Query 005171
Match_columns 710
No_of_seqs 467 out of 2861
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 19:13:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 5E-106 1E-110 921.4 40.9 615 21-709 3-628 (657)
2 PF01031 Dynamin_M: Dynamin ce 100.0 5.7E-58 1.2E-62 487.7 23.8 287 235-521 2-290 (295)
3 smart00053 DYNc Dynamin, GTPas 100.0 6.4E-47 1.4E-51 387.5 26.8 239 22-262 1-239 (240)
4 KOG0447 Dynamin-like GTP bindi 100.0 7.1E-34 1.5E-38 304.3 31.8 422 21-456 280-724 (980)
5 PF00350 Dynamin_N: Dynamin fa 99.9 4.1E-22 8.9E-27 193.9 16.2 166 50-225 1-168 (168)
6 smart00302 GED Dynamin GTPase 99.7 8.7E-19 1.9E-23 153.9 4.8 61 649-709 1-67 (92)
7 PRK09866 hypothetical protein; 99.6 7.3E-13 1.6E-17 149.3 30.5 173 48-232 70-306 (741)
8 COG0218 Predicted GTPase [Gene 99.6 4.7E-14 1E-18 138.7 17.1 127 45-232 22-152 (200)
9 COG1159 Era GTPase [General fu 99.6 5.1E-14 1.1E-18 145.6 17.3 125 49-233 8-132 (298)
10 COG1160 Predicted GTPases [Gen 99.6 4E-14 8.6E-19 153.9 15.8 124 48-230 4-127 (444)
11 COG0699 Predicted GTPases (dyn 99.6 6.9E-14 1.5E-18 161.0 17.7 377 97-523 2-379 (546)
12 COG0486 ThdF Predicted GTPase 99.5 1.2E-12 2.6E-17 142.8 22.7 151 21-232 190-341 (454)
13 PF02212 GED: Dynamin GTPase e 99.5 1.1E-14 2.4E-19 128.1 5.1 61 649-709 1-67 (92)
14 TIGR00436 era GTP-binding prot 99.5 1E-12 2.2E-17 138.5 19.0 120 49-230 2-122 (270)
15 COG1160 Predicted GTPases [Gen 99.4 3.6E-13 7.7E-18 146.6 11.7 157 17-231 145-305 (444)
16 PRK00089 era GTPase Era; Revie 99.4 4E-12 8.7E-17 135.4 18.8 121 49-230 7-128 (292)
17 TIGR03156 GTP_HflX GTP-binding 99.4 2.4E-12 5.1E-17 140.4 16.7 126 45-229 187-315 (351)
18 COG3596 Predicted GTPase [Gene 99.4 1.1E-12 2.4E-17 133.9 13.0 185 46-309 37-227 (296)
19 PF02421 FeoB_N: Ferrous iron 99.4 1.1E-12 2.4E-17 126.1 10.5 117 49-230 2-120 (156)
20 COG1084 Predicted GTPase [Gene 99.4 5.1E-12 1.1E-16 131.9 15.7 143 29-231 151-296 (346)
21 PF01926 MMR_HSR1: 50S ribosom 99.4 7.7E-12 1.7E-16 114.3 13.2 115 49-224 1-116 (116)
22 PRK00454 engB GTP-binding prot 99.4 3.3E-11 7.1E-16 120.0 18.6 142 29-231 4-151 (196)
23 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 1E-11 2.3E-16 124.4 14.8 132 49-239 2-139 (196)
24 KOG0448 Mitofusin 1 GTPase, in 99.3 1.5E-10 3.2E-15 130.2 24.5 166 48-236 110-282 (749)
25 cd04163 Era Era subfamily. Er 99.3 2.4E-11 5.3E-16 115.9 15.9 122 47-229 3-125 (168)
26 PRK11058 GTPase HflX; Provisio 99.3 2.3E-11 5E-16 135.7 17.8 126 45-229 195-323 (426)
27 TIGR03598 GTPase_YsxC ribosome 99.3 1.2E-11 2.6E-16 122.0 13.5 125 45-230 16-144 (179)
28 TIGR03594 GTPase_EngA ribosome 99.3 3.7E-11 8E-16 134.9 19.1 150 21-228 144-296 (429)
29 cd01895 EngA2 EngA2 subfamily. 99.3 2.8E-11 6.1E-16 116.7 15.7 127 47-230 2-128 (174)
30 PRK00093 GTP-binding protein D 99.3 5.4E-11 1.2E-15 133.8 19.6 151 21-229 146-298 (435)
31 cd01897 NOG NOG1 is a nucleola 99.3 3.6E-11 7.8E-16 116.4 15.6 25 48-72 1-25 (168)
32 cd01878 HflX HflX subfamily. 99.3 4.4E-11 9.5E-16 120.3 15.6 127 45-230 39-168 (204)
33 PRK03003 GTP-binding protein D 99.3 5.8E-11 1.3E-15 134.9 18.3 153 18-229 180-336 (472)
34 PRK05291 trmE tRNA modificatio 99.3 1.5E-10 3.2E-15 130.5 21.1 146 22-230 189-336 (449)
35 PRK12299 obgE GTPase CgtA; Rev 99.3 6.4E-11 1.4E-15 128.2 16.8 125 46-230 157-286 (335)
36 cd01876 YihA_EngB The YihA (En 99.3 6.6E-11 1.4E-15 113.3 14.4 122 49-231 1-126 (170)
37 TIGR00450 mnmE_trmE_thdF tRNA 99.3 6.6E-10 1.4E-14 124.8 24.5 148 21-230 177-325 (442)
38 cd01894 EngA1 EngA1 subfamily. 99.3 5.3E-11 1.1E-15 113.3 13.6 76 148-230 45-120 (157)
39 PRK03003 GTP-binding protein D 99.3 7.9E-11 1.7E-15 133.8 17.4 124 45-229 36-160 (472)
40 PRK15494 era GTPase Era; Provi 99.3 4.7E-11 1E-15 129.9 14.8 122 48-230 53-175 (339)
41 PRK09518 bifunctional cytidyla 99.3 1.5E-10 3.3E-15 137.6 20.2 154 18-230 417-576 (712)
42 TIGR03594 GTPase_EngA ribosome 99.3 5.6E-11 1.2E-15 133.4 15.0 121 49-230 1-122 (429)
43 PRK12298 obgE GTPase CgtA; Rev 99.3 1.2E-10 2.6E-15 128.5 17.0 123 47-230 159-290 (390)
44 cd01853 Toc34_like Toc34-like 99.2 1.2E-10 2.5E-15 121.2 15.0 131 44-232 28-166 (249)
45 cd01898 Obg Obg subfamily. Th 99.2 9.1E-11 2E-15 113.7 13.2 24 49-72 2-25 (170)
46 cd01887 IF2_eIF5B IF2/eIF5B (i 99.2 1.2E-10 2.6E-15 112.5 13.8 116 48-229 1-116 (168)
47 PRK04213 GTP-binding protein; 99.2 2.1E-10 4.5E-15 115.1 15.9 125 45-230 7-145 (201)
48 cd00880 Era_like Era (E. coli 99.2 1.8E-10 3.9E-15 108.4 14.6 76 148-231 45-120 (163)
49 KOG1423 Ras-like GTPase ERA [C 99.2 1.2E-10 2.5E-15 120.2 13.7 129 48-233 73-203 (379)
50 cd04164 trmE TrmE (MnmE, ThdF, 99.2 2.9E-10 6.4E-15 107.9 15.6 119 49-230 3-122 (157)
51 COG2262 HflX GTPases [General 99.2 4.1E-10 8.9E-15 121.2 17.4 167 44-306 189-358 (411)
52 PRK12296 obgE GTPase CgtA; Rev 99.2 2.8E-10 6E-15 128.2 16.4 26 46-71 158-183 (500)
53 PRK09518 bifunctional cytidyla 99.2 2.1E-10 4.5E-15 136.5 16.1 123 46-229 274-397 (712)
54 PF04548 AIG1: AIG1 family; I 99.2 8.1E-11 1.7E-15 119.7 10.8 131 49-238 2-138 (212)
55 TIGR00991 3a0901s02IAP34 GTP-b 99.2 3E-10 6.6E-15 120.2 15.4 152 18-238 17-177 (313)
56 PRK00093 GTP-binding protein D 99.2 2.5E-10 5.3E-15 128.5 15.7 122 47-229 1-123 (435)
57 TIGR02729 Obg_CgtA Obg family 99.2 2.8E-10 6.1E-15 123.1 15.4 125 46-230 156-288 (329)
58 cd01868 Rab11_like Rab11-like. 99.2 2.7E-10 5.9E-15 110.0 13.7 116 48-229 4-122 (165)
59 cd04104 p47_IIGP_like p47 (47- 99.2 4.1E-10 8.9E-15 113.1 15.2 72 147-230 51-122 (197)
60 cd01864 Rab19 Rab19 subfamily. 99.2 5.2E-10 1.1E-14 108.2 15.3 118 47-230 3-123 (165)
61 PRK12297 obgE GTPase CgtA; Rev 99.2 6.7E-10 1.4E-14 123.5 17.0 120 47-228 158-287 (424)
62 PF05049 IIGP: Interferon-indu 99.2 3.9E-10 8.5E-15 122.3 14.6 133 24-227 16-153 (376)
63 cd04171 SelB SelB subfamily. 99.2 5E-10 1.1E-14 107.5 13.8 67 148-230 51-119 (164)
64 cd01861 Rab6 Rab6 subfamily. 99.2 4.4E-10 9.5E-15 107.9 13.4 115 49-229 2-119 (161)
65 cd01866 Rab2 Rab2 subfamily. 99.2 4.5E-10 9.7E-15 109.3 13.6 117 47-229 4-123 (168)
66 cd04142 RRP22 RRP22 subfamily. 99.2 9.3E-10 2E-14 110.7 16.2 123 49-229 2-130 (198)
67 cd00154 Rab Rab family. Rab G 99.1 4.2E-10 9.2E-15 106.5 12.7 115 48-228 1-118 (159)
68 KOG1954 Endocytosis/signaling 99.1 4.3E-10 9.2E-15 118.2 12.7 169 46-232 57-228 (532)
69 cd00881 GTP_translation_factor 99.1 6.6E-10 1.4E-14 109.2 13.4 68 148-230 62-129 (189)
70 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.1 5.5E-10 1.2E-14 108.4 12.2 122 44-230 19-143 (221)
71 cd01862 Rab7 Rab7 subfamily. 99.1 1.3E-09 2.8E-14 105.7 15.0 115 49-229 2-123 (172)
72 cd01879 FeoB Ferrous iron tran 99.1 9.7E-10 2.1E-14 104.9 13.7 71 149-230 44-116 (158)
73 cd04122 Rab14 Rab14 subfamily. 99.1 9.4E-10 2E-14 106.7 13.5 117 48-230 3-122 (166)
74 cd01890 LepA LepA subfamily. 99.1 9.8E-10 2.1E-14 107.6 13.5 67 148-229 67-133 (179)
75 cd01850 CDC_Septin CDC/Septin. 99.1 7.1E-10 1.5E-14 117.2 13.3 137 49-231 6-159 (276)
76 cd04124 RabL2 RabL2 subfamily. 99.1 1.4E-09 3E-14 105.2 14.1 113 49-228 2-117 (161)
77 cd01865 Rab3 Rab3 subfamily. 99.1 1E-09 2.2E-14 106.4 13.3 69 148-230 50-121 (165)
78 cd01867 Rab8_Rab10_Rab13_like 99.1 1.1E-09 2.4E-14 106.4 13.5 117 47-229 3-122 (167)
79 cd04127 Rab27A Rab27a subfamil 99.1 1.9E-09 4.1E-14 105.8 15.3 68 148-229 63-134 (180)
80 cd04112 Rab26 Rab26 subfamily. 99.1 1.3E-09 2.9E-14 108.5 14.3 67 149-229 51-120 (191)
81 PF10662 PduV-EutP: Ethanolami 99.1 7.7E-10 1.7E-14 104.4 11.6 25 48-72 2-26 (143)
82 cd04120 Rab12 Rab12 subfamily. 99.1 2.1E-09 4.6E-14 108.5 15.5 116 49-229 2-119 (202)
83 cd04113 Rab4 Rab4 subfamily. 99.1 1.5E-09 3.2E-14 104.4 13.4 115 49-229 2-119 (161)
84 cd04136 Rap_like Rap-like subf 99.1 9.2E-10 2E-14 105.7 11.8 115 48-229 2-120 (163)
85 cd04119 RJL RJL (RabJ-Like) su 99.1 1.2E-09 2.7E-14 105.0 12.7 115 49-229 2-124 (168)
86 cd04106 Rab23_lke Rab23-like s 99.1 1.6E-09 3.6E-14 104.0 13.4 69 148-230 51-121 (162)
87 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.1 4.6E-09 1E-13 104.0 16.9 115 49-229 5-123 (183)
88 cd04101 RabL4 RabL4 (Rab-like4 99.1 2E-09 4.4E-14 103.7 14.0 68 148-230 52-122 (164)
89 cd04118 Rab24 Rab24 subfamily. 99.1 2.1E-09 4.6E-14 106.9 14.2 25 49-73 2-26 (193)
90 PRK09554 feoB ferrous iron tra 99.1 2.3E-09 4.9E-14 127.6 16.7 121 48-230 4-127 (772)
91 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.1 2E-09 4.2E-14 104.2 13.4 67 149-229 52-121 (166)
92 cd04157 Arl6 Arl6 subfamily. 99.1 1.2E-09 2.7E-14 104.7 11.8 69 148-230 45-119 (162)
93 smart00175 RAB Rab subfamily o 99.1 1.8E-09 3.8E-14 103.8 12.8 67 149-229 50-119 (164)
94 cd01860 Rab5_related Rab5-rela 99.1 2.4E-09 5.2E-14 102.9 13.7 115 49-229 3-120 (163)
95 cd01893 Miro1 Miro1 subfamily. 99.0 4.1E-09 8.8E-14 102.4 15.0 68 148-230 47-118 (166)
96 cd04144 Ras2 Ras2 subfamily. 99.0 3.1E-09 6.7E-14 105.8 14.3 67 149-229 48-120 (190)
97 cd04145 M_R_Ras_like M-Ras/R-R 99.0 1.9E-09 4.1E-14 103.7 12.3 67 149-229 51-121 (164)
98 cd04107 Rab32_Rab38 Rab38/Rab3 99.0 6.1E-09 1.3E-13 104.6 16.2 68 148-229 50-124 (201)
99 smart00173 RAS Ras subfamily o 99.0 1.8E-09 3.9E-14 104.1 11.9 114 49-229 2-119 (164)
100 cd04159 Arl10_like Arl10-like 99.0 4.2E-09 9E-14 99.8 14.1 69 148-230 44-116 (159)
101 cd04114 Rab30 Rab30 subfamily. 99.0 6.6E-09 1.4E-13 100.6 15.6 117 46-229 6-126 (169)
102 cd04123 Rab21 Rab21 subfamily. 99.0 3.6E-09 7.9E-14 101.1 13.4 115 49-229 2-119 (162)
103 cd04138 H_N_K_Ras_like H-Ras/N 99.0 2.4E-09 5.1E-14 102.4 12.1 116 48-229 2-120 (162)
104 cd01881 Obg_like The Obg-like 99.0 1.2E-09 2.7E-14 106.1 10.1 21 52-72 1-21 (176)
105 KOG1191 Mitochondrial GTPase [ 99.0 2.1E-09 4.5E-14 117.5 12.5 128 46-232 267-406 (531)
106 cd04147 Ras_dva Ras-dva subfam 99.0 8.4E-09 1.8E-13 103.5 16.2 68 148-229 47-118 (198)
107 cd04108 Rab36_Rab34 Rab34/Rab3 99.0 7.6E-09 1.7E-13 101.3 15.5 115 49-229 2-120 (170)
108 cd04110 Rab35 Rab35 subfamily. 99.0 7.3E-09 1.6E-13 104.0 15.7 116 47-229 6-124 (199)
109 cd04111 Rab39 Rab39 subfamily. 99.0 1.2E-08 2.6E-13 103.7 17.2 117 48-229 3-123 (211)
110 cd04109 Rab28 Rab28 subfamily. 99.0 3.4E-09 7.4E-14 107.8 13.2 116 49-229 2-123 (215)
111 cd04116 Rab9 Rab9 subfamily. 99.0 7.3E-09 1.6E-13 100.6 15.0 117 47-228 5-127 (170)
112 cd04139 RalA_RalB RalA/RalB su 99.0 3.8E-09 8.3E-14 101.3 12.7 115 49-229 2-119 (164)
113 PF00009 GTP_EFTU: Elongation 99.0 1.4E-09 2.9E-14 108.3 9.8 69 145-228 67-135 (188)
114 cd04132 Rho4_like Rho4-like su 99.0 8.7E-09 1.9E-13 101.9 15.4 24 49-72 2-25 (187)
115 cd04175 Rap1 Rap1 subgroup. T 99.0 3.2E-09 6.8E-14 102.6 12.0 115 48-229 2-120 (164)
116 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.0 5.5E-09 1.2E-13 102.5 13.3 115 49-229 4-121 (172)
117 COG0370 FeoB Fe2+ transport sy 99.0 2E-09 4.4E-14 122.5 11.5 119 48-230 4-123 (653)
118 TIGR02528 EutP ethanolamine ut 99.0 8.5E-09 1.8E-13 97.2 13.8 24 49-72 2-25 (142)
119 PTZ00369 Ras-like protein; Pro 99.0 6.9E-09 1.5E-13 103.3 13.8 26 47-72 5-30 (189)
120 TIGR00993 3a0901s04IAP86 chlor 99.0 7.8E-09 1.7E-13 117.6 15.5 125 48-230 119-251 (763)
121 cd01863 Rab18 Rab18 subfamily. 99.0 8.2E-09 1.8E-13 99.1 13.6 115 49-229 2-120 (161)
122 cd01892 Miro2 Miro2 subfamily. 99.0 6.5E-09 1.4E-13 101.6 13.1 118 47-229 4-122 (169)
123 cd04156 ARLTS1 ARLTS1 subfamil 99.0 7.4E-09 1.6E-13 99.3 13.3 68 148-229 44-115 (160)
124 smart00174 RHO Rho (Ras homolo 99.0 4.5E-09 9.7E-14 102.4 11.8 67 149-230 47-117 (174)
