCCCCc------------CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH
Confidence 66665555442 3444444432 666666666665543321 11 22356666666666664444
Q ss_pred CCC-CCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccC--CCCCCCEEEccCC
Q 005168 380 SCF-HPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLC--ELNQLQLLDLSNN 456 (710)
Q Consensus 380 ~~~-~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n 456 (710)
..+ .+++|+.|++++|.+... +. ..+. ..+..+.++++|+.|+|++|+++ .+|..+. .+++|+.|+|++|
T Consensus 691 ~~~~~l~~L~~L~Ls~N~L~~i-p~----~~~~-~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 691 ELFATGSPISTIILSNNLMTSI-PE----NSLK-PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp HHHHTTCCCSEEECCSCCCSCC-CT----TSSS-CTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSS
T ss_pred HHHccCCCCCEEECCCCcCCcc-Ch----HHhc-cccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCC
Confidence 333 255666665555555411 10 0000 00011234458888888888888 5666665 8888889999888
Q ss_pred cccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcC------CcCCCCCC
Q 005168 457 SLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSC------NKLIGHIP 530 (710)
Q Consensus 457 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~------n~l~~~~~ 530 (710)
.+++ +|..+.. +++|+.|+|++ |.+.+.+|
T Consensus 764 ~L~~-lp~~l~~-------------------------------------------L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 764 CFSS-FPTQPLN-------------------------------------------SSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp CCSS-CCCGGGG-------------------------------------------CTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred CCCc-cchhhhc-------------------------------------------CCCCCEEECCCCCCcccccccccCh
Confidence 8886 5666554 34888888865 78888999
Q ss_pred ccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCcccc
Q 005168 531 PQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG 599 (710)
Q Consensus 531 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~ 599 (710)
..|..+++|++|+|++|.+..+ |..+. ++|+.|+|++|++....+..+.....+..+.+.+|++.+
T Consensus 800 ~~l~~L~~L~~L~Ls~N~L~~I-p~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSNDIRKV-DEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp TTGGGCSSCCEEECCSSCCCBC-CSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred HHHhcCCCCCEEECCCCCCCcc-CHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 9999999999999999999655 55454 699999999999998777777776667778888887765
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-39 Score=354.88 Aligned_cols=374 Identities=19% Similarity=0.159 Sum_probs=250.6
Q ss_pred cccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEE
Q 005168 156 QLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILD 235 (710)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 235 (710)
++++|++ +++.+.+..|..+..+++|++|++++|.+.+.++...+.++++|++|++++|++.+..|..+..+++|++|+
T Consensus 31 ~l~~L~L-s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 31 HVNYVDL-SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TCCEEEC-CSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred ccCEEEe-cCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 4555555 444444444555566666666666666665444443345666666666666666666666666666666666
Q ss_pred cccCcCcccCChh-hhhcCCCccEEEccCCcCcccCCcc-CcCCCCCCEEeccCCccCCcCChhhhcCC--CCCcEEEcc
Q 005168 236 ISNNNIRGHIPVE-IGDVLPSLYVFNISMNALDGSIPSS-FGNMKFLQLLDLSNNQLTGEIPEHLAVGC--VNLQFLMLS 311 (710)
Q Consensus 236 ls~n~i~~~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~-f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l--~~L~~L~Ls 311 (710)
+++|.+++.++.. .+..+++|++|++++|.+.+..|.. |.++++|++|++++|.+.+..+. .+..+ .+|+.|+++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLS 188 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh-hhhccccccccccccc
Confidence 6666665333222 2233566666666666666555544 56666666666666666532222 22222 455556555
Q ss_pred CCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCC---CCCCEEECCCCcCcccCCCCCCCCCcc
Q 005168 312 NNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQL---YSLQILDISDNNISGSLPSCFHPLSIE 388 (710)
Q Consensus 312 ~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~ls~n~i~~~~~~~~~~~~L~ 388 (710)
+|.+... ....+.......+..+++|++|++++|.+.+..+..+... .+|+.|++++|...+..
T Consensus 189 ~n~l~~~---~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---------- 255 (455)
T 3v47_A 189 SITLQDM---NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS---------- 255 (455)
T ss_dssp TCBCTTC---STTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC----------
T ss_pred cCccccc---chhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc----------
Confidence 5554420 0000000000112344566666666666665555554433 55666666665544321
Q ss_pred eEEccCccccccccccCCCccCcccCChhhhc--CCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCc
Q 005168 389 QVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGE--LSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCF 466 (710)
Q Consensus 389 ~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 466 (710)
+..+.+.+..+..+.. .++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..|
T Consensus 256 ----------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 319 (455)
T 3v47_A 256 ----------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319 (455)
T ss_dssp ----------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ----------------cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHh
Confidence 1122222223333333 3689999999999999999999999999999999999998888888
Q ss_pred ccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCC
Q 005168 467 DNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSY 546 (710)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 546 (710)
..+ ++|+.|++++|.+++..+..|.++++|++|+|++
T Consensus 320 ~~l-------------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 320 WGL-------------------------------------------THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp TTC-------------------------------------------TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred cCc-------------------------------------------ccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence 764 4899999999999988899999999999999999
Q ss_pred ccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCC
Q 005168 547 NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE 603 (710)
Q Consensus 547 n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 603 (710)
|+++++.|..|.++++|++|++++|++++..++.+..+++|+.|++++|+++|.||.
T Consensus 357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999999999999999987777889999999999999999999985
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-39 Score=364.72 Aligned_cols=457 Identities=18% Similarity=0.185 Sum_probs=326.2
Q ss_pred CeecCCCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCH
Q 005168 1 MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDI 80 (710)
Q Consensus 1 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~ 80 (710)
++|+++|.++.++.. +. ++|++|++++|.++ .++.++|.++++|++|+|++|+++ .+++
T Consensus 35 ~l~ls~~~L~~ip~~-~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~-----------------~~~~ 93 (562)
T 3a79_B 35 MVDYSNRNLTHVPKD-LP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-----------------SLDF 93 (562)
T ss_dssp EEECTTSCCCSCCTT-SC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCC-----------------EECT
T ss_pred EEEcCCCCCccCCCC-CC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCC-----------------cCCH
Confidence 489999999986654 42 89999999999999 566689999999999999999887 4544
Q ss_pred HhhcCCCCCCEEEccCCcCCCC-----CCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCC
Q 005168 81 REFDSFNNLEVLDMSYNKIDNL-----VVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNF 155 (710)
Q Consensus 81 ~~~~~l~~L~~L~Ls~n~l~~~-----~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~ 155 (710)
.+|.++++|++|++++|+++.+ ++|++|++++|.+++......+.++++|+.|++++|++..... ..+...
T Consensus 94 ~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~L- 169 (562)
T 3a79_B 94 HVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL---LPVAHL- 169 (562)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT---GGGTTS-
T ss_pred HHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch---hhhhhc-
Confidence 4677777777777777776644 5677777777777642112567888999999999988765322 112222
Q ss_pred cccEEEecCCCCC--CCccChhccCCC-CCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCccc----ccCccCccCC
Q 005168 156 QLQSLSLSSSYGD--GVTFPKFLYHQH-DLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLA----GPFWLPIHSH 228 (710)
Q Consensus 156 ~L~~L~l~~~~~~--~~~~~~~l~~~~-~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~ 228 (710)
+|++|++ .++.+ .+..|..+..+. ..-.+++++|.+.+..+...+..+++|+.+++++|+.. ......+..+
T Consensus 170 ~L~~L~L-~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l 248 (562)
T 3a79_B 170 HLSCILL-DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248 (562)
T ss_dssp CEEEEEE-EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSC
T ss_pred eeeEEEe-ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhcc
Confidence 4588888 66666 666666665543 12255777887777666665567788888888877411 1112345667
Q ss_pred CCCCEEEcccCcCcccCChhhh--hcCCCccEEEccCCcCcccCCccC-----cCCCCCCEEeccCCccCCcCChhhhcC
Q 005168 229 KRLGILDISNNNIRGHIPVEIG--DVLPSLYVFNISMNALDGSIPSSF-----GNMKFLQLLDLSNNQLTGEIPEHLAVG 301 (710)
Q Consensus 229 ~~L~~L~ls~n~i~~~~~~~~~--~~~~~L~~L~L~~n~i~~~~~~~f-----~~l~~L~~L~Ls~n~l~~~i~~~~~~~ 301 (710)
+.|+.++++++.+.+.....+. ...++|++|++++|.+.+.+|..+ ..++.|+.++++.+.+ .+|...+..
T Consensus 249 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~ 326 (562)
T 3a79_B 249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYS 326 (562)
T ss_dssp SSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHH
T ss_pred CcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhh
Confidence 7788888777766532111111 113488888888888887777665 5556666666666665 455332211
Q ss_pred ---CCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccC
Q 005168 302 ---CVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSL 378 (710)
Q Consensus 302 ---l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~ 378 (710)
..+|++|++++|.+.. . .....+++|++|++++|.+++..|..+.++++|++|++++|++.++.
T Consensus 327 ~~~~~~L~~L~l~~n~~~~-----------~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 393 (562)
T 3a79_B 327 VFAEMNIKMLSISDTPFIH-----------M--VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393 (562)
T ss_dssp HHHTCCCSEEEEESSCCCC-----------C--CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT
T ss_pred hhccCcceEEEccCCCccc-----------c--cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc
Confidence 2567888777776542 1 11256777777777777777777777777777777777777766321
Q ss_pred CCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccc-cCCcccCCCCCCCEEEccCCc
Q 005168 379 PSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEG-EVPVQLCELNQLQLLDLSNNS 457 (710)
Q Consensus 379 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~ 457 (710)
..|..+..+++|++|++++|++++ ..+..+..+++|++|++++|.
T Consensus 394 ----------------------------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 394 ----------------------------------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp ----------------------------------HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred ----------------------------------cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 223456778999999999999997 444568899999999999999
Q ss_pred ccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccC
Q 005168 458 LHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLT 537 (710)
Q Consensus 458 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 537 (710)
+++..|..+. ++|+.|++++|+++ .+|..+.+++
T Consensus 440 l~~~~~~~l~---------------------------------------------~~L~~L~L~~N~l~-~ip~~~~~l~ 473 (562)
T 3a79_B 440 LTGSVFRCLP---------------------------------------------PKVKVLDLHNNRIM-SIPKDVTHLQ 473 (562)
T ss_dssp CCGGGGSSCC---------------------------------------------TTCSEEECCSSCCC-CCCTTTTSSC
T ss_pred CCcchhhhhc---------------------------------------------CcCCEEECCCCcCc-ccChhhcCCC
Confidence 9876665442 37999999999999 4565555999
Q ss_pred CCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC
Q 005168 538 RIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 578 (710)
Q Consensus 538 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~ 578 (710)
+|++|+|++|+++++++..|..+++|+.|++++|++.+..+
T Consensus 474 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 99999999999998877779999999999999999987554
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.8e-38 Score=344.28 Aligned_cols=371 Identities=20% Similarity=0.234 Sum_probs=288.3
Q ss_pred EEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccC
Q 005168 184 YVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISM 263 (710)
Q Consensus 184 ~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~ 263 (710)
.++.+++.++ .+|. + .++|++|++++|.+.+..+..|..+++|++|++++|.+.+.++...+..+++|++|++++
T Consensus 14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 4555555544 3443 1 267777777777777777777778888888888888776566555555577888888888
Q ss_pred CcCcccCCccCcCCCCCCEEeccCCccCCcCC-hhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcc-ccCCCccc
Q 005168 264 NALDGSIPSSFGNMKFLQLLDLSNNQLTGEIP-EHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGW-LGNLTWLI 341 (710)
Q Consensus 264 n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~-~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~-~~~l~~L~ 341 (710)
|.+.+..|.+|.++++|++|++++|.+++.++ ...+.++++|++|++++|.+.. ..|.. +.++++|+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-----------IQPASFFLNMRRFH 157 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS-----------CCCCGGGGGCTTCC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc-----------cCcccccCCCCccc
Confidence 88877777788888888888888888774333 2345567888888777776654 44544 77788888
Q ss_pred eeeCccCccccccchhhcCC--CCCCEEECCCCcCcccCCCC---------CCCCCcceEEccCccccccccccCCCccC
Q 005168 342 HIIMPENHLEGPIPVEFCQL--YSLQILDISDNNISGSLPSC---------FHPLSIEQVHLSKNMLHRQLKRDLSYNLL 410 (710)
Q Consensus 342 ~L~L~~n~l~~~~~~~~~~l--~~L~~L~ls~n~i~~~~~~~---------~~~~~L~~L~l~~n~l~~~~~~~l~~n~~ 410 (710)
+|++++|.+.+..+..+..+ .+|+.|++++|.+.+..+.. +..++|++|++++|.+.+
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----------- 226 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE----------- 226 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-----------
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-----------
Confidence 88888888887777777665 67888888888887665443 234678888777766554
Q ss_pred cccCChhhhcC---CCccEEecCCCccccc----------CCcccC--CCCCCCEEEccCCcccccCCCCcccccccccc
Q 005168 411 NGSIPDWIGEL---SQLSHLILGHNNLEGE----------VPVQLC--ELNQLQLLDLSNNSLHGSIPPCFDNTTLYESY 475 (710)
Q Consensus 411 ~~~~~~~~~~l---~~L~~L~L~~n~l~~~----------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 475 (710)
..|..+... ++|+.|++++|...+. .+..+. ..++|+.|++++|.+.+..|..+..+
T Consensus 227 --~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l------ 298 (455)
T 3v47_A 227 --SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF------ 298 (455)
T ss_dssp --HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC------
T ss_pred --cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC------
Confidence 444444433 7889999988865432 122222 23689999999999999888888764
Q ss_pred cCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCch
Q 005168 476 NNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPS 555 (710)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 555 (710)
++|+.|++++|.+++..|..|.++++|++|+|++|.++++.+.
T Consensus 299 -------------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 299 -------------------------------------TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp -------------------------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred -------------------------------------CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence 4899999999999999999999999999999999999999999
Q ss_pred hhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168 556 TFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 626 (710)
Q Consensus 556 ~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 626 (710)
.|.++++|++|+|++|++++..|..+..+++|++|++++|+++...+..+..++.++.+++.+|++.|+||
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999999999998889999999999999999999998777777888999999999999999987
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.8e-37 Score=332.42 Aligned_cols=403 Identities=23% Similarity=0.302 Sum_probs=211.1
Q ss_pred cCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHhhcCCCCCCEEEccCCc
Q 005168 19 HLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNK 98 (710)
Q Consensus 19 ~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~ 98 (710)
+..+|++|++++|.+. .+| .+|+++++|++|++++|.++ |.+|. .++++.+|+.+++..|.
T Consensus 9 ~~~~L~~L~l~~n~l~-~iP-~~i~~L~~L~~L~l~~n~~~----------------~~~p~-~~~~l~~L~~l~l~~c~ 69 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLT-EMP-VEAENVKSKTEYYNAWSEWE----------------RNAPP-GNGEQREMAVSRLRDCL 69 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHH----------------HTSCT-TSCCCHHHHHHHHHHHH
T ss_pred ccccchhhhcccCchh-hCC-hhHhcccchhhhhccCCccc----------------ccCCc-ccccchhcchhhhhhhh
Confidence 4578889999998884 788 67888888888888865543 56676 77777777655555543
Q ss_pred CCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCCccChhccC
Q 005168 99 IDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYH 178 (710)
Q Consensus 99 l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 178 (710)
. ..+++|++++|.+++ ++. -.++|+.|++++|++.. +|..
T Consensus 70 ~---~~l~~L~l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~-----------------------------lp~~--- 109 (454)
T 1jl5_A 70 D---RQAHELELNNLGLSS-LPE----LPPHLESLVASCNSLTE-----------------------------LPEL--- 109 (454)
T ss_dssp H---HTCSEEECTTSCCSC-CCS----CCTTCSEEECCSSCCSS-----------------------------CCCC---
T ss_pred c---cCCCEEEecCCcccc-CCC----CcCCCCEEEccCCcCCc-----------------------------cccc---
Confidence 2 345555666555553 121 12456666666655442 2211
Q ss_pred CCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccE
Q 005168 179 QHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYV 258 (710)
Q Consensus 179 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~ 258 (710)
.++|++|++++|.+++ +|. ..++|++|++++|++.+ +| .+..+++|++|++++|+++ .+|.. .++|++
T Consensus 110 ~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~ 177 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEF 177 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCE
T ss_pred cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccE
Confidence 2456666666666553 221 12567777777777765 44 4777777777777777777 45543 347777
Q ss_pred EEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCC
Q 005168 259 FNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT 338 (710)
Q Consensus 259 L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~ 338 (710)
|++++|.+++ +| .|.++++|++|++++|.++ .+|.. .++|++|++++|.+.. +| .++.++
T Consensus 178 L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~~------------lp-~~~~l~ 237 (454)
T 1jl5_A 178 IAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILEE------------LP-ELQNLP 237 (454)
T ss_dssp EECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSS------------CC-CCTTCT
T ss_pred EECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCCc------------cc-ccCCCC
Confidence 7777777775 34 5777777777777777776 45542 2467777777666552 34 366777
Q ss_pred ccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhh
Q 005168 339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI 418 (710)
Q Consensus 339 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~ 418 (710)
+|++|++++|++.+. |. ..++|++|++++|.+.+++.. +.+|++|++++|.+++.. ..
T Consensus 238 ~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~-----------~~---- 295 (454)
T 1jl5_A 238 FLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLS-----------EL---- 295 (454)
T ss_dssp TCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEES-----------CC----
T ss_pred CCCEEECCCCcCCcc-cc---cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCccc-----------Cc----
Confidence 777777777777653 22 236777777777777764322 356777766666655310 01
Q ss_pred hcCCCccEEecCCCcccccCCcccCCC-CCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcc
Q 005168 419 GELSQLSHLILGHNNLEGEVPVQLCEL-NQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGD 497 (710)
Q Consensus 419 ~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (710)
.++|++|++++|++++.. .+ ++|++|++++|++++ +|..
T Consensus 296 --~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~-------------------------------- 335 (454)
T 1jl5_A 296 --PPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL-------------------------------- 335 (454)
T ss_dssp --CTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC--------------------------------
T ss_pred --CCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc--------------------------------
Confidence 146777777777776421 22 467777777777764 3321
Q ss_pred eeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCC--CCchhhcCCccCCEEeCcCCcCcc
Q 005168 498 FTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTG--LIPSTFSNLKHIESLDLSYNKLNG 575 (710)
Q Consensus 498 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~i~~ 575 (710)
+++|+.|++++|++++ +|. .+++|++|++++|++++ ..|..+..+ +.|.+.+
T Consensus 336 --------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~ 389 (454)
T 1jl5_A 336 --------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLA 389 (454)
T ss_dssp --------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC---
T ss_pred --------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhccccc
Confidence 2367777777777774 333 35677777777777776 344444332 2233333
Q ss_pred cCCcccccCCCCCEEeccCCcccc--ccCC
Q 005168 576 KIPHQLVELKTLEVFSVAYNNLSG--EILE 603 (710)
Q Consensus 576 ~~~~~l~~l~~L~~L~l~~N~l~~--~~~~ 603 (710)
.+|.. +++|+.|++++|++++ .+|.
T Consensus 390 ~i~~~---~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 390 EVPEL---PQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp ------------------------------
T ss_pred ccccc---cCcCCEEECCCCcCCccccchh
Confidence 34332 3566666666666665 4444
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=333.66 Aligned_cols=324 Identities=19% Similarity=0.160 Sum_probs=209.6
Q ss_pred CEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEcc
Q 005168 183 EYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNIS 262 (710)
Q Consensus 183 ~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~ 262 (710)
+.++.+++.++ .+|..+ .++++.|++++|++.+..+..|..+++|++|++++|.+++..|..+. .+++|++|+|+
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh-CCccCCEEECC
Confidence 46677666665 455433 35777888888888777777777788888888888877743344443 37778888888
Q ss_pred CCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccce
Q 005168 263 MNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIH 342 (710)
Q Consensus 263 ~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~ 342 (710)
+|.++.+.+..|.++++|++|++++|.+. .++...|.++++|++|++++|.+.. ..+..|.++++|++
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVY-----------ISHRAFSGLNSLEQ 156 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCE-----------ECTTSSTTCTTCCE
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCccce-----------eChhhccCCCCCCE
Confidence 88777666667777788888888888777 5555556677777777777666553 45666777777888
Q ss_pred eeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCC
Q 005168 343 IIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELS 422 (710)
Q Consensus 343 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~ 422 (710)
|++++|.+++..+..|..+++|+.|++++|.+.+..+..+. .++
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~------------------------------------~l~ 200 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK------------------------------------RLY 200 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSC------------------------------------SCT
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcc------------------------------------cCc
Confidence 88877777776667777777777777777777765554443 344
Q ss_pred CccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeecc
Q 005168 423 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKN 502 (710)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (710)
+|++|++++|...+..+.......+|+.|++++|.+++..+..+..
T Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---------------------------------- 246 (477)
T 2id5_A 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH---------------------------------- 246 (477)
T ss_dssp TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT----------------------------------
T ss_pred ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC----------------------------------
Confidence 4455555444443333333333345555555555554332222322
Q ss_pred ccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccc
Q 005168 503 IAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV 582 (710)
Q Consensus 503 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~ 582 (710)
+++|+.|+|++|.+++..+..|.++++|++|+|++|+++++.+..|.++++|+.|+|++|++++..+..|.
T Consensus 247 ---------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 317 (477)
T 2id5_A 247 ---------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317 (477)
T ss_dssp ---------CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS
T ss_pred ---------ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC
Confidence 22555555555555555555566666666666666666666666666666677777777766665555666
Q ss_pred cCCCCCEEeccCCccccccC
Q 005168 583 ELKTLEVFSVAYNNLSGEIL 602 (710)
Q Consensus 583 ~l~~L~~L~l~~N~l~~~~~ 602 (710)
.+++|+.|++++|+|.|+|+
T Consensus 318 ~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 318 SVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CGGGCCEEECCSSCEECSGG
T ss_pred CCcccCEEEccCCCccCccc
Confidence 66667777777777776664
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.5e-36 Score=326.08 Aligned_cols=337 Identities=21% Similarity=0.254 Sum_probs=240.3
Q ss_pred EEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccC
Q 005168 233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN 312 (710)
Q Consensus 233 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~ 312 (710)
.++.++++++ .+|..+. ++++.|++++|.++++.+..|.++++|++|+|++|.++ .++...|.++++|++|++++
T Consensus 15 ~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp EEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCC
Confidence 4444444444 4444332 35555555555555555555555555555555555555 34334444555555555555
Q ss_pred CCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEE
Q 005168 313 NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVH 391 (710)
Q Consensus 313 n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~ 391 (710)
|.+.. ..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+. +++|++|+
T Consensus 90 n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 90 NRLKL-----------IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp SCCCS-----------CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred CcCCc-----------cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 44432 2333455555555555555555555555555566666666666666555555554 55666665
Q ss_pred ccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccc
Q 005168 392 LSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTL 471 (710)
Q Consensus 392 l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 471 (710)
+++|.+++ ..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.+|.....
T Consensus 159 l~~n~l~~-------------~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--- 222 (477)
T 2id5_A 159 LEKCNLTS-------------IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--- 222 (477)
T ss_dssp EESCCCSS-------------CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT---
T ss_pred CCCCcCcc-------------cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc---
Confidence 55554432 34456888999999999999999888889999999999999999877666544322
Q ss_pred cccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCC
Q 005168 472 YESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTG 551 (710)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 551 (710)
..+|+.|++++|.+++..+..|..+++|++|+|++|.+++
T Consensus 223 ----------------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 223 ----------------------------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262 (477)
T ss_dssp ----------------------------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE
T ss_pred ----------------------------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc
Confidence 2379999999999997766789999999999999999999
Q ss_pred CCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCC----
Q 005168 552 LIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL---- 627 (710)
Q Consensus 552 ~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~---- 627 (710)
+.+..|.++++|++|+|++|++.+..|..|..+++|+.|++++|.++...+..+..+..++.+.+.+||+.|+|+.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~ 342 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF 342 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHH
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHH
Confidence 9999999999999999999999999999999999999999999999987777778888999999999999999852
Q ss_pred ------------CCCCCCCCCCCccC
Q 005168 628 ------------PICRSPATMSEASI 641 (710)
Q Consensus 628 ------------~~c~~~~~~~~~~~ 641 (710)
..|..|...++..+
T Consensus 343 ~~~~~~~~~~~~~~C~~p~~~~g~~l 368 (477)
T 2id5_A 343 RRRWRLNFNRQQPTCATPEFVQGKEF 368 (477)
T ss_dssp TTTTSSCCTTCCCBEEESGGGTTCBG
T ss_pred hhhhccccCccCceeCCchHHcCCch
Confidence 15777766665544
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-35 Score=319.94 Aligned_cols=397 Identities=23% Similarity=0.293 Sum_probs=227.4
Q ss_pred cccEEecCCCcceeecCHHhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccc
Q 005168 63 VSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNA 142 (710)
Q Consensus 63 ~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~ 142 (710)
+|++|++++|.+ +.+|. .++++++|++|++++|.+.+ .++ ..+..+.+|+.++++.|..
T Consensus 12 ~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~----------------~~p-~~~~~l~~L~~l~l~~c~~-- 70 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWER----------------NAP-PGNGEQREMAVSRLRDCLD-- 70 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHH----------------TSC-TTSCCCHHHHHHHHHHHHH--
T ss_pred cchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccc----------------cCC-cccccchhcchhhhhhhhc--
Confidence 344444445555 48888 78888888888888876553 222 2345555555555544431
Q ss_pred cccccccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCc
Q 005168 143 EITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFW 222 (710)
Q Consensus 143 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 222 (710)
.++++|++ +++.+++ +|.. .++|++|++++|.+++ +|. ..++|++|++++|++.+...
T Consensus 71 ------------~~l~~L~l-~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~ 128 (454)
T 1jl5_A 71 ------------RQAHELEL-NNLGLSS-LPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSD 128 (454)
T ss_dssp ------------HTCSEEEC-TTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCS
T ss_pred ------------cCCCEEEe-cCCcccc-CCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccC
Confidence 15666777 5555443 2331 2678888888888876 553 24788888888888775322
Q ss_pred cCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCC
Q 005168 223 LPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGC 302 (710)
Q Consensus 223 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l 302 (710)
. .++|++|++++|.++ .+| .+ ..+++|++|++++|++++ +|.. .++|++|++++|.++ .+|. +.++
T Consensus 129 ~----~~~L~~L~L~~n~l~-~lp-~~-~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~-~l~~--~~~l 194 (454)
T 1jl5_A 129 L----PPLLEYLGVSNNQLE-KLP-EL-QNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE-ELPE--LQNL 194 (454)
T ss_dssp C----CTTCCEEECCSSCCS-SCC-CC-TTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC--CTTC
T ss_pred C----CCCCCEEECcCCCCC-CCc-cc-CCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC-cCcc--ccCC
Confidence 1 267888888888888 577 33 347788888888888875 4433 357888888888887 5663 5578
Q ss_pred CCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCC
Q 005168 303 VNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCF 382 (710)
Q Consensus 303 ~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~ 382 (710)
++|++|++++|.+.. +|.. .++|++|++++|.+. .+| .+..+++|++|++++|++.++++
T Consensus 195 ~~L~~L~l~~N~l~~------------l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~--- 254 (454)
T 1jl5_A 195 PFLTAIYADNNSLKK------------LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD--- 254 (454)
T ss_dssp TTCCEEECCSSCCSS------------CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS---
T ss_pred CCCCEEECCCCcCCc------------CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc---
Confidence 888888887777653 2221 247888888888877 344 37788888888888888876443
Q ss_pred CCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccC
Q 005168 383 HPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSI 462 (710)
Q Consensus 383 ~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 462 (710)
.+.+|+.|++++|.+++ +|.. .++|++|++++|++++.. . -.++|+.|++++|.+++..
T Consensus 255 ~~~~L~~L~l~~N~l~~--------------l~~~---~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i~ 313 (454)
T 1jl5_A 255 LPPSLEALNVRDNYLTD--------------LPEL---PQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSLC 313 (454)
T ss_dssp CCTTCCEEECCSSCCSC--------------CCCC---CTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEEC
T ss_pred cccccCEEECCCCcccc--------------cCcc---cCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCccc
Confidence 23677777777666553 2221 257777888877777522 1 1257777788777776421
Q ss_pred CCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEE
Q 005168 463 PPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTL 542 (710)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 542 (710)
. .+++|+.|++++|++++ +|.. +++|++|
T Consensus 314 -~----------------------------------------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L 342 (454)
T 1jl5_A 314 -D----------------------------------------------LPPSLEELNVSNNKLIE-LPAL---PPRLERL 342 (454)
T ss_dssp -C----------------------------------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred -C----------------------------------------------CcCcCCEEECCCCcccc-cccc---CCcCCEE
Confidence 1 02367778888887775 3432 4677888
Q ss_pred eCCCccCCCCCchhhcCCccCCEEeCcCCcCcc--cCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCC
Q 005168 543 NLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG--KIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNT 620 (710)
Q Consensus 543 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~ 620 (710)
++++|.++++++ .+++|++|++++|++++ .+|..+. +++.|.+.+.+|.. +..++.+++.+|+
T Consensus 343 ~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~--------~L~~n~~~~~i~~~---~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 343 IASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVE--------DLRMNSHLAEVPEL---PQNLKQLHVETNP 407 (454)
T ss_dssp ECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCC--------EEECCC------------------------
T ss_pred ECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHHH--------hhhhcccccccccc---cCcCCEEECCCCc
Confidence 888887776543 35777888888887776 4444332 23345566655542 3567777888888
Q ss_pred CCC
Q 005168 621 FLC 623 (710)
Q Consensus 621 ~~c 623 (710)
..+
T Consensus 408 l~~ 410 (454)
T 1jl5_A 408 LRE 410 (454)
T ss_dssp ---
T ss_pred CCc
Confidence 765
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.2e-35 Score=310.31 Aligned_cols=335 Identities=24% Similarity=0.256 Sum_probs=208.9
Q ss_pred CCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccE
Q 005168 179 QHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYV 258 (710)
Q Consensus 179 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~ 258 (710)
+++++.++++++.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .++...+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 456666666666655 344444456666666666666666555555666666666666666665 333333333555566
Q ss_pred EEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCC
Q 005168 259 FNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT 338 (710)
Q Consensus 259 L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~ 338 (710)
|++++|.+..+.+..|.++++|++|++++|.+. .++...+.++++|++|++++|.+.. . .+..++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-----------~---~~~~l~ 186 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH-----------V---DLSLIP 186 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSB-----------C---CGGGCT
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCc-----------c---cccccc
Confidence 666555555444444555555555555555555 4444444455555555555554432 1 133344
Q ss_pred ccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhh
Q 005168 339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI 418 (710)
Q Consensus 339 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~ 418 (710)
+|+.|++++|.+.+. ...++|++|++++|.+......
T Consensus 187 ~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~-------------------------------------- 223 (390)
T 3o6n_A 187 SLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP-------------------------------------- 223 (390)
T ss_dssp TCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEECC--------------------------------------
T ss_pred ccceeeccccccccc-----CCCCcceEEECCCCeeeecccc--------------------------------------
Confidence 455555554444321 1223444444444444332111
Q ss_pred hcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcce
Q 005168 419 GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDF 498 (710)
Q Consensus 419 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (710)
..++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..|..
T Consensus 224 -~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------ 270 (390)
T 3o6n_A 224 -VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK------------------------------ 270 (390)
T ss_dssp -CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT------------------------------
T ss_pred -ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc------------------------------
Confidence 135677777777777643 45677778888888888777766666655
Q ss_pred eeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC
Q 005168 499 TTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 578 (710)
Q Consensus 499 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~ 578 (710)
+++|+.|++++|++++ .+..+..+++|++|+|++|+++++ |..+..+++|++|++++|+++.. +
T Consensus 271 -------------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~-~ 334 (390)
T 3o6n_A 271 -------------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K 334 (390)
T ss_dssp -------------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C
T ss_pred -------------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCcccee-C
Confidence 3377888888888775 355567789999999999999965 55678899999999999999854 3
Q ss_pred cccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168 579 HQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 626 (710)
Q Consensus 579 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 626 (710)
+..+++|+.|++++|++.|.+.. ..+..+....+.+++..|.++
T Consensus 335 --~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 335 --LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp --CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred --chhhccCCEEEcCCCCccchhHH--HHHHHHHhhcccccCceeccc
Confidence 67789999999999999998754 344556666667777777643
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-33 Score=306.88 Aligned_cols=327 Identities=25% Similarity=0.346 Sum_probs=229.0
Q ss_pred ccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCC
Q 005168 176 LYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPS 255 (710)
Q Consensus 176 l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~ 255 (710)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.++ .++. +..+++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~ 135 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-DIDP--LKNLTN 135 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred hhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCC-CChH--HcCCCC
Confidence 4456667777777766664333 3566777777777776665444 666777777777777766 4443 233667
Q ss_pred ccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcccc
Q 005168 256 LYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG 335 (710)
Q Consensus 256 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~ 335 (710)
|++|++++|.+.+. ..+.++++|+.|+++ |.+. .++. +.++++|++|++++|.+.. ...+.
T Consensus 136 L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~-~~~~--~~~l~~L~~L~l~~n~l~~-------------~~~l~ 196 (466)
T 1o6v_A 136 LNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVT-DLKP--LANLTTLERLDISSNKVSD-------------ISVLA 196 (466)
T ss_dssp CSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCC-CCGG--GTTCTTCCEEECCSSCCCC-------------CGGGG
T ss_pred CCEEECCCCccCCC--hhhccCCcccEeecC-Cccc-Cchh--hccCCCCCEEECcCCcCCC-------------Chhhc
Confidence 77777777766643 236667777777775 3443 2332 4466777777776666543 12366
Q ss_pred CCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCC
Q 005168 336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP 415 (710)
Q Consensus 336 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~ 415 (710)
.+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.. ....+++|+.|++++|.+.+ ..+
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~-------------~~~ 260 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISN-------------LAP 260 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-------------CGG
T ss_pred cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCcccc-------------chh
Confidence 67777777777777765544 566777777777777766542 22226677777666665543 212
Q ss_pred hhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCC
Q 005168 416 DWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQ 495 (710)
Q Consensus 416 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (710)
+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..
T Consensus 261 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~--------------------------- 307 (466)
T 1o6v_A 261 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN--------------------------- 307 (466)
T ss_dssp --GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG---------------------------
T ss_pred --hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC---------------------------
Confidence 6678889999999999886544 7888999999999998875443 322
Q ss_pred cceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcc
Q 005168 496 GDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 575 (710)
Q Consensus 496 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 575 (710)
+++|+.|++++|++++..| +..+++|++|++++|+++++ ..+..+++|+.|++++|++++
T Consensus 308 ----------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 308 ----------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp ----------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred ----------------CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 5589999999999987655 78899999999999999987 578889999999999999997
Q ss_pred cCCcccccCCCCCEEeccCCccccc
Q 005168 576 KIPHQLVELKTLEVFSVAYNNLSGE 600 (710)
Q Consensus 576 ~~~~~l~~l~~L~~L~l~~N~l~~~ 600 (710)
..| +..+++|+.|++++|++++.
