Query 005169
Match_columns 710
No_of_seqs 175 out of 558
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 17:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005169.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005169hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qled_ f.23.8.1 (D:) Bacteria 62.9 2.8 0.0002 30.4 3.2 25 120-144 19-43 (43)
2 d1m56d_ f.23.8.1 (D:) Bacteria 61.9 3.1 0.00023 30.0 3.3 25 120-144 18-42 (42)
3 d3b45a1 f.51.1.1 (A:91-270) Gl 26.6 75 0.0055 27.4 7.5 59 45-105 62-120 (180)
4 d2pila_ d.24.1.1 (A:) Pilin Gc 26.0 10 0.00073 31.4 1.2 26 548-577 1-26 (158)
5 d2i5nh2 f.23.10.1 (H:1-36) Pho 14.2 46 0.0034 22.3 2.2 17 122-138 15-32 (36)
6 d1wpga4 f.33.1.1 (A:1-124,A:24 8.5 2.1E+02 0.016 28.3 6.2 48 208-255 383-430 (472)
7 d1h2sb_ f.17.4.1 (B:) Sensory 8.5 1.5E+02 0.011 21.6 3.5 41 40-81 2-46 (60)
8 d1rh1a2 f.1.1.1 (A:313-511) Co 6.9 85 0.0062 29.0 1.8 36 61-96 124-166 (199)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 6.1 1.3E+02 0.0094 19.4 1.8 11 158-168 9-19 (30)
10 d2nr9a1 f.51.1.1 (A:4-192) Glp 5.4 2E+02 0.015 24.7 3.6 56 44-101 63-118 (189)
No 1
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=62.86 E-value=2.8 Score=30.40 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=23.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhcc
Q 005169 120 LFIAWSGWVCVWTALLLLMLSILGA 144 (710)
Q Consensus 120 ~fL~~~~WVgiWta~~l~llai~na 144 (710)
-|+.|.-|+++-..++++++|++|+
T Consensus 19 gFi~~~t~~~i~~i~~liflAi~ns 43 (43)
T d1qled_ 19 GFIKGATWVSILSIAVLVFLALANS 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3999999999999999999999985
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=61.93 E-value=3.1 Score=29.97 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=23.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhcc
Q 005169 120 LFIAWSGWVCVWTALLLLMLSILGA 144 (710)
Q Consensus 120 ~fL~~~~WVgiWta~~l~llai~na 144 (710)
-|+.|.-|+++=..++++++|++|+
T Consensus 18 gFik~~t~~~i~~i~~liflAi~ns 42 (42)
T d1m56d_ 18 GFVRMVTWAAVVIVAALIFLALANA 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3999999999999999999999985
No 3
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=26.63 E-value=75 Score=27.43 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=36.8
Q ss_pred HhhhhhHHHHhhccchhcCCcchhhHHHHhhhHhHHHHHHhcCcceeeeeccchhHHHHHH
Q 005169 45 FASAIPVISFGEQLERDTEGVLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVIMYTF 105 (710)
Q Consensus 45 FA~llPaIaFG~lL~~~T~g~lgv~E~Llstai~Giifslf~GQPL~IlGvTGP~~if~~~ 105 (710)
+.|+..-..||..+++.-+..-=..=.+++..++|++..++... ...|.+|-+...-.+
T Consensus 62 ~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~~--~~~G~sg~i~~l~~~ 120 (180)
T d3b45a1 62 LFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGP--WFGGLSGVVYALMGY 120 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHHHhcc--ccccccchHHHHHHH
Confidence 45666777799888887653322233345666667777777665 467888865544443
No 4
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=25.96 E-value=10 Score=31.39 Aligned_cols=26 Identities=23% Similarity=0.453 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhheeeechhhhhhHHHHHH
Q 005169 548 FTIFQTIYLLICFGLTWVPIAGVMFPLMIM 577 (710)
Q Consensus 548 FT~iQl~~l~~~f~vt~i~~aai~FPl~i~ 577 (710)
||+++++..++..||+ ++|++|-+.-
T Consensus 1 FTLIELlVViaIIgIL----aaia~P~~~~ 26 (158)
T d2pila_ 1 FTLIELMIVIAIVGIL----AAVALPAYQD 26 (158)
T ss_dssp CCHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHH----HHHHHHHHHH
Confidence 8999999888887776 7788887643
No 5
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=14.19 E-value=46 Score=22.25 Aligned_cols=17 Identities=35% Similarity=1.257 Sum_probs=12.2
Q ss_pred hhHHH-HHHHHHHHHHHH
Q 005169 122 IAWSG-WVCVWTALLLLM 138 (710)
Q Consensus 122 L~~~~-WVgiWta~~l~l 138 (710)
|-|++ |.-+|+.+++.+
T Consensus 15 lvwyaqwlviwtvvllyl 32 (36)
T d2i5nh2 15 LVWYAQWLVIWTVVLLYL 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 44544 899999887754
No 6
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=8.53 E-value=2.1e+02 Score=28.34 Aligned_cols=48 Identities=8% Similarity=-0.107 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhccccccccccccccccccchhhHHHHHHhhhcccccC
Q 005169 208 SFGLLYTGLKSRKARSWRYGTGWLRSVIADYGVPLMVVVWTGVSYIPS 255 (710)
Q Consensus 208 ~~Gt~~~a~~lr~~rss~y~~~~vR~~IaDygvpiaVl~~t~vsy~~~ 255 (710)
.+.-++.++..|..|.+-+..+..|+-.--+++.+++++...+.|.+.