125 cd00876 Ras Ras family. The R 99.0 6.3E-09 1.4E-13 99.2 12.6 114 49-229 1-118 (160)
126 cd04140 ARHI_like ARHI subfami 99.0 4.8E-09 1E-13 101.6 12.0 68 148-229 49-122 (165)
127 PLN03110 Rab GTPase; Provision 99.0 1.8E-08 3.9E-13 102.7 16.5 117 47-229 12-131 (216)
128 PRK15467 ethanolamine utilizat 99.0 8.9E-09 1.9E-13 99.8 13.6 23 49-71 3-25 (158)
129 cd04125 RabA_like RabA-like su 99.0 2E-08 4.4E-13 99.6 16.5 68 148-229 49-119 (188)
130 cd01891 TypA_BipA TypA (tyrosi 99.0 3.9E-09 8.5E-14 105.5 11.4 68 148-230 65-132 (194)
131 cd04160 Arfrp1 Arfrp1 subfamil 98.9 9.5E-09 2.1E-13 99.3 13.3 69 148-230 50-122 (167)
132 cd04176 Rap2 Rap2 subgroup. T 98.9 3.6E-09 7.9E-14 101.9 10.0 115 49-229 3-120 (163)
133 cd04166 CysN_ATPS CysN_ATPS su 98.9 7.9E-09 1.7E-13 104.7 12.6 82 132-230 62-145 (208)
134 PLN03108 Rab family protein; P 98.9 2.2E-08 4.8E-13 101.5 15.9 117 47-229 6-125 (210)
135 smart00178 SAR Sar1p-like memb 98.9 7.3E-09 1.6E-13 102.8 12.0 113 47-229 17-132 (184)
136 cd04165 GTPBP1_like GTPBP1-lik 98.9 1E-08 2.2E-13 105.2 13.3 72 145-230 81-153 (224)
137 cd04162 Arl9_Arfrp2_like Arl9/ 98.9 6.3E-09 1.4E-13 101.2 11.2 69 148-230 44-114 (164)
138 TIGR00491 aIF-2 translation in 98.9 7.6E-09 1.6E-13 119.6 13.4 134 45-229 2-135 (590)
139 cd04154 Arl2 Arl2 subfamily. 98.9 1E-08 2.2E-13 100.2 12.5 114 46-230 13-130 (173)
140 cd04115 Rab33B_Rab33A Rab33B/R 98.9 1.3E-08 2.7E-13 99.3 13.0 68 148-229 51-123 (170)
141 cd04161 Arl2l1_Arl13_like Arl2 98.9 9.5E-09 2.1E-13 100.2 12.1 69 148-230 43-115 (167)
142 PTZ00133 ADP-ribosylation fact 98.9 1.9E-08 4.1E-13 99.7 14.4 68 148-229 61-132 (182)
143 cd01896 DRG The developmentall 98.9 2.3E-08 4.9E-13 103.3 15.4 23 49-71 2-24 (233)
144 cd01870 RhoA_like RhoA-like su 98.9 1.7E-08 3.7E-13 98.4 13.7 25 48-72 2-26 (175)
145 cd01889 SelB_euk SelB subfamil 98.9 2.5E-08 5.5E-13 99.4 15.2 66 148-230 68-135 (192)
146 PLN00223 ADP-ribosylation fact 98.9 2.8E-08 6E-13 98.4 15.3 69 148-230 61-133 (181)
147 cd00878 Arf_Arl Arf (ADP-ribos 98.9 1.4E-08 3E-13 97.3 12.7 69 148-230 43-115 (158)
148 cd00879 Sar1 Sar1 subfamily. 98.9 2.1E-08 4.5E-13 99.4 13.9 122 36-229 10-134 (190)
149 smart00177 ARF ARF-like small 98.9 8.9E-09 1.9E-13 101.2 11.2 68 148-229 57-128 (175)
150 PLN03118 Rab family protein; P 98.9 1.2E-08 2.5E-13 103.5 12.2 68 149-229 63-134 (211)
151 cd04149 Arf6 Arf6 subfamily. 98.9 2.8E-08 6.1E-13 97.1 14.4 68 148-229 53-124 (168)
152 cd04177 RSR1 RSR1 subgroup. R 98.9 1E-08 2.3E-13 99.6 11.0 115 49-229 3-120 (168)
153 cd04158 ARD1 ARD1 subfamily. 98.9 1.8E-08 3.9E-13 98.3 12.6 68 148-229 43-114 (169)
154 cd00877 Ran Ran (Ras-related n 98.9 1.2E-08 2.7E-13 99.3 11.4 66 148-228 49-117 (166)
155 cd04169 RF3 RF3 subfamily. Pe 98.9 2.8E-08 6E-13 104.7 14.6 136 48-230 3-138 (267)
156 cd01886 EF-G Elongation factor 98.9 1.1E-08 2.4E-13 107.9 11.5 68 148-230 64-131 (270)
157 cd04128 Spg1 Spg1p. Spg1p (se 98.9 4.3E-08 9.4E-13 97.2 15.1 67 148-229 49-118 (182)
158 cd00157 Rho Rho (Ras homology) 98.9 1.3E-08 2.8E-13 98.5 11.0 24 49-72 2-25 (171)
159 cd04151 Arl1 Arl1 subfamily. 98.9 1.3E-08 2.8E-13 97.8 10.9 69 148-230 43-115 (158)
160 cd04135 Tc10 TC10 subfamily. 98.9 2.6E-08 5.6E-13 97.0 12.9 24 49-72 2-25 (174)
161 cd04117 Rab15 Rab15 subfamily. 98.9 3E-08 6.5E-13 95.9 13.3 115 49-229 2-119 (161)
162 cd04137 RheB Rheb (Ras Homolog 98.9 2.3E-08 5E-13 98.1 12.4 114 49-229 3-120 (180)
163 cd04134 Rho3 Rho3 subfamily. 98.9 2.7E-08 5.9E-13 99.0 12.9 69 148-230 48-119 (189)
164 cd04168 TetM_like Tet(M)-like 98.8 1.8E-08 3.9E-13 104.3 11.7 68 148-230 64-131 (237)
165 cd01874 Cdc42 Cdc42 subfamily. 98.8 4.1E-08 8.9E-13 96.6 13.7 116 48-230 2-120 (175)
166 cd04143 Rhes_like Rhes_like su 98.8 5.1E-08 1.1E-12 101.5 15.0 24 49-72 2-25 (247)
167 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.8 9.2E-08 2E-12 98.6 16.5 117 46-229 12-131 (232)
168 cd04126 Rab20 Rab20 subfamily. 98.8 6.7E-08 1.5E-12 98.9 15.3 67 149-229 45-114 (220)
169 cd01871 Rac1_like Rac1-like su 98.8 7.4E-08 1.6E-12 94.7 14.9 69 148-230 49-120 (174)
170 cd01888 eIF2_gamma eIF2-gamma 98.8 6.6E-08 1.4E-12 97.6 14.9 23 49-71 2-24 (203)
171 PLN03071 GTP-binding nuclear p 98.8 3.4E-08 7.3E-13 101.0 12.6 67 148-229 62-131 (219)
172 cd04150 Arf1_5_like Arf1-Arf5- 98.8 4.2E-08 9E-13 94.8 12.4 68 148-229 44-115 (159)
173 cd00882 Ras_like_GTPase Ras-li 98.8 4.4E-08 9.6E-13 90.7 12.1 70 148-231 45-118 (157)
174 cd04146 RERG_RasL11_like RERG/ 98.8 1.8E-08 3.9E-13 97.4 9.7 24 49-72 1-24 (165)
175 CHL00189 infB translation init 98.8 5E-08 1.1E-12 114.9 14.9 119 46-229 243-361 (742)
176 TIGR00231 small_GTP small GTP- 98.8 5.4E-08 1.2E-12 91.4 12.6 30 48-78 2-31 (161)
177 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.8 4.3E-08 9.4E-13 96.1 12.3 112 47-229 15-130 (174)
178 cd04102 RabL3 RabL3 (Rab-like3 98.8 1.1E-07 2.4E-12 96.0 15.3 26 49-74 2-27 (202)
179 cd01884 EF_Tu EF-Tu subfamily. 98.8 4E-08 8.6E-13 98.7 11.9 68 147-229 64-132 (195)
180 cd04148 RGK RGK subfamily. Th 98.8 3.5E-08 7.5E-13 101.0 11.4 24 49-72 2-25 (221)
181 cd04170 EF-G_bact Elongation f 98.8 6E-08 1.3E-12 102.2 13.5 68 148-230 64-131 (268)
182 TIGR00475 selB selenocysteine- 98.8 7.4E-08 1.6E-12 112.0 15.3 68 148-230 50-118 (581)
183 cd04121 Rab40 Rab40 subfamily. 98.8 5E-08 1.1E-12 97.4 12.1 67 148-229 55-124 (189)
184 cd04130 Wrch_1 Wrch-1 subfamil 98.8 6.3E-08 1.4E-12 94.6 12.4 24 49-72 2-25 (173)
185 cd04105 SR_beta Signal recogni 98.8 6.7E-08 1.5E-12 97.6 12.8 117 48-230 1-124 (203)
186 cd04131 Rnd Rnd subfamily. Th 98.8 1.7E-07 3.7E-12 92.6 15.1 114 49-229 3-119 (178)
187 PF00735 Septin: Septin; Inte 98.8 4E-08 8.6E-13 104.1 10.8 139 49-232 6-159 (281)
188 TIGR01393 lepA GTP-binding pro 98.7 1.3E-07 2.9E-12 110.0 15.8 132 47-229 3-136 (595)
189 cd01875 RhoG RhoG subfamily. 98.7 2.3E-07 5E-12 92.6 15.2 116 48-230 4-122 (191)
190 cd01885 EF2 EF2 (for archaea a 98.7 7.7E-08 1.7E-12 98.5 12.0 66 148-228 73-138 (222)
191 PRK05306 infB translation init 98.7 7.8E-08 1.7E-12 114.2 13.7 115 46-229 289-403 (787)
192 cd04155 Arl3 Arl3 subfamily. 98.7 9.1E-08 2E-12 93.1 11.7 27 46-72 13-39 (173)
193 PRK10512 selenocysteinyl-tRNA- 98.7 1.5E-07 3.2E-12 109.9 15.4 68 148-230 51-119 (614)
194 TIGR00487 IF-2 translation ini 98.7 5.6E-08 1.2E-12 112.6 11.7 116 46-229 86-201 (587)
195 COG1100 GTPase SAR1 and relate 98.7 4.9E-07 1.1E-11 91.6 17.0 121 48-234 6-130 (219)
196 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.7 1.2E-07 2.5E-12 97.2 12.2 114 49-230 3-120 (222)
197 cd04167 Snu114p Snu114p subfam 98.7 9.4E-08 2E-12 97.1 10.9 66 148-228 71-136 (213)
198 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.7 1.2E-07 2.6E-12 94.1 11.2 115 48-229 6-123 (182)
199 KOG0093 GTPase Rab3, small G p 98.7 2.4E-07 5.1E-12 86.2 12.2 165 49-310 23-189 (193)
200 cd04133 Rop_like Rop subfamily 98.7 2.5E-07 5.3E-12 91.4 13.2 115 49-230 3-120 (176)
201 KOG0084 GTPase Rab1/YPT1, smal 98.7 5.9E-08 1.3E-12 94.8 8.4 119 47-230 9-129 (205)
202 TIGR00437 feoB ferrous iron tr 98.7 1.8E-07 3.9E-12 108.9 13.9 70 149-229 42-113 (591)
203 PRK04004 translation initiatio 98.7 1.7E-07 3.7E-12 108.8 13.1 134 44-228 3-136 (586)
204 PRK05433 GTP-binding protein L 98.7 4.5E-07 9.8E-12 105.7 16.6 132 47-229 7-140 (600)
205 smart00176 RAN Ran (Ras-relate 98.7 1.5E-07 3.3E-12 94.8 11.1 67 148-229 44-113 (200)
206 TIGR00484 EF-G translation elo 98.7 1.4E-07 3.1E-12 112.0 12.7 135 46-231 9-143 (689)
207 KOG0078 GTP-binding protein SE 98.6 3.5E-07 7.5E-12 90.6 12.1 121 45-230 10-132 (207)
208 KOG0095 GTPase Rab30, small G 98.6 1E-06 2.2E-11 82.0 14.3 121 46-231 6-128 (213)
209 PF00071 Ras: Ras family; Int 98.6 1.6E-07 3.4E-12 90.3 9.4 115 49-229 1-118 (162)
210 cd04129 Rho2 Rho2 subfamily. 98.6 5.8E-07 1.3E-11 89.2 13.3 24 49-72 3-26 (187)
211 PRK00007 elongation factor G; 98.6 2.7E-07 5.8E-12 109.7 12.7 135 46-231 9-143 (693)
212 PRK12739 elongation factor G; 98.6 2.5E-07 5.5E-12 110.0 12.3 134 46-230 7-140 (691)
213 CHL00071 tufA elongation facto 98.6 2.8E-07 6E-12 103.1 11.5 68 148-230 75-143 (409)
214 cd01899 Ygr210 Ygr210 subfamil 98.6 2.6E-06 5.6E-11 91.8 18.4 37 50-86 1-37 (318)
215 KOG1490 GTP-binding protein CR 98.6 6.6E-08 1.4E-12 105.7 5.7 149 24-231 143-297 (620)
216 PRK00741 prfC peptide chain re 98.6 9.2E-07 2E-11 101.5 15.2 137 46-230 9-146 (526)
217 PF08477 Miro: Miro-like prote 98.5 5.8E-08 1.3E-12 88.6 3.9 24 49-72 1-24 (119)
218 PLN03127 Elongation factor Tu; 98.5 4.4E-07 9.4E-12 102.3 11.7 131 46-229 60-191 (447)
219 cd01883 EF1_alpha Eukaryotic e 98.5 2.4E-07 5.2E-12 94.6 8.7 21 50-70 2-22 (219)
220 COG0536 Obg Predicted GTPase [ 98.5 6.7E-07 1.5E-11 94.5 12.0 120 149-307 208-336 (369)
221 TIGR02836 spore_IV_A stage IV 98.5 7.5E-07 1.6E-11 96.8 12.6 166 30-229 5-194 (492)
222 KOG1547 Septin CDC10 and relat 98.5 1.3E-06 2.7E-11 87.8 13.0 80 148-229 104-198 (336)
223 TIGR01394 TypA_BipA GTP-bindin 98.5 7.1E-07 1.5E-11 103.8 13.1 68 148-230 64-131 (594)
224 PRK12317 elongation factor 1-a 98.5 2.4E-07 5.3E-12 104.1 8.8 81 132-229 69-153 (425)
225 KOG1489 Predicted GTP-binding 98.5 2.8E-07 6.1E-12 96.1 8.1 75 149-230 245-327 (366)
226 TIGR02034 CysN sulfate adenyly 98.5 9E-07 1.9E-11 98.8 12.6 83 132-231 65-149 (406)
227 PLN00023 GTP-binding protein; 98.5 6.3E-07 1.4E-11 95.8 10.7 28 45-72 19-46 (334)
228 cd01882 BMS1 Bms1. Bms1 is an 98.5 1.1E-06 2.3E-11 90.3 11.4 67 147-231 82-149 (225)
229 cd01900 YchF YchF subfamily. 98.5 4.7E-07 1E-11 95.4 8.7 37 50-86 1-37 (274)
230 PRK05506 bifunctional sulfate 98.5 1E-06 2.2E-11 103.9 12.4 66 148-229 104-171 (632)
231 PRK12736 elongation factor Tu; 98.4 9.4E-07 2E-11 98.3 11.3 68 147-229 74-142 (394)
232 KOG2486 Predicted GTPase [Gene 98.4 6.1E-07 1.3E-11 92.1 8.4 79 148-230 183-263 (320)
233 PTZ00258 GTP-binding protein; 98.4 8.9E-07 1.9E-11 97.4 10.3 44 45-88 19-62 (390)
234 PRK10218 GTP-binding protein; 98.4 5.1E-07 1.1E-11 104.9 8.9 68 148-230 68-135 (607)
235 cd04103 Centaurin_gamma Centau 98.4 3.6E-06 7.8E-11 81.5 13.4 24 49-72 2-25 (158)
236 COG4917 EutP Ethanolamine util 98.4 8.1E-07 1.7E-11 80.8 8.0 31 48-78 2-32 (148)
237 cd01858 NGP_1 NGP-1. Autoanti 98.4 9.3E-07 2E-11 85.4 9.1 54 21-77 79-132 (157)
238 PRK13351 elongation factor G; 98.4 1.7E-06 3.6E-11 103.1 12.9 134 46-230 7-140 (687)
239 PTZ00132 GTP-binding nuclear p 98.4 8.1E-06 1.8E-10 82.9 16.2 67 148-229 58-127 (215)
240 TIGR03680 eif2g_arch translati 98.4 2.4E-06 5.3E-11 95.4 13.4 67 148-230 80-149 (406)
241 TIGR00503 prfC peptide chain r 98.4 2.3E-06 4.9E-11 98.3 13.4 67 148-229 80-146 (527)
242 PRK12735 elongation factor Tu; 98.4 1.6E-06 3.5E-11 96.5 11.6 67 148-229 75-142 (396)
243 TIGR00485 EF-Tu translation el 98.4 9.8E-07 2.1E-11 98.2 9.8 130 48-230 13-143 (394)
244 PRK05124 cysN sulfate adenylyl 98.4 2E-06 4.4E-11 97.8 12.4 68 147-230 106-175 (474)
245 PRK00049 elongation factor Tu; 98.4 1.6E-06 3.6E-11 96.4 11.4 67 148-229 75-142 (396)
246 KOG2655 Septin family protein 98.4 1.6E-06 3.4E-11 93.4 10.7 84 148-233 79-176 (366)
247 PRK09601 GTP-binding protein Y 98.4 1.5E-06 3.3E-11 94.5 10.8 37 48-85 3-40 (364)
248 PLN03126 Elongation factor Tu; 98.4 2E-06 4.3E-11 97.6 11.8 68 148-230 144-212 (478)
249 COG5019 CDC3 Septin family pro 98.4 3E-06 6.6E-11 90.5 12.4 83 148-232 82-179 (373)
250 PF00025 Arf: ADP-ribosylation 98.3 7.7E-07 1.7E-11 87.7 6.3 69 148-230 58-130 (175)