T Consensus 368 ~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 368 LTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CGG--GTTCTTCCEEECCCEEEECC
T ss_pred cch--hhcCCCCCEEeccCCcccCC
Confidence 776 78899999999999999873
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-33 Score=316.90 Aligned_cols=333 Identities=24% Similarity=0.264 Sum_probs=204.7
Q ss_pred CCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEE
Q 005168 180 HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVF 259 (710)
Q Consensus 180 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L 259 (710)
.+++.++++++.+.. +|..++..+++|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|...+..+++|++|
T Consensus 51 ~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 51 NNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 128 (597)
T ss_dssp CCCSEEEESSCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCCCCC-cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEE
Confidence 455666666555542 33333355556666666655555555555555555555555555555 3333333335555555
Q ss_pred EccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCc
Q 005168 260 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW 339 (710)
Q Consensus 260 ~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~ 339 (710)
+|++|.+.++.+..|.++++|++|++++|.++ .++...+.++++|++|++++|.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~------------------------- 182 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR------------------------- 182 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSC-------------------------
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCC-------------------------
Confidence 55555555444444455555555555555554 3343334445555555554444
Q ss_pred cceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhh
Q 005168 340 LIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIG 419 (710)
Q Consensus 340 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~ 419 (710)
+++.. +..+++|+.|++++|.+.+.. .+.+|+.|++++|.+... +..+
T Consensus 183 ----------l~~~~---~~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~--------------~~~~- 230 (597)
T 3oja_B 183 ----------LTHVD---LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV--------------RGPV- 230 (597)
T ss_dssp ----------CSBCC---GGGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEE--------------ECSC-
T ss_pred ----------CCCcC---hhhhhhhhhhhcccCcccccc----CCchhheeeccCCccccc--------------cccc-
Confidence 44321 233344445555554444321 123455554444444321 1111
Q ss_pred cCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCccee
Q 005168 420 ELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFT 499 (710)
Q Consensus 420 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (710)
.++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..|..+
T Consensus 231 -~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------------------------ 277 (597)
T 3oja_B 231 -NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM------------------------------ 277 (597)
T ss_dssp -CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC------------------------------
T ss_pred -CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc------------------------------
Confidence 2467778888887774 3567777888888888888877777666553
Q ss_pred eccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCc
Q 005168 500 TKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPH 579 (710)
Q Consensus 500 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~ 579 (710)
++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++++ |..+..+++|+.|+|++|++.+. |
T Consensus 278 -------------~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~-~- 340 (597)
T 3oja_B 278 -------------QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K- 340 (597)
T ss_dssp -------------SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C-
T ss_pred -------------cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCc-C-
Confidence 378888888888875 455667789999999999999965 56678899999999999999854 3
Q ss_pred ccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCC
Q 005168 580 QLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGL 625 (710)
Q Consensus 580 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~ 625 (710)
+..+++|+.|++++|+|.|.+.. ..+..+....+.+++..|+.
T Consensus 341 -~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 341 -LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp -CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCT
T ss_pred -hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccccccCCc
Confidence 66788999999999999998754 34556666667788877765
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6e-33 Score=299.83 Aligned_cols=269 Identities=22% Similarity=0.204 Sum_probs=173.2
Q ss_pred CCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHhhcCCC
Q 005168 8 SFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFN 87 (710)
Q Consensus 8 ~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~~~~l~ 87 (710)
.+....+.++.++++|++|++++|.++ .++ .|..+++|++|++++|+++ .++ +.+++
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~-----------------~~~---~~~l~ 85 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNIT-----------------TLD---LSQNT 85 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCS-----------------CCC---CTTCT
T ss_pred CcCcccccChhHcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCC-----------------eEc---cccCC
Confidence 344555667888999999999999988 455 6889999999999988876 232 55666
Q ss_pred CCCEEEccCCcCCCCCCCcEEEccccccccccCcccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCC
Q 005168 88 NLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYG 167 (710)
Q Consensus 88 ~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 167 (710)
+|++|++++|+++++ ++.++++|+.|++++|++.... +...++|++|++ +++.
T Consensus 86 ~L~~L~Ls~N~l~~~--------------------~~~~l~~L~~L~L~~N~l~~l~------~~~l~~L~~L~l-~~N~ 138 (457)
T 3bz5_A 86 NLTYLACDSNKLTNL--------------------DVTPLTKLTYLNCDTNKLTKLD------VSQNPLLTYLNC-ARNT 138 (457)
T ss_dssp TCSEEECCSSCCSCC--------------------CCTTCTTCCEEECCSSCCSCCC------CTTCTTCCEEEC-TTSC
T ss_pred CCCEEECcCCCCcee--------------------ecCCCCcCCEEECCCCcCCeec------CCCCCcCCEEEC-CCCc
Confidence 777777777766542 1334445555555555443321 223334555555 4443
Q ss_pred CCCccChhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCCh
Q 005168 168 DGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPV 247 (710)
Q Consensus 168 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~ 247 (710)
+.+. + +..+++|++|++++|...+.++ +..+++|+.|++++|++++. + +..+++|++|++++|.++ .++
T Consensus 139 l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~-~~~- 207 (457)
T 3bz5_A 139 LTEI-D--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNIT-KLD- 207 (457)
T ss_dssp CSCC-C--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCS-CCC-
T ss_pred ccee-c--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCC-eec-
Confidence 3331 1 4566778888888775544443 25678888888888888773 2 777888888888888887 443
Q ss_pred hhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCc
Q 005168 248 EIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLS 327 (710)
Q Consensus 248 ~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~ 327 (710)
+. .+++|++|++++|++++ +| +..+++|+.|++++|+++ .+|. ..+++|+.|++++|.+.. +++++|.+.
T Consensus 208 -l~-~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~-~~~~---~~l~~L~~L~l~~n~L~~-L~l~~n~~~ 277 (457)
T 3bz5_A 208 -LN-QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT-ELDV---STLSKLTTLHCIQTDLLE-IDLTHNTQL 277 (457)
T ss_dssp -CT-TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-CCCC---TTCTTCCEEECTTCCCSC-CCCTTCTTC
T ss_pred -cc-cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC-CcCH---HHCCCCCEEeccCCCCCE-EECCCCccC
Confidence 33 37788888888888886 34 778888888888888888 4552 257788888877765543 444444433
Q ss_pred cCcCccccCCCccceeeCccCc
Q 005168 328 GNIPGWLGNLTWLIHIIMPENH 349 (710)
Q Consensus 328 ~~~~~~~~~l~~L~~L~L~~n~ 349 (710)
+.+| ++.+++|+.|++++|.
T Consensus 278 ~~~~--~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 278 IYFQ--AEGCRKIKELDVTHNT 297 (457)
T ss_dssp CEEE--CTTCTTCCCCCCTTCT
T ss_pred Cccc--ccccccCCEEECCCCc
Confidence 3332 2333444444444333
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-32 Score=299.55 Aligned_cols=346 Identities=23% Similarity=0.315 Sum_probs=291.9
Q ss_pred CCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccE
Q 005168 179 QHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYV 258 (710)
Q Consensus 179 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~ 258 (710)
+++++.|+++++.+.. +|. +..+++|++|++++|.+.+..+ +..+++|++|++++|.++ .++. +..+++|++
T Consensus 45 l~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCE
T ss_pred hccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCE
Confidence 4689999999998874 554 3689999999999999988655 899999999999999998 5554 445899999
Q ss_pred EEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCC
Q 005168 259 FNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT 338 (710)
Q Consensus 259 L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~ 338 (710)
|++++|.+.+..+ +.++++|++|++++|.+. .++. +.++++|++|++++ .+.. ...+..++
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~-~~~~-------------~~~~~~l~ 177 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFGN-QVTD-------------LKPLANLT 177 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEEE-SCCC-------------CGGGTTCT
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecCC-cccC-------------chhhccCC
Confidence 9999999997643 899999999999999998 6654 56899999999863 3321 23488999
Q ss_pred ccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhh
Q 005168 339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI 418 (710)
Q Consensus 339 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~ 418 (710)
+|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ ...+++|++|++++|.+++ + ..+
T Consensus 178 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~--------------~-~~l 239 (466)
T 1o6v_A 178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--------------I-GTL 239 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC--------------C-GGG
T ss_pred CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc--------------c-hhh
Confidence 999999999998865 348899999999999999987765 2238899999998887763 1 357
Q ss_pred hcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcce
Q 005168 419 GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDF 498 (710)
Q Consensus 419 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (710)
..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~------------------------------ 285 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG------------------------------ 285 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT------------------------------
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC------------------------------
Confidence 789999999999999986654 8899999999999999986544 333
Q ss_pred eeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC
Q 005168 499 TTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 578 (710)
Q Consensus 499 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~ 578 (710)
+++|+.|++++|++++..+ +..+++|++|+|++|+++++.+ +..+++|++|++++|++++.
T Consensus 286 -------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-- 346 (466)
T 1o6v_A 286 -------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 346 (466)
T ss_dssp -------------CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred -------------CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--
Confidence 4589999999999997654 8899999999999999998866 78999999999999999965
Q ss_pred cccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCC
Q 005168 579 HQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCG 624 (710)
Q Consensus 579 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~ 624 (710)
..+..+++|+.|++++|++++..| +..+..++.+.+.+|++...
T Consensus 347 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 468899999999999999998877 57888888888999887763
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.8e-33 Score=300.00 Aligned_cols=357 Identities=20% Similarity=0.221 Sum_probs=198.8
Q ss_pred hhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHhhcCCCCCCEEEccCCcCCCCCCCcEEEccccccccccC
Q 005168 41 EFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPIS 120 (710)
Q Consensus 41 ~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L~~~~l~~~~~ 120 (710)
.++.+++|++|++++|.++ .+| .+..+++|++|++++|+++++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~-----------------~~~--~l~~l~~L~~L~Ls~n~l~~~------------------ 79 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSIT-----------------DMT--GIEKLTGLTKLICTSNNITTL------------------ 79 (457)
T ss_dssp EHHHHTTCCEEECCSSCCC-----------------CCT--TGGGCTTCSEEECCSSCCSCC------------------
T ss_pred ChhHcCCCCEEEccCCCcc-----------------cCh--hhcccCCCCEEEccCCcCCeE------------------
Confidence 4555666666666665554 333 466677777777777666542
Q ss_pred cccccCCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCCCccChhccCCCCCCEEEccCCcCcccCChhH
Q 005168 121 LEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWL 200 (710)
Q Consensus 121 ~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~ 200 (710)
++..+++|++|++++|++... + +..+++|++|++++|.+++ +|
T Consensus 80 --~~~~l~~L~~L~Ls~N~l~~~-----------------------------~--~~~l~~L~~L~L~~N~l~~-l~--- 122 (457)
T 3bz5_A 80 --DLSQNTNLTYLACDSNKLTNL-----------------------------D--VTPLTKLTYLNCDTNKLTK-LD--- 122 (457)
T ss_dssp --CCTTCTTCSEEECCSSCCSCC-----------------------------C--CTTCTTCCEEECCSSCCSC-CC---
T ss_pred --ccccCCCCCEEECcCCCCcee-----------------------------e--cCCCCcCCEEECCCCcCCe-ec---
Confidence 144566666777766655321 1 2344555555555555543 22
Q ss_pred hhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCC
Q 005168 201 LENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFL 280 (710)
Q Consensus 201 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L 280 (710)
+..+++|++|++++|++++. +++.+++|++|++++|...+.++ + ..+++|++|++++|+++++ | +..+++|
T Consensus 123 ~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~-~~l~~L~~L~ls~n~l~~l-~--l~~l~~L 193 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--V-TPQTQLTTLDCSFNKITEL-D--VSQNKLL 193 (457)
T ss_dssp CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--C-TTCTTCCEEECCSSCCCCC-C--CTTCTTC
T ss_pred CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--c-ccCCcCCEEECCCCcccee-c--cccCCCC
Confidence 24455555555555555542 24455555555555553222332 1 1244555555555555542 2 4445555
Q ss_pred CEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcC
Q 005168 281 QLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQ 360 (710)
Q Consensus 281 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 360 (710)
+.|++++|.++ .++ +..+++|++|++++|.+.. +| +..+++|++|++++|.+++.. +..
T Consensus 194 ~~L~l~~N~l~-~~~---l~~l~~L~~L~Ls~N~l~~------------ip--~~~l~~L~~L~l~~N~l~~~~---~~~ 252 (457)
T 3bz5_A 194 NRLNCDTNNIT-KLD---LNQNIQLTFLDCSSNKLTE------------ID--VTPLTQLTYFDCSVNPLTELD---VST 252 (457)
T ss_dssp CEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSC------------CC--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred CEEECcCCcCC-eec---cccCCCCCEEECcCCcccc------------cC--ccccCCCCEEEeeCCcCCCcC---HHH
Confidence 55555555554 222 2344455555544444332 12 344444555555555444432 223
Q ss_pred CCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCc
Q 005168 361 LYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPV 440 (710)
Q Consensus 361 l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 440 (710)
+++|+.|++++|++ +.+ ++++|.+.+.+| ++.+++|+.|++++|...+.+|.
T Consensus 253 l~~L~~L~l~~n~L-------------~~L-------------~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 253 LSKLTTLHCIQTDL-------------LEI-------------DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp CTTCCEEECTTCCC-------------SCC-------------CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CCCCCEEeccCCCC-------------CEE-------------ECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence 44444454444322 222 233333333333 34456666666666665544442
Q ss_pred ccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEEC
Q 005168 441 QLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYL 520 (710)
Q Consensus 441 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 520 (710)
..++|+.|++++| ++|+.|++
T Consensus 305 ---~~~~L~~L~l~~~--------------------------------------------------------~~L~~L~L 325 (457)
T 3bz5_A 305 ---QAAGITELDLSQN--------------------------------------------------------PKLVYLYL 325 (457)
T ss_dssp ---TTCCCSCCCCTTC--------------------------------------------------------TTCCEEEC
T ss_pred ---CCCcceEechhhc--------------------------------------------------------ccCCEEEC
Confidence 2344555555443 37889999
Q ss_pred cCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccc
Q 005168 521 SCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGE 600 (710)
Q Consensus 521 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~ 600 (710)
++|++++. .+..+++|+.|++++|+++++ ++|+.|++++|++.+. ..+..|+.+++++|.+++.
T Consensus 326 ~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ 389 (457)
T 3bz5_A 326 NNTELTEL---DVSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIA 389 (457)
T ss_dssp TTCCCSCC---CCTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEE
T ss_pred CCCccccc---ccccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEE
Confidence 99999974 388899999999999999864 4677778899988865 2445677889999999998
Q ss_pred cCCC
Q 005168 601 ILEW 604 (710)
Q Consensus 601 ~~~~ 604 (710)
+|..
T Consensus 390 ip~~ 393 (457)
T 3bz5_A 390 VSPD 393 (457)
T ss_dssp CCTT
T ss_pred cChh
Confidence 8764
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.5e-33 Score=295.18 Aligned_cols=313 Identities=21% Similarity=0.214 Sum_probs=245.4
Q ss_pred CCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcE
Q 005168 228 HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF 307 (710)
Q Consensus 228 ~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~ 307 (710)
++++++|++++|.++ .+|..++..+++|++|++++|.+.++.+.+|.++++|++|++++|.++ .++...+.++++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 567777888877777 677776666778888888888877777777788888888888888877 666666667788888
Q ss_pred EEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCc
Q 005168 308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSI 387 (710)
Q Consensus 308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L 387 (710)
|++++|.+.+ ..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+... ..+++|
T Consensus 122 L~L~~n~l~~-----------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~L 188 (390)
T 3o6n_A 122 LVLERNDLSS-----------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSL 188 (390)
T ss_dssp EECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG--GGCTTC
T ss_pred EECCCCccCc-----------CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc--cccccc
Confidence 8777776653 344446777888888888888877777778888888888888888776531 225678
Q ss_pred ceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcc
Q 005168 388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFD 467 (710)
Q Consensus 388 ~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 467 (710)
+.+++++|.+.+. ...++|++|++++|.+..... ...++|+.|++++|.+++. ..+.
T Consensus 189 ~~L~l~~n~l~~~------------------~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 189 FHANVSYNLLSTL------------------AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp SEEECCSSCCSEE------------------ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGG
T ss_pred ceeeccccccccc------------------CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHc
Confidence 8887777765531 224689999999999985533 2357999999999998753 2333
Q ss_pred cccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCc
Q 005168 468 NTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYN 547 (710)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 547 (710)
. +++|+.|++++|.+++..|..|..+++|++|+|++|
T Consensus 246 ~-------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 246 N-------------------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp G-------------------------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred C-------------------------------------------CCCccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence 2 558999999999999988999999999999999999
Q ss_pred cCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168 548 NLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 626 (710)
Q Consensus 548 ~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 626 (710)
+++++ +..+..+++|++|++++|++. .+|..+..+++|+.|++++|+++... +..+..++.+++.+|++.|+|.
T Consensus 283 ~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 283 RLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp CCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred cCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhH
Confidence 99976 455678999999999999999 56777888999999999999998653 4677888999999999999864
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.6e-32 Score=282.80 Aligned_cols=305 Identities=22% Similarity=0.284 Sum_probs=197.7
Q ss_pred cCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCE
Q 005168 203 NNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQL 282 (710)
Q Consensus 203 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~ 282 (710)
.+++|++|+++++.+.... .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++. ++|.++++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred hcccccEEEEeCCccccch--hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence 3455555555555554321 2455555666666655555 3333 22355666666666655542 24556666666
Q ss_pred EeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCC
Q 005168 283 LDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLY 362 (710)
Q Consensus 283 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 362 (710)
|++++|.+. .++. +..+++|++|++++|.... ....+..+++|++|++++|.+.+..+ +..++
T Consensus 115 L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~------------~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~ 177 (347)
T 4fmz_A 115 LYLNEDNIS-DISP--LANLTKMYSLNLGANHNLS------------DLSPLSNMTGLNYLTVTESKVKDVTP--IANLT 177 (347)
T ss_dssp EECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCC------------CCGGGTTCTTCCEEECCSSCCCCCGG--GGGCT
T ss_pred EECcCCccc-Cchh--hccCCceeEEECCCCCCcc------------cccchhhCCCCcEEEecCCCcCCchh--hccCC
Confidence 666666665 4443 3356666666666554332 12235566666666666666554333 55666
Q ss_pred CCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCccc
Q 005168 363 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQL 442 (710)
Q Consensus 363 ~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 442 (710)
+|++|++++|.+.+..+ ...+++|+.+++++|.+.+ ..+ +..+++|++|++++|.+++..+ +
T Consensus 178 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-------------~~~--~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITD-------------ITP--VANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp TCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-------------CGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred CCCEEEccCCccccccc-ccCCCccceeecccCCCCC-------------Cch--hhcCCcCCEEEccCCccCCCcc--h
Confidence 66666666666654433 2225566666555555442 111 5667889999999998885544 7
Q ss_pred CCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcC
Q 005168 443 CELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSC 522 (710)
Q Consensus 443 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 522 (710)
..+++|++|++++|.+++. +.+.. +++|+.|++++
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------------------l~~L~~L~l~~ 274 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKD-------------------------------------------LTKLKMLNVGS 274 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTT-------------------------------------------CTTCCEEECCS
T ss_pred hcCCCCCEEECCCCccCCC--hhHhc-------------------------------------------CCCcCEEEccC
Confidence 8888999999999887743 22222 45889999999
Q ss_pred CcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccc
Q 005168 523 NKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598 (710)
Q Consensus 523 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~ 598 (710)
|.+++. ..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..| +..+++|+.|++++|+++
T Consensus 275 n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 275 NQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 988865 468889999999999999998888999999999999999999987666 788999999999999875
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3e-32 Score=306.02 Aligned_cols=313 Identities=22% Similarity=0.226 Sum_probs=269.4
Q ss_pred CCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcE
Q 005168 228 HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF 307 (710)
Q Consensus 228 ~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~ 307 (710)
+++++.+++++|.+. .+|..++..+++|++|++++|.+.++.+..|.++++|++|+|++|.++ .+|...|.++++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 578899999999998 888888777999999999999999888889999999999999999998 788888888999999
Q ss_pred EEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCc
Q 005168 308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSI 387 (710)
Q Consensus 308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L 387 (710)
|++++|.+.. ..+..|+++++|++|++++|.+.+..|..|..+++|++|++++|.+.+.... .+++|
T Consensus 128 L~L~~n~l~~-----------l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L 194 (597)
T 3oja_B 128 LVLERNDLSS-----------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSL 194 (597)
T ss_dssp EECCSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG--GCTTC
T ss_pred EEeeCCCCCC-----------CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh--hhhhh
Confidence 9998887764 5556689999999999999999999999999999999999999999876422 26789
Q ss_pred ceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcc
Q 005168 388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFD 467 (710)
Q Consensus 388 ~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 467 (710)
+.|++++|.+.+ +...++|+.|++++|.+....+.. .++|+.|++++|.+++. ..+.
T Consensus 195 ~~L~l~~n~l~~------------------l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~ 251 (597)
T 3oja_B 195 FHANVSYNLLST------------------LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLL 251 (597)
T ss_dssp SEEECCSSCCSE------------------EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGG
T ss_pred hhhhcccCcccc------------------ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhc
Confidence 999988887764 223468999999999998554332 36899999999998852 3333
Q ss_pred cccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCc
Q 005168 468 NTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYN 547 (710)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 547 (710)
. +++|+.|+|++|.+++..|..|..+++|+.|+|++|
T Consensus 252 ~-------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 288 (597)
T 3oja_B 252 N-------------------------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288 (597)
T ss_dssp G-------------------------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS
T ss_pred c-------------------------------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC
Confidence 3 559999999999999999999999999999999999
Q ss_pred cCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168 548 NLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 626 (710)
Q Consensus 548 ~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 626 (710)
.++++ |..+..+++|+.|+|++|++. .+|..+..+++|+.|++++|++.... +..+..+..+.+.+|++.|+|.
T Consensus 289 ~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 289 RLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp CCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH
Confidence 99986 556678999999999999999 67777889999999999999998753 4567788899999999999863
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=8.2e-31 Score=274.46 Aligned_cols=307 Identities=21% Similarity=0.330 Sum_probs=259.3
Q ss_pred CccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCC
Q 005168 224 PIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV 303 (710)
Q Consensus 224 ~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~ 303 (710)
.+..+++|++|+++++.+. .+|. + ..+++|++|++++|.++++.+ |.++++|++|++++|.++ .++ .+.+++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~~-~-~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~--~~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQG-I-EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS--ALQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCT
T ss_pred cchhcccccEEEEeCCccc-cchh-h-hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch--HHcCCC
Confidence 3557899999999999998 6764 3 348999999999999996544 899999999999999998 665 366899
Q ss_pred CCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC
Q 005168 304 NLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH 383 (710)
Q Consensus 304 ~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~ 383 (710)
+|++|++++|.+.. .+. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ ...
T Consensus 111 ~L~~L~l~~n~i~~------------~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~ 175 (347)
T 4fmz_A 111 NLRELYLNEDNISD------------ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IAN 175 (347)
T ss_dssp TCSEEECTTSCCCC------------CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGG
T ss_pred cCCEEECcCCcccC------------chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hcc
Confidence 99999999998764 233 8899999999999996664444 48999999999999999987655 233
Q ss_pred CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCC
Q 005168 384 PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP 463 (710)
Q Consensus 384 ~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 463 (710)
+++|++|++++|.+.+ ++. +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+
T Consensus 176 l~~L~~L~l~~n~l~~--------------~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIED--------------ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp CTTCSEEECTTSCCCC--------------CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCEEEccCCcccc--------------ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc
Confidence 8899999888887663 222 7778999999999999986544 8889999999999999885443
Q ss_pred CCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEe
Q 005168 464 PCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLN 543 (710)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 543 (710)
+.. +++|+.|++++|.+++. ..+..+++|++|+
T Consensus 239 --~~~-------------------------------------------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 239 --LAN-------------------------------------------LSQLTWLEIGTNQISDI--NAVKDLTKLKMLN 271 (347)
T ss_dssp --GTT-------------------------------------------CTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred --hhc-------------------------------------------CCCCCEEECCCCccCCC--hhHhcCCCcCEEE
Confidence 333 55899999999999864 5689999999999
Q ss_pred CCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCC
Q 005168 544 LSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTF 621 (710)
Q Consensus 544 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~ 621 (710)
+++|.++++ ..+..+++|++|++++|++.+..++.+..+++|+.|++++|++++..| +..++.++.+++.+|+.
T Consensus 272 l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 272 VGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred ccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 999999987 568999999999999999999999999999999999999999998777 57888888888888864
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=6e-31 Score=273.43 Aligned_cols=288 Identities=23% Similarity=0.305 Sum_probs=195.4
Q ss_pred CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEE
Q 005168 230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLM 309 (710)
Q Consensus 230 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~ 309 (710)
.++.++++++.++ .+|..++ ++++.|++++|.+.++.+.+|.++++|++|++++|.++ .++...+.++++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence 4666666666666 6665543 46677777777776666666777777777777777766 45445555667777777
Q ss_pred ccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcc--cCCCCCCCCCc
Q 005168 310 LSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISG--SLPSCFHPLSI 387 (710)
Q Consensus 310 Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~--~~~~~~~~~~L 387 (710)
+++|.+.+ +|..+. ++|++|++++|.+....+..|.++++|++|++++|.+.. ..+..+...+|
T Consensus 109 L~~n~l~~------------l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L 174 (332)
T 2ft3_A 109 ISKNHLVE------------IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL 174 (332)
T ss_dssp CCSSCCCS------------CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCC
T ss_pred CCCCcCCc------------cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCcc
Confidence 66666553 233222 567777777777776666667777777777777777753 44555543366
Q ss_pred ceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcc
Q 005168 388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFD 467 (710)
Q Consensus 388 ~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 467 (710)
+.|++++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.
T Consensus 175 ~~L~l~~n~l~~--------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 175 NYLRISEAKLTG--------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp SCCBCCSSBCSS--------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred CEEECcCCCCCc--------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 666666655542 222222 5788888888888877777788888888888888888776666665
Q ss_pred cccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCc
Q 005168 468 NTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYN 547 (710)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 547 (710)
. +++|+.|++++|+++ .+|..+..+++|++|++++|
T Consensus 239 ~-------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 239 F-------------------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp G-------------------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSS
T ss_pred C-------------------------------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCC
Confidence 4 347888888888887 56667888888888888888
Q ss_pred cCCCCCchhhcCC------ccCCEEeCcCCcCc--ccCCcccccCCCCCEEeccCCc
Q 005168 548 NLTGLIPSTFSNL------KHIESLDLSYNKLN--GKIPHQLVELKTLEVFSVAYNN 596 (710)
Q Consensus 548 ~l~~~~~~~~~~l------~~L~~L~Ls~N~i~--~~~~~~l~~l~~L~~L~l~~N~ 596 (710)
.++++.+..|... ++|+.|++++|++. ...|..+..+++|+.+++++|.
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 8888877777653 56888888888876 5677778888888888888774
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.6e-30 Score=269.99 Aligned_cols=289 Identities=23% Similarity=0.241 Sum_probs=163.2
Q ss_pred CCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEec
Q 005168 206 KLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDL 285 (710)
Q Consensus 206 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L 285 (710)
+++.++++++.+.. +|..+ .+.+++|++++|.++ .++...+..+++|++|++++|.+.++.|.+|.++++|++|++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 45555555555443 22222 245555555555555 333332333555555555555555555555555555555555
Q ss_pred cCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccc--ccchhhcCCCC
Q 005168 286 SNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG--PIPVEFCQLYS 363 (710)
Q Consensus 286 s~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~ 363 (710)
++|.++ .+|..++ ++|++|++++|.+.. ..+..|.++++|++|++++|.+.. ..+..|.++++
T Consensus 108 s~n~l~-~l~~~~~---~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 108 SKNQLK-ELPEKMP---KTLQELRVHENEITK-----------VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp CSSCCS-BCCSSCC---TTCCEEECCSSCCCB-----------BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred CCCcCC-ccChhhc---ccccEEECCCCcccc-----------cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 555555 4544433 355555544444332 333344555555555555555432 33444555555
Q ss_pred CCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccC
Q 005168 364 LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLC 443 (710)
Q Consensus 364 L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 443 (710)
|++|++++|.+..++ ..+ .++|++|++++|++++..+..+.
T Consensus 173 L~~L~l~~n~l~~l~-------------------------------------~~~--~~~L~~L~l~~n~l~~~~~~~~~ 213 (330)
T 1xku_A 173 LSYIRIADTNITTIP-------------------------------------QGL--PPSLTELHLDGNKITKVDAASLK 213 (330)
T ss_dssp CCEEECCSSCCCSCC-------------------------------------SSC--CTTCSEEECTTSCCCEECTGGGT
T ss_pred cCEEECCCCccccCC-------------------------------------ccc--cccCCEEECCCCcCCccCHHHhc
Confidence 555555555444221 111 15677777777777766666777
Q ss_pred CCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCC
Q 005168 444 ELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCN 523 (710)
Q Consensus 444 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 523 (710)
.+++|+.|++++|.+++..+..+.. +++|+.|++++|
T Consensus 214 ~l~~L~~L~Ls~n~l~~~~~~~~~~-------------------------------------------l~~L~~L~L~~N 250 (330)
T 1xku_A 214 GLNNLAKLGLSFNSISAVDNGSLAN-------------------------------------------TPHLRELHLNNN 250 (330)
T ss_dssp TCTTCCEEECCSSCCCEECTTTGGG-------------------------------------------STTCCEEECCSS
T ss_pred CCCCCCEEECCCCcCceeChhhccC-------------------------------------------CCCCCEEECCCC
Confidence 7777777777777776665555544 336777777777
Q ss_pred cCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCC------ccCCEEeCcCCcCcc--cCCcccccCCCCCEEeccCC
Q 005168 524 KLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNL------KHIESLDLSYNKLNG--KIPHQLVELKTLEVFSVAYN 595 (710)
Q Consensus 524 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~Ls~N~i~~--~~~~~l~~l~~L~~L~l~~N 595 (710)
.++ .+|..+..+++|++|++++|+++++.+..|... ++++.|++++|++.. ..|..|..+.+++.+++++|
T Consensus 251 ~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 251 KLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 777 456667777777777777777777776666433 567777777777753 45566777777777777776
Q ss_pred c
Q 005168 596 N 596 (710)
Q Consensus 596 ~ 596 (710)
+
T Consensus 330 ~ 330 (330)
T 1xku_A 330 K 330 (330)
T ss_dssp -
T ss_pred C
Confidence 3
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2e-31 Score=273.91 Aligned_cols=259 Identities=34% Similarity=0.529 Sum_probs=215.0
Q ss_pred CCCCEEeccCCccCC--cCChhhhcCCCCCcEEEccC-CCCcCeeeccCccCccCcCccccCCCccceeeCccCcccccc
Q 005168 278 KFLQLLDLSNNQLTG--EIPEHLAVGCVNLQFLMLSN-NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI 354 (710)
Q Consensus 278 ~~L~~L~Ls~n~l~~--~i~~~~~~~l~~L~~L~Ls~-n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 354 (710)
.+++.|++++|.+.+ .+|..+. ++++|++|++++ |.+. +.+|..|..+++|++|++++|.+++..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~-----------~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLV-----------GPIPPAIAKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEE-----------SCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred ceEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCCccc-----------ccCChhHhcCCCCCEEECcCCeeCCcC
Confidence 467788888888776 5665443 577777777763 5444 256677777777777777777777677
Q ss_pred chhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcc
Q 005168 355 PVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNL 434 (710)
Q Consensus 355 ~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 434 (710)
|..|..+++|++|++++|.+.+ ..|..+..+++|++|++++|++
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~------------------------------------~~p~~~~~l~~L~~L~L~~N~l 161 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSG------------------------------------TLPPSISSLPNLVGITFDGNRI 161 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEES------------------------------------CCCGGGGGCTTCCEEECCSSCC
T ss_pred CHHHhCCCCCCEEeCCCCccCC------------------------------------cCChHHhcCCCCCeEECcCCcc
Confidence 7777777777777777776653 4566677889999999999999
Q ss_pred cccCCcccCCCC-CCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccc
Q 005168 435 EGEVPVQLCELN-QLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLS 513 (710)
Q Consensus 435 ~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 513 (710)
++..|..+..++ +|++|++++|.+++.+|..+.. ++
T Consensus 162 ~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-------------------------------------------l~ 198 (313)
T 1ogq_A 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-------------------------------------------LN 198 (313)
T ss_dssp EEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-------------------------------------------CC
T ss_pred cCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-------------------------------------------Cc
Confidence 988888898888 8999999999999888877754 22
Q ss_pred cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEecc
Q 005168 514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA 593 (710)
Q Consensus 514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~ 593 (710)
|+.|++++|.+++..|..|..+++|+.|+|++|.+++..+. +..+++|++|++++|++++.+|..+..+++|+.|+++
T Consensus 199 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp -CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred -ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 89999999999999999999999999999999999977665 8889999999999999999999999999999999999
Q ss_pred CCccccccCCCccccccCCcccccCCCCCCCCCCCCC
Q 005168 594 YNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPIC 630 (710)
Q Consensus 594 ~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c 630 (710)
+|++++.+|.. ..++.+..+.+.+|++.|+.|...|
T Consensus 277 ~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 277 FNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp SSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred CCcccccCCCC-ccccccChHHhcCCCCccCCCCCCC
Confidence 99999999986 7889999999999999999877667
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.8e-30 Score=265.79 Aligned_cols=250 Identities=24% Similarity=0.242 Sum_probs=181.5
Q ss_pred CCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEE
Q 005168 181 DLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFN 260 (710)
Q Consensus 181 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~ 260 (710)
+++.++++++.++ .+|..+ .+.++.|++++|++.+..+..|..+++|++|++++|.+++..|..+.. +++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEE
Confidence 6899999998887 466543 378999999999999988888999999999999999999544665554 89999999
Q ss_pred ccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCcc
Q 005168 261 ISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWL 340 (710)
Q Consensus 261 L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L 340 (710)
+++|.++.+ |..+. ++|++|++++|.++ .++...+.++++|++|++++|.+.. .+..+..+.++++|
T Consensus 107 Ls~n~l~~l-~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l~~L 173 (330)
T 1xku_A 107 LSKNQLKEL-PEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKS---------SGIENGAFQGMKKL 173 (330)
T ss_dssp CCSSCCSBC-CSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCG---------GGBCTTGGGGCTTC
T ss_pred CCCCcCCcc-Chhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCc---------cCcChhhccCCCCc
Confidence 999999854 44433 79999999999998 8888888899999999999988753 12456789999999
Q ss_pred ceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhh
Q 005168 341 IHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIG 419 (710)
Q Consensus 341 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~ 419 (710)
++|++++|.+... |..+. ++|++|++++|.+.+..+..+. +++|++|++++|.+++ ..+.++.
T Consensus 174 ~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------------~~~~~~~ 237 (330)
T 1xku_A 174 SYIRIADTNITTI-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-------------VDNGSLA 237 (330)
T ss_dssp CEEECCSSCCCSC-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-------------ECTTTGG
T ss_pred CEEECCCCccccC-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-------------eChhhcc
Confidence 9999999999864 43333 7899999999988866554444 4455555444443332 2333444
Q ss_pred cCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCC
Q 005168 420 ELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPC 465 (710)
Q Consensus 420 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 465 (710)
.+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhh
Confidence 4555555555555554 33444445555555555555554433333
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.6e-30 Score=267.56 Aligned_cols=288 Identities=25% Similarity=0.288 Sum_probs=177.0
Q ss_pred CCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEec
Q 005168 206 KLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDL 285 (710)
Q Consensus 206 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L 285 (710)
+++.++++++.+.. +|..+ .+++++|++++|.++ .++...+..+++|++|++++|.++++.|.+|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 34455555554442 22222 245566666666655 333322233556666666666666555556666666666666
Q ss_pred cCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccc--ccchhhcCCCC
Q 005168 286 SNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG--PIPVEFCQLYS 363 (710)
Q Consensus 286 s~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~ 363 (710)
++|.++ .+|..++ ++|++|++++|.+.. ..+..|.++++|++|++++|.+.. ..+..|..+ +
T Consensus 110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRK-----------VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp CSSCCC-SCCSSCC---TTCCEEECCSSCCCC-----------CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred CCCcCC-ccCcccc---ccCCEEECCCCccCc-----------cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 666665 5555443 456666655555443 334455666666666666666542 445555555 6
Q ss_pred CCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccC
Q 005168 364 LQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLC 443 (710)
Q Consensus 364 L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 443 (710)
|++|++++|.+.+++...+ ++|++|++++|.++ +..+..+..+++|++|++++|++++..+..+.