T Consensus 383 v~~q~~~~~~~rs~~~s~~~~~~~~N~~l~~av~i~~~l~~~i~yiP~ 430 (472)
T d1wpga4 383 VTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDP 430 (472)
T ss_dssp HHHHHHHHHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCcchhhcCccccHHHHHHHHHHHHHHHHHHHhhH
Confidence 344445566666666655555555665555666666666666667654
No 7
>d1h2sb_ f.17.4.1 (B:) Sensory rhodopsin II transducer, Htr2 {Natronomonas pharaonis [TaxId: 2257]}
Probab=8.53 E-value=1.5e+02 Score=21.55 Aligned_cols=41 Identities=22% Similarity=0.424 Sum_probs=25.4
Q ss_pred hHHHHHhh---hhhHHHHhhccch-hcCCcchhhHHHHhhhHhHHH
Q 005169 40 TTYIFFAS---AIPVISFGEQLER-DTEGVLTAVQTLASTALCGII 81 (710)
Q Consensus 40 t~fifFA~---llPaIaFG~lL~~-~T~g~lgv~E~Llstai~Gii 81 (710)
.+|||... +.-+|++|+.-.. .|+..-.++|.-+|. |-|+|
T Consensus 2 avfifvgaltvlfgaiaygevtaaaatgdaaavqeaavsa-ilgli 46 (60)
T d1h2sb_ 2 AVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSA-ILGLI 46 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHH
T ss_pred cEEEEEcHHHHHHhhhhhceehHhhhcCcHHHHHHHHHHH-HHHHH
Confidence 35777644 5569999998654 455555666665554 44443
No 8
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.88 E-value=85 Score=28.96 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=30.0
Q ss_pred hcCCcchh---hHHHH----hhhHhHHHHHHhcCcceeeeecc
Q 005169 61 DTEGVLTA---VQTLA----STALCGIIHSIIGGQPLLILGVA 96 (710)
Q Consensus 61 ~T~g~lgv---~E~Ll----stai~Giifslf~GQPL~IlGvT 96 (710)
+|+++=-. +|+++ +|+++..+||+..|-|+.|+|..
T Consensus 124 eTgNWrPl~vk~Et~a~~~~At~v~~~~fs~~~g~~~~~~g~~ 166 (199)
T d1rh1a2 124 QTGNWGPLMLEVESWVISGMASAVALSLFSLTLGSALIAFGLS 166 (199)
T ss_dssp SSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred hCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 67765444 78888 88888999999999999999986
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.12 E-value=1.3e+02 Score=19.36 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=8.4
Q ss_pred HHHHHHHHHHH
Q 005169 158 LFGLLIAMLFM 168 (710)
Q Consensus 158 iF~~LIsviFi 168 (710)
||+++|++.|.
T Consensus 9 ifac~i~lfff 19 (30)
T d2axtt1 9 IFACIIALFFF 19 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888887665
No 10
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=5.41 E-value=2e+02 Score=24.73 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=39.6
Q ss_pred HHhhhhhHHHHhhccchhcCCcchhhHHHHhhhHhHHHHHHhcCcceeeeeccchhHH
Q 005169 44 FFASAIPVISFGEQLERDTEGVLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVI 101 (710)
Q Consensus 44 fFA~llPaIaFG~lL~~~T~g~lgv~E~Llstai~Giifslf~GQPL~IlGvTGP~~i 101 (710)
.+.|+..-+.||..+++.-+..--..=.+++..+++++++++.++| ++|.+|-+--
T Consensus 63 l~~N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~~~--~vGaSG~v~g 118 (189)
T d2nr9a1 63 ILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA--FFGLSGVVYA 118 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC--CCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCC--cccchHHHHH
Confidence 4556777888898888766544434445667888888888888766 5799987543
Done!