251 PRK07560 elongation factor EF- 98.3 3.8E-06 8.2E-11 100.6 12.5 133 46-228 19-152 (731)
252 KOG0079 GTP-binding protein H- 98.3 4.7E-06 1E-10 77.7 10.2 118 47-230 8-127 (198)
253 TIGR00490 aEF-2 translation el 98.3 3.9E-06 8.6E-11 100.2 12.4 67 148-229 86-152 (720)
254 cd01873 RhoBTB RhoBTB subfamil 98.3 3.4E-06 7.3E-11 84.7 10.0 66 148-229 66-134 (195)
255 COG2229 Predicted GTPase [Gene 98.3 8.6E-06 1.9E-10 79.2 12.2 128 45-230 8-136 (187)
256 TIGR00483 EF-1_alpha translati 98.3 3.1E-06 6.7E-11 95.2 10.7 81 132-229 70-155 (426)
257 PRK04000 translation initiatio 98.3 6.9E-06 1.5E-10 91.9 13.3 23 48-70 10-32 (411)
258 KOG0080 GTPase Rab18, small G 98.3 1.6E-06 3.4E-11 81.9 6.8 115 47-228 11-130 (209)
259 KOG0098 GTPase Rab2, small G p 98.3 8.8E-06 1.9E-10 79.0 11.8 120 46-230 5-126 (216)
260 PTZ00416 elongation factor 2; 98.3 3.8E-06 8.2E-11 101.7 11.6 66 148-228 92-157 (836)
261 cd01855 YqeH YqeH. YqeH is an 98.3 2.7E-06 5.9E-11 84.8 8.6 45 20-72 108-152 (190)
262 COG1163 DRG Predicted GTPase [ 98.3 1.2E-06 2.5E-11 92.0 6.0 25 48-72 64-88 (365)
263 PLN00116 translation elongatio 98.2 5.3E-06 1.1E-10 100.7 12.2 66 148-228 98-163 (843)
264 KOG0092 GTPase Rab5/YPT51 and 98.2 1.6E-06 3.5E-11 84.6 6.2 115 49-229 7-124 (200)
265 cd04178 Nucleostemin_like Nucl 98.2 1.8E-06 3.9E-11 85.0 6.7 31 47-77 117-147 (172)
266 cd01849 YlqF_related_GTPase Yl 98.2 2.3E-06 5E-11 82.5 7.0 40 45-84 98-138 (155)
267 PF09439 SRPRB: Signal recogni 98.2 2E-06 4.3E-11 84.9 6.4 118 47-230 3-127 (181)
268 PRK09602 translation-associate 98.2 8.3E-06 1.8E-10 90.5 11.0 39 48-86 2-40 (396)
269 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 3.4E-06 7.4E-11 80.0 6.9 25 49-73 85-109 (141)
270 KOG4252 GTP-binding protein [S 98.1 8.5E-06 1.8E-10 78.3 8.8 67 149-230 70-139 (246)
271 KOG0091 GTPase Rab39, small G 98.1 2.4E-05 5.3E-10 74.2 11.1 69 148-229 58-130 (213)
272 KOG0075 GTP-binding ADP-ribosy 98.1 4.4E-06 9.6E-11 77.9 6.1 70 148-230 65-137 (186)
273 PRK12740 elongation factor G; 98.1 1.1E-05 2.5E-10 95.8 11.1 68 148-230 60-127 (668)
274 KOG0087 GTPase Rab11/YPT3, sma 98.1 1.1E-05 2.5E-10 79.8 8.4 119 46-229 13-133 (222)
275 PTZ00327 eukaryotic translatio 98.1 4E-05 8.6E-10 86.6 13.8 66 149-230 118-186 (460)
276 cd01851 GBP Guanylate-binding 98.1 1.8E-05 3.9E-10 81.3 10.0 38 46-83 6-46 (224)
277 TIGR03596 GTPase_YlqF ribosome 98.0 1.7E-05 3.7E-10 84.0 9.6 56 22-77 88-148 (276)
278 KOG0394 Ras-related GTPase [Ge 98.0 8.6E-06 1.9E-10 78.9 6.3 119 46-229 8-132 (210)
279 PRK09563 rbgA GTPase YlqF; Rev 98.0 2.7E-05 5.7E-10 83.1 10.8 56 22-77 91-151 (287)
280 KOG0410 Predicted GTP binding 98.0 2.8E-05 6.2E-10 81.5 10.5 128 43-229 174-308 (410)
281 PTZ00141 elongation factor 1- 98.0 2.3E-05 5E-10 88.5 10.1 22 49-70 9-30 (446)
282 PRK09435 membrane ATPase/prote 98.0 0.00036 7.7E-09 75.6 18.7 24 47-70 56-79 (332)
283 PLN00043 elongation factor 1-a 98.0 2.5E-05 5.3E-10 88.3 10.1 69 147-229 84-159 (447)
284 cd01856 YlqF YlqF. Proteins o 97.9 4.8E-05 1E-09 74.6 9.9 55 22-76 86-144 (171)
285 KOG1145 Mitochondrial translat 97.9 6.5E-05 1.4E-09 83.6 11.8 117 46-234 152-270 (683)
286 PRK12288 GTPase RsgA; Reviewed 97.9 2.1E-05 4.5E-10 85.9 8.0 27 49-75 207-233 (347)
287 PF03193 DUF258: Protein of un 97.9 6.7E-06 1.4E-10 79.6 3.6 28 48-75 36-63 (161)
288 TIGR00157 ribosome small subun 97.9 3E-05 6.6E-10 80.7 8.6 28 48-75 121-148 (245)
289 KOG0086 GTPase Rab4, small G p 97.9 4.4E-05 9.5E-10 71.6 8.6 69 148-229 58-128 (214)
290 KOG0073 GTP-binding ADP-ribosy 97.9 6.6E-05 1.4E-09 71.6 9.7 111 47-228 16-130 (185)
291 PRK12289 GTPase RsgA; Reviewed 97.9 2.4E-05 5.2E-10 85.4 7.8 28 49-76 174-201 (352)
292 TIGR00750 lao LAO/AO transport 97.9 0.00027 5.9E-09 75.8 15.3 25 46-70 33-57 (300)
293 TIGR01425 SRP54_euk signal rec 97.9 0.0002 4.3E-09 79.9 14.3 79 148-237 183-261 (429)
294 PRK11889 flhF flagellar biosyn 97.9 7.1E-05 1.5E-09 81.9 10.3 101 148-261 321-421 (436)
295 KOG0090 Signal recognition par 97.8 9.3E-05 2E-09 73.7 9.0 70 149-232 83-162 (238)
296 COG0532 InfB Translation initi 97.8 0.00014 3E-09 81.5 11.2 119 45-231 3-123 (509)
297 KOG0088 GTPase Rab21, small G 97.8 0.00016 3.4E-09 68.4 9.6 116 148-308 62-179 (218)
298 COG1161 Predicted GTPases [Gen 97.8 6.7E-05 1.5E-09 81.2 8.2 28 48-75 133-160 (322)
299 PRK13768 GTPase; Provisional 97.7 7.2E-05 1.6E-09 78.3 8.0 76 149-232 98-179 (253)
300 TIGR03597 GTPase_YqeH ribosome 97.7 7.1E-05 1.5E-09 82.3 8.2 42 21-71 137-178 (360)
301 COG0480 FusA Translation elong 97.7 0.00018 4E-09 84.7 11.5 136 46-231 9-144 (697)
302 KOG1532 GTPase XAB1, interacts 97.7 0.00087 1.9E-08 69.1 14.7 220 46-316 18-276 (366)
303 PRK14723 flhF flagellar biosyn 97.7 0.00031 6.6E-09 83.1 13.1 172 49-262 187-368 (767)
304 cd01859 MJ1464 MJ1464. This f 97.7 0.00022 4.9E-09 68.5 10.0 48 21-73 80-127 (156)
305 PRK14722 flhF flagellar biosyn 97.7 7E-05 1.5E-09 82.2 7.2 104 148-261 216-325 (374)
306 COG1162 Predicted GTPases [Gen 97.7 8.1E-05 1.8E-09 78.6 7.2 24 48-71 165-188 (301)
307 PRK13796 GTPase YqeH; Provisio 97.7 6.6E-05 1.4E-09 82.7 6.4 23 49-71 162-184 (365)
308 COG5256 TEF1 Translation elong 97.6 0.00036 7.7E-09 76.0 11.6 84 131-231 69-161 (428)
309 KOG1707 Predicted Ras related/ 97.6 0.0002 4.3E-09 80.5 9.5 118 48-233 10-133 (625)
310 PRK12727 flagellar biosynthesi 97.6 0.00064 1.4E-08 77.2 13.4 100 148-261 429-528 (559)
311 PRK00098 GTPase RsgA; Reviewed 97.6 0.00018 3.9E-09 77.1 8.8 25 48-72 165-189 (298)
312 KOG0395 Ras-related GTPase [Ge 97.6 0.00018 4E-09 72.3 8.2 117 47-230 3-123 (196)
313 PRK14721 flhF flagellar biosyn 97.6 0.00054 1.2E-08 76.4 12.4 101 148-261 270-370 (420)
314 PRK06731 flhF flagellar biosyn 97.6 0.0013 2.8E-08 69.4 14.4 101 148-261 155-255 (270)
315 PRK10416 signal recognition pa 97.6 0.00081 1.8E-08 72.7 13.2 96 148-253 197-295 (318)
316 PRK05703 flhF flagellar biosyn 97.5 0.0011 2.3E-08 74.5 13.9 102 148-261 300-401 (424)
317 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00024 5.2E-09 75.8 8.3 27 48-74 162-188 (287)
318 KOG0097 GTPase Rab14, small G 97.5 0.00034 7.4E-09 64.8 8.1 117 48-230 12-131 (215)
319 PF04670 Gtr1_RagA: Gtr1/RagA 97.5 0.00028 6.1E-09 72.7 8.4 119 49-231 1-127 (232)
320 cd03114 ArgK-like The function 97.5 0.00084 1.8E-08 64.4 11.1 21 50-70 2-22 (148)
321 cd03112 CobW_like The function 97.5 0.00072 1.6E-08 65.5 10.2 23 48-70 1-23 (158)
322 PRK12726 flagellar biosynthesi 97.5 0.0012 2.7E-08 72.1 12.8 172 48-260 207-385 (407)
323 TIGR00092 GTP-binding protein 97.5 0.00027 5.9E-09 77.2 7.6 36 49-84 4-40 (368)
324 PRK12723 flagellar biosynthesi 97.4 0.00074 1.6E-08 74.7 10.6 102 148-261 255-356 (388)
325 PRK12724 flagellar biosynthesi 97.4 0.00084 1.8E-08 74.5 10.8 103 148-261 300-403 (432)
326 PRK14974 cell division protein 97.4 0.00054 1.2E-08 74.4 8.9 92 148-252 223-314 (336)
327 PF00448 SRP54: SRP54-type pro 97.4 0.0011 2.4E-08 66.7 10.3 95 148-256 84-179 (196)
328 COG1703 ArgK Putative periplas 97.4 0.003 6.4E-08 66.4 13.5 25 46-70 50-74 (323)
329 COG0012 Predicted GTPase, prob 97.3 0.00041 8.9E-09 75.0 7.3 37 48-84 3-39 (372)
330 PTZ00099 rab6; Provisional 97.3 0.0011 2.5E-08 65.4 9.8 68 148-229 29-99 (176)
331 KOG1486 GTP-binding protein DR 97.3 0.00018 3.8E-09 73.1 3.9 24 48-71 63-86 (364)
332 TIGR00064 ftsY signal recognit 97.3 0.0021 4.6E-08 67.9 12.2 94 148-252 155-252 (272)
333 KOG1144 Translation initiation 97.3 0.0013 2.7E-08 75.6 10.7 135 43-228 471-605 (1064)
334 PRK00771 signal recognition pa 97.3 0.001 2.2E-08 74.7 9.9 92 149-253 177-268 (437)
335 PRK10867 signal recognition pa 97.3 0.0017 3.6E-08 72.9 11.4 93 148-253 184-276 (433)
336 cd03115 SRP The signal recogni 97.3 0.004 8.6E-08 60.9 12.8 78 148-236 83-160 (173)
337 KOG0081 GTPase Rab27, small G 97.3 0.00032 6.9E-09 66.4 4.6 70 148-230 67-139 (219)
338 KOG0070 GTP-binding ADP-ribosy 97.2 0.00027 5.9E-09 68.9 4.1 69 148-230 61-133 (181)
339 PF03029 ATP_bind_1: Conserved 97.2 0.00056 1.2E-08 70.9 6.7 37 52-94 1-37 (238)
340 KOG3883 Ras family small GTPas 97.2 0.0028 6E-08 60.0 10.5 70 149-232 61-135 (198)
341 KOG0462 Elongation factor-type 97.2 0.0015 3.2E-08 73.2 9.8 133 47-230 60-192 (650)
342 KOG0468 U5 snRNP-specific prot 97.2 0.0027 5.9E-08 72.2 11.9 133 47-228 128-262 (971)
343 COG3276 SelB Selenocysteine-sp 97.2 0.0021 4.5E-08 70.6 10.2 68 149-231 51-119 (447)
344 PRK06995 flhF flagellar biosyn 97.1 0.0033 7.3E-08 71.3 11.6 100 149-261 336-435 (484)
345 KOG3859 Septins (P-loop GTPase 97.1 0.00099 2.1E-08 68.7 6.5 135 48-232 43-193 (406)
346 COG1217 TypA Predicted membran 97.1 0.0011 2.4E-08 72.8 7.0 134 46-232 4-137 (603)
347 KOG1491 Predicted GTP-binding 97.0 0.00068 1.5E-08 71.9 4.8 104 46-196 19-125 (391)
348 PF03308 ArgK: ArgK protein; 97.0 0.0027 5.8E-08 65.8 9.0 25 46-70 28-52 (266)
349 PRK14845 translation initiatio 97.0 0.0025 5.5E-08 78.2 10.2 68 147-229 525-592 (1049)
350 TIGR00073 hypB hydrogenase acc 97.0 0.0058 1.3E-07 61.8 11.1 25 46-70 21-45 (207)
351 TIGR03348 VI_IcmF type VI secr 97.0 0.0059 1.3E-07 77.1 13.3 53 23-77 81-139 (1169)
352 KOG0074 GTP-binding ADP-ribosy 96.9 0.0028 6E-08 59.2 7.2 114 48-230 18-134 (185)
353 COG1419 FlhF Flagellar GTP-bin 96.9 0.0086 1.9E-07 65.8 12.3 171 48-262 204-383 (407)
354 KOG1424 Predicted GTP-binding 96.9 0.0014 3E-08 73.0 5.6 26 47-72 314-339 (562)
355 KOG0071 GTP-binding ADP-ribosy 96.8 0.02 4.3E-07 53.6 12.1 68 149-230 62-133 (180)
356 TIGR00959 ffh signal recogniti 96.8 0.0042 9.2E-08 69.7 8.7 93 148-253 183-275 (428)
357 COG5192 BMS1 GTP-binding prote 96.7 0.0076 1.6E-07 67.4 9.6 45 187-232 135-180 (1077)
358 KOG0393 Ras-related small GTPa 96.7 0.0014 3E-08 65.5 3.6 115 49-229 6-123 (198)
359 KOG1143 Predicted translation 96.6 0.0024 5.2E-08 68.3 4.9 69 149-232 250-320 (591)
360 COG4108 PrfC Peptide chain rel 96.6 0.007 1.5E-07 66.4 8.4 132 48-229 13-147 (528)
361 KOG2484 GTPase [General functi 96.5 0.0025 5.4E-08 69.0 4.3 30 49-78 254-283 (435)
362 COG0050 TufB GTPases - transla 96.4 0.015 3.2E-07 60.9 9.3 129 49-230 14-143 (394)
363 KOG2485 Conserved ATP/GTP bind 96.4 0.0072 1.6E-07 63.8 7.0 25 46-70 142-166 (335)
364 KOG0458 Elongation factor 1 al 96.3 0.0054 1.2E-07 69.4 5.8 89 131-236 239-336 (603)
365 PRK01889 GTPase RsgA; Reviewed 96.3 0.0078 1.7E-07 66.2 6.9 24 49-72 197-220 (356)
366 COG0481 LepA Membrane GTPase L 96.3 0.018 3.8E-07 63.9 9.3 132 48-230 10-143 (603)
367 PRK10463 hydrogenase nickel in 96.2 0.05 1.1E-06 57.9 12.3 26 45-70 102-127 (290)
368 KOG0076 GTP-binding ADP-ribosy 96.2 0.0081 1.7E-07 58.2 5.5 69 149-230 70-141 (197)
369 cd01859 MJ1464 MJ1464. This f 96.2 0.019 4.2E-07 55.0 8.2 54 174-229 2-55 (156)
370 COG0541 Ffh Signal recognition 96.2 0.035 7.6E-07 61.3 10.9 77 148-235 183-259 (451)
371 PF05879 RHD3: Root hair defec 96.1 1.7 3.7E-05 52.5 25.8 23 53-76 1-23 (742)
372 KOG1487 GTP-binding protein DR 96.1 0.0063 1.4E-07 62.4 4.4 29 49-78 61-89 (358)
373 KOG0461 Selenocysteine-specifi 95.8 0.12 2.7E-06 55.2 12.6 68 148-234 70-141 (522)
374 COG5257 GCD11 Translation init 95.8 0.07 1.5E-06 56.7 10.5 42 49-92 12-53 (415)
375 KOG2203 GTP-binding protein [G 95.7 0.014 2.9E-07 65.5 5.1 41 32-72 21-62 (772)
376 KOG4181 Uncharacterized conser 95.7 0.059 1.3E-06 57.5 9.5 27 45-71 186-212 (491)
377 KOG0077 Vesicle coat complex C 95.6 0.1 2.3E-06 50.4 9.9 129 32-232 7-138 (193)