T Consensus 174 L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~-------------~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 174 LNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQ-------------AIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp CSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCC-------------CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred cCEEECcCCCCCccCcccc--CCCCEEECCCCcCC-------------ccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 6666666666665443322 46666655444443 24445666777888888888888777666777
Q ss_pred CCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCC
Q 005168 444 ELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCN 523 (710)
Q Consensus 444 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 523 (710)
.+++|++|++++|+++ .+|..+.. +++|+.|++++|
T Consensus 239 ~l~~L~~L~L~~N~l~-~lp~~l~~-------------------------------------------l~~L~~L~l~~N 274 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS-RVPAGLPD-------------------------------------------LKLLQVVYLHTN 274 (332)
T ss_dssp GCTTCCEEECCSSCCC-BCCTTGGG-------------------------------------------CTTCCEEECCSS
T ss_pred CCCCCCEEECCCCcCe-ecChhhhc-------------------------------------------CccCCEEECCCC
Confidence 7888888888888776 45555544 347888888888
Q ss_pred cCCCCCCccccc------cCCCCEEeCCCccCC--CCCchhhcCCccCCEEeCcCCc
Q 005168 524 KLIGHIPPQIGN------LTRIQTLNLSYNNLT--GLIPSTFSNLKHIESLDLSYNK 572 (710)
Q Consensus 524 ~l~~~~~~~~~~------l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~ 572 (710)
++++..+..|.. ..+|+.|++++|.+. ++.+.+|..+++|+.+++++|+
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 887776666654 366888899988887 6788888888999999988875
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=6.3e-31 Score=270.27 Aligned_cols=254 Identities=28% Similarity=0.476 Sum_probs=154.9
Q ss_pred CccEEEccCCcCcc--cCCccCcCCCCCCEEeccC-CccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcC
Q 005168 255 SLYVFNISMNALDG--SIPSSFGNMKFLQLLDLSN-NQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIP 331 (710)
Q Consensus 255 ~L~~L~L~~n~i~~--~~~~~f~~l~~L~~L~Ls~-n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~ 331 (710)
+++.|++++|.+.+ .+|..|.++++|++|++++ |.+.+.+|..+. ++++|++|++++|.+.. ..|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~-----------~~p 118 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSG-----------AIP 118 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEE-----------ECC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCC-----------cCC
Confidence 44555555555544 4445555555555555553 445444444332 45555555554444332 345
Q ss_pred ccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCc
Q 005168 332 GWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLN 411 (710)
Q Consensus 332 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~ 411 (710)
..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--------------------------------- 165 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--------------------------------- 165 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC---------------------------------
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC---------------------------------
Confidence 55666666666666666666666666666666666666666665332
Q ss_pred ccCChhhhcCC-CccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCcccccccee
Q 005168 412 GSIPDWIGELS-QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFF 490 (710)
Q Consensus 412 ~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (710)
|..+..++ +|++|++++|++++..|..+..++ |++|++++|.+++..|..|..
T Consensus 166 ---p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~---------------------- 219 (313)
T 1ogq_A 166 ---PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS---------------------- 219 (313)
T ss_dssp ---CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT----------------------
T ss_pred ---CHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc----------------------
Confidence 22333333 555555555555555555555554 555555555555555544443
Q ss_pred ecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcC
Q 005168 491 IEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSY 570 (710)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 570 (710)
+++|+.|++++|.+++..+. +..+++|++|+|++|.+++..|..|..+++|++|++++
T Consensus 220 ---------------------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 220 ---------------------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp ---------------------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ---------------------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 22556666666666544443 66778888888888888888888888888888888888
Q ss_pred CcCcccCCcccccCCCCCEEeccCCccccccC
Q 005168 571 NKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL 602 (710)
Q Consensus 571 N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 602 (710)
|++++.+|+. ..+++|+.+++++|+..|..|
T Consensus 278 N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 278 NNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp SEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 8888888876 778888888888888766543
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.5e-33 Score=303.01 Aligned_cols=353 Identities=19% Similarity=0.118 Sum_probs=215.7
Q ss_pred cChhccCCCCCCEEEccCCcCcccCChhHhhcCC----CCcEEEccCCcccc----cCccCccCCCCCCEEEcccCcCcc
Q 005168 172 FPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNT----KLATLFLVNDSLAG----PFWLPIHSHKRLGILDISNNNIRG 243 (710)
Q Consensus 172 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~ls~n~i~~ 243 (710)
++..+..+++|++|++++|.+.+..+..++..++ +|++|++++|.+.. .++..+..+++|++|++++|.+++
T Consensus 48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 3556667788999999988887766656555566 68899998888874 446678888889999999888874
Q ss_pred cCChhhhh----cCCCccEEEccCCcCcccC----CccCcCCCCCCEEeccCCccCCcCChhhh----cCCCCCcEEEcc
Q 005168 244 HIPVEIGD----VLPSLYVFNISMNALDGSI----PSSFGNMKFLQLLDLSNNQLTGEIPEHLA----VGCVNLQFLMLS 311 (710)
Q Consensus 244 ~~~~~~~~----~~~~L~~L~L~~n~i~~~~----~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~----~~l~~L~~L~Ls 311 (710)
..+..+.. ..++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+. ...++|++|+++
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence 33333332 2346888888888877533 45556677888888888877632222222 234577777777
Q ss_pred CCCCcCeeeccCccCccCcCccccCCCccceeeCccCcccccc-----chhhcCCCCCCEEECCCCcCcccCCCCCCCCC
Q 005168 312 NNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI-----PVEFCQLYSLQILDISDNNISGSLPSCFHPLS 386 (710)
Q Consensus 312 ~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~ 386 (710)
+|.+... . ...++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.....
T Consensus 208 ~n~l~~~------~-~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~------ 274 (461)
T 1z7x_W 208 SCGVTSD------N-CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG------ 274 (461)
T ss_dssp TSCCBTT------H-HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH------
T ss_pred CCCCcHH------H-HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH------
Confidence 7665420 0 0012444556666666666666655432 12222456666666666655431000
Q ss_pred cceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccC-----CCCCCCEEEccCCccccc
Q 005168 387 IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLC-----ELNQLQLLDLSNNSLHGS 461 (710)
Q Consensus 387 L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~ 461 (710)
.++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.
T Consensus 275 --------------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 275 --------------------------DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp --------------------------HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred --------------------------HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 1344556677777777777777543322222 235777788877776643
Q ss_pred CCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccc-----c
Q 005168 462 IPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGN-----L 536 (710)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l 536 (710)
....+... ....++|+.|++++|.+++..+..+.. .
T Consensus 329 ~~~~l~~~---------------------------------------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 369 (461)
T 1z7x_W 329 CCSHFSSV---------------------------------------LAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369 (461)
T ss_dssp GHHHHHHH---------------------------------------HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHH---------------------------------------HhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence 11111000 011346777777777776544444432 5
Q ss_pred CCCCEEeCCCccCCC----CCchhhcCCccCCEEeCcCCcCcccCCccc-----ccCCCCCEEeccCCccccccC
Q 005168 537 TRIQTLNLSYNNLTG----LIPSTFSNLKHIESLDLSYNKLNGKIPHQL-----VELKTLEVFSVAYNNLSGEIL 602 (710)
Q Consensus 537 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l-----~~l~~L~~L~l~~N~l~~~~~ 602 (710)
++|++|+|++|.+++ ..+..+..+++|++|++++|+++......+ ....+|+.|++.++.+....+
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~ 444 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 444 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence 688888888888875 456677778888888888888774322222 123467777777777665443
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.5e-32 Score=299.65 Aligned_cols=368 Identities=15% Similarity=0.118 Sum_probs=252.7
Q ss_pred CCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccc----cCccCccCCCCCCEEEcccCcCcccCChhhhhcCC-
Q 005168 180 HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAG----PFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLP- 254 (710)
Q Consensus 180 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~- 254 (710)
+++++|+++++.++......++..+++|++|++++|.+.+ .++..+..+++|++|++++|.+++..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3566777777776654444444667777777777777664 23445666777888888888776444444554454
Q ss_pred ---CccEEEccCCcCcc----cCCccCcCCCCCCEEeccCCccCCcCChhh----hcCCCCCcEEEccCCCCcCeeeccC
Q 005168 255 ---SLYVFNISMNALDG----SIPSSFGNMKFLQLLDLSNNQLTGEIPEHL----AVGCVNLQFLMLSNNSLKEGLYLTN 323 (710)
Q Consensus 255 ---~L~~L~L~~n~i~~----~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~----~~~l~~L~~L~Ls~n~l~~~l~l~~ 323 (710)
+|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+ +...++|++|++++|.+...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~----- 157 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA----- 157 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-----
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH-----
Confidence 68888888888774 346777788888888888887763322222 22355788888877766530
Q ss_pred ccCccCcCccccCCCccceeeCccCccccccchhhc-----CCCCCCEEECCCCcCcccC----CCCCC-CCCcceEEcc
Q 005168 324 NSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFC-----QLYSLQILDISDNNISGSL----PSCFH-PLSIEQVHLS 393 (710)
Q Consensus 324 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~i~~~~----~~~~~-~~~L~~L~l~ 393 (710)
....++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+.... +..+. +++|++|+++
T Consensus 158 --~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 158 --SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp --GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred --HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEecc
Confidence 0001244566678888888888887755444443 2568888888888777531 22232 6778888777
Q ss_pred CccccccccccCCCccCcccCChhhhcCCCccEEecCCCccccc----CCcccCCCCCCCEEEccCCcccccCCCCcccc
Q 005168 394 KNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGE----VPVQLCELNQLQLLDLSNNSLHGSIPPCFDNT 469 (710)
Q Consensus 394 ~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 469 (710)
+|.+...... ...+..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+...
T Consensus 236 ~n~l~~~~~~--------~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 307 (461)
T 1z7x_W 236 SNKLGDVGMA--------ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 307 (461)
T ss_dssp SSBCHHHHHH--------HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred CCcCChHHHH--------HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence 7766532100 01122233578999999999999854 46667789999999999999875433322210
Q ss_pred cccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCC----CCccccccCCCCEEeCC
Q 005168 470 TLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGH----IPPQIGNLTRIQTLNLS 545 (710)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls 545 (710)
- ....++|+.|++++|.+++. .+..+..+++|++|+|+
T Consensus 308 l--------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 308 L--------------------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS 349 (461)
T ss_dssp H--------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred h--------------------------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEcc
Confidence 0 00124899999999999865 35567778999999999
Q ss_pred CccCCCCCchhhcC-----CccCCEEeCcCCcCcc----cCCcccccCCCCCEEeccCCccccc
Q 005168 546 YNNLTGLIPSTFSN-----LKHIESLDLSYNKLNG----KIPHQLVELKTLEVFSVAYNNLSGE 600 (710)
Q Consensus 546 ~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~i~~----~~~~~l~~l~~L~~L~l~~N~l~~~ 600 (710)
+|.+++..+..+.. .++|++|++++|+++. .+|..+..+++|+.|++++|+++..
T Consensus 350 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 99998765555443 6799999999999986 7788888999999999999999864
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7.9e-29 Score=267.79 Aligned_cols=251 Identities=22% Similarity=0.212 Sum_probs=179.1
Q ss_pred ccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcccc
Q 005168 256 LYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG 335 (710)
Q Consensus 256 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~ 335 (710)
...++.++..++ .+|..+. ++++.|+|++|.++ .++...|.++++|++|++++|.+.. +.+..|.
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~-----------i~~~~~~ 109 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRT-----------IEIGAFN 109 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCE-----------ECGGGGT
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCc-----------cChhhcc
Confidence 445555555555 2333332 45666666666665 4554555556666666555555442 3344555
Q ss_pred CCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCC
Q 005168 336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP 415 (710)
Q Consensus 336 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~ 415 (710)
++++|++|++++|.++...+..|..+++|++|++++|.+..+ .+
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~------------------------------------~~ 153 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI------------------------------------PS 153 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE------------------------------------CT
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc------------------------------------CH
Confidence 555555555555555555455555555555555555555433 33
Q ss_pred hhhhcCCCccEEecCC-CcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCC
Q 005168 416 DWIGELSQLSHLILGH-NNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGP 494 (710)
Q Consensus 416 ~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (710)
..|..+++|++|++++ +.+....+..|.++++|++|++++|.++.. |. +..
T Consensus 154 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~-------------------------- 205 (440)
T 3zyj_A 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-PN-LTP-------------------------- 205 (440)
T ss_dssp TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-CC-CTT--------------------------
T ss_pred HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-cc-cCC--------------------------
Confidence 4466677888888887 445545556788888999999999888733 32 222
Q ss_pred CcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCc
Q 005168 495 QGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574 (710)
Q Consensus 495 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~ 574 (710)
+++|+.|+|++|.+++..|..|.++++|++|+|++|+++++.+..|.++++|+.|+|++|+++
T Consensus 206 -----------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 206 -----------------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp -----------------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred -----------------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 458999999999999888999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccCCCCCEEeccCCccccccC
Q 005168 575 GKIPHQLVELKTLEVFSVAYNNLSGEIL 602 (710)
Q Consensus 575 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 602 (710)
...++.+..+++|+.|++++|||.|+|.
T Consensus 269 ~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 269 LLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred ccChhHhccccCCCEEEcCCCCccCCCC
Confidence 8888889999999999999999999985
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=8.8e-29 Score=268.40 Aligned_cols=251 Identities=20% Similarity=0.187 Sum_probs=179.8
Q ss_pred ccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcccc
Q 005168 256 LYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG 335 (710)
Q Consensus 256 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~ 335 (710)
...++.++..++. +|..+. ++++.|+|++|.++ .++...|.++++|++|++++|.+.. +.+..|.
T Consensus 56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~-----------~~~~~~~ 120 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQ-----------IEVGAFN 120 (452)
T ss_dssp SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCE-----------ECTTTTT
T ss_pred CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCC-----------cChhhcc
Confidence 3455555555553 333322 45666666666665 4444445556666666555554442 3444555
Q ss_pred CCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCC
Q 005168 336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP 415 (710)
Q Consensus 336 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~ 415 (710)
++++|++|++++|.++...+..|..+++|++|++++|.+..+ .+
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------------------------------~~ 164 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI------------------------------------PS 164 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE------------------------------------CT
T ss_pred CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee------------------------------------CH
Confidence 555555555555555555555555555555555555555433 33
Q ss_pred hhhhcCCCccEEecCC-CcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCC
Q 005168 416 DWIGELSQLSHLILGH-NNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGP 494 (710)
Q Consensus 416 ~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (710)
..|..+++|++|++++ +.+....+..|.++++|++|++++|.+++. | .+..
T Consensus 165 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~-------------------------- 216 (452)
T 3zyi_A 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTP-------------------------- 216 (452)
T ss_dssp TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTT--------------------------
T ss_pred hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccc--------------------------
Confidence 4466677888888887 455555556788889999999999988754 2 2222
Q ss_pred CcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCc
Q 005168 495 QGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLN 574 (710)
Q Consensus 495 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~ 574 (710)
+++|+.|+|++|.+++..|..|.++++|+.|+|++|.++++.+..|.++++|+.|+|++|+++
T Consensus 217 -----------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 217 -----------------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp -----------------CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred -----------------cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 458999999999999888999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccCCCCCEEeccCCccccccC
Q 005168 575 GKIPHQLVELKTLEVFSVAYNNLSGEIL 602 (710)
Q Consensus 575 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 602 (710)
+..++.+..+++|+.|++++|+|.|+|.
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred ccChHHhccccCCCEEEccCCCcCCCCC
Confidence 8888889999999999999999999986
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=6.7e-29 Score=254.93 Aligned_cols=286 Identities=21% Similarity=0.220 Sum_probs=219.8
Q ss_pred cEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccC
Q 005168 257 YVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGN 336 (710)
Q Consensus 257 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~ 336 (710)
+.++.+++.++. +|..+ .++|++|++++|.++ .+|..+|.++++|++|++++|.+... +..+..+..
T Consensus 10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~~~ 76 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFK---------GCCSQSDFG 76 (306)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEE---------EEEEHHHHS
T ss_pred CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcc---------cCccccccc
Confidence 567888888874 44433 267889999999888 88888888888899988888876530 112455667
Q ss_pred CCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCCh
Q 005168 337 LTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPD 416 (710)
Q Consensus 337 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~ 416 (710)
+++|++|++++|.+.. .+..+..+++|++|++++|.+.+..+ ..
T Consensus 77 ~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------------------~~ 120 (306)
T 2z66_A 77 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-----------------------------------FS 120 (306)
T ss_dssp CSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTT-----------------------------------TT
T ss_pred ccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCccccccc-----------------------------------ch
Confidence 7888888888888774 45557778888888888887764322 12
Q ss_pred hhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccc-cCCCCcccccccccccCCCCCccccccceeecCCC
Q 005168 417 WIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHG-SIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQ 495 (710)
Q Consensus 417 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (710)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------------------------- 173 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--------------------------- 173 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------------------
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh---------------------------
Confidence 45667889999999999888888888899999999999999876 56666655
Q ss_pred cceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcc
Q 005168 496 GDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 575 (710)
Q Consensus 496 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 575 (710)
+++|+.|++++|.+++..|..|..+++|++|+|++|.++++.+..|..+++|++|++++|++.+
T Consensus 174 ----------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 174 ----------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp ----------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred ----------------CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 3489999999999998888999999999999999999999998899999999999999999999
Q ss_pred cCCcccccCC-CCCEEeccCCccccccCC-Ccc-ccccCCcccccCCCCCCCCCCCCCCCCCCCCCccC
Q 005168 576 KIPHQLVELK-TLEVFSVAYNNLSGEILE-WTA-QFATFNKSSYEGNTFLCGLPLPICRSPATMSEASI 641 (710)
Q Consensus 576 ~~~~~l~~l~-~L~~L~l~~N~l~~~~~~-~~~-~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~ 641 (710)
..|..+..++ +|+.|++++|++.|.|.. |+. ++..........+.. .|..|...++...
T Consensus 238 ~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~-------~C~~p~~~~g~~~ 299 (306)
T 2z66_A 238 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM-------ECATPSDKQGMPV 299 (306)
T ss_dssp CSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGC-------BEEESGGGTTCBG
T ss_pred cCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccccc-------ccCCchhhCCcee
Confidence 9999999884 999999999999998752 221 222222333333433 3566666655533
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=266.10 Aligned_cols=280 Identities=20% Similarity=0.176 Sum_probs=158.5
Q ss_pred CCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEE
Q 005168 229 KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFL 308 (710)
Q Consensus 229 ~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L 308 (710)
+.....+.+++.++ .+|..++ ++|++|++++|.++++.+..|.++++|++|++++|.++ .++...+.++++|++|
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHL 105 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEE
T ss_pred CCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEE
Confidence 33344555666665 5565443 35666666666666555555666666666666666665 4444444455666666
Q ss_pred EccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccc-hhhcCCCCCCEEECCCCc-CcccCCCCCCCCC
Q 005168 309 MLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIP-VEFCQLYSLQILDISDNN-ISGSLPSCFHPLS 386 (710)
Q Consensus 309 ~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~~~ 386 (710)
++++|.+.. ..+..|.++++|++|++++|.+....+ ..|..+++|++|++++|. +.+..+.
T Consensus 106 ~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~------ 168 (353)
T 2z80_A 106 DLSYNYLSN-----------LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK------ 168 (353)
T ss_dssp ECCSSCCSS-----------CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT------
T ss_pred ECCCCcCCc-----------CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH------
Confidence 555555442 222335555555555555555554333 345556666666666552 3333222
Q ss_pred cceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCc
Q 005168 387 IEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCF 466 (710)
Q Consensus 387 L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 466 (710)
.+.++++|++|++++|.+++..|..+..+++|++|++++|.+....+..+
T Consensus 169 ------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 218 (353)
T 2z80_A 169 ------------------------------DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV 218 (353)
T ss_dssp ------------------------------TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHH
T ss_pred ------------------------------HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhh
Confidence 23334444445555554444444445555555555555554432111111
Q ss_pred ccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccc---cccCCCCEEe
Q 005168 467 DNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQI---GNLTRIQTLN 543 (710)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~ 543 (710)
. .+++|+.|++++|.+++..+..+ ...+.++.++
T Consensus 219 ~-------------------------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 219 D-------------------------------------------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp H-------------------------------------------HTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred h-------------------------------------------hcccccEEECCCCccccccccccccccccchhhccc
Confidence 1 12345555555555554333322 2345566777
Q ss_pred CCCccCCCC----CchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCC
Q 005168 544 LSYNNLTGL----IPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE 603 (710)
Q Consensus 544 Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 603 (710)
|+++.+++. .|+.+..+++|++|++++|+++...+..+..+++|+.|++++|++.|.||.
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 777766642 466788899999999999999954444568999999999999999999863
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.2e-28 Score=253.00 Aligned_cols=279 Identities=23% Similarity=0.248 Sum_probs=221.2
Q ss_pred CEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcC---ChhhhcCCCCCcEE
Q 005168 232 GILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEI---PEHLAVGCVNLQFL 308 (710)
Q Consensus 232 ~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i---~~~~~~~l~~L~~L 308 (710)
+.++.+++.++ .+|..++ +++++|++++|.++.+.+..|.++++|++|++++|.++ .+ +...+ ++++|++|
T Consensus 10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~-~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDF-GTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-EEEEEEHHHH-SCSCCCEE
T ss_pred CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC-cccCcccccc-cccccCEE
Confidence 46788888888 8887653 58999999999998776677889999999999999887 44 34444 68999999
Q ss_pred EccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccc-hhhcCCCCCCEEECCCCcCcccCCCCCCCCCc
Q 005168 309 MLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIP-VEFCQLYSLQILDISDNNISGSLPSCFHPLSI 387 (710)
Q Consensus 309 ~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L 387 (710)
++++|.+.. ++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+
T Consensus 84 ~Ls~n~i~~------------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------- 143 (306)
T 2z66_A 84 DLSFNGVIT------------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-------- 143 (306)
T ss_dssp ECCSCSEEE------------EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST--------
T ss_pred ECCCCcccc------------ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch--------
Confidence 999888763 56668899999999999999987665 678899999999999998875433
Q ss_pred ceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccc-cCCcccCCCCCCCEEEccCCcccccCCCCc
Q 005168 388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEG-EVPVQLCELNQLQLLDLSNNSLHGSIPPCF 466 (710)
Q Consensus 388 ~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 466 (710)
..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+
T Consensus 144 ----------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 195 (306)
T 2z66_A 144 ----------------------------GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195 (306)
T ss_dssp ----------------------------TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ----------------------------hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh
Confidence 334556778888888888775 467778888888888888888887777777
Q ss_pred ccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCC
Q 005168 467 DNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSY 546 (710)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 546 (710)
.. +++|+.|++++|.+++..+..|..+++|++|+|++
T Consensus 196 ~~-------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 196 NS-------------------------------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp TT-------------------------------------------CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT
T ss_pred cC-------------------------------------------CCCCCEEECCCCccCccChhhccCcccCCEeECCC
Confidence 55 34788888888888887777889999999999999
Q ss_pred ccCCCCCchhhcCCc-cCCEEeCcCCcCcccCCc--ccccCCCCCEEeccCCccccccCCCccc
Q 005168 547 NNLTGLIPSTFSNLK-HIESLDLSYNKLNGKIPH--QLVELKTLEVFSVAYNNLSGEILEWTAQ 607 (710)
Q Consensus 547 n~l~~~~~~~~~~l~-~L~~L~Ls~N~i~~~~~~--~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 607 (710)
|.+++..+..+..++ +|++|++++|++.+..+. ....+...+.+.+..+.+.|..|.++..
T Consensus 233 N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 233 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp SCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred CCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 999999998998885 899999999999864331 1223344555667788899988876544
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.8e-27 Score=241.59 Aligned_cols=260 Identities=21% Similarity=0.237 Sum_probs=177.6
Q ss_pred CEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcC
Q 005168 281 QLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQ 360 (710)
Q Consensus 281 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 360 (710)
++++.+++.++ .+|... .++|++|++++|.+.. ..+..|..+++|++|++++|.+.+..+..|.+
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~-----------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 78 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISH-----------VPAASFRACRNLTILWLHSNVLARIDAAAFTG 78 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCc-----------cCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence 45566666665 555433 2456666655555443 33445566666666666666666655666666
Q ss_pred CCCCCEEECCCCc-CcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCC
Q 005168 361 LYSLQILDISDNN-ISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP 439 (710)
Q Consensus 361 l~~L~~L~ls~n~-i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 439 (710)
+++|++|++++|. +... .|..+..+++|++|++++|.+++..+
T Consensus 79 l~~L~~L~l~~n~~l~~~------------------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~ 122 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSV------------------------------------DPATFHGLGRLHTLHLDRCGLQELGP 122 (285)
T ss_dssp CTTCCEEECCSCTTCCCC------------------------------------CTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred ccCCCEEeCCCCCCcccc------------------------------------CHHHhcCCcCCCEEECCCCcCCEECH
Confidence 6777777776665 4432 23345556777777777777776667
Q ss_pred cccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEE
Q 005168 440 VQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLY 519 (710)
Q Consensus 440 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 519 (710)
..+..+++|++|++++|.+++..+..|.. +++|+.|+
T Consensus 123 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------------------l~~L~~L~ 159 (285)
T 1ozn_A 123 GLFRGLAALQYLYLQDNALQALPDDTFRD-------------------------------------------LGNLTHLF 159 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------------------------------CTTCCEEE
T ss_pred hHhhCCcCCCEEECCCCcccccCHhHhcc-------------------------------------------CCCccEEE
Confidence 77777778888888888777665555554 33788888
Q ss_pred CcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCcccc
Q 005168 520 LSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG 599 (710)
Q Consensus 520 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~ 599 (710)
+++|.+++..+..|..+++|++|++++|.++++.|..|..+++|+.|++++|++++..++.+..+++|+.|++++|++.|
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 88888877777778889999999999999998888999999999999999999997777778899999999999999999
Q ss_pred ccCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCccCC
Q 005168 600 EILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIG 642 (710)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~ 642 (710)
.|+.. ..+..+.......+.+. |..|...++..+.
T Consensus 240 ~~~~~-~~~~~l~~~~~~~~~~~-------c~~p~~l~g~~l~ 274 (285)
T 1ozn_A 240 DCRAR-PLWAWLQKFRGSSSEVP-------CSLPQRLAGRDLK 274 (285)
T ss_dssp SGGGH-HHHHHHHHCCSEECCCB-------EEESGGGTTCBGG
T ss_pred CCCcH-HHHHHHHhcccccCccc-------cCCchHhCCcChh
Confidence 88641 11122233333344443 5566655555433
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.4e-28 Score=253.38 Aligned_cols=282 Identities=20% Similarity=0.196 Sum_probs=187.0
Q ss_pred CCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEe
Q 005168 205 TKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLD 284 (710)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~ 284 (710)
+.....+.+++.++.. |..+ .++|++|++++|.++ .+|...+..+++|++|++++|.++++.+.+|.++++|++|+
T Consensus 31 ~~~~~c~~~~~~l~~i-P~~~--~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 31 DRNGICKGSSGSLNSI-PSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp CTTSEEECCSTTCSSC-CTTC--CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCeEeeCCCCCcccc-cccc--cccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 3333445555555432 2222 246777777777777 55554444477788888888887777777788888888888
Q ss_pred ccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcC-ccccCCCccceeeCccC-ccccccchhhcCCC
Q 005168 285 LSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIP-GWLGNLTWLIHIIMPEN-HLEGPIPVEFCQLY 362 (710)
Q Consensus 285 Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~ 362 (710)
+++|.++ .+|...+.++++|++|++++|.+.. ..+ ..+..+++|++|++++| .+....+..|.+++
T Consensus 107 Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-----------l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 174 (353)
T 2z80_A 107 LSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKT-----------LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174 (353)
T ss_dssp CCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSS-----------SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred CCCCcCC-cCCHhHhCCCccCCEEECCCCCCcc-----------cCchhhhccCCCCcEEECCCCccccccCHHHccCCC
Confidence 8888887 7777777778888888877777653 223 36777888888888887 46666677788888
Q ss_pred CCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCccc
Q 005168 363 SLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQL 442 (710)
Q Consensus 363 ~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 442 (710)
+|++|++++|.+.+..+..+ ..+++|++|++++|.++...+..+
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~ 218 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSL------------------------------------KSIQNVSHLILHMKQHILLLEIFV 218 (353)
T ss_dssp EEEEEEEEETTCCEECTTTT------------------------------------TTCSEEEEEEEECSCSTTHHHHHH
T ss_pred CCCEEECCCCCcCccCHHHH------------------------------------hccccCCeecCCCCccccchhhhh
Confidence 88888888887775544433 334455555555555443222223
Q ss_pred CCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcC
Q 005168 443 CELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSC 522 (710)
Q Consensus 443 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 522 (710)
..+++|+.|++++|.+++..+..+... ...+.++.+++++
T Consensus 219 ~~~~~L~~L~L~~n~l~~~~~~~l~~~----------------------------------------~~~~~l~~l~L~~ 258 (353)
T 2z80_A 219 DVTSSVECLELRDTDLDTFHFSELSTG----------------------------------------ETNSLIKKFTFRN 258 (353)
T ss_dssp HHTTTEEEEEEESCBCTTCCCC----------------------------------------------CCCCCCEEEEES
T ss_pred hhcccccEEECCCCccccccccccccc----------------------------------------cccchhhcccccc
Confidence 345555555555555554333222110 0123455666666
Q ss_pred CcCCC----CCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC
Q 005168 523 NKLIG----HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 578 (710)
Q Consensus 523 n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~ 578 (710)
+.+.+ .+|..+..+++|++|+|++|+++.+++..|..+++|++|++++|++.+..|
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 66554 356778899999999999999998877778999999999999999997554
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=8.5e-27 Score=251.83 Aligned_cols=249 Identities=28% Similarity=0.324 Sum_probs=205.1
Q ss_pred CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEE
Q 005168 230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLM 309 (710)
Q Consensus 230 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~ 309 (710)
..+.++.++..++ .+|..+. ++++.|+|++|.+..+.+..|.++++|++|+|++|.++ .++...|.++++|++|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence 3567888888888 8887664 58999999999999888889999999999999999998 78888888899999999
Q ss_pred ccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCc-CcccCCCCCCCCCcc
Q 005168 310 LSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNN-ISGSLPSCFHPLSIE 388 (710)
Q Consensus 310 Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~~~L~ 388 (710)
+++|.+.. ..+..|..+++|++|++++|.+....+..|..+++|++|++++|. +..+.
T Consensus 119 L~~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~---------- 177 (440)
T 3zyj_A 119 LFDNRLTT-----------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS---------- 177 (440)
T ss_dssp CCSSCCSS-----------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC----------
T ss_pred CCCCcCCe-----------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC----------
Confidence 88887764 556678999999999999999998888889999999999999854 33222
Q ss_pred eEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCccc
Q 005168 389 QVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDN 468 (710)
Q Consensus 389 ~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 468 (710)
+..|.++++|++|++++|.++. +| .+..+++|+.|++++|.+++..|..|.+
T Consensus 178 --------------------------~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 229 (440)
T 3zyj_A 178 --------------------------EGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQG 229 (440)
T ss_dssp --------------------------TTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTT
T ss_pred --------------------------cchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhcc
Confidence 2345567778888888888773 33 3777888888888888888777777766
Q ss_pred ccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCcc
Q 005168 469 TTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNN 548 (710)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 548 (710)
+. +|+.|+|++|++++..+..|.++++|++|+|++|+
T Consensus 230 l~-------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 230 LM-------------------------------------------HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp CT-------------------------------------------TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred Cc-------------------------------------------cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 33 78888888888888888888889999999999999
Q ss_pred CCCCCchhhcCCccCCEEeCcCCcCcc
Q 005168 549 LTGLIPSTFSNLKHIESLDLSYNKLNG 575 (710)
Q Consensus 549 l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 575 (710)
++++.++.|..+++|+.|+|++|++..
T Consensus 267 l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 267 LTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCccChhHhccccCCCEEEcCCCCccC
Confidence 998888888889999999999998864
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1e-26 Score=252.18 Aligned_cols=248 Identities=23% Similarity=0.269 Sum_probs=186.7
Q ss_pred CCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEc
Q 005168 231 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 310 (710)
Q Consensus 231 L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L 310 (710)
...++.++..++ .+|..+. ++++.|+|++|.++++.+..|.++++|+.|+|++|.++ .++...|.++++|++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence 456777777777 7776553 47888888888888887888888888888888888887 677777778888888888
Q ss_pred cCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCc-CcccCCCCCCCCCcce
Q 005168 311 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNN-ISGSLPSCFHPLSIEQ 389 (710)
Q Consensus 311 s~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~~~L~~ 389 (710)
++|.+.. ..+..|..+++|++|++++|.+....+..|..+++|++|++++|. +..+.+
T Consensus 131 ~~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~---------- 189 (452)
T 3zyi_A 131 FDNWLTV-----------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE---------- 189 (452)
T ss_dssp CSSCCSB-----------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT----------
T ss_pred CCCcCCc-----------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh----------
Confidence 7777654 556668888888888888888887777788888888888888743 332222
Q ss_pred EEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccc
Q 005168 390 VHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNT 469 (710)
Q Consensus 390 L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 469 (710)
..|.++++|++|++++|.+++. | .+..+++|+.|++++|.+++..|..|.++
T Consensus 190 --------------------------~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 190 --------------------------GAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp --------------------------TTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred --------------------------hhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCc
Confidence 2345566777777777777643 2 36667777777777777776666666553
Q ss_pred cccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccC
Q 005168 470 TLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNL 549 (710)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 549 (710)
++|+.|++++|.+++..+..|.++++|++|+|++|++
T Consensus 242 -------------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 242 -------------------------------------------SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp -------------------------------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred -------------------------------------------cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 3777777777777777777788888888888888888
Q ss_pred CCCCchhhcCCccCCEEeCcCCcCcc
Q 005168 550 TGLIPSTFSNLKHIESLDLSYNKLNG 575 (710)
Q Consensus 550 ~~~~~~~~~~l~~L~~L~Ls~N~i~~ 575 (710)
++++++.|..+++|+.|+|++|++..
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CccChHHhccccCCCEEEccCCCcCC
Confidence 88888888888888888888888764
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=8.1e-27 Score=236.69 Aligned_cols=255 Identities=23% Similarity=0.219 Sum_probs=155.5
Q ss_pred CEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEcc
Q 005168 232 GILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLS 311 (710)
Q Consensus 232 ~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls 311 (710)
++++.+++.++ .+|..+ .+++++|++++|.++++.+..|.++++|++|++++|.++ .++...+.++++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence 56677777776 666544 347777777777777666667777777777777777776 4544445556666666665
Q ss_pred CCC-CcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceE
Q 005168 312 NNS-LKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQV 390 (710)
Q Consensus 312 ~n~-l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L 390 (710)
+|. +.. ..+..|..+++|++|++++|.+.+..+..|..++
T Consensus 89 ~n~~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------- 129 (285)
T 1ozn_A 89 DNAQLRS-----------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA---------------------------- 129 (285)
T ss_dssp SCTTCCC-----------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT----------------------------
T ss_pred CCCCccc-----------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc----------------------------
Confidence 554 332 2234444444444444444444444344444444
Q ss_pred EccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCccccc
Q 005168 391 HLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTT 470 (710)
Q Consensus 391 ~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 470 (710)
+|++|++++|++++..+..|..+++|++|++++|.+++..+..|..
T Consensus 130 --------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-- 175 (285)
T 1ozn_A 130 --------------------------------ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-- 175 (285)
T ss_dssp --------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT--
T ss_pred --------------------------------CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC--
Confidence 4444444444444334444555555555555555555444444433
Q ss_pred ccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCC
Q 005168 471 LYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLT 550 (710)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 550 (710)
+++|+.|++++|.+++..|..|..+++|++|++++|.++
T Consensus 176 -----------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 176 -----------------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred -----------------------------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 225666666666666566677777888888888888888
Q ss_pred CCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCcc
Q 005168 551 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTA 606 (710)
Q Consensus 551 ~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 606 (710)
++.++.+..+++|++|++++|++....+.. .-...++.+....+.+.|..|..+.