378 COG5258 GTPBP1 GTPase [General 95.5 0.022 4.9E-07 61.5 5.6 170 22-231 68-271 (527)
379 KOG2423 Nucleolar GTPase [Gene 95.2 0.029 6.2E-07 60.8 5.4 27 46-72 304-332 (572)
380 TIGR02868 CydC thiol reductant 95.2 0.084 1.8E-06 61.2 9.8 22 49-70 363-384 (529)
381 COG2895 CysN GTPases - Sulfate 95.0 0.084 1.8E-06 56.8 8.2 153 45-234 4-158 (431)
382 KOG0780 Signal recognition par 94.9 0.039 8.5E-07 59.8 5.7 75 148-235 184-260 (483)
383 COG3840 ThiQ ABC-type thiamine 94.8 0.026 5.5E-07 55.6 3.5 28 49-77 27-54 (231)
384 COG1341 Predicted GTPase or GT 94.8 0.083 1.8E-06 58.0 7.7 25 46-70 72-96 (398)
385 KOG0072 GTP-binding ADP-ribosy 94.7 0.14 3E-06 48.4 7.8 70 148-230 62-134 (182)
386 cd01855 YqeH YqeH. YqeH is an 94.6 0.17 3.6E-06 50.3 9.0 54 173-230 23-76 (190)
387 cd01858 NGP_1 NGP-1. Autoanti 94.5 0.085 1.9E-06 50.7 6.5 50 179-230 3-54 (157)
388 COG1136 SalX ABC-type antimicr 94.4 0.035 7.6E-07 56.9 3.6 56 171-227 147-204 (226)
389 PF13555 AAA_29: P-loop contai 94.4 0.042 9.1E-07 44.6 3.3 21 49-69 25-45 (62)
390 KOG0464 Elongation factor G [T 94.3 0.02 4.3E-07 62.1 1.5 133 48-231 38-170 (753)
391 cd00071 GMPK Guanosine monopho 94.1 0.047 1E-06 51.6 3.5 21 50-70 2-22 (137)
392 TIGR03796 NHPM_micro_ABC1 NHPM 94.1 0.23 4.9E-06 59.8 10.3 22 49-70 507-528 (710)
393 PF00005 ABC_tran: ABC transpo 94.0 0.04 8.8E-07 51.3 3.0 23 49-71 13-35 (137)
394 cd01856 YlqF YlqF. Proteins o 94.0 0.22 4.8E-06 48.6 8.2 53 174-230 9-61 (171)
395 COG1101 PhnK ABC-type uncharac 93.9 0.046 1E-06 55.2 3.2 27 49-76 34-60 (263)
396 PRK11537 putative GTP-binding 93.8 0.29 6.4E-06 53.0 9.4 25 46-70 3-27 (318)
397 COG0552 FtsY Signal recognitio 93.8 0.082 1.8E-06 56.7 5.0 96 148-253 222-320 (340)
398 PRK13695 putative NTPase; Prov 93.8 0.76 1.7E-05 44.9 11.6 22 49-70 2-23 (174)
399 COG1116 TauB ABC-type nitrate/ 93.8 0.049 1.1E-06 56.2 3.1 24 49-72 31-54 (248)
400 TIGR03499 FlhF flagellar biosy 93.7 0.093 2E-06 55.9 5.4 22 49-70 196-217 (282)
401 TIGR02475 CobW cobalamin biosy 93.7 0.73 1.6E-05 50.4 12.4 25 46-70 3-27 (341)
402 cd01849 YlqF_related_GTPase Yl 93.7 0.25 5.4E-06 47.4 7.9 42 188-230 2-44 (155)
403 COG3640 CooC CO dehydrogenase 93.5 0.23 4.9E-06 50.9 7.4 62 149-228 135-198 (255)
404 cd01130 VirB11-like_ATPase Typ 93.5 0.062 1.4E-06 53.4 3.4 22 49-70 27-48 (186)
405 KOG0463 GTP-binding protein GP 93.5 0.11 2.4E-06 56.0 5.2 77 140-231 211-289 (641)
406 cd01857 HSR1_MMR1 HSR1/MMR1. 93.4 0.11 2.3E-06 49.2 4.7 52 177-230 4-57 (141)
407 TIGR03263 guanyl_kin guanylate 93.4 0.077 1.7E-06 52.0 3.9 22 49-70 3-24 (180)
408 KOG0467 Translation elongation 93.4 0.15 3.3E-06 59.6 6.6 65 148-227 72-136 (887)
409 PRK11174 cysteine/glutathione 93.3 0.29 6.2E-06 57.5 9.2 25 49-75 378-402 (588)
410 TIGR03596 GTPase_YlqF ribosome 93.3 0.38 8.3E-06 51.0 9.2 51 176-230 13-63 (276)
411 PF03205 MobB: Molybdopterin g 93.3 0.067 1.5E-06 50.8 3.1 23 48-70 1-23 (140)
412 PF13521 AAA_28: AAA domain; P 93.3 0.052 1.1E-06 52.5 2.4 22 49-70 1-22 (163)
413 COG4619 ABC-type uncharacteriz 93.2 0.95 2.1E-05 44.3 10.7 23 49-71 31-53 (223)
414 KOG2749 mRNA cleavage and poly 93.1 1.2 2.5E-05 48.4 12.2 39 32-70 85-126 (415)
415 COG4107 PhnK ABC-type phosphon 93.1 0.083 1.8E-06 51.6 3.3 30 49-80 34-63 (258)
416 COG0194 Gmk Guanylate kinase [ 93.1 0.06 1.3E-06 53.2 2.4 35 50-84 7-41 (191)
417 PRK00300 gmk guanylate kinase; 93.1 0.081 1.8E-06 53.1 3.5 36 49-84 7-43 (205)
418 TIGR03797 NHPM_micro_ABC2 NHPM 92.9 0.47 1E-05 56.9 10.2 22 49-70 481-502 (686)
419 cd03225 ABC_cobalt_CbiO_domain 92.8 0.1 2.3E-06 52.5 3.9 28 49-78 29-56 (211)
420 PF09547 Spore_IV_A: Stage IV 92.7 0.64 1.4E-05 51.6 9.8 168 30-229 5-194 (492)
421 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.6 0.1 2.2E-06 52.9 3.5 28 49-78 32-59 (218)
422 PLN03232 ABC transporter C fam 92.5 0.61 1.3E-05 60.8 11.1 22 49-70 645-666 (1495)
423 PF02263 GBP: Guanylate-bindin 92.5 0.43 9.3E-06 50.2 8.1 24 47-70 21-44 (260)
424 PRK14737 gmk guanylate kinase; 92.5 0.13 2.9E-06 51.2 4.0 22 49-70 6-27 (186)
425 TIGR01360 aden_kin_iso1 adenyl 92.4 0.11 2.3E-06 51.2 3.2 23 46-68 2-24 (188)
426 PRK09563 rbgA GTPase YlqF; Rev 92.3 0.57 1.2E-05 50.0 8.9 51 176-230 16-66 (287)
427 PRK13851 type IV secretion sys 92.3 0.11 2.4E-06 56.8 3.5 31 49-81 164-194 (344)
428 cd03280 ABC_MutS2 MutS2 homolo 92.3 2 4.3E-05 43.1 12.4 20 49-68 30-49 (200)
429 cd01983 Fer4_NifH The Fer4_Nif 92.2 0.61 1.3E-05 39.7 7.5 21 50-70 2-22 (99)
430 COG4988 CydD ABC-type transpor 92.2 0.13 2.8E-06 58.9 3.9 29 48-78 348-376 (559)
431 TIGR00958 3a01208 Conjugate Tr 92.2 0.78 1.7E-05 55.3 10.8 22 49-70 509-530 (711)
432 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.1 0.12 2.5E-06 49.2 3.0 23 49-71 28-50 (144)
433 COG1135 AbcC ABC-type metal io 92.1 0.89 1.9E-05 48.5 9.7 90 150-251 126-221 (339)
434 cd03222 ABC_RNaseL_inhibitor T 92.1 0.12 2.6E-06 51.2 3.2 23 49-71 27-49 (177)
435 cd03258 ABC_MetN_methionine_tr 92.1 0.15 3.2E-06 52.4 3.9 28 49-78 33-60 (233)
436 TIGR01166 cbiO cobalt transpor 92.0 0.13 2.7E-06 51.2 3.3 23 49-71 20-42 (190)
437 cd03224 ABC_TM1139_LivF_branch 92.0 0.14 3E-06 52.0 3.6 23 49-71 28-50 (222)
438 cd03261 ABC_Org_Solvent_Resist 92.0 0.13 2.8E-06 52.9 3.4 22 49-70 28-49 (235)
439 PRK13651 cobalt transporter AT 92.0 0.14 3.1E-06 55.0 3.8 29 49-79 35-63 (305)
440 TIGR00960 3a0501s02 Type II (G 91.9 0.12 2.7E-06 52.3 3.1 22 49-70 31-52 (216)
441 PRK13541 cytochrome c biogenes 91.9 0.16 3.5E-06 50.7 3.8 23 49-71 28-50 (195)
442 cd03215 ABC_Carb_Monos_II This 91.9 0.17 3.6E-06 50.0 3.9 23 49-71 28-50 (182)
443 cd03264 ABC_drug_resistance_li 91.9 0.13 2.8E-06 51.9 3.2 28 49-78 27-54 (211)
444 cd03254 ABCC_Glucan_exporter_l 91.8 0.16 3.5E-06 51.9 3.9 28 49-78 31-58 (229)
445 PF06858 NOG1: Nucleolar GTP-b 91.8 0.29 6.2E-06 39.1 4.3 51 176-226 4-58 (58)
446 cd03232 ABC_PDR_domain2 The pl 91.8 0.16 3.4E-06 50.7 3.7 23 49-71 35-57 (192)
447 TIGR01978 sufC FeS assembly AT 91.8 0.17 3.6E-06 52.2 4.0 22 49-70 28-49 (243)
448 TIGR02673 FtsE cell division A 91.8 0.13 2.8E-06 52.0 3.1 23 49-71 30-52 (214)
449 cd03265 ABC_DrrA DrrA is the A 91.8 0.14 3E-06 52.2 3.3 22 49-70 28-49 (220)
450 cd03217 ABC_FeS_Assembly ABC-t 91.8 0.17 3.7E-06 50.8 4.0 23 49-71 28-50 (200)
451 PRK13540 cytochrome c biogenes 91.8 0.17 3.6E-06 50.8 3.9 24 48-71 28-51 (200)
452 KOG0057 Mitochondrial Fe/S clu 91.8 0.58 1.3E-05 53.3 8.3 57 171-230 492-551 (591)
453 COG1126 GlnQ ABC-type polar am 91.8 0.17 3.7E-06 51.2 3.8 74 173-254 143-218 (240)
454 PF13191 AAA_16: AAA ATPase do 91.7 0.18 3.9E-06 49.1 4.0 40 28-70 8-47 (185)
455 cd03238 ABC_UvrA The excision 91.7 0.14 3E-06 50.6 3.2 21 49-69 23-43 (176)
456 COG4559 ABC-type hemin transpo 91.7 0.16 3.4E-06 51.3 3.5 27 49-76 29-55 (259)
457 cd03269 ABC_putative_ATPase Th 91.7 0.14 3E-06 51.7 3.2 22 49-70 28-49 (210)
458 COG3839 MalK ABC-type sugar tr 91.7 0.14 3E-06 55.6 3.3 23 49-71 31-53 (338)
459 cd03263 ABC_subfamily_A The AB 91.7 0.14 2.9E-06 52.1 3.1 23 49-71 30-52 (220)
460 KOG0083 GTPase Rab26/Rab37, sm 91.7 0.16 3.5E-06 47.1 3.2 70 148-230 47-118 (192)
461 cd03249 ABC_MTABC3_MDL1_MDL2 M 91.7 0.15 3.3E-06 52.4 3.5 28 49-78 31-58 (238)
462 TIGR03608 L_ocin_972_ABC putat 91.7 0.16 3.4E-06 51.0 3.5 22 49-70 26-47 (206)
463 cd00267 ABC_ATPase ABC (ATP-bi 91.6 0.19 4.1E-06 48.3 3.8 30 48-79 26-55 (157)
464 cd03226 ABC_cobalt_CbiO_domain 91.6 0.15 3.3E-06 51.2 3.3 23 49-71 28-50 (205)
465 cd03216 ABC_Carb_Monos_I This 91.5 0.16 3.4E-06 49.3 3.3 23 49-71 28-50 (163)
466 TIGR02315 ABC_phnC phosphonate 91.5 0.14 3.1E-06 52.8 3.1 23 49-71 30-52 (243)
467 COG1120 FepC ABC-type cobalami 91.5 0.18 3.8E-06 52.8 3.8 21 50-70 31-51 (258)
468 PRK15177 Vi polysaccharide exp 91.5 0.18 3.9E-06 51.3 3.8 30 49-80 15-44 (213)
469 cd03293 ABC_NrtD_SsuB_transpor 91.5 0.15 3.3E-06 51.8 3.3 23 49-71 32-54 (220)
470 cd03218 ABC_YhbG The ABC trans 91.5 0.16 3.5E-06 52.0 3.5 23 49-71 28-50 (232)
471 COG0523 Putative GTPases (G3E 91.5 0.99 2.1E-05 49.0 9.6 25 47-71 1-25 (323)
472 cd03260 ABC_PstB_phosphate_tra 91.5 0.14 3.1E-06 52.3 3.0 23 49-71 28-50 (227)
473 cd03369 ABCC_NFT1 Domain 2 of 91.5 0.18 4E-06 50.7 3.8 29 49-79 36-64 (207)
474 CHL00131 ycf16 sulfate ABC tra 91.4 0.18 3.8E-06 52.5 3.7 22 49-70 35-56 (252)
475 PRK14250 phosphate ABC transpo 91.4 0.19 4.1E-06 52.0 3.9 28 49-78 31-58 (241)
476 PRK10078 ribose 1,5-bisphospho 91.4 0.15 3.3E-06 50.5 3.1 23 49-71 4-26 (186)
477 cd03243 ABC_MutS_homologs The 91.4 3.5 7.6E-05 41.3 13.0 23 49-71 31-53 (202)
478 COG0410 LivF ABC-type branched 91.4 0.18 3.9E-06 51.5 3.6 28 49-78 31-58 (237)
479 cd03259 ABC_Carb_Solutes_like 91.4 0.16 3.6E-06 51.2 3.4 22 49-70 28-49 (213)
480 cd03266 ABC_NatA_sodium_export 91.4 0.15 3.3E-06 51.6 3.1 22 49-70 33-54 (218)
481 cd03292 ABC_FtsE_transporter F 91.4 0.17 3.6E-06 51.1 3.4 22 49-70 29-50 (214)
482 PRK13539 cytochrome c biogenes 91.3 0.2 4.4E-06 50.5 3.9 23 49-71 30-52 (207)
483 PRK11629 lolD lipoprotein tran 91.3 0.16 3.5E-06 52.1 3.3 22 49-70 37-58 (233)
484 TIGR02211 LolD_lipo_ex lipopro 91.3 0.18 3.8E-06 51.3 3.5 23 49-71 33-55 (221)
485 PRK13543 cytochrome c biogenes 91.3 0.19 4.2E-06 50.9 3.8 28 49-78 39-66 (214)
486 cd03262 ABC_HisP_GlnQ_permease 91.3 0.16 3.5E-06 51.2 3.1 28 49-78 28-55 (213)
487 PF13207 AAA_17: AAA domain; P 91.3 0.17 3.8E-06 45.9 3.1 22 49-70 1-22 (121)
488 cd03236 ABC_RNaseL_inhibitor_d 91.3 0.18 3.8E-06 52.9 3.5 30 49-80 28-57 (255)
489 PRK14738 gmk guanylate kinase; 91.2 0.2 4.4E-06 50.6 3.8 22 49-70 15-36 (206)
490 cd03229 ABC_Class3 This class 91.2 0.18 3.9E-06 49.6 3.4 22 49-70 28-49 (178)
491 PRK15112 antimicrobial peptide 91.2 0.2 4.3E-06 52.7 3.9 28 49-78 41-68 (267)
492 TIGR01189 ccmA heme ABC export 91.2 0.19 4.1E-06 50.2 3.5 23 49-71 28-50 (198)
493 cd03245 ABCC_bacteriocin_expor 91.2 0.2 4.3E-06 50.9 3.7 28 49-78 32-59 (220)
494 COG3638 ABC-type phosphate/pho 91.2 0.2 4.4E-06 51.3 3.6 22 49-70 32-53 (258)
495 cd03256 ABC_PhnC_transporter A 91.1 0.17 3.6E-06 52.2 3.1 23 49-71 29-51 (241)
496 cd03268 ABC_BcrA_bacitracin_re 91.1 0.17 3.7E-06 50.9 3.1 28 49-78 28-55 (208)
497 cd03251 ABCC_MsbA MsbA is an e 91.1 0.19 4.2E-06 51.5 3.6 23 49-71 30-52 (234)
498 KOG3886 GTP-binding protein [S 91.1 0.34 7.4E-06 49.4 5.1 75 149-233 54-134 (295)
499 PRK13641 cbiO cobalt transport 91.1 0.2 4.4E-06 53.3 3.8 28 49-78 35-62 (287)
500 cd03230 ABC_DR_subfamily_A Thi 91.0 0.19 4.1E-06 49.2 3.3 23 49-71 28-50 (173)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=5.4e-106 Score=921.41 Aligned_cols=615 Identities=41% Similarity=0.601 Sum_probs=555.4
Q ss_pred CCcchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCC-ccce
Q 005171 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTD-EEYG 99 (710)
Q Consensus 21 ~~~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~-~~~~ 99 (710)
+++.+++++|++||.|..+|....+.+|+|+|||+||+||||+||+|+|++|||||.|+|||||++++|.+.... .+|+
T Consensus 3 ~~~~li~~vn~lqd~~~~l~~~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~ 82 (657)
T KOG0446|consen 3 LMRLLIPLSNPLQDKLEILGSSSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEA 82 (657)
T ss_pred hhhhccccchHHHHHHHHhcCCCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccch
Confidence 678899999999999999997778999999999999999999999999999999999999999999999988654 7999
Q ss_pred eee-cCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHH
Q 005171 100 EFL-HLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMI 178 (710)
Q Consensus 100 ~~~-~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv 178 (710)
+|. |.+++.++||++++++|..+|++.+|.++++|+.+|.++|++|++++||+||+||++++++++||.|++.++++|+
T Consensus 83 ~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi 162 (657)
T KOG0446|consen 83 SFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMI 162 (657)
T ss_pred hccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceEEEEcCChh
Q 005171 179 MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQE 258 (710)
Q Consensus 179 ~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~ 258 (710)
+.|+..++++||+|++||.|+++++++++++++||.|.|||+|+||+|+|++|+++.+++.|+.+++++||++|+||+|+
T Consensus 163 ~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g~v~vvnR~q~ 242 (657)
T KOG0446|consen 163 EEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVGYVGVVNRSQS 242 (657)
T ss_pred HHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCccccccceeeeeccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccHHHHHHHHHHhccCCCccccccccCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCCCCCC
Q 005171 259 DIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITES 338 (710)
Q Consensus 259 di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~ 338 (710)
|+..++++.+++..|..||.+||.|..+.+++|+++|.+.|+..|..||++++|.++..|+.++.++++||..||. ...
T Consensus 243 di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~~~g~-~~~ 321 (657)
T KOG0446|consen 243 IIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDELNRIGA-VDV 321 (657)
T ss_pred hhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcc-cCC
Confidence 9999999999999999999999999999888999999999999999999999999999999999999999999997 333
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhccCCccccccccccccchHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHhhcCCCCC
Q 005171 339 KAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSA 418 (710)
Q Consensus 339 ~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~f~~~l~~~~~~~~l~~~dI~~~i~n~~G~~~~ 418 (710)
.......++.+++.|+..|...++|..+..++.+++|||||+|+||+.|...+..++|.+.+...+|+++++|++|++++
T Consensus 322 ~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i~~~~G~~~~ 401 (657)
T KOG0446|consen 322 DLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLVSEASGIRPS 401 (657)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHHHhccCCCcc
Confidence 34456789999999999999999999887658899999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhhhh-ccCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 005171 419 LFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVN-ELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHII 497 (710)
Q Consensus 419 lf~p~~~fe~lvk~~i~~l~~Psl~c~~~V~~eL~~i~~~~~~~-~l~rfp~L~~~i~~vv~~~l~e~~~~a~~~v~~li 497 (710)
+|+|+.+||.+|++||+++++|+++||+.|+++|++++++|... ++.|||.|+..+.+++.+++++++.+++++|.++|
T Consensus 402 lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~~l~rfp~l~~~~~~~~~~~~~~~~~~t~~~v~~~i 481 (657)
T KOG0446|consen 402 LFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRATELKRFPVLYSELVEIASSLIAEGLDETKKAVKNLI 481 (657)
T ss_pred ccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999976 89999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCCCCCchH-HHHHHHHhhhhcCCCCCcccCCCCCCCCCCCCcccchhhhHhHhhhccccccCCCCCCcc
Q 005171 498 EMEMDYINTSHPNFIGGSK-AVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGVRPTV 576 (710)
Q Consensus 498 ~~E~~yInT~hpdF~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (710)
+||.+||||+||||.+++. |+........ + ..+ | .. +.
T Consensus 482 ~~e~~yinT~h~df~~~~~~al~~~~~~~~--~-------------------~~~------~-------~~------~~- 520 (657)
T KOG0446|consen 482 DLEQSYLNTDHPDFRSLTDSALSSVTSPSI--A-------------------AMK------L-------IS------AQ- 520 (657)
T ss_pred HHHHHHhcCcChhhhhhHHHHHHHhhcccc--c-------------------ccc------c-------cc------cc-
Confidence 9999999999999999986 5544432100 0 000 0 00 00
Q ss_pred cccccCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCccchhhHHhhhhcCCCCcccCCCCCCChhHHHHHHH
Q 005171 577 EVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSEQENVEIAV 656 (710)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~rE~~e~e~ 656 (710)
... .......++++ .+++. + ....+...+..+.....++++|..+++.
T Consensus 521 ~~~---~~~~~~~~~~~--~~~~~---------~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (657)
T KOG0446|consen 521 LLK---EELGECNSALK--AIKNA---------V------------------GSIRLDPSDIVLSRALVLKKRECKETEE 568 (657)
T ss_pred ccc---cccccccchhh--hhcch---------h------------------hhhhhcccchhhhhhhhcchhhhHHHHH
Confidence 000 00000011111 11100 0 0134445555666667889999999999
Q ss_pred HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcc------ccc-CCCccchhhhccC
Q 005171 657 TKLLLRSYYDIVRKNIEDSIPKAVMHFLVSGTINGIL------LLN-KPSPSFMLCESYK 709 (710)
Q Consensus 657 Ir~LI~SYF~IVRK~I~D~VPKAIMhfLVN~~k~~l~------~~~-~~~~~~~~~~~~~ 709 (710)
|++++.|||+||+|+|.|+|||||||+|||++|++|+ ||. +.+..+||.|++.
T Consensus 569 i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~~~~~~~~ll~E~~~ 628 (657)
T KOG0446|consen 569 ISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYAGDEQLESLLKEDPR 628 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHccCHH
Confidence 9999999999999999999999999999999999999 999 9999999999975
No 2
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=5.7e-58 Score=487.68 Aligned_cols=287 Identities=46% Similarity=0.775 Sum_probs=254.2
Q ss_pred HHHHhCCccccccceEEEEcCChhhhhhcccHHHHHHHHHHhccCCCccccccccCCchhHHHHHHHHHHHHHHhhhhhH
Q 005171 235 RNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGL 314 (710)
Q Consensus 235 ~~~l~~~~~~l~lG~~~V~nrs~~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l 314 (710)
.++|.|+++||++||++|+||+|+|++.+.|+.++++.|.+||++||+|+...++|||++|+.+|+++|.+||+++||.|
T Consensus 2 ~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l 81 (295)
T PF01031_consen 2 MDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSL 81 (295)
T ss_dssp HHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHH
Confidence 57899999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCC-ChhhhHHHHHHHHHHHHHHHHhhccCCcc-ccccccccccchHHHHHHHHHHHhhh
Q 005171 315 KSRISSALVSVAKEHASYGEITE-SKAGQGALLLNILSKYSEAFSSMVEGKNE-EMSTSELSGGARIHYIFQSIFVKSLE 392 (710)
Q Consensus 315 ~~~i~~~l~~~~~eL~~lg~~~~-~~~~~~~~ll~~~~~f~~~~~~~i~G~~~-~~~~~~l~ggari~~~f~~~f~~~l~ 392 (710)
+.+|+.+|.+++.+|+.||++++ +..+++.+|++++.+|++.|+++|+|.|. .+...++.||+||+++|++.|...+.
T Consensus 82 ~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~ 161 (295)
T PF01031_consen 82 KSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLE 161 (295)
T ss_dssp HHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhh
Confidence 99999999999999999999988 77789999999999999999999999998 47888999999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhhhhccCCchHHHH
Q 005171 393 EVDPCEDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRK 472 (710)
Q Consensus 393 ~~~~~~~l~~~dI~~~i~n~~G~~~~lf~p~~~fe~lvk~~i~~l~~Psl~c~~~V~~eL~~i~~~~~~~~l~rfp~L~~ 472 (710)
.++++.++++++|+++|+|++|+++|+|+|+.+|+.||++||++|++||++|++.|+++|.+++.+|+.++|.+||.|++
T Consensus 162 ~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~ 241 (295)
T PF01031_consen 162 KIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFPNLKE 241 (295)
T ss_dssp HTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHH
T ss_pred hhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHH
Q 005171 473 RMDEVIGNFLREGLEPSETMIGHIIEMEMDYINTSHPNFIGGSKAVEIA 521 (710)
Q Consensus 473 ~i~~vv~~~l~e~~~~a~~~v~~li~~E~~yInT~hpdF~~~~~~~~~~ 521 (710)
++.+++.++++++..+|+++|++||+||++||||+||||.++..++...
T Consensus 242 ~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T~~~~f~~~~~~~~~~ 290 (295)
T PF01031_consen 242 AIKEAVQQLLEECREPAKEMIENLIDMELSYINTQHPDFLGELQAIRQE 290 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTSTT--TTS------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877653
No 3
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=6.4e-47 Score=387.47 Aligned_cols=239 Identities=63% Similarity=1.024 Sum_probs=227.5
Q ss_pred CcchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceee
Q 005171 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF 101 (710)
Q Consensus 22 ~~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~ 101 (710)
|+.|++++|+|++++.++|++..+++|+|+|||++|+|||||||+|+|..++|++.|.|||||+++++++. ..+|+++
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~--~~~~~~~ 78 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINS--STEYAEF 78 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCC--CCcceEE
Confidence 57899999999999878999989999999999999999999999999999999999999999999999875 4689999
Q ss_pred ecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHH
Q 005171 102 LHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSY 181 (710)
Q Consensus 102 ~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~y 181 (710)
++.+++.+.++++++++|..++++..+.+++||+++|+|+|++|++++++||||||+...+..+|+.++...+++++..|
T Consensus 79 ~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~y 158 (240)
T smart00053 79 LHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQF 158 (240)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988777778888999999999999
Q ss_pred hcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceEEEEcCChhhhh
Q 005171 182 IKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (710)
Q Consensus 182 i~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~ 261 (710)
++++++|||+|++++.++.+++++++++.+++.++|||+|+||+|.+++++++.+++.|+.++|++|||+|+||+|+|++
T Consensus 159 i~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~v~nr~~~d~~ 238 (240)
T smart00053 159 ISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGVVNRSQKDIE 238 (240)
T ss_pred HhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEEEECCChHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred h
Q 005171 262 F 262 (710)
Q Consensus 262 ~ 262 (710)
.
T Consensus 239 ~ 239 (240)
T smart00053 239 G 239 (240)
T ss_pred c
Confidence 4
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=100.00 E-value=7.1e-34 Score=304.27 Aligned_cols=422 Identities=23% Similarity=0.376 Sum_probs=295.9
Q ss_pred CCcchHHHHHHHHHHHHHhCCC--CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEecccCCCcc
Q 005171 21 LGGSVIPLVNKLQDIFAQLGSQ--STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEE 97 (710)
Q Consensus 21 ~~~~l~~~~~kl~d~~~~~g~~--~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~~~~~~~~ 97 (710)
+...||++...+-|+++....+ ..=.||+|||||+|||||+|+|+.+....++|||+| ..||.|+.+.+...+. .
T Consensus 280 lKkSLIDMYSEVLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPy--H 357 (980)
T KOG0447|consen 280 LKKSLIDMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPH--H 357 (980)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcc--h
Confidence 5667899999999988865533 234799999999999999999999999999999998 6899999999886653 1
Q ss_pred ceeeecC----CCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHH
Q 005171 98 YGEFLHL----PGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEAR 173 (710)
Q Consensus 98 ~~~~~~~----~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~ 173 (710)
.+.|... .-.+..|+.++|++++-.+......++.+|+++|.+.+.||+.+.++|||+||++++-+.+-..|..+.