T Consensus 215 ~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 215 ALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp CCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred cCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence 888888888888888888888887544321 1112344555778888888887543
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.3e-25 Score=247.51 Aligned_cols=268 Identities=26% Similarity=0.255 Sum_probs=159.3
Q ss_pred CCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEec
Q 005168 206 KLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDL 285 (710)
Q Consensus 206 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L 285 (710)
+++.|+++++.++. +|..+. ++|++|++++|.++ .+|. .+++|++|++++|++++ +|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 46666666666653 333332 55666666666665 5554 24566666666666553 222 4555666666
Q ss_pred cCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCC
Q 005168 286 SNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQ 365 (710)
Q Consensus 286 s~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 365 (710)
++|.++ .+|. .+++|++|++++|.+.. +|.. +++|++|++++|.+++. |. ..++|+
T Consensus 109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~~------------lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~ 164 (622)
T 3g06_A 109 FSNPLT-HLPA----LPSGLCKLWIFGNQLTS------------LPVL---PPGLQELSVSDNQLASL-PA---LPSELC 164 (622)
T ss_dssp CSCCCC-CCCC----CCTTCCEEECCSSCCSC------------CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCC
T ss_pred cCCcCC-CCCC----CCCCcCEEECCCCCCCc------------CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCC
Confidence 666655 4444 34555555555554442 1211 24445555555544432 11 123444
Q ss_pred EEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCC
Q 005168 366 ILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCEL 445 (710)
Q Consensus 366 ~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 445 (710)
.|++++|.++++ | ..+++|+.|++++|.+++. |. .+
T Consensus 165 ~L~L~~N~l~~l-------------------------------------~---~~~~~L~~L~Ls~N~l~~l-~~---~~ 200 (622)
T 3g06_A 165 KLWAYNNQLTSL-------------------------------------P---MLPSGLQELSVSDNQLASL-PT---LP 200 (622)
T ss_dssp EEECCSSCCSCC-------------------------------------C---CCCTTCCEEECCSSCCSCC-CC---CC
T ss_pred EEECCCCCCCCC-------------------------------------c---ccCCCCcEEECCCCCCCCC-CC---cc
Confidence 444444444422 2 2246777777777777743 22 24
Q ss_pred CCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcC
Q 005168 446 NQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKL 525 (710)
Q Consensus 446 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 525 (710)
++|+.|++++|.++.. |.. +++|+.|++++|.+
T Consensus 201 ~~L~~L~L~~N~l~~l-~~~----------------------------------------------~~~L~~L~Ls~N~L 233 (622)
T 3g06_A 201 SELYKLWAYNNRLTSL-PAL----------------------------------------------PSGLKELIVSGNRL 233 (622)
T ss_dssp TTCCEEECCSSCCSSC-CCC----------------------------------------------CTTCCEEECCSSCC
T ss_pred chhhEEECcCCccccc-CCC----------------------------------------------CCCCCEEEccCCcc
Confidence 6778888888777632 211 23678888888888
Q ss_pred CCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccCCCc
Q 005168 526 IGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWT 605 (710)
Q Consensus 526 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 605 (710)
++ +| ..+++|+.|+|++|.|+.+++ .+++|+.|+|++|+|+ .+|..+..+++|+.|++++|++++..|..+
T Consensus 234 ~~-lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 234 TS-LP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp SC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred Cc-CC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 75 33 455788888888888886654 5678888888888888 667778888888888888888887776655
Q ss_pred cccc
Q 005168 606 AQFA 609 (710)
Q Consensus 606 ~~~~ 609 (710)
..+.
T Consensus 305 ~~L~ 308 (622)
T 3g06_A 305 REIT 308 (622)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 4443
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.3e-25 Score=232.08 Aligned_cols=235 Identities=22% Similarity=0.250 Sum_probs=138.9
Q ss_pred CCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcE
Q 005168 228 HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF 307 (710)
Q Consensus 228 ~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~ 307 (710)
.+.+++|++++|.++ .+|..++. +++|++|++++|.+. .+|..|.++++|++|++++|.++ .+|..+. ++++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCE
T ss_pred ccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCE
Confidence 355666777777766 66666655 667777777777766 55666666777777777777766 6665533 5666666
Q ss_pred EEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCc
Q 005168 308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSI 387 (710)
Q Consensus 308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L 387 (710)
|++++|.+.. .+|..+.. . ..+..|.++++|++|++++|.++
T Consensus 155 L~L~~n~~~~-----------~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~------------ 196 (328)
T 4fcg_A 155 LSIRACPELT-----------ELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR------------ 196 (328)
T ss_dssp EEEEEETTCC-----------CCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC------------
T ss_pred EECCCCCCcc-----------ccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC------------
Confidence 6666554432 23332221 0 01122344555555555555544
Q ss_pred ceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcc
Q 005168 388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFD 467 (710)
Q Consensus 388 ~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 467 (710)
.+|..+..+++|++|++++|++++ +|..+..+++|++|++++|.+.+.+|..+.
T Consensus 197 -------------------------~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~ 250 (328)
T 4fcg_A 197 -------------------------SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFG 250 (328)
T ss_dssp -------------------------CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred -------------------------cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhc
Confidence 223334445555555555555553 333455566666666666665555555554
Q ss_pred cccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCc
Q 005168 468 NTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYN 547 (710)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 547 (710)
.+ ++|+.|++++|.+.+.+|..+.++++|++|+|++|
T Consensus 251 ~l-------------------------------------------~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 251 GR-------------------------------------------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CC-------------------------------------------CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred CC-------------------------------------------CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 42 25666666666666666666677777777777777
Q ss_pred cCCCCCchhhcCCccCCEEeCcCCcCc
Q 005168 548 NLTGLIPSTFSNLKHIESLDLSYNKLN 574 (710)
Q Consensus 548 ~l~~~~~~~~~~l~~L~~L~Ls~N~i~ 574 (710)
.+.+..|+.+.++++|+.+++..+.+.
T Consensus 288 ~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CchhhccHHHhhccCceEEeCCHHHHH
Confidence 777777777777777777777666554
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.9e-27 Score=244.91 Aligned_cols=100 Identities=22% Similarity=0.227 Sum_probs=53.5
Q ss_pred cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEecc
Q 005168 514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA 593 (710)
Q Consensus 514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~ 593 (710)
+|+.|++++|.+++.. ....+++|++|+|++|+++++++. |..+++|++|++++|+++ .+|..+..+++|+.|+++
T Consensus 170 ~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 170 TLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp TCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred cCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence 4444444444444331 112355666666666666655443 556666666666666666 345556666666666666
Q ss_pred CCccccc-cCCCccccccCCccccc
Q 005168 594 YNNLSGE-ILEWTAQFATFNKSSYE 617 (710)
Q Consensus 594 ~N~l~~~-~~~~~~~~~~~~~~~~~ 617 (710)
+|++.|. .+.++..+..++.+...
T Consensus 246 ~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 246 GNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCccCcCHHHHHhccccceEEECC
Confidence 6666633 24444444444444333
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.1e-25 Score=232.58 Aligned_cols=235 Identities=20% Similarity=0.280 Sum_probs=174.2
Q ss_pred CCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcc
Q 005168 254 PSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGW 333 (710)
Q Consensus 254 ~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~ 333 (710)
++++.|++++|.+. .+|..+.++++|++|++++|.++ .+| ..
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp------------------------------------~~ 122 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP------------------------------------DT 122 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCC------------------------------------SC
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chh------------------------------------HH
Confidence 45555555555555 33444444555555555555554 444 34
Q ss_pred ccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCccc
Q 005168 334 LGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGS 413 (710)
Q Consensus 334 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~ 413 (710)
++.+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+. .. .
T Consensus 123 ~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~-----~~----------------------~ 174 (328)
T 4fcg_A 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA-----ST----------------------D 174 (328)
T ss_dssp GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE-----EE----------------------C
T ss_pred HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHh-----hc----------------------c
Confidence 444555555555555555 3455566666666666666655544433221 00 1
Q ss_pred CChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecC
Q 005168 414 IPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEG 493 (710)
Q Consensus 414 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (710)
.+..+.++++|++|++++|+++ .+|..+..+++|++|++++|.+++ +|..+..
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~------------------------- 227 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHH------------------------- 227 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGG-------------------------
T ss_pred chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cchhhcc-------------------------
Confidence 2233566899999999999999 678889999999999999999985 4444544
Q ss_pred CCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcC
Q 005168 494 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 573 (710)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i 573 (710)
+++|+.|++++|.+.+..|..|.++++|++|+|++|.+.+..|..+.++++|++|+|++|++
T Consensus 228 ------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 228 ------------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp ------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred ------------------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 45899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccccCCCCCEEeccCCcccc
Q 005168 574 NGKIPHQLVELKTLEVFSVAYNNLSG 599 (710)
Q Consensus 574 ~~~~~~~l~~l~~L~~L~l~~N~l~~ 599 (710)
.+.+|+.+..+++|+.+++..|.+..
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred hhhccHHHhhccCceEEeCCHHHHHH
Confidence 99999999999999999999886653
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2e-27 Score=244.90 Aligned_cols=261 Identities=19% Similarity=0.171 Sum_probs=164.3
Q ss_pred EEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccC
Q 005168 233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN 312 (710)
Q Consensus 233 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~ 312 (710)
..+++.+.+. ..+..++..+++|++|++++|.+.+..|..|.++++|++|++++|.+++ ++. +.++++|++|++++
T Consensus 14 i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 14 IEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE--ETTCTTCCEEECCS
T ss_pred Eeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh--hhhcCCCCEEECcC
Confidence 3444444444 3344444444556666666666665555556666666666666666552 222 33455555555555
Q ss_pred CCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEc
Q 005168 313 NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHL 392 (710)
Q Consensus 313 n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l 392 (710)
|.+.+ +...++|++|++++|.+.+..+.. +++|++|++++|.+.+
T Consensus 90 n~l~~----------------l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~---------------- 134 (317)
T 3o53_A 90 NYVQE----------------LLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITM---------------- 134 (317)
T ss_dssp SEEEE----------------EEECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCS----------------
T ss_pred Ccccc----------------ccCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCC----------------
Confidence 54432 112244455555555444333222 2344444444444442
Q ss_pred cCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCccc-CCCCCCCEEEccCCcccccCCCCcccccc
Q 005168 393 SKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQL-CELNQLQLLDLSNNSLHGSIPPCFDNTTL 471 (710)
Q Consensus 393 ~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 471 (710)
..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+..+
T Consensus 135 --------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----- 189 (317)
T 3o53_A 135 --------------------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV----- 189 (317)
T ss_dssp --------------------GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC-----
T ss_pred --------------------ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc-----
Confidence 233445667788888888888876666655 367888888888888775422211
Q ss_pred cccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCC
Q 005168 472 YESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTG 551 (710)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 551 (710)
+++|+.|++++|.+++..+ .|..+++|++|+|++|.+++
T Consensus 190 ----------------------------------------l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 190 ----------------------------------------FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE
T ss_pred ----------------------------------------cccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccc
Confidence 4478888888888886544 48889999999999999986
Q ss_pred CCchhhcCCccCCEEeCcCCcCc-ccCCcccccCCCCCEEeccCC-cccc
Q 005168 552 LIPSTFSNLKHIESLDLSYNKLN-GKIPHQLVELKTLEVFSVAYN-NLSG 599 (710)
Q Consensus 552 ~~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~l~~l~~L~~L~l~~N-~l~~ 599 (710)
+ |..+..+++|+.|++++|++. +..|..+..+++|+.+++++| .+.+
T Consensus 229 l-~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 229 I-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp E-CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred h-hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 5 556888899999999999998 677778888888898888854 3443
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.1e-26 Score=261.68 Aligned_cols=418 Identities=13% Similarity=0.020 Sum_probs=278.6
Q ss_pred CCccchhhccCCCCCEEECCCCccc---cccC-----------hhhhcCCCCCCEEeCCCCCCC--------C-ccc-cc
Q 005168 10 NNTILSSLTHLSSLRSLNLNGNSLE---GSID-----------VKEFDSLRDLEELDIGENKID--------K-FVV-SK 65 (710)
Q Consensus 10 ~~~~~~~~~~l~~L~~L~Ls~n~i~---~~i~-----------~~~f~~l~~L~~L~Ls~n~l~--------~-l~~-l~ 65 (710)
....+..+.++++|++|+++++... +.++ ...+..+++|++|+|++|.++ . +++ |+
T Consensus 62 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~ 141 (592)
T 3ogk_B 62 TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLE 141 (592)
T ss_dssp GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCC
T ss_pred ccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCc
Confidence 3345566789999999999875421 1111 012237899999999999887 2 445 99
Q ss_pred EEecCCCcc-ee-ecCHHhhcCCCCCCEEEccCCcCCCC------------CCCcEEEccccccccc---cCcccccCCC
Q 005168 66 ELYLDDTGF-KG-TLDIREFDSFNNLEVLDMSYNKIDNL------------VVPQELRLSDNHFRIP---ISLEPLFNHS 128 (710)
Q Consensus 66 ~L~L~~~~~-~~-~i~~~~~~~l~~L~~L~Ls~n~l~~~------------~~L~~L~L~~~~l~~~---~~~~~l~~l~ 128 (710)
+|+|++|.. .. .++. ...++++|++|++++|.+++. ++|++|++++|.+++. .-...+.+++
T Consensus 142 ~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~ 220 (592)
T 3ogk_B 142 TLKLDKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220 (592)
T ss_dssp EEEEESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred EEECcCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence 999999873 21 1222 445899999999999986432 8999999999988621 1112246789
Q ss_pred CCcEEEccCCcccccccccccCCCCCCcccEEEecCCCCCC---CccChhccCCCCCCEEEccCCcCcccCChhHhhcCC
Q 005168 129 RLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDG---VTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNT 205 (710)
Q Consensus 129 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~ 205 (710)
+|+.|++++|.+.... . .+...++|++|++ +.+... ...+..+..+++|+.++++++.. ..+|..+ ..++
T Consensus 221 ~L~~L~L~~~~~~~l~-~---~~~~~~~L~~L~l-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~-~~~~ 293 (592)
T 3ogk_B 221 SLVSVKVGDFEILELV-G---FFKAAANLEEFCG-GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILF-PFAA 293 (592)
T ss_dssp TCCEEECSSCBGGGGH-H---HHHHCTTCCEEEE-CBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGG-GGGG
T ss_pred CCcEEeccCccHHHHH-H---HHhhhhHHHhhcc-cccccccchHHHHHHhhccccccccCccccch-hHHHHHH-hhcC
Confidence 9999999998876533 1 1344568999999 433222 23445667788999999987532 3455544 7889
Q ss_pred CCcEEEccCCcccccCc-cCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccC-----------CcCcccC-Cc
Q 005168 206 KLATLFLVNDSLAGPFW-LPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISM-----------NALDGSI-PS 272 (710)
Q Consensus 206 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~-----------n~i~~~~-~~ 272 (710)
+|++|++++|.+.+... ..+..+++|++|+++ +.+.......+...+++|++|++++ +.+++.. +.
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 99999999998765333 336789999999999 4444333344445588999999994 5565432 22
Q ss_pred cCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccC-----cCccccCCCccceeeCcc
Q 005168 273 SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGN-----IPGWLGNLTWLIHIIMPE 347 (710)
Q Consensus 273 ~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~ 347 (710)
.+.++++|++|+++.|.+++..+..+...+++|++|+++++. ..|.+++. ++..+.++++|+.|+++.
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~-------~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD-------REERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS-------CCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC-------CCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 245689999999999988866666666569999999997433 12333332 233467799999999975
Q ss_pred Cc--cccccchhhc-CCCCCCEEECCCCcCcccC-CCC-CCCCCcceEEccCccccccccccCCCccCcccCChhhhcCC
Q 005168 348 NH--LEGPIPVEFC-QLYSLQILDISDNNISGSL-PSC-FHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELS 422 (710)
Q Consensus 348 n~--l~~~~~~~~~-~l~~L~~L~ls~n~i~~~~-~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~ 422 (710)
|. +++.....+. .+++|++|++++|.+++.. +.. ..+++|++|++++|.++.. .++.....++
T Consensus 446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~------------~~~~~~~~l~ 513 (592)
T 3ogk_B 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER------------AIAAAVTKLP 513 (592)
T ss_dssp CGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH------------HHHHHHHHCS
T ss_pred CCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH------------HHHHHHHhcC
Confidence 43 5555444444 4889999999999987521 111 1256777777766665421 1233344567
Q ss_pred CccEEecCCCcccccCCccc-CCCCCCCEEEccC
Q 005168 423 QLSHLILGHNNLEGEVPVQL-CELNQLQLLDLSN 455 (710)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~ 455 (710)
+|++|++++|+++..-...+ ..++.+....+..
T Consensus 514 ~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 514 SLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp SCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred ccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 77777777777664322222 2455555544443
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.5e-25 Score=222.66 Aligned_cols=191 Identities=21% Similarity=0.238 Sum_probs=131.3
Q ss_pred cccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcc
Q 005168 333 WLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNG 412 (710)
Q Consensus 333 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~ 412 (710)
.|.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------------------------------- 93 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL--------------------------------- 93 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT---------------------------------
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh---------------------------------
Confidence 44455555555555555554444555555556666655555543322
Q ss_pred cCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCccccc-CCCCcccccccccccCCCCCccccccceee
Q 005168 413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGS-IPPCFDNTTLYESYNNSSSLDEKFEISFFI 491 (710)
Q Consensus 413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (710)
..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..
T Consensus 94 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~----------------------- 147 (276)
T 2z62_A 94 ---GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----------------------- 147 (276)
T ss_dssp ---TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------
T ss_pred ---hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------
Confidence 3344456666666666666655555566667777777777766543 3555544
Q ss_pred cCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCC----EEeCCCccCCCCCchhhcCCccCCEEe
Q 005168 492 EGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQ----TLNLSYNNLTGLIPSTFSNLKHIESLD 567 (710)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 567 (710)
+++|+.|++++|++++..+..|..+++|+ .|++++|.++++.+..+... +|++|+
T Consensus 148 --------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~-~L~~L~ 206 (276)
T 2z62_A 148 --------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELA 206 (276)
T ss_dssp --------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSC-CEEEEE
T ss_pred --------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCC-cccEEE
Confidence 33677777777777766666777777776 89999999998887777654 899999
Q ss_pred CcCCcCcccCCcccccCCCCCEEeccCCccccccCC
Q 005168 568 LSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILE 603 (710)
Q Consensus 568 Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 603 (710)
+++|++++..++.+..+++|+.|++++|++.|.|+.
T Consensus 207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred CCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 999999987777789999999999999999999974
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=7.2e-27 Score=240.06 Aligned_cols=132 Identities=23% Similarity=0.213 Sum_probs=75.5
Q ss_pred CCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcc-cCCccCc-------CCCCCCEEeccCCccCCcCChhh
Q 005168 227 SHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDG-SIPSSFG-------NMKFLQLLDLSNNQLTGEIPEHL 298 (710)
Q Consensus 227 ~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~f~-------~l~~L~~L~Ls~n~l~~~i~~~~ 298 (710)
..++|+.|++++|.+ .+|..++. .|+.|++++|.+.. ..|..+. ++++|++|++++|.+++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 344566666666666 55665554 26666666666632 2333332 46666666666666665566554
Q ss_pred h-cCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCC-----CccceeeCccCccccccchhhcCCCCCCEEECCCC
Q 005168 299 A-VGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNL-----TWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDN 372 (710)
Q Consensus 299 ~-~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 372 (710)
| .++++|++|++++|.+.. . |..+..+ ++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~-----------~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWAT-----------R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSS-----------S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred HHhcCCCccEEEccCCCCcc-----------h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence 3 456666666665555543 2 4444444 55666666666666555556666666666666666
Q ss_pred cCc
Q 005168 373 NIS 375 (710)
Q Consensus 373 ~i~ 375 (710)
++.
T Consensus 184 ~l~ 186 (312)
T 1wwl_A 184 PEL 186 (312)
T ss_dssp TTC
T ss_pred CcC
Confidence 543
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.7e-26 Score=249.02 Aligned_cols=158 Identities=20% Similarity=0.167 Sum_probs=97.8
Q ss_pred CCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeec
Q 005168 422 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTK 501 (710)
Q Consensus 422 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (710)
++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~--------------------------------- 166 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA--------------------------------- 166 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG---------------------------------
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh---------------------------------
Confidence 44555555555555555555555555555555555555544443320
Q ss_pred cccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccc
Q 005168 502 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL 581 (710)
Q Consensus 502 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l 581 (710)
.+++|+.|+|++|.+++..+ +..+++|+.|+|++|.++++++. |..+++|+.|++++|++++ +|..+
T Consensus 167 ---------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l 233 (487)
T 3oja_A 167 ---------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKAL 233 (487)
T ss_dssp ---------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTC
T ss_pred ---------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhh
Confidence 02356666666666654422 23477888888888888876655 7778888888888888884 56667
Q ss_pred ccCCCCCEEeccCCcccccc-CCCccccccCCccccc-------CCCCCCCC
Q 005168 582 VELKTLEVFSVAYNNLSGEI-LEWTAQFATFNKSSYE-------GNTFLCGL 625 (710)
Q Consensus 582 ~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~~~~~~~~-------~n~~~c~~ 625 (710)
..+++|+.|++++|++.|.+ |.++..+..+..+... ++++.|.+
T Consensus 234 ~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~ 285 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285 (487)
T ss_dssp CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSS
T ss_pred ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccC
Confidence 77888888888888888543 4444444444444433 67777654
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=5.4e-24 Score=236.44 Aligned_cols=174 Identities=25% Similarity=0.272 Sum_probs=138.0
Q ss_pred CCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEE
Q 005168 180 HDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVF 259 (710)
Q Consensus 180 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L 259 (710)
.+++.|+++++.++ .+|..+. ++|+.|++++|.+....+ .+++|++|++++|.++ .+|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC----CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC----CCCCCCEE
Confidence 46999999999998 6776652 899999999999986433 5789999999999998 7887 37899999
Q ss_pred EccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCc
Q 005168 260 NISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTW 339 (710)
Q Consensus 260 ~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~ 339 (710)
++++|.++++. . .+++|+.|++++|.++ .+|. .+++|++|++++|.+.. +|. .+++
T Consensus 107 ~Ls~N~l~~l~-~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~------------l~~---~~~~ 162 (622)
T 3g06_A 107 SIFSNPLTHLP-A---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS------------LPA---LPSE 162 (622)
T ss_dssp EECSCCCCCCC-C---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC------------CCC---CCTT
T ss_pred ECcCCcCCCCC-C---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCC------------cCC---ccCC
Confidence 99999999653 3 5789999999999998 7876 35899999999988764 232 3578
Q ss_pred cceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccc
Q 005168 340 LIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNML 397 (710)
Q Consensus 340 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l 397 (710)
|+.|++++|.++.+ | ..+++|+.|++++|.+++++.. +.+|+.|++++|.+
T Consensus 163 L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l 213 (622)
T 3g06_A 163 LCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRL 213 (622)
T ss_dssp CCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC
T ss_pred CCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcc
Confidence 99999999999964 4 4578999999999998864331 24445554444443
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=1.9e-27 Score=267.88 Aligned_cols=385 Identities=14% Similarity=0.043 Sum_probs=179.0
Q ss_pred CCCCCcEEEccCCcccccccccccCCCCCCcccEEEecCCCC-CCC-ccChhccCCCCCCEEEccCCcCcccCChh---H
Q 005168 126 NHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYG-DGV-TFPKFLYHQHDLEYVRLSHIKMNGEFPNW---L 200 (710)
Q Consensus 126 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~---~ 200 (710)
.+++|++|++++|.+.......+....+ .+|++|++ .+|. ... .++.....+++|++|++++|.+++....+ +
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~-~~L~~L~L-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARA-DDLETLKL-DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHG-GGCCEEEE-ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhcc-ccCcEEEC-cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 4566666666666544333222111110 13666666 3332 111 01111224555666666665554432221 2
Q ss_pred hhcCCCCcEEEccCCcccc----cCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCc---ccCCcc
Q 005168 201 LENNTKLATLFLVNDSLAG----PFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALD---GSIPSS 273 (710)
Q Consensus 201 ~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~---~~~~~~ 273 (710)
...+++|++|++++|.+.+ ..+..+..+++|++|++++|.+. .+|..+.. +++|++|+++..... ...+..
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKA-AANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHH-CTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhh-hhHHHhhcccccccccchHHHHHH
Confidence 2455566666665555542 12222344555566666555555 34433332 555555555532211 112233
Q ss_pred CcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccc
Q 005168 274 FGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP 353 (710)
Q Consensus 274 f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 353 (710)
+..+++|+.|+++++... .+|.. +..+++|++|++++|.+... .....+..+++|++|+++++.....
T Consensus 266 l~~~~~L~~L~l~~~~~~-~l~~~-~~~~~~L~~L~Ls~~~l~~~----------~~~~~~~~~~~L~~L~L~~~~~~~~ 333 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPN-EMPIL-FPFAAQIRKLDLLYALLETE----------DHCTLIQKCPNLEVLETRNVIGDRG 333 (592)
T ss_dssp CCCCTTCCEEEETTCCTT-TGGGG-GGGGGGCCEEEETTCCCCHH----------HHHHHHTTCTTCCEEEEEGGGHHHH
T ss_pred hhccccccccCccccchh-HHHHH-HhhcCCCcEEecCCCcCCHH----------HHHHHHHhCcCCCEEeccCccCHHH
Confidence 444555555555554322 33322 22455555555555543210 0112234455555555552211111
Q ss_pred cchhhcCCCCCCEEECCC-----------CcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCC
Q 005168 354 IPVEFCQLYSLQILDISD-----------NNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELS 422 (710)
Q Consensus 354 ~~~~~~~l~~L~~L~ls~-----------n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~ 422 (710)
.+..+..+++|++|++++ +.++.. .++.....++
T Consensus 334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-----------------------------------~~~~l~~~~~ 378 (592)
T 3ogk_B 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR-----------------------------------GLIALAQGCQ 378 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-----------------------------------HHHHHHHHCT
T ss_pred HHHHHHhCCCCCEEEeecCccccccccccCccCHH-----------------------------------HHHHHHhhCc
Confidence 222233445555555552 122211 0112233456
Q ss_pred CccEEecCCCcccccCCcccCC-CCCCCEEEcc----CCcccccCCC-CcccccccccccCCCCCccccccceeecCCCc
Q 005168 423 QLSHLILGHNNLEGEVPVQLCE-LNQLQLLDLS----NNSLHGSIPP-CFDNTTLYESYNNSSSLDEKFEISFFIEGPQG 496 (710)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (710)
+|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.+.+ .+..
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~---------------------------- 430 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS---------------------------- 430 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH----------------------------
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH----------------------------
Confidence 6777766666665544444433 6667777765 3344321110 0000
Q ss_pred ceeeccccceecccccccccEEECcCCc--CCCCCCcccc-ccCCCCEEeCCCccCCCC-CchhhcCCccCCEEeCcCCc
Q 005168 497 DFTTKNIAYIYQGKVLSLLSGLYLSCNK--LIGHIPPQIG-NLTRIQTLNLSYNNLTGL-IPSTFSNLKHIESLDLSYNK 572 (710)
Q Consensus 497 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~ 572 (710)
. ...+++|+.|++++|. +++.....+. .+++|++|+|++|.+++. .+..+.++++|++|+|++|+
T Consensus 431 ---------~--~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 431 ---------L--LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp ---------H--HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred ---------H--HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 0 0114467777775433 4433333332 366777777777777652 23345666777777777777
Q ss_pred Cccc-CCcccccCCCCCEEeccCCccccc
Q 005168 573 LNGK-IPHQLVELKTLEVFSVAYNNLSGE 600 (710)
Q Consensus 573 i~~~-~~~~l~~l~~L~~L~l~~N~l~~~ 600 (710)
++.. ++.....+++|+.|++++|+++..
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 6532 333345567777777777776643
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=7.3e-26 Score=246.66 Aligned_cols=244 Identities=19% Similarity=0.161 Sum_probs=164.4
Q ss_pred CccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccc
Q 005168 255 SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWL 334 (710)
Q Consensus 255 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~ 334 (710)
+|++|+|++|.+.+..|.+|.++++|++|+|++|.+++..| +.++++|++|++++|.+.. +
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~----------------l 95 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE----------------L 95 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEE----------------E
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCC----------------C
Confidence 56666666666665555566666666666666666653222 3455566666555555432 1
Q ss_pred cCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccC
Q 005168 335 GNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSI 414 (710)
Q Consensus 335 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~ 414 (710)
...++|++|++++|.+.+..+. .+++|+.|++++|.+.+ ..
T Consensus 96 ~~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~------------------------------------~~ 136 (487)
T 3oja_A 96 LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM------------------------------------LR 136 (487)
T ss_dssp EECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCS------------------------------------GG
T ss_pred CCCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCC------------------------------------CC
Confidence 1124455555555544443332 12344444444444432 33
Q ss_pred ChhhhcCCCccEEecCCCcccccCCcccC-CCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecC
Q 005168 415 PDWIGELSQLSHLILGHNNLEGEVPVQLC-ELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEG 493 (710)
Q Consensus 415 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (710)
|..++.+++|++|++++|.+++..|..+. .+++|+.|+|++|.+++..+..+
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~--------------------------- 189 (487)
T 3oja_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--------------------------- 189 (487)
T ss_dssp GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC---------------------------
T ss_pred chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc---------------------------
Confidence 44566678888888888888877777765 68888899998888876533221
Q ss_pred CCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcC
Q 005168 494 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 573 (710)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i 573 (710)
+++|+.|+|++|.+++..| .|..+++|+.|+|++|.++++ |..+..+++|+.|++++|++
T Consensus 190 ------------------l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 190 ------------------FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp ------------------CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCB
T ss_pred ------------------CCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCC
Confidence 4588999999999986555 488899999999999999975 55688899999999999999
Q ss_pred c-ccCCcccccCCCCCEEecc-------CCccccccCC
Q 005168 574 N-GKIPHQLVELKTLEVFSVA-------YNNLSGEILE 603 (710)
Q Consensus 574 ~-~~~~~~l~~l~~L~~L~l~-------~N~l~~~~~~ 603 (710)
. +.+|..+..++.|+.++++ .|+..|.++.
T Consensus 250 ~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp CHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred cCcchHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 8 5667778888888888886 7788777654
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.6e-26 Score=237.46 Aligned_cols=201 Identities=22% Similarity=0.280 Sum_probs=118.0
Q ss_pred CCccceeeCccCccccccchhh--cCCCCCCEEECCCCcCcccCCCCCC-C-----CCcceEEccCccccccccccCCCc
Q 005168 337 LTWLIHIIMPENHLEGPIPVEF--CQLYSLQILDISDNNISGSLPSCFH-P-----LSIEQVHLSKNMLHRQLKRDLSYN 408 (710)
Q Consensus 337 l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~ls~n~i~~~~~~~~~-~-----~~L~~L~l~~n~l~~~~~~~l~~n 408 (710)
+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+. +..+. + ++|++|++++|.+.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~--------- 163 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN--------- 163 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC---------
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc---------
Confidence 4444444444444444444433 4444444444444444443 22222 1 444444443333321
Q ss_pred cCcccCChhhhcCCCccEEecCCCccccc--CCccc--CCCCCCCEEEccCCcccccC--C-CCcccccccccccCCCCC
Q 005168 409 LLNGSIPDWIGELSQLSHLILGHNNLEGE--VPVQL--CELNQLQLLDLSNNSLHGSI--P-PCFDNTTLYESYNNSSSL 481 (710)
Q Consensus 409 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~n~l~~~~--~-~~~~~~~~~~~~~~~~~~ 481 (710)
..|..++.+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++.. + ..+.
T Consensus 164 ----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-------------- 225 (312)
T 1wwl_A 164 ----FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA-------------- 225 (312)
T ss_dssp ----CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH--------------
T ss_pred ----chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh--------------
Confidence 3345556667777777777776543 12223 66777777777777765211 1 1111
Q ss_pred ccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCC-ccccccCCCCEEeCCCccCCCCCchhhcCC
Q 005168 482 DEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIP-PQIGNLTRIQTLNLSYNNLTGLIPSTFSNL 560 (710)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 560 (710)
.+++|+.|++++|.+++..| ..+..+++|++|+|++|.++.+ |..+.
T Consensus 226 -----------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~-- 273 (312)
T 1wwl_A 226 -----------------------------ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP-- 273 (312)
T ss_dssp -----------------------------TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC--
T ss_pred -----------------------------cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc--
Confidence 13477778888887776664 4466678888888888888855 33343
Q ss_pred ccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCcccc
Q 005168 561 KHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSG 599 (710)
Q Consensus 561 ~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~ 599 (710)
++|++|++++|+|++. |. +..+++|+.|++++|++++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7788888888888855 55 7778888888888888765
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.2e-23 Score=211.33 Aligned_cols=142 Identities=25% Similarity=0.286 Sum_probs=111.0
Q ss_pred hcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcce
Q 005168 419 GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDF 498 (710)
Q Consensus 419 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (710)
..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------ 131 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------------ 131 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT------------------------------
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc------------------------------
Confidence 34555666666666666555555666667777777777666655555544
Q ss_pred eeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC
Q 005168 499 TTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 578 (710)
Q Consensus 499 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~ 578 (710)
+++|+.|++++|.+++..+..|..+++|++|+|++|.++++.+..|..+++|++|++++|++++..+
T Consensus 132 -------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 132 -------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp -------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred -------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 3367777777777776666778889999999999999999988899999999999999999998777
Q ss_pred cccccCCCCCEEeccCCccccccCC
Q 005168 579 HQLVELKTLEVFSVAYNNLSGEILE 603 (710)
Q Consensus 579 ~~l~~l~~L~~L~l~~N~l~~~~~~ 603 (710)
..+..+++|+.|++++|+|.|.|..
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred HHhccccCCCEEEecCCCeeCCCcc
Confidence 7889999999999999999999864
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=7.5e-24 Score=214.55 Aligned_cols=181 Identities=24% Similarity=0.246 Sum_probs=135.0
Q ss_pred ccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhh
Q 005168 339 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWI 418 (710)
Q Consensus 339 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~ 418 (710)
.++.|++++|.+.+..+..|..+++|++|++++|.++++.+.
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------------------------------- 73 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-------------------------------------- 73 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--------------------------------------
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--------------------------------------
Confidence 444455555555545555566666666666666666533221
Q ss_pred hcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcce
Q 005168 419 GELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDF 498 (710)
Q Consensus 419 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (710)
..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l----------------------------- 123 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL----------------------------- 123 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC-----------------------------
T ss_pred CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCC-----------------------------
Confidence 23456667777777666 445566677777777777777776666666553
Q ss_pred eeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC
Q 005168 499 TTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP 578 (710)
Q Consensus 499 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~ 578 (710)
++|+.|+|++|++++..+..|..+++|+.|+|++|+++++++..|..+++|+.|+|++|+++ .+|
T Consensus 124 --------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip 188 (290)
T 1p9a_G 124 --------------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188 (290)
T ss_dssp --------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred --------------CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence 37788888888888777778889999999999999999999889999999999999999999 677
Q ss_pred cccccCCCCCEEeccCCccccccC
Q 005168 579 HQLVELKTLEVFSVAYNNLSGEIL 602 (710)
Q Consensus 579 ~~l~~l~~L~~L~l~~N~l~~~~~ 602 (710)
..+...++|+.+++++|||.|.|.