T Consensus 358 VAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~ 437 (980)
T KOG0447|consen 358 VALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKET 437 (980)
T ss_pred hhhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHH
Confidence 1112111 112356888999999988888888889999999999999999999999999999988776666677778
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCcc----ccHHHHHhCCccccc-cc
Q 005171 174 IRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG----TDARNLLLGKVIPLR-LG 248 (710)
Q Consensus 174 i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~----~~~~~~l~~~~~~l~-lG 248 (710)
+-.|...|+.+|++||||+-+...|...+..-.+...+||.|.|||+|+||+|+.++. ....+++.|+.+|++ +|
T Consensus 438 I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALG 517 (980)
T KOG0447|consen 438 IFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALG 517 (980)
T ss_pred HHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcc
Confidence 8899999999999999999999999999998999999999999999999999997653 235789999999997 99
Q ss_pred eEEEEcCChhhhhhcccHHHHHHHHHHhccCCCcccc-c--cccCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 005171 249 YVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNG-L--ADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSV 325 (710)
Q Consensus 249 ~~~V~nrs~~di~~~~s~~~a~~~E~~fF~~~~~~~~-~--~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~ 325 (710)
||+|+.-.. +...|+++.+++|++||.+...++. + +..+.+.+|.=..+.-+...+++++..-........-.+
T Consensus 518 YfaVVTGrG---nssdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaDaFkAtrFNL 594 (980)
T KOG0447|consen 518 YFAVVTGKG---NSSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQADSFKATRFNL 594 (980)
T ss_pred eeEEEecCC---CcchhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999875322 2245889999999999998766532 2 456788888888888888877776655444444444444
Q ss_pred HHHHHH-hCCCCCCh-----h-hhHHHHHHHHHHHHHHHHhhccCCccccccccccccchH-HHHHHHHHHHhhhhcCCC
Q 005171 326 AKEHAS-YGEITESK-----A-GQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARI-HYIFQSIFVKSLEEVDPC 397 (710)
Q Consensus 326 ~~eL~~-lg~~~~~~-----~-~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~~l~ggari-~~~f~~~f~~~l~~~~~~ 397 (710)
+.|-+. ++.-++.. + .+...|-..++ .+ +.-.-.++++-.+.++ .|| ..+|+..+..+...++.-
T Consensus 595 EtEWKNnfpRlRel~RdELfdKAkgEILDEvi~-ls----qv~~k~w~e~l~~~~~--e~vs~~~~~~~~lpaA~~~~sg 667 (980)
T KOG0447|consen 595 ETEWKNNYPRLRELDRNELFEKAKNEILDEVIS-LS----QVTPKHWEEILQQSLW--ERVSTHVIENIYLPAAQTMNSG 667 (980)
T ss_pred hhhhhhcChHhhhcChHHHHHHhhhhHHHHHHh-hh----hcChhhHHHHHHHHHH--HHhhhhhhhhccchhhhccccc
Confidence 444332 11111110 0 11222222221 10 0001111110000000 011 122333333333333333
Q ss_pred CCCchHHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Q 005171 398 EDLTDDDIRTAIQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKIS 456 (710)
Q Consensus 398 ~~l~~~dI~~~i~n~~G~~~~lf~p~~~fe~lvk~~i~~l~~Psl~c~~~V~~eL~~i~ 456 (710)
.-.+.-||+ +.......++.-.-+.+|+.|-..+...+.+|+-+-.+.|++.|...+
T Consensus 668 ~FnttvdIk--lk~w~DKqL~~k~ve~~w~tl~e~f~r~~~~~~~k~hd~ifd~lkeav 724 (980)
T KOG0447|consen 668 TFNTTVDIK--LKQWTDKQLPNKAVEVAWETLQEEFSRFMTEPKGKEHDDIFDKLKEAV 724 (980)
T ss_pred ccceeehhh--hhhhhhhhcchhhhHHHHHHHHHHHHHHhccccccccchHHHHHHHHH
Confidence 334444554 223333334444458999999999999999999888888999888765
No 5
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.88 E-value=4.1e-22 Score=193.92 Aligned_cols=166 Identities=33% Similarity=0.459 Sum_probs=134.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCcc--ceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEE--YGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~--~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
|+|+|.+|||||||||+|+|.+++|++.++||++|+.+.+........ +..........+.++.++++.+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 799999999999999999999999999999999999999876654221 111111124457889999999998888777
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (710)
+....++...+.+....+...+++||||||+.+... ...+++.+|+..++ ++|+|++++.++.+.+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~---------~~~~~~~~~~~~~d-~vi~V~~~~~~~~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNS---------EHTEITEEYLPKAD-VVIFVVDANQDLTESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHT---------TTSHHHHHHHSTTE-EEEEEEETTSTGGGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchh---------hhHHHHHHhhccCC-EEEEEeccCcccchHHHHHH
Confidence 777788888999999999999999999999976422 22378889996665 89999999999999998899
Q ss_pred HHhhCCCCCcEEEeeccc
Q 005171 208 AGIADPDGYRTIGIITKL 225 (710)
Q Consensus 208 a~~~dp~g~rtI~VlTK~ 225 (710)
.+..++...++|+|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 999999999999999995
No 6
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.75 E-value=8.7e-19 Score=153.87 Aligned_cols=61 Identities=31% Similarity=0.483 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcc------cccCCCccchhhhccC
Q 005171 649 QENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVSGTINGIL------LLNKPSPSFMLCESYK 709 (710)
Q Consensus 649 rE~~e~e~Ir~LI~SYF~IVRK~I~D~VPKAIMhfLVN~~k~~l~------~~~~~~~~~~~~~~~~ 709 (710)
+|..|+++|+.|+.|||+||||+|+|+|||||||||||++++.|+ ||..++...||+|||.
T Consensus 1 ~e~~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~~~~~~LL~E~~~ 67 (92)
T smart00302 1 YEDSELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKEELLDELLEEDPE 67 (92)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHcCCHH
Confidence 478899999999999999999999999999999999999999999 9999999999999984
No 7
>PRK09866 hypothetical protein; Provisional
Probab=99.60 E-value=7.3e-13 Score=149.32 Aligned_cols=173 Identities=22% Similarity=0.268 Sum_probs=102.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceee------ec-----CCCc---------
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF------LH-----LPGK--------- 107 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~------~~-----~~g~--------- 107 (710)
|.++|||..|+|||||+|+|+|..++|++...+|.+|+.+.+....+ +..-. .. .|.+
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg~r--e~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl 147 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQK--EPVLHFSHVAPIDCLIQQLQQRLRDCDIKHL 147 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCCcC--ceeeecCCccchHHHHHHhhHHHHHhhhhHH
Confidence 99999999999999999999999999999999999999776543222 11111 00 0000
Q ss_pred -----cccChhHHHHHHHHhh--------------------h--hh---cCCCCcccc-------cceEEEEecCC----
Q 005171 108 -----RFYDFSEIRREIQAQT--------------------D--KE---AGGNKGVSD-------KQIRLKIFSPH---- 146 (710)
Q Consensus 108 -----~~~d~~~i~~~i~~~t--------------------~--~~---~g~~~~~s~-------~~i~l~i~~p~---- 146 (710)
...|...+...+.... + +. .+..-.|.. .+|.++..-..
T Consensus 148 ~e~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~l~ 227 (741)
T PRK09866 148 TDVLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLES 227 (741)
T ss_pred HHHHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHHHHhhhhcCceeeeeeeecccccc
Confidence 0011112221111110 0 00 011111110 12333332222
Q ss_pred -ccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCC--cEEEeec
Q 005171 147 -VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGY--RTIGIIT 223 (710)
Q Consensus 147 -~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~--rtI~VlT 223 (710)
..+++||||||+.+... ..+.....+.+..+| +||+|++++......+ ..+++.+...++ ++|+|+|
T Consensus 228 ~~~QIIFVDTPGIhk~~~--------~~L~k~M~eqL~eAD-vVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVN 297 (741)
T PRK09866 228 YPGQLTLLDTPGPNEAGQ--------PHLQKMLNQQLARAS-AVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVN 297 (741)
T ss_pred ccCCEEEEECCCCCCccc--------hHHHHHHHHHHhhCC-EEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEE
Confidence 25899999999986421 123334445788887 8888888876555555 455666655553 9999999
Q ss_pred cccccCccc
Q 005171 224 KLDIMDRGT 232 (710)
Q Consensus 224 K~Dl~~~~~ 232 (710)
|+|+.+...
T Consensus 298 KIDl~dree 306 (741)
T PRK09866 298 KFDQQDRNS 306 (741)
T ss_pred cccCCCccc
Confidence 999986443
No 8
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=4.7e-14 Score=138.70 Aligned_cols=127 Identities=25% Similarity=0.390 Sum_probs=93.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCcc--ccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC--TRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~--Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (710)
-++|.|+++|.+|+|||||||+|+|+.-|.|-+..+ |+.+-. |
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNf--------------f--------------------- 66 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINF--------------F--------------------- 66 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEE--------------E---------------------
Confidence 378999999999999999999999987554443321 211110 0
Q ss_pred hhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeE--EEEEecCCCccc
Q 005171 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCL--ILAVTPANSDLA 200 (710)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~i--IL~V~~a~~d~~ 200 (710)
.. ...+.|||+||+....+ +....+.+..++.+|++...++ ++.++|+.+.+.
T Consensus 67 ---------------------~~-~~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~ 121 (200)
T COG0218 67 ---------------------EV-DDELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK 121 (200)
T ss_pred ---------------------Ee-cCcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc
Confidence 00 01388999999975532 3567789999999999964334 344678888887
Q ss_pred chHHHHHHHhhCCCCCcEEEeeccccccCccc
Q 005171 201 NSDALQIAGIADPDGYRTIGIITKLDIMDRGT 232 (710)
Q Consensus 201 ~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~ 232 (710)
..| .++...+...+.++++|+||+|.+..+.
T Consensus 122 ~~D-~em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 122 DLD-REMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred HHH-HHHHHHHHHcCCCeEEEEEccccCChhH
Confidence 766 5788888888999999999999998654
No 9
>COG1159 Era GTPase [General function prediction only]
Probab=99.58 E-value=5.1e-14 Score=145.65 Aligned_cols=125 Identities=28% Similarity=0.321 Sum_probs=92.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
.|++||.+|+|||||+|+|+|..+.-++.- | +|++....+.+.+
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k-----~------QTTR~~I~GI~t~------------------------- 51 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPK-----P------QTTRNRIRGIVTT------------------------- 51 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCC-----c------chhhhheeEEEEc-------------------------
Confidence 489999999999999999999998544443 3 3333222222211
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIA 208 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la 208 (710)
+..+++||||||+.... ..+.+.+.+.+.+.+...| +||+|+++...+...| ..++
T Consensus 52 -----------------~~~QiIfvDTPGih~pk-----~~l~~~m~~~a~~sl~dvD-lilfvvd~~~~~~~~d-~~il 107 (298)
T COG1159 52 -----------------DNAQIIFVDTPGIHKPK-----HALGELMNKAARSALKDVD-LILFVVDADEGWGPGD-EFIL 107 (298)
T ss_pred -----------------CCceEEEEeCCCCCCcc-----hHHHHHHHHHHHHHhccCc-EEEEEEeccccCCccH-HHHH
Confidence 12479999999998762 4567788888889999998 8899999988777655 3455
Q ss_pred HhhCCCCCcEEEeeccccccCcccc
Q 005171 209 GIADPDGYRTIGIITKLDIMDRGTD 233 (710)
Q Consensus 209 ~~~dp~g~rtI~VlTK~Dl~~~~~~ 233 (710)
..+.....|.|+++||+|...+...
T Consensus 108 ~~lk~~~~pvil~iNKID~~~~~~~ 132 (298)
T COG1159 108 EQLKKTKTPVILVVNKIDKVKPKTV 132 (298)
T ss_pred HHHhhcCCCeEEEEEccccCCcHHH
Confidence 5555556799999999999987653
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.56 E-value=4e-14 Score=153.92 Aligned_cols=124 Identities=26% Similarity=0.395 Sum_probs=99.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
|.|++||.+|+|||||+|+|+|+.. .++-.+.+++++..|+.....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-----------AIV~D~pGvTRDr~y~~~~~~~---------------------- 50 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-----------AIVSDTPGVTRDRIYGDAEWLG---------------------- 50 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-----------eEeecCCCCccCCccceeEEcC----------------------
Confidence 8999999999999999999999874 4444455666666665432221
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (710)
..+.||||+|+.... ++.+.+++++.+...+..+| +||+|+++...++..| ..+
T Consensus 51 --------------------~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eAD-vilfvVD~~~Git~~D-~~i 104 (444)
T COG1160 51 --------------------REFILIDTGGLDDGD----EDELQELIREQALIAIEEAD-VILFVVDGREGITPAD-EEI 104 (444)
T ss_pred --------------------ceEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCC-EEEEEEeCCCCCCHHH-HHH
Confidence 248999999998652 24688899999999999998 7888889998888877 678
Q ss_pred HHhhCCCCCcEEEeeccccccCc
Q 005171 208 AGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 208 a~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++.+.+.++++|+|+||+|....
T Consensus 105 a~~Lr~~~kpviLvvNK~D~~~~ 127 (444)
T COG1160 105 AKILRRSKKPVILVVNKIDNLKA 127 (444)
T ss_pred HHHHHhcCCCEEEEEEcccCchh
Confidence 88888778999999999998743
No 11
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=99.55 E-value=6.9e-14 Score=161.03 Aligned_cols=377 Identities=28% Similarity=0.370 Sum_probs=309.4
Q ss_pred cceeeecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHH
Q 005171 97 EYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRT 176 (710)
Q Consensus 97 ~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~ 176 (710)
+|..+.+.+...+.++..+..+....+....+.+.++...++.+.+..+....++.+|.||+...+...++.++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (546)
T COG0699 2 EEFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDEL 81 (546)
T ss_pred CcchhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHH
Confidence 35556666667788899999999999999889999999999999999999999999999999999999999998877778
Q ss_pred HHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceEEEEcCC
Q 005171 177 MIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRS 256 (710)
Q Consensus 177 lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs 256 (710)
+-..++...+++|.....++.+..+......++..++ +.++.+.++.+...... +..|++.+.+..
T Consensus 82 ~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 147 (546)
T COG0699 82 LDLGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDAL 147 (546)
T ss_pred HHhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCch
Confidence 8889999999999999999999988888888887766 78888888776543211 677888888999
Q ss_pred hhhhhhcccHHHHHHHHHHhccCCCccccccccCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCCCC
Q 005171 257 QEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEIT 336 (710)
Q Consensus 257 ~~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~ 336 (710)
+.++....+...+...+..+|..++.|......++..++...+++.+..|++...+...-.......+ .+++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~- 220 (546)
T COG0699 148 ETDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN- 220 (546)
T ss_pred hHHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch-
Confidence 99998888888888999999999999999888899999999999999999999888765544433332 22221
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhhccCCccccccccccccchHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHhhcCCC
Q 005171 337 ESKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPK 416 (710)
Q Consensus 337 ~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~f~~~l~~~~~~~~l~~~dI~~~i~n~~G~~ 416 (710)
.++.....|...+. ++.+|+|++.. ...+.++..+.+.++.....++.|.+
T Consensus 221 --------~~~~~~~~~~~~~~-------------~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~ 271 (546)
T COG0699 221 --------EVLAVIQTLLKRLS-------------ELVRGARIRLN--------IILFSDLEEVSDSPVLLKELASKGER 271 (546)
T ss_pred --------HHHHHHHHHHHHHH-------------HHhccchhhhh--------hcccchHHHhhhhhhHHHHHcccCCC
Confidence 34555566666665 23445566544 22334555566677888888889998
Q ss_pred CCCCCCChhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhh-hhccCCchHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005171 417 SALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCL-VNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGH 495 (710)
Q Consensus 417 ~~lf~p~~~fe~lvk~~i~~l~~Psl~c~~~V~~eL~~i~~~~~-~~~l~rfp~L~~~i~~vv~~~l~e~~~~a~~~v~~ 495 (710)
+..|.....|..++..++..+..+..+|+..+.+++.+++.... ......||.+...+...+.++..+.....+..+..
T Consensus 272 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (546)
T COG0699 272 PSLLSGLTLLDTLVETPIGQFDTQINQLLRKLISELVRILLKELESASSSPFPKLSEALEEVVNQLKNKVDSGLESGLLA 351 (546)
T ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 88899999999999999999999998999999999999855544 35578999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCCCCchHHHHHHHH
Q 005171 496 IIEMEMDYINTSHPNFIGGSKAVEIALQ 523 (710)
Q Consensus 496 li~~E~~yInT~hpdF~~~~~~~~~~~~ 523 (710)
.++++..|++|.||.|.....++.....
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 379 (546)
T COG0699 352 IIDIEERYINTKHPLFLSLRQAAAILSK 379 (546)
T ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHH
Confidence 9999999999999999998877776644
No 12
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.52 E-value=1.2e-12 Score=142.85 Aligned_cols=151 Identities=26% Similarity=0.349 Sum_probs=101.9
Q ss_pred CCcchHHHHHHHHHHHHHhCCCCCC-CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccce
Q 005171 21 LGGSVIPLVNKLQDIFAQLGSQSTI-ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYG 99 (710)
Q Consensus 21 ~~~~l~~~~~kl~d~~~~~g~~~~~-~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~ 99 (710)
+..++-.+.+.|.++++....+..+ +--.||++|.+|+|||||||+|+|++. .++..+.+|+++-...
T Consensus 190 i~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~-----------AIVTdI~GTTRDviee 258 (454)
T COG0486 190 IREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDR-----------AIVTDIAGTTRDVIEE 258 (454)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCc-----------eEecCCCCCccceEEE
Confidence 4455666666666666654443333 445799999999999999999999984 4444444666532221
Q ss_pred eeecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHH
Q 005171 100 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIM 179 (710)
Q Consensus 100 ~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~ 179 (710)
.++..| ..+.|+||.|+..+. ..++..=-+-.+
T Consensus 259 -~i~i~G-----------------------------------------~pv~l~DTAGiRet~-----d~VE~iGIeRs~ 291 (454)
T COG0486 259 -DINLNG-----------------------------------------IPVRLVDTAGIRETD-----DVVERIGIERAK 291 (454)
T ss_pred -EEEECC-----------------------------------------EEEEEEecCCcccCc-----cHHHHHHHHHHH
Confidence 222222 469999999998552 233333334456
Q ss_pred HHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCccc
Q 005171 180 SYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 232 (710)
Q Consensus 180 ~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~ 232 (710)
+.++++| +||+|++++..+...+ ..+.. .-+.++++++|+||.|+..+..
T Consensus 292 ~~i~~AD-lvL~v~D~~~~~~~~d-~~~~~-~~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 292 KAIEEAD-LVLFVLDASQPLDKED-LALIE-LLPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred HHHHhCC-EEEEEEeCCCCCchhh-HHHHH-hcccCCCEEEEEechhcccccc
Confidence 7788898 8999999988766655 33444 5566899999999999997643
No 13
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.51 E-value=1.1e-14 Score=128.08 Aligned_cols=61 Identities=38% Similarity=0.598 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcc------cccCCCccchhhhccC
Q 005171 649 QENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVSGTINGIL------LLNKPSPSFMLCESYK 709 (710)
Q Consensus 649 rE~~e~e~Ir~LI~SYF~IVRK~I~D~VPKAIMhfLVN~~k~~l~------~~~~~~~~~~~~~~~~ 709 (710)
||+.+++.|+.++.|||+||+|++.|+|||||||||||.+++.|+ ||..+++..||.|+|.
T Consensus 1 ~e~~~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~~~~~Ll~Ed~~ 67 (92)
T PF02212_consen 1 REQREVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEEDLEELLQEDPE 67 (92)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGCCCCT--GHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchHHHHHHHCCCHH
Confidence 689999999999999999999999999999999999999999999 8999999999999874
No 14
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.49 E-value=1e-12 Score=138.52 Aligned_cols=120 Identities=20% Similarity=0.167 Sum_probs=78.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.|+|||.+|||||||+|+|+|..+..++.- .+||.++.. ..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~------------i~-------------------------- 43 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISG------------IH-------------------------- 43 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEE------------EE--------------------------
Confidence 589999999999999999999976433332 234332111 00
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (710)
......+.||||||+.... ..+.+.+...+..++..+| ++++|++++...... ..+
T Consensus 44 ----------------~~~~~qii~vDTPG~~~~~-----~~l~~~~~~~~~~~l~~aD-vvl~VvD~~~~~~~~--~~i 99 (270)
T TIGR00436 44 ----------------TTGASQIIFIDTPGFHEKK-----HSLNRLMMKEARSAIGGVD-LILFVVDSDQWNGDG--EFV 99 (270)
T ss_pred ----------------EcCCcEEEEEECcCCCCCc-----chHHHHHHHHHHHHHhhCC-EEEEEEECCCCCchH--HHH
Confidence 0011258999999997541 2334455556778889998 566666766543322 234
Q ss_pred HHhhCCCCCcEEEeeccccccCc
Q 005171 208 AGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 208 a~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
...+...+.++++|+||+|+.++
T Consensus 100 ~~~l~~~~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 100 LTKLQNLKRPVVLTRNKLDNKFK 122 (270)
T ss_pred HHHHHhcCCCEEEEEECeeCCCH
Confidence 44444457899999999999753
No 15
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.45 E-value=3.6e-13 Score=146.56 Aligned_cols=157 Identities=20% Similarity=0.337 Sum_probs=105.6
Q ss_pred CcCCCCcchHHHHHHHHHHHHHhCCC-CC---CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEeccc
Q 005171 17 SAVPLGGSVIPLVNKLQDIFAQLGSQ-ST---IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQT 92 (710)
Q Consensus 17 ~~~~~~~~l~~~~~kl~d~~~~~g~~-~~---~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~ 92 (710)
-+++=+..+-+|++.+...+. .... .. .+.-+|+|||.+|+|||||+|+|+|.+- .++..+.++
T Consensus 145 ISA~Hg~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR-----------~Iv~~~aGT 212 (444)
T COG1160 145 ISAEHGRGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEER-----------VIVSDIAGT 212 (444)
T ss_pred eehhhccCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhccCce-----------EEecCCCCc
Confidence 344456667777777776542 1211 11 2467999999999999999999999973 333333344
Q ss_pred CCCccceeeecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHH
Q 005171 93 KTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEA 172 (710)
Q Consensus 93 ~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~ 172 (710)
+++.....+.+. ...++||||.|+-+...-.. .++.
T Consensus 213 TRD~I~~~~e~~------------------------------------------~~~~~liDTAGiRrk~ki~e--~~E~ 248 (444)
T COG1160 213 TRDSIDIEFERD------------------------------------------GRKYVLIDTAGIRRKGKITE--SVEK 248 (444)
T ss_pred cccceeeeEEEC------------------------------------------CeEEEEEECCCCCccccccc--ceEE
Confidence 443333333211 13589999999976542211 1111
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 173 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
.--.-+...|..++ ++++|++|...+..+| .+++..+...|+.+++|+||||++++.
T Consensus 249 ~Sv~rt~~aI~~a~-vvllviDa~~~~~~qD-~~ia~~i~~~g~~~vIvvNKWDl~~~~ 305 (444)
T COG1160 249 YSVARTLKAIERAD-VVLLVIDATEGISEQD-LRIAGLIEEAGRGIVIVVNKWDLVEED 305 (444)
T ss_pred EeehhhHhHHhhcC-EEEEEEECCCCchHHH-HHHHHHHHHcCCCeEEEEEccccCCch
Confidence 11111346677887 8888999999999999 788998888999999999999999863
No 16
>PRK00089 era GTPase Era; Reviewed
Probab=99.44 E-value=4e-12 Score=135.39 Aligned_cols=121 Identities=28% Similarity=0.363 Sum_probs=79.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccc-cceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT-RRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~T-r~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.|+|+|.+|||||||+|+|+|..+..++..+.| |..+. +
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~------------~---------------------------- 46 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIR------------G---------------------------- 46 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEE------------E----------------------------
Confidence 499999999999999999999986544433322 21110 0
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (710)
+......+++||||||+.... ..+.+.+...+..++..+| +|++|+++...+...+ ..+
T Consensus 47 --------------i~~~~~~qi~~iDTPG~~~~~-----~~l~~~~~~~~~~~~~~~D-~il~vvd~~~~~~~~~-~~i 105 (292)
T PRK00089 47 --------------IVTEDDAQIIFVDTPGIHKPK-----RALNRAMNKAAWSSLKDVD-LVLFVVDADEKIGPGD-EFI 105 (292)
T ss_pred --------------EEEcCCceEEEEECCCCCCch-----hHHHHHHHHHHHHHHhcCC-EEEEEEeCCCCCChhH-HHH
Confidence 000011369999999997542 2344555666777888898 5556666665444433 445
Q ss_pred HHhhCCCCCcEEEeeccccccCc
Q 005171 208 AGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 208 a~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++.+...+.++++|+||+|+...
T Consensus 106 ~~~l~~~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 106 LEKLKKVKTPVILVLNKIDLVKD 128 (292)
T ss_pred HHHHhhcCCCEEEEEECCcCCCC
Confidence 55555556899999999999843
No 17
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.43 E-value=2.4e-12 Score=140.36 Aligned_cols=126 Identities=23% Similarity=0.386 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
-..|+|++||.+|+|||||+|+|+|.++...+.-.+|+-|+.-.
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~------------------------------------ 230 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRR------------------------------------ 230 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEE------------------------------------
Confidence 36799999999999999999999998754333333444442211
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH-
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD- 203 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~- 203 (710)
+. -|+...+.||||||+.+. -|.++.+.++.. ..++.++| +||+|+++.......+
T Consensus 231 ---------------i~--~~~~~~i~l~DT~G~~~~----l~~~lie~f~~t-le~~~~AD-lil~VvD~s~~~~~~~~ 287 (351)
T TIGR03156 231 ---------------LD--LPDGGEVLLTDTVGFIRD----LPHELVAAFRAT-LEEVREAD-LLLHVVDASDPDREEQI 287 (351)
T ss_pred ---------------EE--eCCCceEEEEecCccccc----CCHHHHHHHHHH-HHHHHhCC-EEEEEEECCCCchHHHH
Confidence 11 112236899999998542 134554556554 45788888 6666777664433222
Q ss_pred --HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 --ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 --~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
...+.+.+...+.++|+|+||+|+.+
T Consensus 288 ~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 288 EAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred HHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 13456666555689999999999975
No 18
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=1.1e-12 Score=133.90 Aligned_cols=185 Identities=19% Similarity=0.226 Sum_probs=116.6
Q ss_pred CCCEE-EEEcCCCCcHHHHHHHHhCCCCCccC-CCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhh
Q 005171 46 ELPQV-AVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (710)
Q Consensus 46 ~lPqI-vVVG~qssGKSSLLnaL~G~~~lP~~-~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (710)
.-|-. .++|.+|+|||||+|||++...-|++ .+.||+-++..... .
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~----------~---------------------- 84 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLS----------Y---------------------- 84 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhh----------c----------------------
Confidence 34544 49999999999999999977666665 35555443221110 0
Q ss_pred hhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 005171 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (710)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~ 203 (710)
+..+|+||||||+.+.... +..++..+.+|+.+.+ ++|++.++....-..+
T Consensus 85 ----------------------~~~~l~lwDtPG~gdg~~~------D~~~r~~~~d~l~~~D-LvL~l~~~~draL~~d 135 (296)
T COG3596 85 ----------------------DGENLVLWDTPGLGDGKDK------DAEHRQLYRDYLPKLD-LVLWLIKADDRALGTD 135 (296)
T ss_pred ----------------------cccceEEecCCCcccchhh------hHHHHHHHHHHhhhcc-EEEEeccCCCccccCC
Confidence 0136999999999876433 3578899999999998 8999998875544434
Q ss_pred HHHHHHhhCCC--CCcEEEeeccccccCccccHHHHHhCCccccccceEEEEcCChhhhhhcccHHHHHHHHHHhcc-CC
Q 005171 204 ALQIAGIADPD--GYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFR-SR 280 (710)
Q Consensus 204 ~l~la~~~dp~--g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~~~~s~~~a~~~E~~fF~-~~ 280 (710)
..+++.+--. ++|+|+|+|.+|...++.++. . ..+.....+.. -+++....=.+||. .+
T Consensus 136 -~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~-~--------------~~~~p~~a~~q--fi~~k~~~~~~~~q~V~ 197 (296)
T COG3596 136 -EDFLRDVIILGLDKRVLFVVTQADRAEPGREWD-S--------------AGHQPSPAIKQ--FIEEKAEALGRLFQEVK 197 (296)
T ss_pred -HHHHHHHHHhccCceeEEEEehhhhhccccccc-c--------------ccCCCCHHHHH--HHHHHHHHHHHHHhhcC
Confidence 3555554322 389999999999998874331 0 01111111111 12222222233443 46
Q ss_pred Cccccc-cccCCchhHHHHHHHHHHHHHHh
Q 005171 281 PVYNGL-ADRCGVPQLAKKLNQILVQHIKA 309 (710)
Q Consensus 281 ~~~~~~-~~~~Gi~~L~~~L~~~L~~~i~~ 309 (710)
|.|... ...+|++.|..+|-+.+-.+-+.
T Consensus 198 pV~~~~~r~~wgl~~l~~ali~~lp~e~rs 227 (296)
T COG3596 198 PVVAVSGRLPWGLKELVRALITALPVEARS 227 (296)
T ss_pred CeEEeccccCccHHHHHHHHHHhCcccccc
Confidence 777554 55699998888887776655443
No 19
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.40 E-value=1.1e-12 Score=126.12 Aligned_cols=117 Identities=29% Similarity=0.430 Sum_probs=73.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|++||.+|+|||||+|+|+|... .++. +.+++.....+.+.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~v~n-----------~pG~Tv~~~~g~~~-------------------------- 43 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-KVGN-----------WPGTTVEKKEGIFK-------------------------- 43 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-EEEE-----------STTSSSEEEEEEEE--------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-eecC-----------CCCCCeeeeeEEEE--------------------------
Confidence 699999999999999999999973 2221 22222211111111
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCCeEEEEEecCCCcccchHHHH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~~~l~ 206 (710)
+. ...+.||||||+.+..... .+ +.++.+|+. +++ +|++|++|.+ + ...+.