T Consensus 189 ~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp TTTTTTCCCSEEECCSCCBCCSGG
T ss_pred hhhcccccCCeEEeCCCCccCcCc
Confidence 778888999999999999999873
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.5e-23 Score=211.41 Aligned_cols=228 Identities=26% Similarity=0.284 Sum_probs=132.9
Q ss_pred EEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCC
Q 005168 234 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNN 313 (710)
Q Consensus 234 L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n 313 (710)
++-.+..++ .+|..+. +++++|++++|.++++.+..|.++++|++|++++|.++ .++...+.++++|++|++++|
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence 444445555 5565442 36777777777776666656666777777777777666 555555555555555555555
Q ss_pred CCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEcc
Q 005168 314 SLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLS 393 (710)
Q Consensus 314 ~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~ 393 (710)
.+. +..+..|.++++|++|++++|.+.+..+.
T Consensus 87 ~l~-----------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------- 118 (276)
T 2z62_A 87 PIQ-----------------------------------SLALGAFSGLSSLQKLVAVETNLASLENF------------- 118 (276)
T ss_dssp CCC-----------------------------------EECTTTTTTCTTCCEEECTTSCCCCSTTC-------------
T ss_pred ccC-----------------------------------ccChhhhcCCccccEEECCCCCccccCch-------------
Confidence 443 33334444455555555555544432221
Q ss_pred CccccccccccCCCccCcccCChhhhcCCCccEEecCCCccccc-CCcccCCCCCCCEEEccCCcccccCCCCccccccc
Q 005168 394 KNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGE-VPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLY 472 (710)
Q Consensus 394 ~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 472 (710)
.+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++..+..+..+.
T Consensus 119 -----------------------~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-- 173 (276)
T 2z62_A 119 -----------------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-- 173 (276)
T ss_dssp -----------------------CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH--
T ss_pred -----------------------hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh--
Confidence 122334445555555554432 244555555666666666655544444443321
Q ss_pred ccccCCCCCccccccceeecCCCcceeeccccceeccccccccc-EEECcCCcCCCCCCccccccCCCCEEeCCCccCCC
Q 005168 473 ESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLS-GLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTG 551 (710)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 551 (710)
.++.+. .|++++|.+++..+..+.. .+|++|+|++|.+++
T Consensus 174 --------------------------------------~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 174 --------------------------------------QMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKS 214 (276)
T ss_dssp --------------------------------------TCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSC
T ss_pred --------------------------------------hccccceeeecCCCcccccCccccCC-CcccEEECCCCceee
Confidence 011222 6677777776555555544 478899999999998
Q ss_pred CCchhhcCCccCCEEeCcCCcCcccCC
Q 005168 552 LIPSTFSNLKHIESLDLSYNKLNGKIP 578 (710)
Q Consensus 552 ~~~~~~~~l~~L~~L~Ls~N~i~~~~~ 578 (710)
+++..|..+++|++|++++|++.+..|
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cCHhHhcccccccEEEccCCcccccCC
Confidence 888888889999999999999986443
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=4.9e-23 Score=206.78 Aligned_cols=171 Identities=24% Similarity=0.272 Sum_probs=154.4
Q ss_pred cCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeec
Q 005168 413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE 492 (710)
Q Consensus 413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (710)
..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..
T Consensus 52 ~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------ 107 (270)
T 2o6q_A 52 LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ------------------------ 107 (270)
T ss_dssp CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT------------------------
T ss_pred eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc------------------------
Confidence 33446777899999999999999777778899999999999999999777777765
Q ss_pred CCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCc
Q 005168 493 GPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK 572 (710)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 572 (710)
+++|+.|++++|.+++..+..|..+++|++|+|++|.++++.+..|..+++|++|++++|+
T Consensus 108 -------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 168 (270)
T 2o6q_A 108 -------------------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ 168 (270)
T ss_dssp -------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence 3489999999999999888899999999999999999999998899999999999999999
Q ss_pred CcccCCcccccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168 573 LNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 626 (710)
Q Consensus 573 i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 626 (710)
+++..+..|..+++|+.|++++|++....+..+..+..++.+.+.+|||.|+|+
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 998888889999999999999999998777767888899999999999999975
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=2.9e-26 Score=258.32 Aligned_cols=178 Identities=15% Similarity=0.175 Sum_probs=81.9
Q ss_pred CCCCCCEEEccCCcCcccCChhH---hhcCCCCcEEEccCCc--cccc-CccCccCCCCCCEEEcccC-cCcccCChhhh
Q 005168 178 HQHDLEYVRLSHIKMNGEFPNWL---LENNTKLATLFLVNDS--LAGP-FWLPIHSHKRLGILDISNN-NIRGHIPVEIG 250 (710)
Q Consensus 178 ~~~~L~~L~ls~~~~~~~~~~~~---~~~l~~L~~L~l~~~~--~~~~-~~~~~~~~~~L~~L~ls~n-~i~~~~~~~~~ 250 (710)
.+++|++|++++|.+++..+..+ ...+++|++|++++|. +... .......+++|++|++++| .+. .+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHh
Confidence 45556666666555444332222 1244556666665554 1100 0111223456666666655 232 2333333
Q ss_pred hcCCCccEEEccCCc-------CcccCCccCcCCCCCCEE-eccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeecc
Q 005168 251 DVLPSLYVFNISMNA-------LDGSIPSSFGNMKFLQLL-DLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLT 322 (710)
Q Consensus 251 ~~~~~L~~L~L~~n~-------i~~~~~~~f~~l~~L~~L-~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~ 322 (710)
. +++|++|++..+. +.+ .+..+.++++|+.| .+.+.... .++... ..+++|++|++++|.+...
T Consensus 233 ~-~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~-~~~~~L~~L~L~~~~l~~~---- 304 (594)
T 2p1m_B 233 R-APQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-YLPAVY-SVCSRLTTLNLSYATVQSY---- 304 (594)
T ss_dssp H-CTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-GGGGGH-HHHTTCCEEECTTCCCCHH----
T ss_pred c-CCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh-hHHHHH-HhhCCCCEEEccCCCCCHH----
Confidence 2 5566666644332 222 22245566666666 33332221 233222 2456666666666654320
Q ss_pred CccCccCcCccccCCCccceeeCccCccccc-cchhhcCCCCCCEEECCC
Q 005168 323 NNSLSGNIPGWLGNLTWLIHIIMPENHLEGP-IPVEFCQLYSLQILDISD 371 (710)
Q Consensus 323 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ls~ 371 (710)
.....+..+++|++|++++| +... .+.....+++|++|++++
T Consensus 305 ------~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 305 ------DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp ------HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ------HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEec
Confidence 11222445666777777666 3322 122223466677776643
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=3.5e-26 Score=257.64 Aligned_cols=413 Identities=12% Similarity=0.073 Sum_probs=259.2
Q ss_pred ccCCCCCcEEEccCCccccccccc-----------c-cCCCCCCcccEEEecCCCCCCCccChhcc-CCCCCCEEEccCC
Q 005168 124 LFNHSRLKIFHAKNNQMNAEITES-----------H-SLTAPNFQLQSLSLSSSYGDGVTFPKFLY-HQHDLEYVRLSHI 190 (710)
Q Consensus 124 l~~l~~L~~L~L~~n~~~~~~~~~-----------~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~ls~~ 190 (710)
+..+++|+.|+++++......... + ......++|++|++ .++.+.+..+..+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L-~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRL-KRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEE-ESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEe-eCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 455677777777776432111000 0 00112347888888 56666555555554 5788999999888
Q ss_pred -cCcccCChhHhhcCCCCcEEEccCCcccccCccC----ccCCCCCCEEEcccCcCcccCCh----hhhhcCCCccEEEc
Q 005168 191 -KMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLP----IHSHKRLGILDISNNNIRGHIPV----EIGDVLPSLYVFNI 261 (710)
Q Consensus 191 -~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~ls~n~i~~~~~~----~~~~~~~~L~~L~L 261 (710)
.++......+..++++|++|++++|.+.+..+.. ...+++|++|++++|. . .++. .+...+++|++|++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCTTCCEEEC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCCCCcEEec
Confidence 4544333344467889999999888876644333 3367789999998886 2 3332 22233688999999
Q ss_pred cCC-cCcccCCccCcCCCCCCEEeccCCc-------cCCcCChhhhcCCCCCcEE-EccCCCCcCeeeccCccCccCcCc
Q 005168 262 SMN-ALDGSIPSSFGNMKFLQLLDLSNNQ-------LTGEIPEHLAVGCVNLQFL-MLSNNSLKEGLYLTNNSLSGNIPG 332 (710)
Q Consensus 262 ~~n-~i~~~~~~~f~~l~~L~~L~Ls~n~-------l~~~i~~~~~~~l~~L~~L-~Ls~n~l~~~l~l~~n~l~~~~~~ 332 (710)
++| .+.+ .+..+..+++|+.|+++.+. +. .++. .+.++++|+.| .+..... +.++.
T Consensus 219 ~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~~------------~~l~~ 283 (594)
T 2p1m_B 219 NRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV-ALSGCKELRCLSGFWDAVP------------AYLPA 283 (594)
T ss_dssp CTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH-HHHTCTTCCEEECCBTCCG------------GGGGG
T ss_pred CCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHH-HHHH-HHhcCCCcccccCCcccch------------hhHHH
Confidence 888 3443 56667788888888865443 33 3333 34578888887 3332211 12444
Q ss_pred cccCCCccceeeCccCcccccc-chhhcCCCCCCEEECCCCcCcccC-CCCC-CCCCcceEEccCccccccccccCCCcc
Q 005168 333 WLGNLTWLIHIIMPENHLEGPI-PVEFCQLYSLQILDISDNNISGSL-PSCF-HPLSIEQVHLSKNMLHRQLKRDLSYNL 409 (710)
Q Consensus 333 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ls~n~i~~~~-~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~n~ 409 (710)
.+..+++|++|++++|.+++.. ...+..+++|++|++++| +.... +... .+++|++|+++++.-.+ ..+.+.
T Consensus 284 ~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g----~~~~~~ 358 (594)
T 2p1m_B 284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV----MEPNVA 358 (594)
T ss_dssp GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC----SSCSSC
T ss_pred HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc----cccCCC
Confidence 4557889999999999876443 233568899999999988 43211 1111 26789999885542110 112222
Q ss_pred CcccCChhh-hcCCCccEEecCCCcccccCCcccC-CCCCCCEEEcc--C----CcccccCCC-CcccccccccccCCCC
Q 005168 410 LNGSIPDWI-GELSQLSHLILGHNNLEGEVPVQLC-ELNQLQLLDLS--N----NSLHGSIPP-CFDNTTLYESYNNSSS 480 (710)
Q Consensus 410 ~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~~~~-~~~~~~~~~~~~~~~~ 480 (710)
+++.....+ ..+++|+.|.++.|.+++.....+. .+++|+.|+++ + +.+++...+ .+..
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~------------ 426 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA------------ 426 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH------------
T ss_pred CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH------------
Confidence 322222223 3478999999888888765544454 58899999998 3 333311100 0000
Q ss_pred CccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccc-cCCCCEEeCCCccCCCCCchhh-c
Q 005168 481 LDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGN-LTRIQTLNLSYNNLTGLIPSTF-S 558 (710)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~ 558 (710)
....+++|+.|++++ .+++.....+.. +++|+.|+|++|.+++.....+ .
T Consensus 427 ---------------------------l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~ 478 (594)
T 2p1m_B 427 ---------------------------IVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS 478 (594)
T ss_dssp ---------------------------HHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHH
T ss_pred ---------------------------HHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHh
Confidence 012356899999977 666544445554 7899999999999876555444 6
Q ss_pred CCccCCEEeCcCCcCcccCCc-ccccCCCCCEEeccCCcccc
Q 005168 559 NLKHIESLDLSYNKLNGKIPH-QLVELKTLEVFSVAYNNLSG 599 (710)
Q Consensus 559 ~l~~L~~L~Ls~N~i~~~~~~-~l~~l~~L~~L~l~~N~l~~ 599 (710)
++++|++|+|++|+++..... ....+++|+.|++++|+++.
T Consensus 479 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 689999999999998643333 34558899999999998854
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=6.6e-23 Score=207.62 Aligned_cols=206 Identities=25% Similarity=0.258 Sum_probs=163.0
Q ss_pred cCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccC
Q 005168 359 CQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEV 438 (710)
Q Consensus 359 ~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 438 (710)
..++++++++++++.++.+++.. +..++.|++++|.+++ ..+..|..+++|++|++++|.+++..
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~L~~n~l~~~~ 71 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYT-------------FSLATLMPYTRLTQLNLDRAELTKLQ 71 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSE-------------EEGGGGTTCTTCCEEECTTSCCCEEE
T ss_pred cccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCc-------------cCHHHhhcCCCCCEEECCCCccCccc
Confidence 33444445555554444433322 1344555444443332 44566788899999999999998654
Q ss_pred CcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEE
Q 005168 439 PVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGL 518 (710)
Q Consensus 439 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 518 (710)
+. ..+++|++|++++|.+. .+|..+.. +++|+.|
T Consensus 72 ~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~-------------------------------------------l~~L~~L 105 (290)
T 1p9a_G 72 VD--GTLPVLGTLDLSHNQLQ-SLPLLGQT-------------------------------------------LPALTVL 105 (290)
T ss_dssp CC--SCCTTCCEEECCSSCCS-SCCCCTTT-------------------------------------------CTTCCEE
T ss_pred CC--CCCCcCCEEECCCCcCC-cCchhhcc-------------------------------------------CCCCCEE
Confidence 43 78999999999999997 45555544 4589999
Q ss_pred ECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccc
Q 005168 519 YLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598 (710)
Q Consensus 519 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~ 598 (710)
++++|++++..+..|.++++|++|+|++|++++++++.|..+++|+.|+|++|+++...+..+..+++|+.|++++|++.
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 99999999888899999999999999999999999999999999999999999999777778899999999999999999
Q ss_pred cccCCCccccccCCcccccCCCCCCCCC
Q 005168 599 GEILEWTAQFATFNKSSYEGNTFLCGLP 626 (710)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 626 (710)
.+|.++.....+..+.+.+|||.|+|.
T Consensus 186 -~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 186 -TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp -CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred -ccChhhcccccCCeEEeCCCCccCcCc
Confidence 456666677788899999999999974
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.2e-22 Score=198.55 Aligned_cols=146 Identities=26% Similarity=0.312 Sum_probs=131.8
Q ss_pred cCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeec
Q 005168 413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE 492 (710)
Q Consensus 413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (710)
..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..
T Consensus 50 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------------------ 105 (251)
T 3m19_A 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH------------------------ 105 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT------------------------
T ss_pred cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcc------------------------
Confidence 44456777889999999999999888888999999999999999999777777765
Q ss_pred CCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCc
Q 005168 493 GPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK 572 (710)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 572 (710)
+++|+.|+|++|.+++..+..|..+++|++|+|++|+++++.+..|..+++|++|+|++|+
T Consensus 106 -------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 106 -------------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp -------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 3489999999999998888889999999999999999999999899999999999999999
Q ss_pred CcccCCcccccCCCCCEEeccCCcccccc
Q 005168 573 LNGKIPHQLVELKTLEVFSVAYNNLSGEI 601 (710)
Q Consensus 573 i~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 601 (710)
+++..+..+..+++|+.|++++|++.|.+
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred CCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 99888889999999999999999999983
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2.7e-22 Score=201.52 Aligned_cols=141 Identities=25% Similarity=0.288 Sum_probs=98.7
Q ss_pred hhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcc
Q 005168 418 IGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGD 497 (710)
Q Consensus 418 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (710)
+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------------------------- 155 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK----------------------------- 155 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------
T ss_pred hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc-----------------------------
Confidence 344555666666666665555555666666666666666666555544444
Q ss_pred eeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccC
Q 005168 498 FTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKI 577 (710)
Q Consensus 498 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~ 577 (710)
+++|+.|++++|.+++..+..|..+++|++|++++|.++++.+..|..+++|+.|++++|++.+.
T Consensus 156 --------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~- 220 (272)
T 3rfs_A 156 --------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT- 220 (272)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-
T ss_pred --------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-
Confidence 23666777777777766666677888888888888888888888888888888888888887754
Q ss_pred CcccccCCCCCEEeccCCccccccCCCcccc
Q 005168 578 PHQLVELKTLEVFSVAYNNLSGEILEWTAQF 608 (710)
Q Consensus 578 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 608 (710)
++.|+.+++..|.+++.+|.++..+
T Consensus 221 ------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 221 ------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp ------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred ------CcHHHHHHHHHHhCCCcccCccccc
Confidence 3467888888888888888765543
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=7.5e-22 Score=198.29 Aligned_cols=144 Identities=27% Similarity=0.285 Sum_probs=133.0
Q ss_pred hhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCc
Q 005168 417 WIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQG 496 (710)
Q Consensus 417 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (710)
.+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+
T Consensus 80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--------------------------- 132 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL--------------------------- 132 (272)
T ss_dssp GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC---------------------------
T ss_pred hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccC---------------------------
Confidence 46678899999999999998888889999999999999999998877777664
Q ss_pred ceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCccc
Q 005168 497 DFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 576 (710)
Q Consensus 497 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~ 576 (710)
++|+.|++++|.+++..+..|..+++|++|++++|+++++.+..|..+++|++|++++|++++.
T Consensus 133 ----------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 133 ----------------TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp ----------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ----------------CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 4899999999999988888899999999999999999999999999999999999999999988
Q ss_pred CCcccccCCCCCEEeccCCccccccCC
Q 005168 577 IPHQLVELKTLEVFSVAYNNLSGEILE 603 (710)
Q Consensus 577 ~~~~l~~l~~L~~L~l~~N~l~~~~~~ 603 (710)
.+..+..+++|+.|++++|++.|.+|.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CHHHHhCCcCCCEEEccCCCccccCcH
Confidence 888899999999999999999999875
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.2e-21 Score=193.00 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=39.5
Q ss_pred CcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCc-cCCcCChhhhcCCCCCcEEEccC
Q 005168 241 IRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQ-LTGEIPEHLAVGCVNLQFLMLSN 312 (710)
Q Consensus 241 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~-l~~~i~~~~~~~l~~L~~L~Ls~ 312 (710)
++ .+|. + .+++++|++++|+++++.+.+|.++++|++|++++|+ ++ .++...|.++++|++|++++
T Consensus 23 l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 23 IQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp CS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEE
T ss_pred cc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCC
Confidence 44 5565 2 2366677777776666665566666666666666665 55 55555555555555555544
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=6.4e-23 Score=215.30 Aligned_cols=182 Identities=20% Similarity=0.183 Sum_probs=92.5
Q ss_pred EEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCC----ccCcCCC-CCCEEeccCCccCCcCChhhhcCC-----C
Q 005168 234 LDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIP----SSFGNMK-FLQLLDLSNNQLTGEIPEHLAVGC-----V 303 (710)
Q Consensus 234 L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~----~~f~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l-----~ 303 (710)
++++.|.+++.+|.... ..++|++|++++|.+.+..+ .+|.+++ +|++|++++|.+. ......+..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG-FKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC-HHHHHHHHHHHhccCC
Confidence 45666666654444332 24457777777777665554 5566666 6777777777666 3322222222 5
Q ss_pred CCcEEEccCCCCcCeeeccCccCccCcCc----cccCC-CccceeeCccCccccccchhhc----C-CCCCCEEECCCCc
Q 005168 304 NLQFLMLSNNSLKEGLYLTNNSLSGNIPG----WLGNL-TWLIHIIMPENHLEGPIPVEFC----Q-LYSLQILDISDNN 373 (710)
Q Consensus 304 ~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~----~~~~l-~~L~~L~L~~n~l~~~~~~~~~----~-l~~L~~L~ls~n~ 373 (710)
+|++|++++|.+.. ..+. .+..+ ++|++|++++|.+++..+..+. . .++|++|++++|.
T Consensus 81 ~L~~L~Ls~n~l~~-----------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 81 NVTSLNLSGNFLSY-----------KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp TCCEEECCSSCGGG-----------SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred CccEEECcCCcCCh-----------HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 66666665555442 1222 12233 4555555555555544433322 1 1355555555554
Q ss_pred CcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCC-CccEEecCCCcccccCCcc----cCCC-CC
Q 005168 374 ISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELS-QLSHLILGHNNLEGEVPVQ----LCEL-NQ 447 (710)
Q Consensus 374 i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~----~~~l-~~ 447 (710)
+.+.... .++..+..++ +|++|+|++|++++..+.. +..+ ++
T Consensus 150 l~~~~~~--------------------------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~ 197 (362)
T 3goz_A 150 LGIKSSD--------------------------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197 (362)
T ss_dssp GGGSCHH--------------------------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred CCHHHHH--------------------------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCC
Confidence 4421110 2223334444 6777777777666544432 2333 46
Q ss_pred CCEEEccCCcccc
Q 005168 448 LQLLDLSNNSLHG 460 (710)
Q Consensus 448 L~~L~L~~n~l~~ 460 (710)
|++|++++|.+++
T Consensus 198 L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 198 VTSLDLSANLLGL 210 (362)
T ss_dssp CCEEECTTSCGGG
T ss_pred CCEEECCCCCCCh
Confidence 7777777776653
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=5.8e-21 Score=199.32 Aligned_cols=203 Identities=19% Similarity=0.184 Sum_probs=140.9
Q ss_pred CEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEE-Ec
Q 005168 232 GILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFL-ML 310 (710)
Q Consensus 232 ~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L-~L 310 (710)
++++-++++++ .+|..+. +++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+|..+|.++++++++ .+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56778888888 8887663 5899999999999987778899999999999999998767888888888887764 33
Q ss_pred cCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCC-CcCcccCCCCCC--CCCc
Q 005168 311 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISD-NNISGSLPSCFH--PLSI 387 (710)
Q Consensus 311 s~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~-n~i~~~~~~~~~--~~~L 387 (710)
+.|. ++++.+..|..+++|++|++++|++....+..+....++..+++.+ +.+..+.+..|. ...+
T Consensus 88 ~~N~-----------l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 88 KANN-----------LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156 (350)
T ss_dssp EETT-----------CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred cCCc-----------ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence 3444 4446678888899999999999988877777777777888888865 567666666554 2345
Q ss_pred ceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCC-CcccccCCcccCCCCCCCEEEccCCcccccCC
Q 005168 388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGH-NNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP 463 (710)
Q Consensus 388 ~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 463 (710)
+.|++++|.++. +.+..| ...+|+++++++ |.++.+.+++|.++++|++||+++|+++..++
T Consensus 157 ~~L~L~~N~i~~-------------i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 157 VILWLNKNGIQE-------------IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp EEEECCSSCCCE-------------ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred hhhccccccccC-------------CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh
Confidence 556555554442 112222 234566666653 45554444556666666666666666654333
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=3.1e-23 Score=220.03 Aligned_cols=88 Identities=19% Similarity=0.238 Sum_probs=58.7
Q ss_pred cccEEECcCCcCC----CCCCccccccCCCCEEeCCCccCCCC----CchhhcC--CccCCEEeCcCCcCcc----cCCc
Q 005168 514 LLSGLYLSCNKLI----GHIPPQIGNLTRIQTLNLSYNNLTGL----IPSTFSN--LKHIESLDLSYNKLNG----KIPH 579 (710)
Q Consensus 514 ~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~--l~~L~~L~Ls~N~i~~----~~~~ 579 (710)
+|+.|+|++|.++ ..+|..+..+++|++|+|++|.+++. .+..+.. +++|++|+|++|+++. .+|.
T Consensus 217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~ 296 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence 5555555555553 34455666777777777777777755 3445533 7778888888887775 3666
Q ss_pred cc-ccCCCCCEEeccCCcccccc
Q 005168 580 QL-VELKTLEVFSVAYNNLSGEI 601 (710)
Q Consensus 580 ~l-~~l~~L~~L~l~~N~l~~~~ 601 (710)
.+ ..+++|+.|++++|++++..
T Consensus 297 ~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 297 VIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHhcCCCceEEEccCCcCCcch
Confidence 55 55778888888888877655
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5e-21 Score=188.49 Aligned_cols=197 Identities=22% Similarity=0.219 Sum_probs=124.8
Q ss_pred CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCc-CcccCCccCcCCCCCCEEeccC-CccCCcCChhhhcCCCCCcE
Q 005168 230 RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNA-LDGSIPSSFGNMKFLQLLDLSN-NQLTGEIPEHLAVGCVNLQF 307 (710)
Q Consensus 230 ~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~-i~~~~~~~f~~l~~L~~L~Ls~-n~l~~~i~~~~~~~l~~L~~ 307 (710)
++++|++++|+++ .+|...+..+++|++|++++|. ++.+.+.+|.++++|++|++++ |.++ .++...|.++++|++
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence 5566666666665 4444333345666666666664 5555555666666666666666 6665 556555556666666
Q ss_pred EEccCCCCcCeeeccCccCccCcCccccCCCccc---eeeCccC-ccccccchhhcCCCCCC-EEECCCCcCcccCCCCC
Q 005168 308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLI---HIIMPEN-HLEGPIPVEFCQLYSLQ-ILDISDNNISGSLPSCF 382 (710)
Q Consensus 308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~ls~n~i~~~~~~~~ 382 (710)
|++++|.+.. +|. |..+++|+ +|++++| .+.+..+..|.++++|+ +|++++|.+..+++..+
T Consensus 110 L~l~~n~l~~------------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~ 176 (239)
T 2xwt_C 110 LGIFNTGLKM------------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176 (239)
T ss_dssp EEEEEECCCS------------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred EeCCCCCCcc------------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence 6666555542 233 55555555 7777777 66666666677777777 77777777776666666
Q ss_pred CCCCcceEEccCcc-ccccccccCCCccCcccCChhhhcC-CCccEEecCCCcccccCCcccCCCCCCCEEEccCCc
Q 005168 383 HPLSIEQVHLSKNM-LHRQLKRDLSYNLLNGSIPDWIGEL-SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNS 457 (710)
Q Consensus 383 ~~~~L~~L~l~~n~-l~~~~~~~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 457 (710)
...+|++|++++|+ ++. ..+..|.++ ++|++|++++|++++..+. .+++|+.|+++++.
T Consensus 177 ~~~~L~~L~L~~n~~l~~-------------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 177 NGTKLDAVYLNKNKYLTV-------------IDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTCEEEEEECTTCTTCCE-------------ECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCCCEEEcCCCCCccc-------------CCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 55667777665553 432 445567777 8888889988888854443 56788888887763
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=9.2e-21 Score=197.77 Aligned_cols=242 Identities=22% Similarity=0.154 Sum_probs=174.0
Q ss_pred cEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccC
Q 005168 257 YVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGN 336 (710)
Q Consensus 257 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~ 336 (710)
++++.++++++ .+|..+ .+++++|+|++|+|+ .+|..+|.++++|++|+|++|.+.+. +.+.+|.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~----------i~~~~f~~ 77 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEV----------IEADVFSN 77 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCE----------ECTTSBCS
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCc----------cChhHhhc
Confidence 56777888888 445544 367889999999998 88888888889999988888876541 23456788
Q ss_pred CCccce-eeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCC
Q 005168 337 LTWLIH-IIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP 415 (710)
Q Consensus 337 l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~ 415 (710)
++++++ +.+..|++..+.+..|..+++|++|++++|.+....+..+
T Consensus 78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--------------------------------- 124 (350)
T 4ay9_X 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--------------------------------- 124 (350)
T ss_dssp CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT---------------------------------
T ss_pred chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh---------------------------------
Confidence 887765 4556678887778888888888888888888875544332
Q ss_pred hhhhcCCCccEEecCC-CcccccCCcccCCCC-CCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecC
Q 005168 416 DWIGELSQLSHLILGH-NNLEGEVPVQLCELN-QLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEG 493 (710)
Q Consensus 416 ~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (710)
....++..+++.+ +.+....+.+|..+. .++.|++++|+++.+.+..|..
T Consensus 125 ---~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~------------------------- 176 (350)
T 4ay9_X 125 ---IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG------------------------- 176 (350)
T ss_dssp ---CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT-------------------------
T ss_pred ---cccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccc-------------------------
Confidence 2234556666644 456655555666654 5888889988888666655533
Q ss_pred CCcceeeccccceecccccccccEEECc-CCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCc
Q 005168 494 PQGDFTTKNIAYIYQGKVLSLLSGLYLS-CNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK 572 (710)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 572 (710)
..++.|+++ +|.++.+.+.+|.++++|++|+|++|+|+.+++..|.+ |+.|.+.++.
T Consensus 177 -------------------~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~ 234 (350)
T 4ay9_X 177 -------------------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTY 234 (350)
T ss_dssp -------------------EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCT
T ss_pred -------------------cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc---chHhhhccCC
Confidence 258888887 46777666678999999999999999999888776654 4555554444
Q ss_pred CcccCCcccccCCCCCEEeccCCc
Q 005168 573 LNGKIPHQLVELKTLEVFSVAYNN 596 (710)
Q Consensus 573 i~~~~~~~l~~l~~L~~L~l~~N~ 596 (710)
-...+|. +..+++|+.+++.++.
T Consensus 235 ~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 235 NLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp TCCCCCC-TTTCCSCCEEECSCHH
T ss_pred CcCcCCC-chhCcChhhCcCCCCc
Confidence 3336663 7889999999997543
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.2e-20 Score=185.19 Aligned_cols=160 Identities=24% Similarity=0.287 Sum_probs=149.3
Q ss_pred CCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeec
Q 005168 422 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTK 501 (710)
Q Consensus 422 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (710)
++++.|++++|.+.+..+.+|.++++|++|++++|.+++..+..|..+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------------------------------- 82 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL-------------------------------- 82 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC--------------------------------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccC--------------------------------
Confidence 589999999999998888899999999999999999998888777664
Q ss_pred cccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccc
Q 005168 502 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL 581 (710)
Q Consensus 502 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l 581 (710)
++|+.|++++|.+++..+..|..+++|++|+|++|+++++.+..|..+++|++|+|++|++++..+..+
T Consensus 83 -----------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 151 (251)
T 3m19_A 83 -----------TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151 (251)
T ss_dssp -----------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred -----------CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHc
Confidence 489999999999998888899999999999999999999999999999999999999999998888789
Q ss_pred ccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCC
Q 005168 582 VELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCG 624 (710)
Q Consensus 582 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~ 624 (710)
..+++|+.|++++|.+....+..+..+..++.+.+.+|++.|+
T Consensus 152 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999999999999999988887788889999999999999998
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.2e-20 Score=193.05 Aligned_cols=99 Identities=19% Similarity=0.245 Sum_probs=51.5
Q ss_pred cEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccC
Q 005168 257 YVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGN 336 (710)
Q Consensus 257 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~ 336 (710)
..+.+..+.+.+.. .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.. .+. +..
T Consensus 22 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~------------~~~-~~~ 83 (308)
T 1h6u_A 22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITD------------LAP-LKN 83 (308)
T ss_dssp HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCC------------CGG-GTT
T ss_pred HHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCC------------Chh-Hcc
Confidence 33344555544332 2345666777777777766 5552 3356666666666665542 122 555
Q ss_pred CCccceeeCccCccccccchhhcCCCCCCEEECCCCcCc
Q 005168 337 LTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS 375 (710)
Q Consensus 337 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~ 375 (710)
+++|++|++++|.+.+. ..+..+++|++|++++|.+.
T Consensus 84 l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~ 120 (308)
T 1h6u_A 84 LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT 120 (308)
T ss_dssp CCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCC
T ss_pred CCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCC
Confidence 55555555555555432 13444555555555554443
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=8.1e-21 Score=194.75 Aligned_cols=86 Identities=14% Similarity=0.064 Sum_probs=50.4
Q ss_pred CCCEEEcccCcCcccCChhh--hhcCCCccEEEccCCcCcccCCccC--cCCCCCCEEeccCCccCCcCCh---hhhcCC
Q 005168 230 RLGILDISNNNIRGHIPVEI--GDVLPSLYVFNISMNALDGSIPSSF--GNMKFLQLLDLSNNQLTGEIPE---HLAVGC 302 (710)
Q Consensus 230 ~L~~L~ls~n~i~~~~~~~~--~~~~~~L~~L~L~~n~i~~~~~~~f--~~l~~L~~L~Ls~n~l~~~i~~---~~~~~l 302 (710)
.++.+.+.++.++...-..+ +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+. ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46677777666542110011 1114568888888888887777776 7788888888888887743331 112244
Q ss_pred CCCcEEEccCCCC
Q 005168 303 VNLQFLMLSNNSL 315 (710)
Q Consensus 303 ~~L~~L~Ls~n~l 315 (710)
++|++|++++|.+
T Consensus 145 ~~L~~L~Ls~n~l 157 (310)
T 4glp_A 145 PGLKVLSIAQAHS 157 (310)
T ss_dssp SCCCEEEEECCSS
T ss_pred cCCCEEEeeCCCc
Confidence 5555555444443
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=6.8e-21 Score=184.45 Aligned_cols=177 Identities=22% Similarity=0.302 Sum_probs=144.8
Q ss_pred CCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeec
Q 005168 422 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTK 501 (710)
Q Consensus 422 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (710)
++++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++.
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~------------------------------- 80 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR------------------------------- 80 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-------------------------------
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-------------------------------
Confidence 5789999999999988888899999999999999999988888887644
Q ss_pred cccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccc
Q 005168 502 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL 581 (710)
Q Consensus 502 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l 581 (710)
+|+.|+|++|.+++..+..|.++++|++|+|++|+++++.++.|..+++|+.|+|++|+|++..++.+
T Consensus 81 ------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 81 ------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp ------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 89999999999998888889999999999999999999999999999999999999999998888889
Q ss_pred ccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCccCCCCCCCcc
Q 005168 582 VELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNL 649 (710)
Q Consensus 582 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~ 649 (710)
..+++|+.|++++|+|.|.|.- .++..+. ..++..- ....|..|...++..+.....+..
T Consensus 149 ~~l~~L~~L~L~~N~~~c~c~l--~~l~~~l----~~~~~~~--~~~~C~~P~~l~g~~l~~l~~~~~ 208 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPFICDCHL--KWLADYL----HTNPIET--SGARCTSPRRLANKRIGQIKSKKF 208 (220)
T ss_dssp TTCTTCCEEECCSSCEECSGGG--HHHHHHH----HHCCCBC--SCCBEEESGGGTTCBGGGSCGGGC
T ss_pred hCCCCCCEEEeCCCCcCCCCcc--HHHHHHH----HhCCCCc--cCCCcCCchHHcCCchhhCCHHHC
Confidence 9999999999999999998852 2322211 1111110 112578888877776665555443
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=9.3e-21 Score=194.31 Aligned_cols=226 Identities=18% Similarity=0.145 Sum_probs=149.2
Q ss_pred CCCCEEEccCCcCcccCChhH--hhcCCCCcEEEccCCcccccCccCc--cCCCCCCEEEcccCcCcccCC----hhhhh
Q 005168 180 HDLEYVRLSHIKMNGEFPNWL--LENNTKLATLFLVNDSLAGPFWLPI--HSHKRLGILDISNNNIRGHIP----VEIGD 251 (710)
Q Consensus 180 ~~L~~L~ls~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~ls~n~i~~~~~----~~~~~ 251 (710)
..++.+.+.++.++......+ +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~- 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW- 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence 457888888777654221111 1245779999999999888888777 888899999999998885444 2222
Q ss_pred cCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCc--CC-hhhhcCCCCCcEEEccCCCCcCeeeccCccCcc
Q 005168 252 VLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGE--IP-EHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSG 328 (710)
Q Consensus 252 ~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~--i~-~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~ 328 (710)
.+++|++|++++|.+.+..+..|.++++|++|++++|++.+. ++ ...+..+++|++|++++|.+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----------- 211 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET----------- 211 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-----------
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-----------
Confidence 477888888888888877778888888888888888887532 22 1222456677777776666542
Q ss_pred CcCc----cccCCCccceeeCccCccccccchhhcCC---CCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccc
Q 005168 329 NIPG----WLGNLTWLIHIIMPENHLEGPIPVEFCQL---YSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQL 401 (710)
Q Consensus 329 ~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~ 401 (710)
.+. .++.+++|++|++++|.+.+..|..+..+ ++|++|++++|+++.+
T Consensus 212 -l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l------------------------ 266 (310)
T 4glp_A 212 -PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV------------------------ 266 (310)
T ss_dssp -HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC------------------------
T ss_pred -hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch------------------------
Confidence 111 23556666666666666666555555444 4666666666665532
Q ss_pred cccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCccc
Q 005168 402 KRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLH 459 (710)
Q Consensus 402 ~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 459 (710)
|..+. ++|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus 267 -------------p~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 267 -------------PKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp -------------CSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred -------------hhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 22221 5777777777777754 32 566778888888888775
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.5e-21 Score=202.99 Aligned_cols=130 Identities=19% Similarity=0.218 Sum_probs=74.8
Q ss_pred CCCEEEcccCcCcccCChhhhhcC--CCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcE
Q 005168 230 RLGILDISNNNIRGHIPVEIGDVL--PSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF 307 (710)
Q Consensus 230 ~L~~L~ls~n~i~~~~~~~~~~~~--~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~ 307 (710)
.++.++++++.+. |..+.. + ++++.|++++|.+.+..+. +..+++|++|++++|.+++......+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 3667777777665 233322 3 6777788877777765554 4457777777777777653312233445666666
Q ss_pred EEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccC-ccccc-cchhhcCCCCCCEEECCCC-cCc
Q 005168 308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPEN-HLEGP-IPVEFCQLYSLQILDISDN-NIS 375 (710)
Q Consensus 308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~ls~n-~i~ 375 (710)
|++++|.+.. ..+..++.+++|++|++++| .+++. .+..+..+++|++|++++| .++
T Consensus 123 L~L~~~~l~~-----------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 123 LSLEGLRLSD-----------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp EECTTCBCCH-----------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred EeCcCcccCH-----------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 6666655432 33444555666666666665 34432 3444555556666665555 443
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=4.1e-22 Score=207.29 Aligned_cols=254 Identities=16% Similarity=0.165 Sum_probs=165.1
Q ss_pred CccEEEccCCcCcccCCccCcCC--CCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccC-cC
Q 005168 255 SLYVFNISMNALDGSIPSSFGNM--KFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGN-IP 331 (710)
Q Consensus 255 ~L~~L~L~~n~i~~~~~~~f~~l--~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~-~~ 331 (710)
.++.++++++.+. +..+..+ ++++.|++++|.+.+. +...+ .+++|++|++++|.+.. . .+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~~~-~~~~L~~L~L~~~~l~~-----------~~~~ 111 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAEHF-SPFRVQHMDLSNSVIEV-----------STLH 111 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSC-CCSCC-CCBCCCEEECTTCEECH-----------HHHH
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCcccccc-chhhc-cCCCCCEEEccCCCcCH-----------HHHH
Confidence 4677777777665 3445555 6777777777777733 33343 56777777777665442 2 44
Q ss_pred ccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCC-cCcccCCCCCCCCCcceEEccCccccccccccCCCccC
Q 005168 332 GWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDN-NISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLL 410 (710)
Q Consensus 332 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n-~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~ 410 (710)
..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++.
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~--------------------------------- 158 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF--------------------------------- 158 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH---------------------------------
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH---------------------------------
Confidence 55667777777777777776666666777777777777776 34321
Q ss_pred cccCChhhhcCCCccEEecCCC-ccccc-CCcccCCCC-CCCEEEccCCc--cc-ccCCCCcccccccccccCCCCCccc
Q 005168 411 NGSIPDWIGELSQLSHLILGHN-NLEGE-VPVQLCELN-QLQLLDLSNNS--LH-GSIPPCFDNTTLYESYNNSSSLDEK 484 (710)
Q Consensus 411 ~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n~--l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (710)
.++..+..+++|++|++++| .+++. .+..+..++ +|++|++++|. ++ +.+|..+.
T Consensus 159 --~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~----------------- 219 (336)
T 2ast_B 159 --ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR----------------- 219 (336)
T ss_dssp --HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-----------------
T ss_pred --HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-----------------
Confidence 13344566778888888888 77643 455567777 88888888884 33 12222221
Q ss_pred cccceeecCCCcceeeccccceecccccccccEEECcCCc-CCCCCCccccccCCCCEEeCCCcc-CCCCCchhhcCCcc
Q 005168 485 FEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNK-LIGHIPPQIGNLTRIQTLNLSYNN-LTGLIPSTFSNLKH 562 (710)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 562 (710)
.+++|+.|++++|. +++..+..+..+++|++|++++|. ++......+..+++
T Consensus 220 --------------------------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 220 --------------------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp --------------------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred --------------------------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 14578888888887 666667778888888888888885 32222225777888
Q ss_pred CCEEeCcCCcCcccCCcccccC-CCCCEEeccCCccccccCCCcc
Q 005168 563 IESLDLSYNKLNGKIPHQLVEL-KTLEVFSVAYNNLSGEILEWTA 606 (710)
Q Consensus 563 L~~L~Ls~N~i~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~ 606 (710)
|++|++++| +. ++.+..+ .+++.|++++|.+++..|.++.
T Consensus 274 L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 274 LKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCccc
Confidence 888888888 33 2233333 2366666888888887776543
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=5.5e-22 Score=208.19 Aligned_cols=258 Identities=17% Similarity=0.170 Sum_probs=123.4
Q ss_pred CCCCCCCccChhccCCCCCCEEEccCCcCcccCC----hhHhhcCC-CCcEEEccCCcccccCccCccCC-----CCCCE
Q 005168 164 SSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFP----NWLLENNT-KLATLFLVNDSLAGPFWLPIHSH-----KRLGI 233 (710)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~----~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~ 233 (710)
+.+.+.+.+|..+...++|++|++++|.+++..+ ..+ ..++ +|++|++++|.+.+..+..+..+ ++|++
T Consensus 6 s~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 6 TLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAF-ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred ccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHH-HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 4444555555555555556666666666554443 222 3444 56666666665555444443332 55555
Q ss_pred EEcccCcCcccCChhhhhc---C-CCccEEEccCCcCcccCCccC----cC-CCCCCEEeccCCccCCcCChhhhcCCCC
Q 005168 234 LDISNNNIRGHIPVEIGDV---L-PSLYVFNISMNALDGSIPSSF----GN-MKFLQLLDLSNNQLTGEIPEHLAVGCVN 304 (710)
Q Consensus 234 L~ls~n~i~~~~~~~~~~~---~-~~L~~L~L~~n~i~~~~~~~f----~~-l~~L~~L~Ls~n~l~~~i~~~~~~~l~~ 304 (710)
|++++|.+++..+..+... + ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+.....
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~------- 157 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE------- 157 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH-------
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH-------
Confidence 5555555553333322221 1 455555555555554333222 22 235555555555554211111
Q ss_pred CcEEEccCCCCcCeeeccCccCccCcCccccCCC-ccceeeCccCccccccchhh----cCC-CCCCEEECCCCcCcccC
Q 005168 305 LQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLT-WLIHIIMPENHLEGPIPVEF----CQL-YSLQILDISDNNISGSL 378 (710)
Q Consensus 305 L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~ls~n~i~~~~ 378 (710)
++..+..++ +|++|++++|.+++..+..+ ... ++|++|++++|.+.+..
T Consensus 158 -------------------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 158 -------------------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp -------------------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred -------------------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 112222332 44444444444443333222 222 24555555555444311
Q ss_pred C----CCC-C-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccC-------CcccCCC
Q 005168 379 P----SCF-H-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEV-------PVQLCEL 445 (710)
Q Consensus 379 ~----~~~-~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~l 445 (710)
. ..+ . +++|++|++++|.++..... .+...+..+++|++|++++|.+.+.. +..+..+
T Consensus 213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---------~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l 283 (362)
T 3goz_A 213 YAELAYIFSSIPNHVVSLNLCLNCLHGPSLE---------NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283 (362)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSSCCCCCCHH---------HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCcHHHH---------HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC
Confidence 1 111 1 22455554444443321100 11233455678888888888854332 3356778
Q ss_pred CCCCEEEccCCcccccCC
Q 005168 446 NQLQLLDLSNNSLHGSIP 463 (710)
Q Consensus 446 ~~L~~L~L~~n~l~~~~~ 463 (710)
++|+.||+++|++.+..+
T Consensus 284 ~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 284 QKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CEEEEECTTSCBCCGGGC
T ss_pred CceEEEecCCCcCCCcch
Confidence 889999999998875533
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=182.16 Aligned_cols=173 Identities=20% Similarity=0.278 Sum_probs=138.6
Q ss_pred CCccEEecCCCcccccCC-cccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceee
Q 005168 422 SQLSHLILGHNNLEGEVP-VQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTT 500 (710)
Q Consensus 422 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (710)
+.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+.
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~------------------------------ 81 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS------------------------------ 81 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT------------------------------
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC------------------------------
Confidence 356788889988887644 4578899999999999999887777776644
Q ss_pred ccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcc
Q 005168 501 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ 580 (710)
Q Consensus 501 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~ 580 (710)
+|+.|+|++|.+++..+..|.++++|++|+|++|+++++.|..|.++++|++|+|++|+|++..|..
T Consensus 82 -------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 82 -------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp -------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred -------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence 8999999999999888888999999999999999999999999999999999999999999988999
Q ss_pred cccCCCCCEEeccCCccccccCC-CccccccCCcccccCCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 005168 581 LVELKTLEVFSVAYNNLSGEILE-WTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERD 646 (710)
Q Consensus 581 l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~ 646 (710)
|..+++|+.|++++|+|.|.|+. |+..+..... ...+++ .|..|...++..+.....
T Consensus 149 ~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~-~~~~~~--------~C~~P~~l~g~~l~~l~~ 206 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKR-IVTGNP--------RCQKPYFLKEIPIQDVAI 206 (220)
T ss_dssp TTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSC-CBCCCC--------EEEESGGGTTEEGGGSCG
T ss_pred hcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcC-ccccCC--------ccCCChHHCCCChhhCCH
Confidence 99999999999999999999863 2222211111 112332 477777666665544433
No 97
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=3.1e-20 Score=189.90 Aligned_cols=103 Identities=19% Similarity=0.248 Sum_probs=65.9
Q ss_pred CCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCc
Q 005168 253 LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPG 332 (710)
Q Consensus 253 ~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~ 332 (710)
+++|++|++++|.+... + .+..+++|++|++++|.++ .++. +.++++|++|++++|.+.. . .
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~------------~-~ 101 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKN------------V-S 101 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSC------------C-G
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCC------------c-h
Confidence 45677777777776643 2 4666777777777777776 4554 4467777777776666553 1 2
Q ss_pred cccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCc
Q 005168 333 WLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS 375 (710)
Q Consensus 333 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~ 375 (710)
.+..+++|++|++++|.+.+.. .+..+++|++|++++|.+.
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccC
Confidence 4666777777777777766532 2666666666666666554
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=3.5e-21 Score=204.17 Aligned_cols=252 Identities=15% Similarity=0.153 Sum_probs=147.8
Q ss_pred cChhccCCCCCCEEEccCCcCcccCChhH---hhcCCCCcEEEccCCcc---cccCccCc-------cCCCCCCEEEccc
Q 005168 172 FPKFLYHQHDLEYVRLSHIKMNGEFPNWL---LENNTKLATLFLVNDSL---AGPFWLPI-------HSHKRLGILDISN 238 (710)
Q Consensus 172 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~---~~~~~~~~-------~~~~~L~~L~ls~ 238 (710)
++..+..+++|++|++++|.+++..+..+ +..+++|++|++++|.+ .+..|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 44555566777777777777665443332 23566777777766533 23333332 5667777777777
Q ss_pred CcCcc----cCChhhhhcCCCccEEEccCCcCcccCCccCc----CC---------CCCCEEeccCCccC-CcCCh--hh
Q 005168 239 NNIRG----HIPVEIGDVLPSLYVFNISMNALDGSIPSSFG----NM---------KFLQLLDLSNNQLT-GEIPE--HL 298 (710)
Q Consensus 239 n~i~~----~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~----~l---------~~L~~L~Ls~n~l~-~~i~~--~~ 298 (710)
|.+++ .+|..+.. +++|++|+|++|.+....+..+. .+ ++|++|++++|++. ..++. ..
T Consensus 104 n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 77663 23434433 56777777777766543332222 22 66777777777665 22232 23
Q ss_pred hcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccc----cccchhhcCCCCCCEEECCCCcC
Q 005168 299 AVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLE----GPIPVEFCQLYSLQILDISDNNI 374 (710)
Q Consensus 299 ~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~ls~n~i 374 (710)
+..+++|++|++++|.+... .+....+..+..+++|++|+|++|.++ ..++..+..+++|++|++++|.+
T Consensus 183 l~~~~~L~~L~L~~n~l~~~------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPE------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHH------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred HHhCCCcCEEECcCCCCCHh------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 34566777776666655410 000012225566666777777666664 34555666666666666666665
Q ss_pred cccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhc--CCCccEEecCCCcccc----cCCccc-CCCCC
Q 005168 375 SGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGE--LSQLSHLILGHNNLEG----EVPVQL-CELNQ 447 (710)
Q Consensus 375 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~-~~l~~ 447 (710)
.+.... .++.++.. +++|++|+|++|.+++ .+|..+ .++++
T Consensus 257 ~~~~~~--------------------------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~ 304 (386)
T 2ca6_A 257 SARGAA--------------------------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304 (386)
T ss_dssp CHHHHH--------------------------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred chhhHH--------------------------------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence 532100 23444533 7889999999998886 355555 56889
Q ss_pred CCEEEccCCcccccC
Q 005168 448 LQLLDLSNNSLHGSI 462 (710)
Q Consensus 448 L~~L~L~~n~l~~~~ 462 (710)
|++|++++|++++..
T Consensus 305 L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 305 LLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTSBSCTTS
T ss_pred ceEEEccCCcCCcch
Confidence 999999999887554
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.8e-19 Score=170.90 Aligned_cols=147 Identities=22% Similarity=0.287 Sum_probs=79.3
Q ss_pred EEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccC
Q 005168 233 ILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN 312 (710)
Q Consensus 233 ~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~ 312 (710)
.++.+++.++ .+|..+ .+++++|++++|.++++.+..|.++++|++|++++|+++ .++...|.++++|++|++++
T Consensus 11 ~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred EEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence 4455555554 445433 235566666666655555555555666666666666665 55555555556666665555
Q ss_pred CCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEE
Q 005168 313 NSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVH 391 (710)
Q Consensus 313 n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~ 391 (710)
|.+.. ..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+. +++|+.|+
T Consensus 86 n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 86 NQLQS-----------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp SCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcCCc-----------cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 54442 3334455556666666666666555555556666666666666665554444333 34444444
Q ss_pred ccCc
Q 005168 392 LSKN 395 (710)
Q Consensus 392 l~~n 395 (710)
+++|
T Consensus 155 l~~N 158 (208)
T 2o6s_A 155 LHDN 158 (208)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 4444
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=3.2e-19 Score=186.86 Aligned_cols=145 Identities=26% Similarity=0.308 Sum_probs=123.0
Q ss_pred Chhhh-cCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecC
Q 005168 415 PDWIG-ELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEG 493 (710)
Q Consensus 415 ~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (710)
+.++. .+++|++|+|++|++++..+.+|..+++|++|+|++|.+++..+..|..+
T Consensus 56 ~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------------------ 111 (361)
T 2xot_A 56 AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL------------------------ 111 (361)
T ss_dssp TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC------------------------
T ss_pred hhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCC------------------------
Confidence 33444 67889999999999988888888999999999999999987777777663
Q ss_pred CCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhh---cCCccCCEEeCcC
Q 005168 494 PQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTF---SNLKHIESLDLSY 570 (710)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~ 570 (710)
++|+.|+|++|.+++..+..|.++++|++|+|++|.++++++..| ..+++|+.|+|++
T Consensus 112 -------------------~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 112 -------------------QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp -------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred -------------------cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 489999999999998888899999999999999999999888877 5689999999999
Q ss_pred CcCcccCCcccccCCC--CCEEeccCCccccccC
Q 005168 571 NKLNGKIPHQLVELKT--LEVFSVAYNNLSGEIL 602 (710)
Q Consensus 571 N~i~~~~~~~l~~l~~--L~~L~l~~N~l~~~~~ 602 (710)
|+|+...+..+..++. ++.|++++|+|.|+|.
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 9999777678888877 4889999999999884
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=9.2e-19 Score=169.42 Aligned_cols=157 Identities=22% Similarity=0.264 Sum_probs=142.2
Q ss_pred cEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeecccc
Q 005168 425 SHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIA 504 (710)
Q Consensus 425 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (710)
+.++++++.++. +|..+. ++++.|++++|.+++..+..|..+
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l----------------------------------- 55 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPY----------------------------------- 55 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTC-----------------------------------
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCC-----------------------------------
Confidence 678889998884 454443 689999999999998888777664
Q ss_pred ceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccC
Q 005168 505 YIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL 584 (710)
Q Consensus 505 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l 584 (710)
++|+.|+|++|.+++..|..|.++++|++|+|++|.++.+++..|.++++|++|+|++|+|++..|+.|..+
T Consensus 56 --------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l 127 (220)
T 2v9t_B 56 --------KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL 127 (220)
T ss_dssp --------TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred --------CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCC
Confidence 489999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred CCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCC
Q 005168 585 KTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL 627 (710)
Q Consensus 585 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 627 (710)
++|+.|++++|.++...+..+..+..++.+.+.+|++.|+|++
T Consensus 128 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 9999999999999998887788888999999999999999764
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.5e-18 Score=166.73 Aligned_cols=142 Identities=26% Similarity=0.299 Sum_probs=103.7
Q ss_pred hhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCC
Q 005168 416 DWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQ 495 (710)
Q Consensus 416 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (710)
..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..
T Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--------------------------- 98 (208)
T 2o6s_A 46 GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK--------------------------- 98 (208)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------------------
T ss_pred hhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC---------------------------
Confidence 34556677777777777777666666777778888888888777665555554
Q ss_pred cceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcc
Q 005168 496 GDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 575 (710)
Q Consensus 496 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 575 (710)
+++|+.|++++|.+++..+..|..+++|++|+|++|.++++.+..|..+++|++|++++|++.+
T Consensus 99 ----------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 99 ----------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp ----------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred ----------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 3377778888887777666667778888888888888887777777778888888888887664
Q ss_pred cCCcccccCCCCCEEeccCCccccccCCCccc
Q 005168 576 KIPHQLVELKTLEVFSVAYNNLSGEILEWTAQ 607 (710)
Q Consensus 576 ~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 607 (710)
.++.|+.|+++.|.+++.+|.++..
T Consensus 163 -------~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 163 -------TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp -------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred -------CCCCHHHHHHHHHhCCceeeccCcc
Confidence 3456777788888888877776544
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=5.2e-19 Score=185.20 Aligned_cols=162 Identities=23% Similarity=0.183 Sum_probs=141.7
Q ss_pred CCccEEecCCCcccccCCcccC-CCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceee
Q 005168 422 SQLSHLILGHNNLEGEVPVQLC-ELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTT 500 (710)
Q Consensus 422 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (710)
+.++.|+|++|++++..+..|. .+++|+.|+|++|.+++..+..|..+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l------------------------------- 87 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV------------------------------- 87 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC-------------------------------
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC-------------------------------
Confidence 4689999999999988888887 99999999999999998888888764
Q ss_pred ccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcc
Q 005168 501 KNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQ 580 (710)
Q Consensus 501 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~ 580 (710)
++|+.|+|++|++++..+..|.++++|++|+|++|.|+++.+..|.++++|+.|+|++|+|+...+..
T Consensus 88 ------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 88 ------------PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp ------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred ------------CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 49999999999999888889999999999999999999999999999999999999999999766655
Q ss_pred c---ccCCCCCEEeccCCccccccCCCcccccc--CCcccccCCCCCCCCC
Q 005168 581 L---VELKTLEVFSVAYNNLSGEILEWTAQFAT--FNKSSYEGNTFLCGLP 626 (710)
Q Consensus 581 l---~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--~~~~~~~~n~~~c~~~ 626 (710)
+ ..+++|+.|++++|++....+..+..+.. +..+.+.+|||.|+|.
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 6 56999999999999999765555555554 3668899999999984
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=4.9e-18 Score=165.48 Aligned_cols=137 Identities=26% Similarity=0.244 Sum_probs=123.2
Q ss_pred CCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeec
Q 005168 422 SQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTK 501 (710)
Q Consensus 422 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (710)
++|++|+|++|.+++..+..|..+++|++|++++|.+.+..+..|..
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~--------------------------------- 86 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS--------------------------------- 86 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------------------------
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc---------------------------------
Confidence 68999999999999888888999999999999999998766666665
Q ss_pred cccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccc
Q 005168 502 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL 581 (710)
Q Consensus 502 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l 581 (710)
+++|+.|+|++|.+++..+..|..+++|++|+|++|+++.+ |..+..+++|+.|+|++|++++..+..+
T Consensus 87 ----------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 87 ----------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp ----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred ----------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccCHHHH
Confidence 34899999999999988888899999999999999999955 6778999999999999999998777889
Q ss_pred ccCCCCCEEeccCCccccccC
Q 005168 582 VELKTLEVFSVAYNNLSGEIL 602 (710)
Q Consensus 582 ~~l~~L~~L~l~~N~l~~~~~ 602 (710)
..+++|+.|++++|++.|.|+
T Consensus 156 ~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTCTTCCEEECTTSCBCTTBG
T ss_pred hCCCCCCEEEeeCCCccCCcc
Confidence 999999999999999999886
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.9e-18 Score=165.94 Aligned_cols=158 Identities=17% Similarity=0.214 Sum_probs=141.3
Q ss_pred ccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCC-CCcccccccccccCCCCCccccccceeecCCCcceeecc
Q 005168 424 LSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIP-PCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKN 502 (710)
Q Consensus 424 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (710)
-+.+++++|.++. +|..+ ...+++|++++|.+++..+ ..|..
T Consensus 13 ~~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~---------------------------------- 55 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKK---------------------------------- 55 (220)
T ss_dssp TTEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGG----------------------------------
T ss_pred CCEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhcc----------------------------------
Confidence 3689999999985 45544 3467999999999998755 34554
Q ss_pred ccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccc
Q 005168 503 IAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV 582 (710)
Q Consensus 503 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~ 582 (710)
+++|+.|+|++|.+++..+..|.++++|++|+|++|.++++.++.|.++++|++|+|++|+|++..|..|.
T Consensus 56 ---------l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 126 (220)
T 2v70_A 56 ---------LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI 126 (220)
T ss_dssp ---------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST
T ss_pred ---------CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC
Confidence 45899999999999998888999999999999999999999999999999999999999999999899999
Q ss_pred cCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCC
Q 005168 583 ELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL 627 (710)
Q Consensus 583 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 627 (710)
.+++|+.|++++|.+++..|..+..+..+..+.+.+|++.|+|+.
T Consensus 127 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 999999999999999998898889999999999999999999764
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=9.3e-18 Score=169.89 Aligned_cols=81 Identities=28% Similarity=0.491 Sum_probs=51.8
Q ss_pred ccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEec
Q 005168 513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSV 592 (710)
Q Consensus 513 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l 592 (710)
++|+.|++++|.+++. ..+..+++|++|++++|.++++.+ +..+++|+.|++++|+++. ++ .+..+++|+.|++
T Consensus 134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l 207 (291)
T 1h6t_A 134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL 207 (291)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEE
T ss_pred CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 3566666666666543 456666677777777777766544 6666777777777777664 33 2666677777777
Q ss_pred cCCcccc
Q 005168 593 AYNNLSG 599 (710)
Q Consensus 593 ~~N~l~~ 599 (710)
++|++..
T Consensus 208 ~~n~i~~ 214 (291)
T 1h6t_A 208 FSQECLN 214 (291)
T ss_dssp EEEEEEC
T ss_pred cCCcccC
Confidence 7776664
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.2e-17 Score=162.69 Aligned_cols=157 Identities=24% Similarity=0.317 Sum_probs=140.7
Q ss_pred CccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeecc
Q 005168 423 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKN 502 (710)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (710)
..+.++.+++.++. +|..+ .++|++|++++|.+++..|..|..+
T Consensus 20 s~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l--------------------------------- 63 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSL--------------------------------- 63 (229)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTC---------------------------------
T ss_pred eCCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCc---------------------------------
Confidence 46778999998884 45444 3899999999999998888888764
Q ss_pred ccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccc
Q 005168 503 IAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV 582 (710)
Q Consensus 503 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~ 582 (710)
++|+.|+|++|.+.+..+..|.++++|+.|+|++|+++++.+..|..+++|++|+|++|+|+ .+|..+.
T Consensus 64 ----------~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 132 (229)
T 3e6j_A 64 ----------INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE 132 (229)
T ss_dssp ----------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG
T ss_pred ----------cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc
Confidence 48999999999999888888999999999999999999999999999999999999999999 7788899
Q ss_pred cCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168 583 ELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 626 (710)
Q Consensus 583 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 626 (710)
.+++|+.|++++|.+....+..+..+..++.+.+.+||+.|+|+
T Consensus 133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 99999999999999998777778888899999999999999985
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1e-17 Score=183.73 Aligned_cols=56 Identities=27% Similarity=0.310 Sum_probs=33.0
Q ss_pred CCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCccc
Q 005168 304 NLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGS 377 (710)
Q Consensus 304 ~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~ 377 (710)
+|+.|++++|.+.. +|..+ .++|++|++++|.++. +| ..+++|++|++++|.++++
T Consensus 60 ~L~~L~Ls~n~L~~------------lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~i 115 (571)
T 3cvr_A 60 QFSELQLNRLNLSS------------LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLSTL 115 (571)
T ss_dssp TCSEEECCSSCCSC------------CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC
T ss_pred CccEEEeCCCCCCc------------cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCCc
Confidence 67777666665542 33333 2567777777776663 33 3356666677766666653
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=1.4e-17 Score=182.72 Aligned_cols=196 Identities=23% Similarity=0.292 Sum_probs=111.2
Q ss_pred CccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccc
Q 005168 255 SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWL 334 (710)
Q Consensus 255 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~ 334 (710)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+.. +|. +
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~------------ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST------------LPE-L 118 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC------------CCC-C
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC------------cch-h
Confidence 67777777777765 44333 256777777777776 666 135666666666665542 232 3
Q ss_pred cCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccC
Q 005168 335 GNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSI 414 (710)
Q Consensus 335 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~ 414 (710)
.. +|++|++++|.+++ +|. .+++|+.|++++|.++++
T Consensus 119 ~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l------------------------------------- 155 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTML------------------------------------- 155 (571)
T ss_dssp CT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-------------------------------------
T ss_pred hc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcC-------------------------------------
Confidence 32 55555555555554 222 344555555555544421
Q ss_pred ChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCC
Q 005168 415 PDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGP 494 (710)
Q Consensus 415 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (710)
|. .+++|++|++++|++++ +|. |. ++|+.|++++|.++ .+|. +.. .+
T Consensus 156 p~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~-~L----------------------- 202 (571)
T 3cvr_A 156 PE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV-RN----------------------- 202 (571)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------------------------
T ss_pred CC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH-hh-----------------------
Confidence 21 24577777777777775 444 54 77778888777776 3333 321 00
Q ss_pred CcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCcc
Q 005168 495 QGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKH 562 (710)
Q Consensus 495 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 562 (710)
....+.|+.|+|++|.++. +|..+..+++|+.|+|++|.+++..|..+..++.
T Consensus 203 --------------~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 203 --------------HHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp -------------------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred --------------hcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 0001234677777777763 4555555777777777777777666666665443
No 110
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=5.2e-18 Score=175.35 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=81.7
Q ss_pred CCCCcEEEccCCcccccCccCccC-CCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcC------
Q 005168 204 NTKLATLFLVNDSLAGPFWLPIHS-HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGN------ 276 (710)
Q Consensus 204 l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~------ 276 (710)
+++++.|.++++ +.......+.. +++|++|||++|++. ....... .++.+..+.+..|. +.+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~~~~-~~~~~~~~~~~~~~---I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIK-MYSGKAG-TYPNGKFYIYMANF---VPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEEC-CEEESSS-SSGGGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeE-EecCccc-cccccccccccccc---cCHHHhcccccccc
Confidence 456777777653 11111112222 677888888888776 1111101 12234455555553 44566777
Q ss_pred --CCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCc----c
Q 005168 277 --MKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENH----L 350 (710)
Q Consensus 277 --l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l 350 (710)
+++|+.|++.+ .++ .++..+|.++++|+.++++.|.+.. +.+.+|.++.++..+....+. .
T Consensus 98 ~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~-----------i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPN-----------LLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp EECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCE-----------ECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred cccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccc-----------cchhhhcCCCceEEecCcchhhhhcc
Confidence 88888888877 676 7788888788888888777766553 455667666666666655432 1
Q ss_pred ccccchhhcCCCCCC
Q 005168 351 EGPIPVEFCQLYSLQ 365 (710)
Q Consensus 351 ~~~~~~~~~~l~~L~ 365 (710)
......+|.++..|+
T Consensus 165 ~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLE 179 (329)
T ss_dssp TTTTTSCEEESCCCE
T ss_pred ccccccccccccccc
Confidence 222334455555555
No 111
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=2e-17 Score=156.39 Aligned_cols=168 Identities=24% Similarity=0.331 Sum_probs=131.9
Q ss_pred cEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCC-CcccccccccccCCCCCccccccceeecCCCcceeeccc
Q 005168 425 SHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPP-CFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNI 503 (710)
Q Consensus 425 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (710)
+.+++++|.++ .+|..+. .++++|++++|.+++..+. .|..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~----------------------------------- 52 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGR----------------------------------- 52 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGG-----------------------------------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCcccccc-----------------------------------
Confidence 78889998887 4554443 3899999999999876664 3554
Q ss_pred cceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccccc
Q 005168 504 AYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 583 (710)
Q Consensus 504 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 583 (710)
+++|+.|+|++|.+++..|..|.++++|++|+|++|+++++.+..|.++++|++|+|++|+|++..|+.+..
T Consensus 53 --------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (192)
T 1w8a_A 53 --------LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124 (192)
T ss_dssp --------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred --------CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc
Confidence 448999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEeccCCccccccCCCcccccc-CCcccccCCCCCCCCCCCCCCCCCCCCCccCCCCCCC
Q 005168 584 LKTLEVFSVAYNNLSGEILEWTAQFAT-FNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDD 647 (710)
Q Consensus 584 l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~ 647 (710)
+++|+.|++++|+|.|.|+. .++.. +......++.. .|..|...++..+......
T Consensus 125 l~~L~~L~L~~N~l~c~c~l--~~~~~~l~~~~~~~~~~-------~C~~P~~l~~~~l~~l~~~ 180 (192)
T 1w8a_A 125 LNSLTSLNLASNPFNCNCHL--AWFAEWLRKKSLNGGAA-------RCGAPSKVRDVQIKDLPHS 180 (192)
T ss_dssp CTTCCEEECTTCCBCCSGGG--HHHHHHHHHHCCSGGGC-------BBCSSTTTTTSBGGGSCTT
T ss_pred CCCCCEEEeCCCCccCcCcc--hHHHHHHHHcCCCCCCC-------CCCCChHHcCCChhhCcHh
Confidence 99999999999999999863 22222 12222333333 3666766666655444433
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=4.7e-18 Score=175.66 Aligned_cols=288 Identities=13% Similarity=0.015 Sum_probs=162.9
Q ss_pred CCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCccc--ccCccCccCCCCCCEEEcccCcCcccCChhhhhc----
Q 005168 179 QHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLA--GPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDV---- 252 (710)
Q Consensus 179 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~---- 252 (710)
+.+++.|.++++- ...-...+...+++|+.|+|++|++. ...... ++.++.+.+..+ .+|...|..
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETT
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhcccccc
Confidence 4578888887642 21112233223788999999999887 222222 222455555544 456666776
Q ss_pred ----CCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCcc
Q 005168 253 ----LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSG 328 (710)
Q Consensus 253 ----~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~ 328 (710)
+++|+.+++.+ .++.+.+.+|.++++|+.+++++|.+. .++..+|.++.++..+....+... .....
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~-------~~~~~ 166 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAY-------RFKNR 166 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHH-------HTSTT
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhh-------hcccc
Confidence 88999999988 888888888999999999999999888 888888888887777766543210 01112
Q ss_pred CcCccccCCCccc-eeeCccCccccccchhh-c---CCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccc
Q 005168 329 NIPGWLGNLTWLI-HIIMPENHLEGPIPVEF-C---QLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKR 403 (710)
Q Consensus 329 ~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~-~---~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 403 (710)
+...+|.++..|+ .+.+.... ..+..+ . ...+++.+.+.++-...
T Consensus 167 i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~--------------------------- 216 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNA--------------------------- 216 (329)
T ss_dssp TTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHH---------------------------
T ss_pred ccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHH---------------------------
Confidence 3345566666666 44333221 111111 1 12223333332210000
Q ss_pred cCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCcc
Q 005168 404 DLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDE 483 (710)
Q Consensus 404 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (710)
........+++|+.+++++|+++.+.+.+|.++++|+.+++.+| +..+.+.+|.++.
T Consensus 217 ---------~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~------------- 273 (329)
T 3sb4_A 217 ---------DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG------------- 273 (329)
T ss_dssp ---------HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-------------
T ss_pred ---------HHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh-------------
Confidence 00001123567777777777777666667777777777777666 5544444454433
Q ss_pred ccccceeecCCCcceeeccccceeccccccccc-EEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCcc
Q 005168 484 KFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLS-GLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKH 562 (710)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 562 (710)
+|+ .+++.+ .++.+.+.+|.++++|+++++++|.++.+.+.+|.++++
T Consensus 274 ------------------------------~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 274 ------------------------------RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP 322 (329)
T ss_dssp ------------------------------TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCC
T ss_pred ------------------------------hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcc
Confidence 454 555544 444444455555555555555555555555555555555
Q ss_pred CCEEe
Q 005168 563 IESLD 567 (710)
Q Consensus 563 L~~L~ 567 (710)
|+.++
T Consensus 323 L~~ly 327 (329)
T 3sb4_A 323 SKLIY 327 (329)
T ss_dssp CCEEE
T ss_pred hhhhc
Confidence 55543
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=4.2e-17 Score=165.01 Aligned_cols=127 Identities=23% Similarity=0.316 Sum_probs=65.7
Q ss_pred CCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCc
Q 005168 227 SHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQ 306 (710)
Q Consensus 227 ~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~ 306 (710)
.+++|+.|++++|.++ .++. + ..+++|++|++++|.+++..+ +.++++|+.|++++|.++ .++. +..+++|+
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQG-I-QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCC
T ss_pred hcCcccEEEccCCCcc-cChh-H-hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCC
Confidence 3445555555555554 3332 2 224555555555555554332 555555555555555555 3332 33455555
Q ss_pred EEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcc
Q 005168 307 FLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISG 376 (710)
Q Consensus 307 ~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~ 376 (710)
+|++++|.+.. ...+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+
T Consensus 116 ~L~L~~n~i~~-------------~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 116 SLSLEHNGISD-------------INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp EEECTTSCCCC-------------CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred EEECCCCcCCC-------------ChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 55555555442 12345555556666665555543 345556666666666665553
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=2.2e-17 Score=164.33 Aligned_cols=172 Identities=22% Similarity=0.269 Sum_probs=125.1
Q ss_pred CCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCC
Q 005168 336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP 415 (710)
Q Consensus 336 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~ 415 (710)
.+.++..++++++.+.+.. .+..+++|++|++++|.+..+ +
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-------------------------------------~ 57 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-------------------------------------A 57 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-------------------------------------T
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-------------------------------------h
Confidence 4556677777777777543 467778888888888877632 1
Q ss_pred hhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCC
Q 005168 416 DWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQ 495 (710)
Q Consensus 416 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (710)
.+..+++|++|++++|++++..+ +..+++|+.|++++|.+++..+...
T Consensus 58 -~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~----------------------------- 105 (263)
T 1xeu_A 58 -GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS----------------------------- 105 (263)
T ss_dssp -TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC-----------------------------
T ss_pred -HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc-----------------------------
Confidence 24456777777777777775444 7777788888888887764322110
Q ss_pred cceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcc
Q 005168 496 GDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 575 (710)
Q Consensus 496 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 575 (710)
++|+.|++++|.+++. ..+..+++|++|+|++|+++++ ..+..+++|+.|++++|++++
T Consensus 106 -----------------~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 106 -----------------ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp -----------------SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred -----------------CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence 2688888888888754 3578888888888888888877 367888888888888888886
Q ss_pred cCCcccccCCCCCEEeccCCcccccc
Q 005168 576 KIPHQLVELKTLEVFSVAYNNLSGEI 601 (710)
Q Consensus 576 ~~~~~l~~l~~L~~L~l~~N~l~~~~ 601 (710)
. ..+..+++|+.|++++|++.+..
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred h--HHhccCCCCCEEeCCCCcccCCc
Confidence 5 56778888888888888887753
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=2.7e-17 Score=182.52 Aligned_cols=100 Identities=20% Similarity=0.262 Sum_probs=48.3
Q ss_pred ccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcccc
Q 005168 256 LYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLG 335 (710)
Q Consensus 256 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~ 335 (710)
+..+.+..+.+....+ +..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+.. ..+ +.
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~-----------~~~--l~ 84 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTD-----------IKP--LT 84 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCC-----------CGG--GG
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCC-----------Chh--hc
Confidence 4444445554443322 344555556666666555 4442 3345555555555554432 111 44
Q ss_pred CCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCc
Q 005168 336 NLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNIS 375 (710)
Q Consensus 336 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~ 375 (710)
.+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 85 ~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 122 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGIS 122 (605)
T ss_dssp GCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCC
T ss_pred cCCCCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCC
Confidence 555555555555555432 13445555555555555544
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=7.3e-17 Score=179.00 Aligned_cols=80 Identities=29% Similarity=0.476 Sum_probs=36.4
Q ss_pred cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEecc
Q 005168 514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA 593 (710)
Q Consensus 514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~ 593 (710)
+|+.|+|++|.+++. ..+..+++|+.|+|++|.++++.| +..+++|+.|+|++|+|++. | .+..+++|+.|+++
T Consensus 132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELF 205 (605)
T ss_dssp TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECC
T ss_pred ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEcc
Confidence 444444444444432 334444444444444444444433 44444455555555544432 2 24444445555555
Q ss_pred CCcccc
Q 005168 594 YNNLSG 599 (710)
Q Consensus 594 ~N~l~~ 599 (710)
+|++.+
T Consensus 206 ~N~l~~ 211 (605)
T 1m9s_A 206 SQECLN 211 (605)
T ss_dssp SEEEEC
T ss_pred CCcCcC
Confidence 544443
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=155.09 Aligned_cols=170 Identities=22% Similarity=0.312 Sum_probs=132.0
Q ss_pred cEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeecccc
Q 005168 425 SHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIA 504 (710)
Q Consensus 425 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (710)
+.+++++|.++. +|..+ .++|++|++++|.++ .+|..|..
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~------------------------------------ 52 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSN------------------------------------ 52 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGG------------------------------------
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhc------------------------------------
Confidence 578888888884 44443 258999999999987 45566655
Q ss_pred ceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccC
Q 005168 505 YIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVEL 584 (710)
Q Consensus 505 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l 584 (710)
+++|+.|+|++|.+++..+..|.++++|++|+|++|+++++.++.|.++++|+.|+|++|+|+...+..|..+
T Consensus 53 -------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l 125 (193)
T 2wfh_A 53 -------YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDL 125 (193)
T ss_dssp -------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred -------ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcC
Confidence 4489999999999998888899999999999999999999999999999999999999999997777789999
Q ss_pred CCCCEEeccCCccccccCCCccccccCCcccccCCCCCCCCCCCCCCCCCCCCCccCCCCCCCcc
Q 005168 585 KTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNL 649 (710)
Q Consensus 585 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~ 649 (710)
++|+.|++++|+|.|+|.. .++..+....... + ....|..|...++..+.....+..
T Consensus 126 ~~L~~L~L~~N~~~C~c~l--~~l~~~~~~~~~~-~-----~~~~C~~P~~l~g~~l~~~~~~~~ 182 (193)
T 2wfh_A 126 SALSHLAIGANPLYCDCNM--QWLSDWVKSEYKE-P-----GIARCAGPGEMADKLLLTTPSKKF 182 (193)
T ss_dssp TTCCEEECCSSCEECSGGG--HHHHHHHHHSSCC-C-----SCCBEEESGGGTTCBTTTSCGGGC
T ss_pred ccccEEEeCCCCeecCCcC--HHHHHHHHhccCC-C-----CCcCcCCchHHCCCCcccCChHHe
Confidence 9999999999999998852 2332221111100 0 112588888888876666555443
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=5.4e-19 Score=195.01 Aligned_cols=122 Identities=28% Similarity=0.289 Sum_probs=80.5
Q ss_pred CccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeecc
Q 005168 423 QLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKN 502 (710)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (710)
.|+.|+|++|.+++ +|. +..+++|+.|++++|.++ .+|..++.
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------------------------- 484 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA---------------------------------- 484 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG----------------------------------
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc----------------------------------
Confidence 46777777777775 344 677777777777777776 45555544
Q ss_pred ccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCC-chhhcCCccCCEEeCcCCcCcccCCcc-
Q 005168 503 IAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI-PSTFSNLKHIESLDLSYNKLNGKIPHQ- 580 (710)
Q Consensus 503 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~- 580 (710)
+++|+.|+|++|.+++ +| .|..+++|+.|+|++|.++++. |..|..+++|+.|+|++|++++..|..
T Consensus 485 ---------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 485 ---------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp ---------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred ---------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 3367777777777765 44 6777777777777777777766 677777777777777777777554422
Q ss_pred --cccCCCCCEEec
Q 005168 581 --LVELKTLEVFSV 592 (710)
Q Consensus 581 --l~~l~~L~~L~l 592 (710)
+..+++|+.|++
T Consensus 554 ~l~~~lp~L~~L~l 567 (567)
T 1dce_A 554 RLAEMLPSVSSILT 567 (567)
T ss_dssp HHHHHCTTCSEEEC
T ss_pred HHHHHCcccCccCC
Confidence 233667776653
No 119
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=1.1e-15 Score=161.30 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=58.3
Q ss_pred cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCC-CCCEEec
Q 005168 514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK-TLEVFSV 592 (710)
Q Consensus 514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~-~L~~L~l 592 (710)
+|+.+++.+ .++.+...+|.++++|+.++|..+ ++.+...+|.++ +|+.+++++|.+....+..|..++ .++.+.+
T Consensus 301 ~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 301 KLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp TCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred cCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 566666653 355556667777888888888554 677777788888 888888888877766667777774 6778887
Q ss_pred cCCccc
Q 005168 593 AYNNLS 598 (710)
Q Consensus 593 ~~N~l~ 598 (710)
..+.+.
T Consensus 378 p~~~~~ 383 (401)
T 4fdw_A 378 PAESVE 383 (401)
T ss_dssp CGGGHH
T ss_pred CHHHHH
Confidence 777654
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.1e-16 Score=152.15 Aligned_cols=132 Identities=17% Similarity=0.293 Sum_probs=83.8
Q ss_pred hhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcc
Q 005168 418 IGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGD 497 (710)
Q Consensus 418 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (710)
+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..
T Consensus 62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~----------------------------- 110 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG----------------------------- 110 (197)
T ss_dssp GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT-----------------------------
T ss_pred HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC-----------------------------
Confidence 334555666666666444 2234556666666666666666545554444
Q ss_pred eeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCcc-CCCCCchhhcCCccCCEEeCcCCcCccc
Q 005168 498 FTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNN-LTGLIPSTFSNLKHIESLDLSYNKLNGK 576 (710)
Q Consensus 498 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~i~~~ 576 (710)
+++|+.|++++|.+++..+..+..+++|++|++++|. ++.+ + .+..+++|++|++++|+++.
T Consensus 111 --------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~- 173 (197)
T 4ezg_A 111 --------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD- 173 (197)
T ss_dssp --------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC-
T ss_pred --------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC-
Confidence 2366666666666666566667777777777777776 6655 2 57777778888888887774
Q ss_pred CCcccccCCCCCEEeccCCccc
Q 005168 577 IPHQLVELKTLEVFSVAYNNLS 598 (710)
Q Consensus 577 ~~~~l~~l~~L~~L~l~~N~l~ 598 (710)
++ .+..+++|+.|++++|++.
T Consensus 174 ~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 174 YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CT-TGGGCSSCCEEEECBC---
T ss_pred hH-HhccCCCCCEEEeeCcccC
Confidence 33 5677777888888887765
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.3e-16 Score=151.51 Aligned_cols=154 Identities=18% Similarity=0.276 Sum_probs=107.3
Q ss_pred cCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccC
Q 005168 335 GNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSI 414 (710)
Q Consensus 335 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~ 414 (710)
..+++|++|++++|.+.. .+ .+..+++|++|++++|.+..
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~-------------------------------------- 80 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN-------------------------------------- 80 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--------------------------------------
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--------------------------------------
Confidence 445556666666665552 22 45556666666666654331
Q ss_pred ChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCC
Q 005168 415 PDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGP 494 (710)
Q Consensus 415 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (710)
+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..
T Consensus 81 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~-------------------------- 134 (197)
T 4ezg_A 81 YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-------------------------- 134 (197)
T ss_dssp CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT--------------------------
T ss_pred chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh--------------------------
Confidence 123556778888888888887666777888888888888888887655555544
Q ss_pred CcceeeccccceecccccccccEEECcCCc-CCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcC
Q 005168 495 QGDFTTKNIAYIYQGKVLSLLSGLYLSCNK-LIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKL 573 (710)
Q Consensus 495 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i 573 (710)
+++|+.|++++|. ++ ..+ .+..+++|++|++++|.++++. .+..+++|++|++++|+|
T Consensus 135 -----------------l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 135 -----------------LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp -----------------CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred -----------------CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 3478888888887 55 344 6888999999999999999864 788899999999999988
Q ss_pred cc
Q 005168 574 NG 575 (710)
Q Consensus 574 ~~ 575 (710)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 63
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=1.5e-16 Score=150.37 Aligned_cols=155 Identities=23% Similarity=0.280 Sum_probs=115.5
Q ss_pred CccEEecCCCcccccCCc-ccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeec
Q 005168 423 QLSHLILGHNNLEGEVPV-QLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTK 501 (710)
Q Consensus 423 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (710)
++++|++++|++++..+. .|..+++|++|++++|.+++..|..|.++.
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------------------------------- 78 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS------------------------------- 78 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-------------------------------
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-------------------------------
Confidence 788888888888766654 478888888888888888887787776643
Q ss_pred cccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccc
Q 005168 502 NIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQL 581 (710)
Q Consensus 502 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l 581 (710)
+|+.|+|++|++++..+..|.++++|++|+|++|+++++.|+.|..+++|++|++++|++.+..+-..
T Consensus 79 ------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~ 146 (192)
T 1w8a_A 79 ------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146 (192)
T ss_dssp ------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred ------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH
Confidence 88889999998888888889999999999999999999999999999999999999999987655221
Q ss_pred ccCCCCCEEeccCCccccccCCCccccccCCcccccCCCCCCC
Q 005168 582 VELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCG 624 (710)
Q Consensus 582 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~ 624 (710)
. ...++...+.++...|..|..+.. ....++..+.+.|.
T Consensus 147 ~-~~~l~~~~~~~~~~~C~~P~~l~~---~~l~~l~~~~~~C~ 185 (192)
T 1w8a_A 147 F-AEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHSEFKCS 185 (192)
T ss_dssp H-HHHHHHHCCSGGGCBBCSSTTTTT---SBGGGSCTTTCCCC
T ss_pred H-HHHHHHcCCCCCCCCCCCChHHcC---CChhhCcHhhcCcC
Confidence 0 011222345566677776764432 33334555556664
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=2.1e-15 Score=158.93 Aligned_cols=266 Identities=14% Similarity=0.137 Sum_probs=152.5
Q ss_pred CCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcE
Q 005168 228 HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQF 307 (710)
Q Consensus 228 ~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~ 307 (710)
+..++.+.+.. .++ .++...|... +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+. .++..+|.++++|+.
T Consensus 112 ~~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred cCCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence 45666666653 454 5555555533 6777776655 555666667664 577777764 455 666667777777777
Q ss_pred EEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCc
Q 005168 308 LMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSI 387 (710)
Q Consensus 308 L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L 387 (710)
++++.|.+.. +...+|. +.+|+.+.+.++ +..+...+|.++++|+.+++..+ +..+...+|...+|
T Consensus 185 l~l~~n~l~~-----------I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L 250 (401)
T 4fdw_A 185 ADLSKTKITK-----------LPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGI 250 (401)
T ss_dssp EECTTSCCSE-----------ECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCC
T ss_pred eecCCCcceE-----------echhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCc
Confidence 7766665543 3344454 466777776633 55556666777777777777653 55555666655556
Q ss_pred ceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCccc-----ccCCcccCCCCCCCEEEccCCcccccC
Q 005168 388 EQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLE-----GEVPVQLCELNQLQLLDLSNNSLHGSI 462 (710)
Q Consensus 388 ~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~ 462 (710)
+.+.+..+ + ..+-+.+|.++++|+.+.+.+|.+. .+.+.+|.++++|+.+++.+ .+..+.
T Consensus 251 ~~i~lp~~-i-------------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~ 315 (401)
T 4fdw_A 251 TTVKLPNG-V-------------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG 315 (401)
T ss_dssp SEEEEETT-C-------------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC
T ss_pred cEEEeCCC-c-------------cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh
Confidence 66655211 1 1133455556666666666555443 34445566666666666653 344444
Q ss_pred CCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEE
Q 005168 463 PPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTL 542 (710)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 542 (710)
..+|.++. +|+.++|.++ ++.+...+|.++ +|+.+
T Consensus 316 ~~aF~~c~-------------------------------------------~L~~l~lp~~-l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 316 QGLLGGNR-------------------------------------------KVTQLTIPAN-VTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp TTTTTTCC-------------------------------------------SCCEEEECTT-CCEECTTSSSSS-CCCEE
T ss_pred hhhhcCCC-------------------------------------------CccEEEECcc-ccEEcHHhCCCC-CCCEE
Confidence 45554433 5666666433 444555566666 66666
Q ss_pred eCCCccCCCCCchhhcCCc-cCCEEeCcCCcCc
Q 005168 543 NLSYNNLTGLIPSTFSNLK-HIESLDLSYNKLN 574 (710)
Q Consensus 543 ~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~i~ 574 (710)
++++|.+..+.+.+|.+++ +++.|++..+.+.
T Consensus 351 ~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 351 KVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp EECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 6666666655555666553 5566666555443
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=1.5e-18 Score=191.35 Aligned_cols=215 Identities=23% Similarity=0.200 Sum_probs=148.5
Q ss_pred cCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCe--eeccCccCccCcCccccCCCccceee-CccCccc
Q 005168 275 GNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEG--LYLTNNSLSGNIPGWLGNLTWLIHII-MPENHLE 351 (710)
Q Consensus 275 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~--l~l~~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~ 351 (710)
..+++|+.|+|++|++. .+|..+. .+++|+.|++++|..... ..+..+...+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~-~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELE-SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHH-HHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 45677888888888887 7777765 577888887766541100 01112233445667777778888777 5555432
Q ss_pred cccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCC
Q 005168 352 GPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGH 431 (710)
Q Consensus 352 ~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 431 (710)
.|+.+.+++|.+..+.+ ..|+.|++++|.++ .+|. +..+++|+.|+|++
T Consensus 424 -----------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~--------------~lp~-~~~l~~L~~L~Ls~ 472 (567)
T 1dce_A 424 -----------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLT--------------VLCH-LEQLLLVTHLDLSH 472 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCS--------------SCCC-GGGGTTCCEEECCS
T ss_pred -----------hhhhhhhhcccccccCc-----cCceEEEecCCCCC--------------CCcC-ccccccCcEeecCc
Confidence 22223333444433221 13555555444443 2444 77788999999999
Q ss_pred CcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccc
Q 005168 432 NNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKV 511 (710)
Q Consensus 432 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (710)
|.++ .+|..++.+++|+.|+|++|.+++ +| .++.
T Consensus 473 N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~------------------------------------------- 506 (567)
T 1dce_A 473 NRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVAN------------------------------------------- 506 (567)
T ss_dssp SCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTT-------------------------------------------
T ss_pred cccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCC-------------------------------------------
Confidence 9998 677889999999999999999986 44 5544
Q ss_pred cccccEEECcCCcCCCCC-CccccccCCCCEEeCCCccCCCCCch---hhcCCccCCEEeC
Q 005168 512 LSLLSGLYLSCNKLIGHI-PPQIGNLTRIQTLNLSYNNLTGLIPS---TFSNLKHIESLDL 568 (710)
Q Consensus 512 l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L 568 (710)
+++|+.|+|++|.+++.. |..|..+++|+.|+|++|.++++++. .+..+++|+.|++
T Consensus 507 l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 448999999999999877 89999999999999999999988653 3455889999875
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=6.7e-16 Score=153.64 Aligned_cols=59 Identities=27% Similarity=0.343 Sum_probs=34.5
Q ss_pred cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCccc
Q 005168 514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGK 576 (710)
Q Consensus 514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~ 576 (710)
+|+.|++++|++++. + .+..+++|++|+|++|.++++ ..+..+++|+.|++++|++...
T Consensus 129 ~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 129 NLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 444444444444432 1 455666666666666666665 5566666777777777766643
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=144.02 Aligned_cols=114 Identities=25% Similarity=0.397 Sum_probs=106.2
Q ss_pred ccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEec
Q 005168 513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSV 592 (710)
Q Consensus 513 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l 592 (710)
+.++.|++++|.++ .+|..|.++++|+.|+|++|.|+++.+..|.++++|++|+|++|+|++..|..|..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 47999999999998 56789999999999999999999999999999999999999999999988889999999999999
Q ss_pred cCCccccccCCCccccccCCcccccCCCCCCCCCC
Q 005168 593 AYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPL 627 (710)
Q Consensus 593 ~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~ 627 (710)
++|.++...+..+..+..+..+.+.+|||.|+|..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 99999987777778888999999999999999764
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.63 E-value=9.9e-15 Score=154.64 Aligned_cols=309 Identities=12% Similarity=0.101 Sum_probs=154.3
Q ss_pred hcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCC
Q 005168 202 ENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQ 281 (710)
Q Consensus 202 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~ 281 (710)
.++.+|+++.+.. .++.+...+|.++++|+.+++.++ ++ .++...|..+.+|+.+.+..+ +..+...+|.++..+.
T Consensus 68 ~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 68 QGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred hCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 3444444444432 233333344444444444444322 33 334444433444444433322 2223334444443222
Q ss_pred EEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCC
Q 005168 282 LLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQL 361 (710)
Q Consensus 282 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 361 (710)
...... .. .+...+|.++++|+.+.+..+... +...+|.++++|+.+.+..+ +..+...+|.++
T Consensus 144 ~~~~~~--~~-~i~~~aF~~c~~L~~i~l~~~~~~------------I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~ 207 (394)
T 4fs7_A 144 ITIPEG--VT-VIGDEAFATCESLEYVSLPDSMET------------LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC 207 (394)
T ss_dssp EECCTT--CC-EECTTTTTTCTTCCEEECCTTCCE------------ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred cccCcc--cc-ccchhhhcccCCCcEEecCCccce------------eccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence 222111 11 333444445555555544332111 22334455555555555433 332334445555
Q ss_pred CCCCEEECCCCcCcccCCCCCCCCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcc
Q 005168 362 YSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQ 441 (710)
Q Consensus 362 ~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 441 (710)
..|+.+.+..+... +....+....|+.+.+.... ...-..+|.++..++.+.+..+... +...+
T Consensus 208 ~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~--------------~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~ 271 (394)
T 4fs7_A 208 ILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSF--------------TELGKSVFYGCTDLESISIQNNKLR-IGGSL 271 (394)
T ss_dssp TTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTC--------------CEECSSTTTTCSSCCEEEECCTTCE-ECSCT
T ss_pred cccceeecCCCceE-eehhhcccCCCceEEECCCc--------------eecccccccccccceeEEcCCCcce-eeccc
Confidence 55555554433221 22333334444444432211 0122334555666666666655433 44555
Q ss_pred cCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECc
Q 005168 442 LCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLS 521 (710)
Q Consensus 442 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 521 (710)
|..+..++.+....+.+ ....|.. ..+|+.+.+.
T Consensus 272 F~~~~~l~~~~~~~~~i---~~~~F~~-------------------------------------------~~~L~~i~l~ 305 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIV---PEKTFYG-------------------------------------------CSSLTEVKLL 305 (394)
T ss_dssp TTTCTTCCEEEECSSEE---CTTTTTT-------------------------------------------CTTCCEEEEC
T ss_pred cccccccceeccCceee---ccccccc-------------------------------------------cccccccccc
Confidence 66666666666654432 1223333 2366777765
Q ss_pred CCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCC
Q 005168 522 CNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYN 595 (710)
Q Consensus 522 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N 595 (710)
++ ++.+...+|.++++|+.++|.++ ++.+...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 44 55456677888888888888644 77777778888888888888766 66566677888888888877654
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=2.8e-15 Score=139.65 Aligned_cols=133 Identities=23% Similarity=0.254 Sum_probs=113.3
Q ss_pred ccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccc
Q 005168 424 LSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNI 503 (710)
Q Consensus 424 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (710)
.+.+++++++++.. |..+ .++|+.|++++|.+++..+..|..
T Consensus 9 ~~~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~----------------------------------- 50 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDK----------------------------------- 50 (177)
T ss_dssp TTEEECCSSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTT-----------------------------------
T ss_pred CCEEEecCCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcC-----------------------------------
Confidence 56788888888743 3332 368899999999988766666655
Q ss_pred cceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccccc
Q 005168 504 AYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 583 (710)
Q Consensus 504 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 583 (710)
+++|+.|++++|.+++..+..|..+++|++|+|++|.++++++..|..+++|++|++++|++++..++.+..
T Consensus 51 --------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 122 (177)
T 2o6r_A 51 --------LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122 (177)
T ss_dssp --------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred --------cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcC
Confidence 348999999999999877788899999999999999999999989999999999999999999777777888
Q ss_pred CCCCCEEeccCCccccccC
Q 005168 584 LKTLEVFSVAYNNLSGEIL 602 (710)
Q Consensus 584 l~~L~~L~l~~N~l~~~~~ 602 (710)
+++|+.|++++|++.|.++
T Consensus 123 l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 123 LTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTCCEEECCSSCBCCCHH
T ss_pred CcccCEEEecCCCeeccCc
Confidence 9999999999999999886
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=1.1e-16 Score=182.41 Aligned_cols=112 Identities=23% Similarity=0.232 Sum_probs=63.8
Q ss_pred cCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccC
Q 005168 269 SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPEN 348 (710)
Q Consensus 269 ~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 348 (710)
..+..|..++.|+.|+|++|.+. .+|..++ ++++|++|+|++|.+. .+|..|..+++|++|+|++|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~------------~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT------------ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS------------CCCGGGGGGTTCCEEECTTS
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc------------ccChhhhCCCCCCEEeCcCC
Confidence 44566777777777777777776 6776666 5677777766666654 24556666666666666666
Q ss_pred ccccccchhhcCCCCCCEEECCCCcCcccCCCCCCCCCcceEEccCc
Q 005168 349 HLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKN 395 (710)
Q Consensus 349 ~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~~~L~~L~l~~n 395 (710)
.++ .+|..|..+++|++|+|++|.+..++.....+.+|+.|++++|
T Consensus 281 ~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 281 RLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred cCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence 666 4466666666666666666666533322111444444433333
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=1.9e-16 Score=180.32 Aligned_cols=113 Identities=21% Similarity=0.239 Sum_probs=55.9
Q ss_pred cCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeec
Q 005168 413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE 492 (710)
Q Consensus 413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (710)
.+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+....
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~---------------------- 340 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS---------------------- 340 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH----------------------
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcc----------------------
Confidence 44566777888888888888887 5566688888888888888888877776654322
Q ss_pred CCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCc--------cCCCCCchhhcCCccCC
Q 005168 493 GPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYN--------NLTGLIPSTFSNLKHIE 564 (710)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n--------~l~~~~~~~~~~l~~L~ 564 (710)
.....++|++|.+++.+|.. |+.|++++| .+.+..+..+..+..++
T Consensus 341 --------------------~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~ 394 (727)
T 4b8c_D 341 --------------------VTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRT 394 (727)
T ss_dssp --------------------HHHHHHHHHHCCCCCCCCCC----------------------------------------
T ss_pred --------------------hhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccc
Confidence 01223677788887766653 445666666 34444444445555555
Q ss_pred EEeCcCCcCc
Q 005168 565 SLDLSYNKLN 574 (710)
Q Consensus 565 ~L~Ls~N~i~ 574 (710)
...+++|-+.
T Consensus 395 ~~~ls~Nil~ 404 (727)
T 4b8c_D 395 FTVLSYNTLC 404 (727)
T ss_dssp -------CCC
T ss_pred eeeeeccccc
Confidence 5666666553
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=3.5e-15 Score=137.71 Aligned_cols=134 Identities=22% Similarity=0.246 Sum_probs=106.0
Q ss_pred CCCccEEecCCCccc-ccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCccee
Q 005168 421 LSQLSHLILGHNNLE-GEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFT 499 (710)
Q Consensus 421 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (710)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 69 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK------------------------------- 69 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-------------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-------------------------------
Confidence 367888888888887 56677778888888888888887754 44433
Q ss_pred eccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCc-hhhcCCccCCEEeCcCCcCcccCC
Q 005168 500 TKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIP-STFSNLKHIESLDLSYNKLNGKIP 578 (710)
Q Consensus 500 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~i~~~~~ 578 (710)
+++|+.|++++|.+++..|..+..+++|+.|+|++|.++++.. ..+..+++|+.|++++|++++..+
T Consensus 70 ------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 70 ------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp ------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred ------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 4478888888888887777777788899999999998887643 678888899999999998886555
Q ss_pred ---cccccCCCCCEEeccCCcccc
Q 005168 579 ---HQLVELKTLEVFSVAYNNLSG 599 (710)
Q Consensus 579 ---~~l~~l~~L~~L~l~~N~l~~ 599 (710)
..+..+++|+.|++++|++..
T Consensus 138 ~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 138 YRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHHHHHHhCccCcEecCCCCChhh
Confidence 478888899999998887754
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=3.4e-15 Score=134.72 Aligned_cols=129 Identities=22% Similarity=0.245 Sum_probs=107.9
Q ss_pred CCCccEEecCCCccc-ccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCccee
Q 005168 421 LSQLSHLILGHNNLE-GEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFT 499 (710)
Q Consensus 421 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (710)
.++|+.|++++|.++ +..|..+..+++|+.|++++|.+++. ..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 62 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK------------------------------- 62 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence 368999999999998 67777888999999999999988755 44433
Q ss_pred eccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCC-chhhcCCccCCEEeCcCCcCcccCC
Q 005168 500 TKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLI-PSTFSNLKHIESLDLSYNKLNGKIP 578 (710)
Q Consensus 500 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~i~~~~~ 578 (710)
+++|+.|++++|.+++..|..+..+++|++|++++|.++++. +..+..+++|++|++++|++++..+
T Consensus 63 ------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 63 ------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp ------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred ------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 458999999999999878888888999999999999998763 4788899999999999999987665
Q ss_pred ---cccccCCCCCEEeccC
Q 005168 579 ---HQLVELKTLEVFSVAY 594 (710)
Q Consensus 579 ---~~l~~l~~L~~L~l~~ 594 (710)
..+..+++|+.|++++
T Consensus 131 ~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 131 YRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHHHHHHHCTTCCEETTBC
T ss_pred HHHHHHHHCCCcccccCCC
Confidence 5788899999998864
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=7.3e-14 Score=147.98 Aligned_cols=328 Identities=14% Similarity=0.126 Sum_probs=216.4
Q ss_pred hhccCCCCCCEEEccCCcCcccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCChhhhhcC
Q 005168 174 KFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVL 253 (710)
Q Consensus 174 ~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~ 253 (710)
.++..+.+|+.+.+..+ ++ .++...|.++++|+.+++.++ +..+...+|.++.+|+.+.+..+ +. .+....|...
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~~ 139 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKGC 139 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTC
T ss_pred HHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeecc
Confidence 34556677777777533 33 333444567778888777643 55555567777778877766543 44 4455555434
Q ss_pred CCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCcc
Q 005168 254 PSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGW 333 (710)
Q Consensus 254 ~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~ 333 (710)
.. ...... ..+..+...+|.++++|+.+.+..+ +. .++..+|.++.+|+.+.+..+ +. .+...+
T Consensus 140 ~~-~~~~~~-~~~~~i~~~aF~~c~~L~~i~l~~~-~~-~I~~~~F~~c~~L~~i~l~~~-~~-----------~I~~~~ 203 (394)
T 4fs7_A 140 DF-KEITIP-EGVTVIGDEAFATCESLEYVSLPDS-ME-TLHNGLFSGCGKLKSIKLPRN-LK-----------IIRDYC 203 (394)
T ss_dssp CC-SEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCBCCCCTT-CC-----------EECTTT
T ss_pred cc-cccccC-ccccccchhhhcccCCCcEEecCCc-cc-eeccccccCCCCceEEEcCCC-ce-----------EeCchh
Confidence 33 333222 2233355667888888888888755 34 677888888888888877654 22 134567
Q ss_pred ccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC-CCCcceEEccCccccccccccCCCccCcc
Q 005168 334 LGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNG 412 (710)
Q Consensus 334 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~ 412 (710)
|.++..|+.+.+..+... ....+....+|+.+.+... +..+...+|. +..++.+.+..+...
T Consensus 204 F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-------------- 266 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-------------- 266 (394)
T ss_dssp TTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE--------------
T ss_pred hccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce--------------
Confidence 778888888777665433 2233344567888877643 3445555555 677777766554322
Q ss_pred cCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeec
Q 005168 413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE 492 (710)
Q Consensus 413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (710)
.....|..+..++.+....+.+ ...+|..+.+|+.+.+.++ +..+...+|.++.
T Consensus 267 i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~---------------------- 320 (394)
T 4fs7_A 267 IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCT---------------------- 320 (394)
T ss_dssp ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCT----------------------
T ss_pred eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCC----------------------
Confidence 3445677778888887776543 3446888889999988765 5555566676654
Q ss_pred CCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCc
Q 005168 493 GPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNK 572 (710)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 572 (710)
+|+.+++.++ ++.+...+|.++++|+.+++..+ ++.+...+|.++++|+.+++..+
T Consensus 321 ---------------------~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~- 376 (394)
T 4fs7_A 321 ---------------------SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR- 376 (394)
T ss_dssp ---------------------TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-
T ss_pred ---------------------CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-
Confidence 7888888654 66667788999999999999877 88888899999999999999765
Q ss_pred CcccCCcccccCCCCCEE
Q 005168 573 LNGKIPHQLVELKTLEVF 590 (710)
Q Consensus 573 i~~~~~~~l~~l~~L~~L 590 (710)
+. .+..+|.++++|+.+
T Consensus 377 ~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 377 LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp GG-GGGGGBCTTCEEEEE
T ss_pred CE-EhhheecCCCCCcEE
Confidence 33 335567777777654
No 134
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=2e-14 Score=132.62 Aligned_cols=137 Identities=23% Similarity=0.171 Sum_probs=97.9
Q ss_pred CCCCCEEEcccCcCc-ccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCc
Q 005168 228 HKRLGILDISNNNIR-GHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQ 306 (710)
Q Consensus 228 ~~~L~~L~ls~n~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~ 306 (710)
.++|++|++++|.++ +.+|..+.. +++|++|++++|.+++. ..|..+++|++|++++|.+++.+| ..+..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCC
Confidence 356777777777776 556655433 67778888888777755 567778888888888888873344 4444578888
Q ss_pred EEEccCCCCcCeeeccCccCccCc-CccccCCCccceeeCccCccccccc---hhhcCCCCCCEEECCCCcCcccCC
Q 005168 307 FLMLSNNSLKEGLYLTNNSLSGNI-PGWLGNLTWLIHIIMPENHLEGPIP---VEFCQLYSLQILDISDNNISGSLP 379 (710)
Q Consensus 307 ~L~Ls~n~l~~~l~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~ls~n~i~~~~~ 379 (710)
+|++++|.+.. .. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+...+.
T Consensus 99 ~L~Ls~N~l~~-----------~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 99 HLNLSGNKLKD-----------ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp EEECBSSSCCS-----------SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EEeccCCccCc-----------chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 88887777653 21 2567788888888888888886655 578888888888888888775543
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=4.4e-14 Score=130.27 Aligned_cols=91 Identities=25% Similarity=0.287 Sum_probs=86.2
Q ss_pred ccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEec
Q 005168 513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSV 592 (710)
Q Consensus 513 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l 592 (710)
+.++.|+|++|.+++..|..|.++++|++|+|++|+|+++.++.|.++++|++|+|++|+|++..++.|..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 37999999999999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred cCCccccccCC
Q 005168 593 AYNNLSGEILE 603 (710)
Q Consensus 593 ~~N~l~~~~~~ 603 (710)
++|+|.|.|+.
T Consensus 110 ~~N~~~c~c~~ 120 (170)
T 3g39_A 110 LNNPWDCACSD 120 (170)
T ss_dssp CSSCBCTTBGG
T ss_pred CCCCCCCCchh
Confidence 99999999863
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=8.3e-14 Score=129.64 Aligned_cols=130 Identities=23% Similarity=0.258 Sum_probs=89.6
Q ss_pred CCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEc
Q 005168 231 LGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLML 310 (710)
Q Consensus 231 L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L 310 (710)
.+.+++++++++ .+|..++ ++|++|++++|.++++.+..|.++++|++|++++|.++ .++...|.++++|++|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence 356777777776 6665443 47777777777777666666777777777777777777 666666667777777777
Q ss_pred cCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcc
Q 005168 311 SNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISG 376 (710)
Q Consensus 311 s~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~ 376 (710)
++|.+.. ..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+
T Consensus 84 ~~N~l~~-----------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 84 HENKLQS-----------LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccc-----------cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6666553 444556667777777777777776656566677777777777776653
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=5.9e-14 Score=126.52 Aligned_cols=129 Identities=23% Similarity=0.230 Sum_probs=87.4
Q ss_pred CCCCCEEEcccCcCc-ccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCc
Q 005168 228 HKRLGILDISNNNIR-GHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQ 306 (710)
Q Consensus 228 ~~~L~~L~ls~n~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~ 306 (710)
.+++++|++++|.++ +.+|..+.. +++|++|++++|.+++. ..+.++++|++|++++|.+++.+|. .+.++++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCC
Confidence 356667777777766 456654333 66777777777777655 5677777888888888877733443 444577788
Q ss_pred EEEccCCCCcCeeeccCccCccC-cCccccCCCccceeeCccCccccccc---hhhcCCCCCCEEECCC
Q 005168 307 FLMLSNNSLKEGLYLTNNSLSGN-IPGWLGNLTWLIHIIMPENHLEGPIP---VEFCQLYSLQILDISD 371 (710)
Q Consensus 307 ~L~Ls~n~l~~~l~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~ls~ 371 (710)
+|++++|.+.. . .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 92 ~L~ls~N~i~~-----------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKD-----------LSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCS-----------HHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCC-----------hHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 87777776653 1 22567777888888888887776655 5677788888887763
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=4.4e-14 Score=131.32 Aligned_cols=136 Identities=23% Similarity=0.263 Sum_probs=109.8
Q ss_pred CccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCC
Q 005168 224 PIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV 303 (710)
Q Consensus 224 ~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~ 303 (710)
.+..+.+|++|++++|+++ .+|. +....++|++|++++|.+++. ..|.++++|++|++++|.++ .+|..+|.+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence 3556788899999999888 6654 444455999999999999876 57889999999999999998 78877777899
Q ss_pred CCcEEEccCCCCcCeeeccCccCccCcCc--cccCCCccceeeCccCccccccch---hhcCCCCCCEEECCCCcCcc
Q 005168 304 NLQFLMLSNNSLKEGLYLTNNSLSGNIPG--WLGNLTWLIHIIMPENHLEGPIPV---EFCQLYSLQILDISDNNISG 376 (710)
Q Consensus 304 ~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~ls~n~i~~ 376 (710)
+|++|++++|.+.. +|. .+..+++|+.|++++|.+....+. .+..+++|+.|++++|....
T Consensus 89 ~L~~L~L~~N~i~~------------~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 89 DLTELILTNNSLVE------------LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TCCEEECCSCCCCC------------GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCEEECCCCcCCc------------chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999998888763 344 688889999999999998854332 48889999999999887753
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=4.4e-14 Score=131.31 Aligned_cols=134 Identities=19% Similarity=0.169 Sum_probs=107.3
Q ss_pred hhcCCCccEEecCCCcccccCCcccCCC-CCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCc
Q 005168 418 IGELSQLSHLILGHNNLEGEVPVQLCEL-NQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQG 496 (710)
Q Consensus 418 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (710)
+..+++|++|++++|.++.. +. +..+ ++|+.|++++|.+++. ..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~---------------------------- 62 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPL---------------------------- 62 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCC----------------------------
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--ccccc----------------------------
Confidence 45578899999999998854 44 4444 4899999999998864 34433
Q ss_pred ceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCc-hhhcCCccCCEEeCcCCcCcc
Q 005168 497 DFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIP-STFSNLKHIESLDLSYNKLNG 575 (710)
Q Consensus 497 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~i~~ 575 (710)
+++|+.|++++|.+++..+..|..+++|++|+|++|.++.+.+ ..+..+++|+.|++++|++.
T Consensus 63 ---------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~- 126 (176)
T 1a9n_A 63 ---------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT- 126 (176)
T ss_dssp ---------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-
T ss_pred ---------------CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-
Confidence 4589999999999997766667899999999999999987643 47888999999999999998
Q ss_pred cCCc----ccccCCCCCEEeccCCcccc
Q 005168 576 KIPH----QLVELKTLEVFSVAYNNLSG 599 (710)
Q Consensus 576 ~~~~----~l~~l~~L~~L~l~~N~l~~ 599 (710)
.+|. .+..+++|+.||+++|....
T Consensus 127 ~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 127 NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 4555 48889999999999998764
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.49 E-value=1.8e-12 Score=137.23 Aligned_cols=307 Identities=11% Similarity=0.111 Sum_probs=143.4
Q ss_pred CCcEEEccCCcccccCccCccCCCCCCEEEcccCc---CcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCE
Q 005168 206 KLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNN---IRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQL 282 (710)
Q Consensus 206 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~---i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~ 282 (710)
.|+++.+.. .++.+-..+|.++.+|+.+.+..+. ++ .++...|..+.+|+.+.+..+ ++.+...+|.++.+|+.
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 355555543 2444444556666666666665442 43 444455544555555555433 33345556666666666
Q ss_pred EeccCCccCCcCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCC
Q 005168 283 LDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLY 362 (710)
Q Consensus 283 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 362 (710)
+.+..+ +. .++..+|.++.+|+.+.+..+- . .+...+|.+ ..|+.+.+..+- ......+|.++.
T Consensus 142 i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~~-~-----------~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~ 205 (394)
T 4gt6_A 142 VTIPEG-VT-SVADGMFSYCYSLHTVTLPDSV-T-----------AIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECF 205 (394)
T ss_dssp EECCTT-CC-EECTTTTTTCTTCCEEECCTTC-C-----------EECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCT
T ss_pred ccccce-ee-eecccceeccccccccccccee-e-----------Eeccccccc-cceeEEEECCcc-cccccchhhhcc
Confidence 666533 33 4555566566666666554331 1 122333432 345555554332 223445555666
Q ss_pred CCCEEECCCCcCcccCCCCCCCC--------------CcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEe
Q 005168 363 SLQILDISDNNISGSLPSCFHPL--------------SIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLI 428 (710)
Q Consensus 363 ~L~~L~ls~n~i~~~~~~~~~~~--------------~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~ 428 (710)
+++................+... .+..+.+. +.+...-..+|.++..|+.+.
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip--------------~~v~~i~~~aF~~c~~L~~i~ 271 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP--------------NGVARIETHAFDSCAYLASVK 271 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC--------------TTEEEECTTTTTTCSSCCEEE
T ss_pred ccceecccccccccccceeecccccccccccccccccccceEEcC--------------CcceEcccceeeecccccEEe
Confidence 66655554443332211111100 01111000 111112234555666666666
Q ss_pred cCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceec
Q 005168 429 LGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQ 508 (710)
Q Consensus 429 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (710)
+.++... +...+|.++++|+.+.+. +.+..+...+|.++.
T Consensus 272 lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~-------------------------------------- 311 (394)
T 4gt6_A 272 MPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCI-------------------------------------- 311 (394)
T ss_dssp CCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCT--------------------------------------
T ss_pred cccccce-ecCcccccccccccccCC-CcccccCceeecCCC--------------------------------------
Confidence 6544332 444556666666666664 234434444454433
Q ss_pred ccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCC
Q 005168 509 GKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLE 588 (710)
Q Consensus 509 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~ 588 (710)
+|+.+++..+ ++.+...+|.++++|+++.+..+ ++.+...+|.++++|+.+++.++.... .++.....|+
T Consensus 312 -----~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~ 381 (394)
T 4gt6_A 312 -----SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQ 381 (394)
T ss_dssp -----TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-
T ss_pred -----CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCC
Confidence 5555555433 44344555666666666666433 555555666666666666666554331 2344455555
Q ss_pred EEeccCC
Q 005168 589 VFSVAYN 595 (710)
Q Consensus 589 ~L~l~~N 595 (710)
.+.+..|
T Consensus 382 ~i~i~~~ 388 (394)
T 4gt6_A 382 NLPVAPG 388 (394)
T ss_dssp -------
T ss_pred EEEeCCC
Confidence 5555443
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=1.5e-13 Score=127.12 Aligned_cols=91 Identities=24% Similarity=0.300 Sum_probs=85.5
Q ss_pred ccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEec
Q 005168 513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSV 592 (710)
Q Consensus 513 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l 592 (710)
+.|+.|+|++|.+++..|..|.++++|++|+|++|+|+++++..|.++++|++|+|++|+|++..+..|..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 38999999999999999999999999999999999999999989999999999999999999777777999999999999
Q ss_pred cCCccccccCC
Q 005168 593 AYNNLSGEILE 603 (710)
Q Consensus 593 ~~N~l~~~~~~ 603 (710)
++|+|.|.++.
T Consensus 113 ~~N~~~c~~~~ 123 (174)
T 2r9u_A 113 YNNPWDCECRD 123 (174)
T ss_dssp CSSCBCTTBGG
T ss_pred CCCCccccccc
Confidence 99999998763
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.43 E-value=1.6e-11 Score=129.89 Aligned_cols=315 Identities=10% Similarity=0.061 Sum_probs=214.2
Q ss_pred ccccCccCccCCC-CCCEEEcccCcCcccCChhhhhcCCCccEEEccCCc---CcccCCccCcCCCCCCEEeccCCccCC
Q 005168 217 LAGPFWLPIHSHK-RLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNA---LDGSIPSSFGNMKFLQLLDLSNNQLTG 292 (710)
Q Consensus 217 ~~~~~~~~~~~~~-~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~---i~~~~~~~f~~l~~L~~L~Ls~n~l~~ 292 (710)
++.+-..+|.+++ .|+.+.+..+ ++ .+....|..+.+|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~- 126 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT- 126 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-
Confidence 3344456777775 5899998754 66 7777777778899999998763 66677888999999998888755 55
Q ss_pred cCChhhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCC
Q 005168 293 EIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDN 372 (710)
Q Consensus 293 ~i~~~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 372 (710)
.++..+|.++.+|+.+.+..+.. .+...+|..+..|+.+.+.++ +..+...+|.+ ..|+.+.+..+
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~~~------------~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~ 192 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEGVT------------SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK 192 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTTCC------------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT
T ss_pred eehhhhhhhhcccccccccceee------------eecccceecccccccccccce-eeEeccccccc-cceeEEEECCc
Confidence 78888888899999988864322 144567888888988888665 44455666654 56888888754
Q ss_pred cCcccCCCCCC-CCCcceEEccCccccccccccCCCccCcccCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEE
Q 005168 373 NISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLL 451 (710)
Q Consensus 373 ~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 451 (710)
- ..+...+|. +..+................-...+.........+.....+..+.+.. .++.+...+|.++..|+.+
T Consensus 193 ~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i 270 (394)
T 4gt6_A 193 V-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASV 270 (394)
T ss_dssp C-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEE
T ss_pred c-cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEE
Confidence 3 334455555 666666655443322110000000000000000011123344444432 3444556788999999999
Q ss_pred EccCCcccccCCCCcccccccccccCCCCCccccccceeecCCCcceeeccccceecccccccccEEECcCCcCCCCCCc
Q 005168 452 DLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPP 531 (710)
Q Consensus 452 ~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 531 (710)
.+.++.. .+...+|.++. .|+.+.+. +.++.+...
T Consensus 271 ~lp~~~~-~I~~~aF~~c~-------------------------------------------~L~~i~l~-~~i~~I~~~ 305 (394)
T 4gt6_A 271 KMPDSVV-SIGTGAFMNCP-------------------------------------------ALQDIEFS-SRITELPES 305 (394)
T ss_dssp ECCTTCC-EECTTTTTTCT-------------------------------------------TCCEEECC-TTCCEECTT
T ss_pred ecccccc-eecCccccccc-------------------------------------------ccccccCC-CcccccCce
Confidence 9876543 34455565543 78888886 456667778
Q ss_pred cccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccc
Q 005168 532 QIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLS 598 (710)
Q Consensus 532 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~ 598 (710)
+|.++.+|+.++|..+ ++.+...+|.++.+|+++.+..+ ++.+...+|.++++|+.+++.++...
T Consensus 306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 8999999999999864 78888899999999999999765 77677789999999999999988643
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=7.8e-13 Score=121.85 Aligned_cols=110 Identities=24% Similarity=0.234 Sum_probs=99.9
Q ss_pred cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEecc
Q 005168 514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA 593 (710)
Q Consensus 514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~ 593 (710)
..+.+++++|.++. +|..+ .++|++|+|++|.|+++.++.|.++++|++|+|++|+|++..+..|..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 46789999999996 55544 3899999999999999999999999999999999999998888888999999999999
Q ss_pred CCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168 594 YNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 626 (710)
Q Consensus 594 ~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 626 (710)
+|.+....+..+..+..++.+.+.+|++.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998877778889999999999999999975
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=8e-15 Score=139.25 Aligned_cols=88 Identities=27% Similarity=0.259 Sum_probs=52.9
Q ss_pred ccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCC-cccccCCCCCEEe
Q 005168 513 SLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIP-HQLVELKTLEVFS 591 (710)
Q Consensus 513 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~l~~l~~L~~L~ 591 (710)
++|+.|++++|.++ .+|..+..+++|++|+|++|+++++ ..+..+++|+.|++++|+++...+ +.+..+++|+.|+
T Consensus 70 ~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 70 ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp TTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred CCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC--CccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 35666666666665 3445555556666666666666654 246666666666666666664322 3556666666666
Q ss_pred ccCCccccccCC
Q 005168 592 VAYNNLSGEILE 603 (710)
Q Consensus 592 l~~N~l~~~~~~ 603 (710)
+++|++.+.+|.
T Consensus 147 l~~N~l~~~~~~ 158 (198)
T 1ds9_A 147 LAGNPLYNDYKE 158 (198)
T ss_dssp ECSCHHHHHHHT
T ss_pred ecCCcccccccc
Confidence 666666665543
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=9.6e-15 Score=138.70 Aligned_cols=137 Identities=23% Similarity=0.308 Sum_probs=114.2
Q ss_pred cCChhhhcCCCccEEecCCCcccccCCcccCCCCCCCEEEccCCcccccCCCCcccccccccccCCCCCccccccceeec
Q 005168 413 SIPDWIGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIE 492 (710)
Q Consensus 413 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (710)
.+|..+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~------------------------ 91 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV------------------------ 91 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH------------------------
T ss_pred hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc------------------------
Confidence 345588899999999999999996 55 7889999999999999987 44443332
Q ss_pred CCCcceeeccccceecccccccccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCc-hhhcCCccCCEEeCcCC
Q 005168 493 GPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIP-STFSNLKHIESLDLSYN 571 (710)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N 571 (710)
+++|+.|++++|.+++. | .+..+++|++|++++|.++++.+ +.+..+++|++|++++|
T Consensus 92 -------------------~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 92 -------------------ADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp -------------------HHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred -------------------CCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 45899999999999963 4 68899999999999999998754 67899999999999999
Q ss_pred cCcccCCcc----------cccCCCCCEEeccCCcccc
Q 005168 572 KLNGKIPHQ----------LVELKTLEVFSVAYNNLSG 599 (710)
Q Consensus 572 ~i~~~~~~~----------l~~l~~L~~L~l~~N~l~~ 599 (710)
++.+..|.. +..+++|+.|| +|+++.
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 998766543 78899999987 777664
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=6.7e-13 Score=138.08 Aligned_cols=113 Identities=18% Similarity=0.252 Sum_probs=94.8
Q ss_pred ccccEEECcC-CcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEe
Q 005168 513 SLLSGLYLSC-NKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFS 591 (710)
Q Consensus 513 ~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 591 (710)
++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++++|..|.++++|+.|+|++|+|++..+..+..++ |+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 3899999996 999998889999999999999999999999999999999999999999999977777777666 99999
Q ss_pred ccCCccccccC-CCccccccCCcccccCCCCCCCCC
Q 005168 592 VAYNNLSGEIL-EWTAQFATFNKSSYEGNTFLCGLP 626 (710)
Q Consensus 592 l~~N~l~~~~~-~~~~~~~~~~~~~~~~n~~~c~~~ 626 (710)
+.+|+|.|.|. .|+..+.......+..+.+.|..|
T Consensus 110 l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 110 LSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp CCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred eeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 99999999885 444444433344445566677554
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=2.3e-12 Score=119.02 Aligned_cols=109 Identities=21% Similarity=0.224 Sum_probs=97.9
Q ss_pred ccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccC
Q 005168 515 LSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAY 594 (710)
Q Consensus 515 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~ 594 (710)
-+.+++++|.++. +|..+. ++|++|+|++|.++++.|+.|.++++|++|+|++|+|++..+..|..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4689999999984 555553 8999999999999999999999999999999999999987777789999999999999
Q ss_pred CccccccCCCccccccCCcccccCCCCCCCCC
Q 005168 595 NNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 626 (710)
Q Consensus 595 N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 626 (710)
|.+....+..+..+..++.+.+.+|++.|+|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99998777668889999999999999999874
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.26 E-value=3.8e-10 Score=118.70 Aligned_cols=142 Identities=17% Similarity=0.195 Sum_probs=67.0
Q ss_pred CccCCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCC
Q 005168 224 PIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCV 303 (710)
Q Consensus 224 ~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~ 303 (710)
.+..+.+++.+.+..+ +. .++...+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +. .++..+|.++.
T Consensus 212 ~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~ 286 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCS 286 (379)
T ss_dssp TTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCT
T ss_pred ccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccccc
Confidence 3444444555444322 22 333333333445555555443 33344445555555555555432 33 45555555555
Q ss_pred CCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCccccccchhhcCCCCCCEEECCCCcCcccCCCCCC
Q 005168 304 NLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH 383 (710)
Q Consensus 304 ~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~ 383 (710)
+|+.+.+.++.+.. +...+|.++.+|+.+.+..+ +..+...+|.++.+|+.+.+..+ ++.+...+|.
T Consensus 287 ~L~~i~l~~~~i~~-----------I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~ 353 (379)
T 4h09_A 287 NLTKVVMDNSAIET-----------LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFE 353 (379)
T ss_dssp TCCEEEECCTTCCE-----------ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred ccccccccccccce-----------ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence 55555544433332 33445555555555555432 33344455666666666555433 4445555554
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.26 E-value=7.2e-10 Score=116.56 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=35.6
Q ss_pred cccEEECcCCcCCCCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcccCCccccc
Q 005168 514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVE 583 (710)
Q Consensus 514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 583 (710)
+|+.+.+.++.++.+...+|.++.+|+.+.|..+ ++.+...+|.++++|+.+.+..+ ++.+-..+|.+
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 5555555555555444555555556666655433 44455555555555655555433 33333444443
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=4.7e-11 Score=124.09 Aligned_cols=108 Identities=16% Similarity=0.224 Sum_probs=96.6
Q ss_pred cEEECcCC-cCCCCCCccccccCCCCEEeCCC-ccCCCCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEecc
Q 005168 516 SGLYLSCN-KLIGHIPPQIGNLTRIQTLNLSY-NNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVA 593 (710)
Q Consensus 516 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~ 593 (710)
..++++++ .+++ +|. +..+++|++|+|++ |.+++++++.|.++++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788888 8885 666 99999999999996 99999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCccccccCCcccccCCCCCCCCC
Q 005168 594 YNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 626 (710)
Q Consensus 594 ~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 626 (710)
+|.++...+..+..+. +..+.+.+|++.|+|.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 9999987666555544 8888999999999985
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.16 E-value=1.3e-12 Score=136.27 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=35.8
Q ss_pred cccEEECcCCcCCCC----CCccccccCCCCEEeCCCccCCCCC----chhhcCCccCCEEeCcCCcCcccCCccc
Q 005168 514 LLSGLYLSCNKLIGH----IPPQIGNLTRIQTLNLSYNNLTGLI----PSTFSNLKHIESLDLSYNKLNGKIPHQL 581 (710)
Q Consensus 514 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~i~~~~~~~l 581 (710)
+|++|+|++|.+.+. ++..+...++|++|+|++|.|+... +.++...++|++|+|++|.|+......+
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 444455555544321 1234455566677777777666432 2334445667777777777664333333
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=4.1e-12 Score=132.48 Aligned_cols=164 Identities=16% Similarity=0.111 Sum_probs=87.5
Q ss_pred CCCcEEEccCCcccccCccCc----c-CCCCCCEEEcccCcCcccCChhhhhcCCCccEEEccCCcCcccCCccC-----
Q 005168 205 TKLATLFLVNDSLAGPFWLPI----H-SHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSF----- 274 (710)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~~~~----~-~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~f----- 274 (710)
+.|+.|++++|.+.......+ . ..++|++|++++|.++......+...+++|+.|+|++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 445555555555443222211 1 225666777777766533233333345567777777777654333332
Q ss_pred cCCCCCCEEeccCCccCCcCCh----hhhcCCCCCcEEEccCCCCcCeeeccCccCccCcCccccCCCccceeeCccCcc
Q 005168 275 GNMKFLQLLDLSNNQLTGEIPE----HLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHL 350 (710)
Q Consensus 275 ~~l~~L~~L~Ls~n~l~~~i~~----~~~~~l~~L~~L~Ls~n~l~~~l~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 350 (710)
...++|++|+|++|.++ .... ..+..+++|++|+|++|.+... . ...++..+...++|++|+|++|.+
T Consensus 152 ~~~~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~------g-~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLT-AAGVAVLMEGLAGNTSVTHLSLLHTGLGDE------G-LELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp STTCCCCEEECCSSCCH-HHHHHHHHHHHHTCSSCCEEECTTSSCHHH------H-HHHHHHHGGGCSCCCEEECCSSCC
T ss_pred hcCCccceeeCCCCCCC-hHHHHHHHHHHhcCCCcCEEeCCCCCCCcH------H-HHHHHHHHhcCCCcCeEECCCCCC
Confidence 23566777777777765 2111 1123466677777776665420 0 001233455566777777777776
Q ss_pred ccc----cchhhcCCCCCCEEECCCCcCcc
Q 005168 351 EGP----IPVEFCQLYSLQILDISDNNISG 376 (710)
Q Consensus 351 ~~~----~~~~~~~l~~L~~L~ls~n~i~~ 376 (710)
++. ++..+...++|++|++++|.+..
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 643 23334455677777777776653
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=4.3e-08 Score=101.13 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=66.0
Q ss_pred ccCCCCCCEEEccCCcCc---------ccCChhHhhcCCCCcEEEccCCcccccCccCccCCCCCCEEEcccCcCcccCC
Q 005168 176 LYHQHDLEYVRLSHIKMN---------GEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIP 246 (710)
Q Consensus 176 l~~~~~L~~L~ls~~~~~---------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~ 246 (710)
+..+++|+.|.+...... +.+. .+...+|+|++|.+.++.-.. .+ .+ .+++|++|++..+.+.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l~-l~-~~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLS-IG-KK-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTCB-CC-SC-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCce-ec-cc-cCCCCcEEEEecCCCChHHH
Confidence 334567777777543221 1122 233567788888887663111 11 13 26778888877776652222
Q ss_pred hhhh-hcCCCccEEEccCC--cCccc-----CCccC--cCCCCCCEEeccCCccCCcCChhhhc--CCCCCcEEEccCCC
Q 005168 247 VEIG-DVLPSLYVFNISMN--ALDGS-----IPSSF--GNMKFLQLLDLSNNQLTGEIPEHLAV--GCVNLQFLMLSNNS 314 (710)
Q Consensus 247 ~~~~-~~~~~L~~L~L~~n--~i~~~-----~~~~f--~~l~~L~~L~Ls~n~l~~~i~~~~~~--~l~~L~~L~Ls~n~ 314 (710)
..+. ..+|+|+.|+|+.+ ...+. +...+ ..+++|++|+|++|.+.+..+..++. .+++|++|+|+.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 2222 13677777777531 11100 00111 13556666666666554222222221 24455555555544
Q ss_pred Cc
Q 005168 315 LK 316 (710)
Q Consensus 315 l~ 316 (710)
+.
T Consensus 291 L~ 292 (362)
T 2ra8_A 291 LT 292 (362)
T ss_dssp CB
T ss_pred CC
Confidence 43
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=1.4e-08 Score=104.72 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=32.9
Q ss_pred cccccEEECcCCcCCCCCCcccc---ccCCCCEEeCCCccCCCCC----chhhcCCccCCEEeCcCCcCc
Q 005168 512 LSLLSGLYLSCNKLIGHIPPQIG---NLTRIQTLNLSYNNLTGLI----PSTFSNLKHIESLDLSYNKLN 574 (710)
Q Consensus 512 l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~i~ 574 (710)
+++|+.|+|++|.+....+..+. .+++|++|+|+.|.+++.. +..+..+++|+.|+|++|.|+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 34556666655555432222221 3556666666666665431 222344566666666666655
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.25 E-value=1.1e-06 Score=81.61 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=64.3
Q ss_pred chhhccCCCCCEEECCCC-ccccc----cChhhhcCCCCCCEEeCCCCCCC------------CcccccEEecCCCccee
Q 005168 14 LSSLTHLSSLRSLNLNGN-SLEGS----IDVKEFDSLRDLEELDIGENKID------------KFVVSKELYLDDTGFKG 76 (710)
Q Consensus 14 ~~~~~~l~~L~~L~Ls~n-~i~~~----i~~~~f~~l~~L~~L~Ls~n~l~------------~l~~l~~L~L~~~~~~~ 76 (710)
...+...+.|++|+|++| .+... +. .++...++|++|+|++|.|. ..+.|++|+|++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 345667888888888888 77521 22 45667788888888888776 22344455555554442
Q ss_pred e----cCHHhhcCCCCCCEEEccCCcCCCCCCCcEEEc--ccccccccc---CcccccCCCCCcEEEccCCcccc
Q 005168 77 T----LDIREFDSFNNLEVLDMSYNKIDNLVVPQELRL--SDNHFRIPI---SLEPLFNHSRLKIFHAKNNQMNA 142 (710)
Q Consensus 77 ~----i~~~~~~~l~~L~~L~Ls~n~l~~~~~L~~L~L--~~~~l~~~~---~~~~l~~l~~L~~L~L~~n~~~~ 142 (710)
. +.. ++...+ .|++|+| ++|.+.... -...+...+.|+.|++++|.+..
T Consensus 108 ~g~~~l~~-~L~~n~----------------~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 108 SGILALVE-ALQSNT----------------SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHH-GGGGCS----------------SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHH-HHHhCC----------------CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 2 122 333344 4555555 445444211 11234556778888888887653
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.19 E-value=2.4e-07 Score=86.01 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=36.0
Q ss_pred ccCCCCEEeCCCccCCCC----CchhhcCCccCCEEeC--cCCcCccc----CCcccccCCCCCEEeccCCccc
Q 005168 535 NLTRIQTLNLSYNNLTGL----IPSTFSNLKHIESLDL--SYNKLNGK----IPHQLVELKTLEVFSVAYNNLS 598 (710)
Q Consensus 535 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L--s~N~i~~~----~~~~l~~l~~L~~L~l~~N~l~ 598 (710)
..++|++|+|++|.|+.. ...++...++|++|+| ++|.|... +.+.+...++|+.|++++|.+.
T Consensus 91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 345556666666655532 2334455556666666 56666532 2334455567777777777664
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.16 E-value=1.8e-06 Score=84.27 Aligned_cols=64 Identities=31% Similarity=0.385 Sum_probs=30.8
Q ss_pred ccCCCCEEeCCCccCCCCC--chhhcCCccCCEEeCcCCcCcccCCcccccCC--CCCEEeccCCccccc
Q 005168 535 NLTRIQTLNLSYNNLTGLI--PSTFSNLKHIESLDLSYNKLNGKIPHQLVELK--TLEVFSVAYNNLSGE 600 (710)
Q Consensus 535 ~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~--~L~~L~l~~N~l~~~ 600 (710)
++++|+.|+|++|+|+++. ++.+..+++|+.|+|++|+|++. +.+..++ +|+.|++++|++.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence 3445555555555555432 23444455555555555555533 1222222 555555555555543
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.11 E-value=4.3e-06 Score=72.17 Aligned_cols=96 Identities=16% Similarity=0.078 Sum_probs=63.4
Q ss_pred CEEeCCCccCC--CCCchhhcCCccCCEEeCcCCcCcccCCcccccCCCCCEEeccCCccccccC-CCccccccCCcccc
Q 005168 540 QTLNLSYNNLT--GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL-EWTAQFATFNKSSY 616 (710)
Q Consensus 540 ~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~~~~~~~ 616 (710)
..++-+++.++ .++ ..+. ++|++|+|++|+|+.+.++.|..+++|+.|+|++|||.|+|. .|+..|..-.....
T Consensus 11 ~~v~Cs~~~L~~~~vP-~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~ 87 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLP-TAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA 87 (130)
T ss_dssp TEEECCSSCCCTTTSC-SCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSG
T ss_pred CEEEeCCCCCccccCC-CCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccc
Confidence 36777777776 443 2232 468999999999997777888999999999999999999885 23322221111001
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCccCCCCC
Q 005168 617 EGNTFLCGLPLPICRSPATMSEASIGNER 645 (710)
Q Consensus 617 ~~n~~~c~~~~~~c~~~~~~~~~~~~~~~ 645 (710)
.. ....|..|..+++..+....
T Consensus 88 ~~-------~~~~C~~P~~l~g~~l~~l~ 109 (130)
T 3rfe_A 88 PY-------RDLRCVAPPALRGRLLPYLA 109 (130)
T ss_dssp GG-------TTCBCCBSTTTTTCBGGGCC
T ss_pred cc-------cCcEeCcChHHcCCCcccCC
Confidence 01 11258888888877655444
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=1.3e-06 Score=85.28 Aligned_cols=90 Identities=22% Similarity=0.264 Sum_probs=58.5
Q ss_pred eecCCCCCCCccch----hhccCCCCCEEECCCCcccc--ccChhhhcCCCCCCEEeCCCCCCCCc------c--cccEE
Q 005168 2 LNLSGNSFNNTILS----SLTHLSSLRSLNLNGNSLEG--SIDVKEFDSLRDLEELDIGENKIDKF------V--VSKEL 67 (710)
Q Consensus 2 L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~--~i~~~~f~~l~~L~~L~Ls~n~l~~l------~--~l~~L 67 (710)
++++.|+.. ..+. ...++++|+.|+|++|.+++ .++ ..+..+++|++|+|++|+|+.+ . +|++|
T Consensus 148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEE
T ss_pred ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCchhhhhcccCCcceE
Confidence 455666433 2222 22578999999999999884 333 5667899999999999988732 2 55666
Q ss_pred ecCCCcceeecCH------HhhcCCCCCCEEE
Q 005168 68 YLDDTGFKGTLDI------REFDSFNNLEVLD 93 (710)
Q Consensus 68 ~L~~~~~~~~i~~------~~~~~l~~L~~L~ 93 (710)
+|++|.+.+.+|. ..+..+|+|+.||
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 6666666554431 1355566666555
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=7e-06 Score=74.08 Aligned_cols=86 Identities=9% Similarity=0.046 Sum_probs=68.8
Q ss_pred cccEEECcCCcCCCCCCccccccCCCCEEeCCCcc-CCCCCchhhcCC----ccCCEEeCcCCc-CcccCCcccccCCCC
Q 005168 514 LLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNN-LTGLIPSTFSNL----KHIESLDLSYNK-LNGKIPHQLVELKTL 587 (710)
Q Consensus 514 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~N~-i~~~~~~~l~~l~~L 587 (710)
.|+.||++++.++..--..+.++++|++|+|++|. +++.--..+..+ ++|++|+|++|. |+..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 79999999999887666678899999999999995 776544556554 479999999985 775444557789999
Q ss_pred CEEeccCCcccc
Q 005168 588 EVFSVAYNNLSG 599 (710)
Q Consensus 588 ~~L~l~~N~l~~ 599 (710)
+.|++++++-.+
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 999999997443
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.59 E-value=2.9e-05 Score=70.07 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=56.6
Q ss_pred CCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCCC-CC--------Cc----ccccEEecCCCc-ceeecCHHhhcC
Q 005168 20 LSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENK-ID--------KF----VVSKELYLDDTG-FKGTLDIREFDS 85 (710)
Q Consensus 20 l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n~-l~--------~l----~~l~~L~L~~~~-~~~~i~~~~~~~ 85 (710)
-.+|++||++++.|+.. .-..+..+++|++|+|++|. ++ .+ ++|++|+|++|. +++.--. .+.+
T Consensus 60 ~~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~ 137 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHH 137 (176)
T ss_dssp CCCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGG
T ss_pred CceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhc
Confidence 35789999999988733 22567889999999999985 55 32 368888888875 6644333 6778
Q ss_pred CCCCCEEEccCCc
Q 005168 86 FNNLEVLDMSYNK 98 (710)
Q Consensus 86 l~~L~~L~Ls~n~ 98 (710)
+++|++|+++++.
T Consensus 138 ~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 138 FRNLKYLFLSDLP 150 (176)
T ss_dssp CTTCCEEEEESCT
T ss_pred CCCCCEEECCCCC
Confidence 8888888888874
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.71 E-value=0.0027 Score=54.39 Aligned_cols=58 Identities=22% Similarity=0.244 Sum_probs=48.2
Q ss_pred cEEECcCCcCC-CCCCccccccCCCCEEeCCCccCCCCCchhhcCCccCCEEeCcCCcCcc
Q 005168 516 SGLYLSCNKLI-GHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNG 575 (710)
Q Consensus 516 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 575 (710)
..++.+++.++ ..+|..+. ++|++|+|++|+|+.+.++.|..+++|+.|+|++|.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47888999887 23454332 469999999999999999999999999999999998864
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.60 E-value=0.00078 Score=61.92 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=35.7
Q ss_pred cccCCCCEEeCCCccCCCC----CchhhcCCccCCEEeCcCCcC---cc----cCCcccccCCCCCEEeccCCccc
Q 005168 534 GNLTRIQTLNLSYNNLTGL----IPSTFSNLKHIESLDLSYNKL---NG----KIPHQLVELKTLEVFSVAYNNLS 598 (710)
Q Consensus 534 ~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~i---~~----~~~~~l~~l~~L~~L~l~~N~l~ 598 (710)
..-+.|++|+|++|.|... +.+++..-+.|++|+|++|.. .. .+-+.+...++|+.|+++.|...
T Consensus 95 ~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 95 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 3445566666666666532 223444455677777765432 21 12344555677777777766543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.56 E-value=0.005 Score=56.54 Aligned_cols=109 Identities=13% Similarity=0.102 Sum_probs=59.6
Q ss_pred ccCCCCCEEECCCC-cccc----ccChhhhcCCCCCCEEeCCCCCCCCcccccEEecCCCcceeecCHHhhcCCCCCCEE
Q 005168 18 THLSSLRSLNLNGN-SLEG----SIDVKEFDSLRDLEELDIGENKIDKFVVSKELYLDDTGFKGTLDIREFDSFNNLEVL 92 (710)
Q Consensus 18 ~~l~~L~~L~Ls~n-~i~~----~i~~~~f~~l~~L~~L~Ls~n~l~~l~~l~~L~L~~~~~~~~i~~~~~~~l~~L~~L 92 (710)
..-+.|++|+|++| .|.. .+- .++..-..|+.|+|++|.|..- .. ..|.. ++..-+.|++|
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n~igd~-----------ga-~alA~-aL~~N~tL~~L 103 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAISDS-----------EA-RGLIE-LIETSPSLRVL 103 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHH-----------HH-TTHHH-HHHHCSSCCEE
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCCCCChH-----------HH-HHHHH-HHhcCCccCeE
Confidence 45567888888775 6542 122 4566677788888887776500 00 01222 44444556666
Q ss_pred EccCCcCCCC------------CCCcEEEcccc---ccccc---cCcccccCCCCCcEEEccCCcc
Q 005168 93 DMSYNKIDNL------------VVPQELRLSDN---HFRIP---ISLEPLFNHSRLKIFHAKNNQM 140 (710)
Q Consensus 93 ~Ls~n~l~~~------------~~L~~L~L~~~---~l~~~---~~~~~l~~l~~L~~L~L~~n~~ 140 (710)
+|++|.|..- +.|++|+|+++ .+... .-...+..-+.|+.|+++.+.+
T Consensus 104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 6666655432 55666666643 22211 0112345557788888877654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=83.32 E-value=0.98 Score=36.10 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=42.8
Q ss_pred CCCCCCccchhhccCCCCCEEECCCCccccccChhhhcCCCCCCEEeCCCC
Q 005168 6 GNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGEN 56 (710)
Q Consensus 6 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~i~~~~f~~l~~L~~L~Ls~n 56 (710)
+..++.|...+|.+|..|+.+.+..+ ++ .|...+|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcCC
Confidence 46788899999999999999999887 45 577799999999999999854
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=75.08 E-value=3.4 Score=32.90 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=27.9
Q ss_pred cCcccCCccCcCCCCCCEEeccCCccCCcCChhhhcCCCCCcEEEccC
Q 005168 265 ALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSN 312 (710)
Q Consensus 265 ~i~~~~~~~f~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~ 312 (710)
.++.+...+|.++.+|+.+.+-.+ ++ .|...+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 445555666666666666666644 33 56666666666666666543
No 167
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=28.27 E-value=8.8 Score=27.10 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=12.9
Q ss_pred eeeehhhHHHHHHHHHHhhhhhhHHH
Q 005168 658 TFTTSYVIVIFAIVIILYVNSYWRRR 683 (710)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (710)
+++.++.+++++..++++.+++|+++
T Consensus 13 vlGg~~~lll~~glcI~ccvkcrhRr 38 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSVRSRHRR 38 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444555555555455555443
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=27.86 E-value=10 Score=23.82 Aligned_cols=10 Identities=0% Similarity=-0.134 Sum_probs=3.8
Q ss_pred eeehhhHHHH
Q 005168 659 FTTSYVIVIF 668 (710)
Q Consensus 659 ~~~~~~~~~~ 668 (710)
++++.++.+.
T Consensus 16 iVvG~v~gv~ 25 (38)
T 2k1k_A 16 VIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHH
T ss_pred eehHHHHHHH
Confidence 3333333333
Done!