T Consensus 44 -------------~~---~~~~~lvDlPG~ysl~~~s----~e---e~v~~~~l~~~~~D-~ii~VvDa~~-l--~r~l~ 96 (156)
T PF02421_consen 44 -------------LG---DQQVELVDLPGIYSLSSKS----EE---ERVARDYLLSEKPD-LIIVVVDATN-L--ERNLY 96 (156)
T ss_dssp -------------ET---TEEEEEEE----SSSSSSS----HH---HHHHHHHHHHTSSS-EEEEEEEGGG-H--HHHHH
T ss_pred -------------ec---CceEEEEECCCcccCCCCC----cH---HHHHHHHHhhcCCC-EEEEECCCCC-H--HHHHH
Confidence 10 1368999999987653221 12 244556663 555 7788888775 2 23367
Q ss_pred HHHhhCCCCCcEEEeeccccccCc
Q 005171 207 IAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 207 la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+..++...|.|+++|+||+|...+
T Consensus 97 l~~ql~e~g~P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 97 LTLQLLELGIPVVVVLNKMDEAER 120 (156)
T ss_dssp HHHHHHHTTSSEEEEEETHHHHHH
T ss_pred HHHHHHHcCCCEEEEEeCHHHHHH
Confidence 778887889999999999999864
No 20
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.40 E-value=5.1e-12 Score=131.92 Aligned_cols=143 Identities=22% Similarity=0.304 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCcc
Q 005171 29 VNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108 (710)
Q Consensus 29 ~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~ 108 (710)
++++++.++.|-. .+.++|+|+|.|.+|+|||||+++|++.+. -+-.|..|+..-.-|.|
T Consensus 151 L~~~r~~l~~LP~-Idp~~pTivVaG~PNVGKSSlv~~lT~Akp------------EvA~YPFTTK~i~vGhf------- 210 (346)
T COG1084 151 LRKARDHLKKLPA-IDPDLPTIVVAGYPNVGKSSLVRKLTTAKP------------EVAPYPFTTKGIHVGHF------- 210 (346)
T ss_pred HHHHHHHHhcCCC-CCCCCCeEEEecCCCCcHHHHHHHHhcCCC------------ccCCCCccccceeEeee-------
Confidence 3344444444431 356899999999999999999999999862 11111222221111222
Q ss_pred ccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeE
Q 005171 109 FYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCL 188 (710)
Q Consensus 109 ~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~i 188 (710)
.-....+++|||||+-+-|..+ ...++....-.|++-.++
T Consensus 211 -----------------------------------e~~~~R~QvIDTPGlLDRPl~E-----rN~IE~qAi~AL~hl~~~ 250 (346)
T COG1084 211 -----------------------------------ERGYLRIQVIDTPGLLDRPLEE-----RNEIERQAILALRHLAGV 250 (346)
T ss_pred -----------------------------------ecCCceEEEecCCcccCCChHH-----hcHHHHHHHHHHHHhcCe
Confidence 1122468999999998776443 223444444455555578
Q ss_pred EEEEecCCCc--ccchHHHHHHHhhCCC-CCcEEEeeccccccCcc
Q 005171 189 ILAVTPANSD--LANSDALQIAGIADPD-GYRTIGIITKLDIMDRG 231 (710)
Q Consensus 189 IL~V~~a~~d--~~~~~~l~la~~~dp~-g~rtI~VlTK~Dl~~~~ 231 (710)
||++++.... +.-.+-..|..++.+. ..+++.|+||+|..+.+
T Consensus 251 IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 251 ILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred EEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 8888877632 3333335677777665 35899999999998653
No 21
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.37 E-value=7.7e-12 Score=114.34 Aligned_cols=115 Identities=27% Similarity=0.364 Sum_probs=73.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
+|+|+|.+|+|||||+|+|+|......+.. .+|+.+..-. +. .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~------------~~-~----------------------- 44 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQ------------FE-Y----------------------- 44 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEE------------EE-E-----------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeee------------ee-e-----------------------
Confidence 699999999999999999999765455443 4555542110 00 0
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (710)
....+.|+||||+..... .+........+.+.+...+ +|++|++++... +.....+
T Consensus 45 ------------------~~~~~~~vDtpG~~~~~~----~~~~~~~~~~~~~~~~~~d-~ii~vv~~~~~~-~~~~~~~ 100 (116)
T PF01926_consen 45 ------------------NNKKFILVDTPGINDGES----QDNDGKEIRKFLEQISKSD-LIIYVVDASNPI-TEDDKNI 100 (116)
T ss_dssp ------------------TTEEEEEEESSSCSSSSH----HHHHHHHHHHHHHHHCTES-EEEEEEETTSHS-HHHHHHH
T ss_pred ------------------ceeeEEEEeCCCCcccch----hhHHHHHHHHHHHHHHHCC-EEEEEEECCCCC-CHHHHHH
Confidence 113578999999976421 1111112333555567777 566666666633 3333567
Q ss_pred HHhhCCCCCcEEEeecc
Q 005171 208 AGIADPDGYRTIGIITK 224 (710)
Q Consensus 208 a~~~dp~g~rtI~VlTK 224 (710)
++++. .+.++++|+||
T Consensus 101 ~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 101 LRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHH-TTSEEEEEEES
T ss_pred HHHHh-cCCCEEEEEcC
Confidence 77776 78999999998
No 22
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.36 E-value=3.3e-11 Score=119.99 Aligned_cols=142 Identities=21% Similarity=0.312 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhCCC--CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc--cccceEEEEecccCCCccceeeecC
Q 005171 29 VNKLQDIFAQLGSQ--STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHL 104 (710)
Q Consensus 29 ~~kl~d~~~~~g~~--~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~--~Tr~p~~~~l~~~~~~~~~~~~~~~ 104 (710)
+.++++.-+..-.+ ..-.+|.|+|||.+|+|||||+|+|++.++.+..+.. ||+.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~------------------ 65 (196)
T PRK00454 4 IHNAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINF------------------ 65 (196)
T ss_pred hhHHHHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEE------------------
Confidence 34455443332222 2337899999999999999999999998653332211 2211100
Q ss_pred CCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcC
Q 005171 105 PGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQ 184 (710)
Q Consensus 105 ~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~ 184 (710)
..+ ..++.||||||+.... .+....+.+..++..|+..
T Consensus 66 -----------------------------------~~~----~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~ 103 (196)
T PRK00454 66 -----------------------------------FEV----NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRT 103 (196)
T ss_pred -----------------------------------Eec----CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHh
Confidence 000 1369999999976432 2233445677788888886
Q ss_pred CCe--EEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 185 PSC--LILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 185 ~~~--iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
.+. ++++|+++.......+ ..+.+.+...+.++++|+||+|+.+.+
T Consensus 104 ~~~~~~~~~v~d~~~~~~~~~-~~i~~~l~~~~~~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 104 RENLKGVVLLIDSRHPLKELD-LQMIEWLKEYGIPVLIVLTKADKLKKG 151 (196)
T ss_pred CccceEEEEEEecCCCCCHHH-HHHHHHHHHcCCcEEEEEECcccCCHH
Confidence 542 4555566555443333 234444455578899999999998653
No 23
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.36 E-value=1e-11 Score=124.42 Aligned_cols=132 Identities=18% Similarity=0.258 Sum_probs=81.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC--ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g--~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
+|++||.+|+|||||+|+|+|...+.++.. .+|+.+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~-------------------------------------- 43 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKES-------------------------------------- 43 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceee--------------------------------------
Confidence 699999999999999999999987655532 2343321000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH--
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (710)
.++ ....++||||||+.+... ...++...+...+.......+ +||+|+++.. +...+.
T Consensus 44 -------------~~~---~~~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~~~~~g~~-~illVi~~~~-~t~~d~~~ 103 (196)
T cd01852 44 -------------AVW---DGRRVNVIDTPGLFDTSV--SPEQLSKEIVRCLSLSAPGPH-AFLLVVPLGR-FTEEEEQA 103 (196)
T ss_pred -------------EEE---CCeEEEEEECcCCCCccC--ChHHHHHHHHHHHHhcCCCCE-EEEEEEECCC-cCHHHHHH
Confidence 001 113589999999987642 223444444444444455666 6777777776 554442
Q ss_pred HHHHHhhCCC--CCcEEEeeccccccCccccHHHHHh
Q 005171 205 LQIAGIADPD--GYRTIGIITKLDIMDRGTDARNLLL 239 (710)
Q Consensus 205 l~la~~~dp~--g~rtI~VlTK~Dl~~~~~~~~~~l~ 239 (710)
++.++++-+. ..++|+|+|++|.+..+ ...+++.
T Consensus 104 l~~l~~~fg~~~~~~~ivv~T~~d~l~~~-~~~~~~~ 139 (196)
T cd01852 104 VETLQELFGEKVLDHTIVLFTRGDDLEGG-TLEDYLE 139 (196)
T ss_pred HHHHHHHhChHhHhcEEEEEECccccCCC-cHHHHHH
Confidence 3333333221 36899999999998654 4444443
No 24
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.5e-10 Score=130.19 Aligned_cols=166 Identities=22% Similarity=0.298 Sum_probs=114.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCC-ccccChhHHHHHHHHhhhhh
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPG-KRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g-~~~~d~~~i~~~i~~~t~~~ 126 (710)
-.|++.|+.|+||||++||++..++||.|.|+||.|-.++. ++... .+++-.+| ..-.|...+...+.+.....
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Ve--gadG~---e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVE--GADGA---EAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeec--ccCCc---ceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 35999999999999999999999999999999999987664 32211 12222333 11223333332222211110
Q ss_pred cCCCCcccccceEEEEecCCc------cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc
Q 005171 127 AGGNKGVSDKQIRLKIFSPHV------LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA 200 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~------~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~ 200 (710)
. -...--++|+.|+. -++.|+|.||++-.+ .....+.++..++| +.++|+.|.+.++
T Consensus 185 -----~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s----------e~tswid~~cldaD-VfVlV~NaEntlt 247 (749)
T KOG0448|consen 185 -----D-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS----------ELTSWIDSFCLDAD-VFVLVVNAENTLT 247 (749)
T ss_pred -----c-cCcceEEEEEecCccchhhhccceeccCCCCCCch----------hhhHHHHHHhhcCC-eEEEEecCccHhH
Confidence 0 12233577777775 389999999997543 55677888899998 7888888888888
Q ss_pred chHHHHHHHhhCCCCCcEEEeeccccccCccccHHH
Q 005171 201 NSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARN 236 (710)
Q Consensus 201 ~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~ 236 (710)
.++ .++...+......++++.||||......++.+
T Consensus 248 ~se-k~Ff~~vs~~KpniFIlnnkwDasase~ec~e 282 (749)
T KOG0448|consen 248 LSE-KQFFHKVSEEKPNIFILNNKWDASASEPECKE 282 (749)
T ss_pred HHH-HHHHHHhhccCCcEEEEechhhhhcccHHHHH
Confidence 777 67888887766667777799999987776643
No 25
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.35 E-value=2.4e-11 Score=115.93 Aligned_cols=122 Identities=29% Similarity=0.387 Sum_probs=76.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCcc-ccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC-TRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~-Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
-.+|+++|.+|||||||+|+|+|.++.+...... |+.... .
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~------------~-------------------------- 44 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR------------G-------------------------- 44 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE------------E--------------------------
Confidence 3579999999999999999999987533332211 111000 0
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
+.......+.+|||||+..... .....+......++...+ ++++|+++.......+ .
T Consensus 45 ----------------~~~~~~~~~~liDtpG~~~~~~-----~~~~~~~~~~~~~~~~~d-~i~~v~d~~~~~~~~~-~ 101 (168)
T cd04163 45 ----------------IYTDDDAQIIFVDTPGIHKPKK-----KLGERMVKAAWSALKDVD-LVLFVVDASEPIGEGD-E 101 (168)
T ss_pred ----------------EEEcCCeEEEEEECCCCCcchH-----HHHHHHHHHHHHHHHhCC-EEEEEEECCCccCchH-H
Confidence 0000123689999999875421 112235556677888888 4555555555433333 3
Q ss_pred HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.+.+.+...+.+.++|+||+|+..
T Consensus 102 ~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 102 FILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred HHHHHHHHhCCCEEEEEEchhccc
Confidence 455555555689999999999984
No 26
>PRK11058 GTPase HflX; Provisional
Probab=99.34 E-value=2.3e-11 Score=135.71 Aligned_cols=126 Identities=21% Similarity=0.368 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
..+|.|++||.+|||||||+|+|+|.++...+.-.+|+-|+.-
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~------------------------------------- 237 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLR------------------------------------- 237 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceE-------------------------------------
Confidence 3679999999999999999999999876422222233333211
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH-
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD- 203 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~- 203 (710)
.+.+ +....+.|+||||+.+. .|.++.+.+... ..++..++ ++|+|+++........
T Consensus 238 --------------~i~l--~~~~~~~l~DTaG~~r~----lp~~lve~f~~t-l~~~~~AD-lIL~VvDaS~~~~~e~l 295 (426)
T PRK11058 238 --------------RIDV--ADVGETVLADTVGFIRH----LPHDLVAAFKAT-LQETRQAT-LLLHVVDAADVRVQENI 295 (426)
T ss_pred --------------EEEe--CCCCeEEEEecCccccc----CCHHHHHHHHHH-HHHhhcCC-EEEEEEeCCCccHHHHH
Confidence 1111 11124789999998542 244555556554 56778888 6666667665432222
Q ss_pred --HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 --ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 --~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
...++.++...+.++|+|+||+|+.+
T Consensus 296 ~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 296 EAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred HHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 13456666656789999999999974
No 27
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.34 E-value=1.2e-11 Score=121.98 Aligned_cols=125 Identities=23% Similarity=0.321 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCC--ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g--~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (710)
-..|.|+|+|..|+|||||+|+|+|..+.+.-+. .+|+.+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~------------------------------------- 58 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLIN------------------------------------- 58 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEE-------------------------------------
Confidence 5678999999999999999999999864332111 1121110
Q ss_pred hhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCC--eEEEEEecCCCccc
Q 005171 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPS--CLILAVTPANSDLA 200 (710)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~--~iIL~V~~a~~d~~ 200 (710)
...+ + .++.||||||+..... +......+..++..|++..+ +.+++|++++..+.
T Consensus 59 ----------------~~~~--~--~~~~liDtpG~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~ 115 (179)
T TIGR03598 59 ----------------FFEV--N--DGFRLVDLPGYGYAKV---SKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLK 115 (179)
T ss_pred ----------------EEEe--C--CcEEEEeCCCCccccC---ChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCC
Confidence 0000 0 2589999999865422 22334566777778887542 35666777777666
Q ss_pred chHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 201 NSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 201 ~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
..+ ..+.+.+...+.++++|+||+|+++.
T Consensus 116 ~~~-~~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 116 ELD-LEMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHH-HHHHHHHHHcCCCEEEEEECcccCCH
Confidence 555 35556666678999999999999864
No 28
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.34 E-value=3.7e-11 Score=134.87 Aligned_cols=150 Identities=19% Similarity=0.300 Sum_probs=92.2
Q ss_pred CCcchHHHHHHHHHHHHHhCCC--CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCcc
Q 005171 21 LGGSVIPLVNKLQDIFAQLGSQ--STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEE 97 (710)
Q Consensus 21 ~~~~l~~~~~kl~d~~~~~g~~--~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~ 97 (710)
-+..+-.+++.+.+.+..-+.. ..-...+|+|+|.+++|||||+|+|+|.+....+..+ +|+.++...
T Consensus 144 ~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~--------- 214 (429)
T TIGR03594 144 HGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIP--------- 214 (429)
T ss_pred cCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEE---------
Confidence 3455666777766544321211 1123468999999999999999999998754333221 222221111
Q ss_pred ceeeecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHH
Q 005171 98 YGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTM 177 (710)
Q Consensus 98 ~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~l 177 (710)
+... ...++||||||+.+..... ..++......
T Consensus 215 ------------------------------------------~~~~---~~~~~liDT~G~~~~~~~~--~~~e~~~~~~ 247 (429)
T TIGR03594 215 ------------------------------------------FERN---GKKYLLIDTAGIRRKGKVT--EGVEKYSVLR 247 (429)
T ss_pred ------------------------------------------EEEC---CcEEEEEECCCccccccch--hhHHHHHHHH
Confidence 1111 1258999999986543211 1223222233
Q ss_pred HHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccc
Q 005171 178 IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 178 v~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
...+++.+| ++++|+++......++ .++++.+...+.+.|+|+||+|+.
T Consensus 248 ~~~~~~~ad-~~ilV~D~~~~~~~~~-~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 248 TLKAIERAD-VVLLVLDATEGITEQD-LRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHhCC-EEEEEEECCCCccHHH-HHHHHHHHHcCCcEEEEEECcccC
Confidence 456888898 5566667776666555 566676666789999999999998
No 29
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.33 E-value=2.8e-11 Score=116.74 Aligned_cols=127 Identities=24% Similarity=0.350 Sum_probs=75.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
.++|+++|..++|||||+|+|++..+.+.+..+.|.... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~------------~~--------------------------- 42 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDS------------ID--------------------------- 42 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCc------------ee---------------------------
Confidence 568999999999999999999998653333222111110 00
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (710)
..+... ..++++|||||+.+..... ..++.........++..++ ++++|++++....... ..
T Consensus 43 -----------~~~~~~---~~~~~iiDtpG~~~~~~~~--~~~e~~~~~~~~~~~~~~d-~vi~v~d~~~~~~~~~-~~ 104 (174)
T cd01895 43 -----------VPFEYD---GKKYTLIDTAGIRRKGKVE--EGIEKYSVLRTLKAIERAD-VVLLVIDATEGITEQD-LR 104 (174)
T ss_pred -----------eEEEEC---CeeEEEEECCCCccccchh--ccHHHHHHHHHHHHHhhcC-eEEEEEeCCCCcchhH-HH
Confidence 011111 1357899999987542111 1112111122345667777 5555666665554433 45
Q ss_pred HHHhhCCCCCcEEEeeccccccCc
Q 005171 207 IAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 207 la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+.+.+...+.+.++|+||+|+.+.
T Consensus 105 ~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 105 IAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHHHHhcCCCEEEEEeccccCCc
Confidence 555555557899999999999865
No 30
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.32 E-value=5.4e-11 Score=133.85 Aligned_cols=151 Identities=23% Similarity=0.328 Sum_probs=92.3
Q ss_pred CCcchHHHHHHHHHHHHHhCCC-CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccc
Q 005171 21 LGGSVIPLVNKLQDIFAQLGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEY 98 (710)
Q Consensus 21 ~~~~l~~~~~kl~d~~~~~g~~-~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~ 98 (710)
-+..+-.+++.+.......... ..-+.++|+|+|.+|+|||||+|+|+|.+...++..+ +|+..+...+
T Consensus 146 ~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~--------- 216 (435)
T PRK00093 146 HGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPF--------- 216 (435)
T ss_pred CCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEE---------
Confidence 4455666666665421110000 0224578999999999999999999998754443322 2222211111
Q ss_pred eeeecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHH
Q 005171 99 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMI 178 (710)
Q Consensus 99 ~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv 178 (710)
.. ....+.||||||+.+....+ ..++.....-.
T Consensus 217 ------------------------------------------~~---~~~~~~lvDT~G~~~~~~~~--~~~e~~~~~~~ 249 (435)
T PRK00093 217 ------------------------------------------ER---DGQKYTLIDTAGIRRKGKVT--EGVEKYSVIRT 249 (435)
T ss_pred ------------------------------------------EE---CCeeEEEEECCCCCCCcchh--hHHHHHHHHHH
Confidence 00 11358999999986543211 12222222334
Q ss_pred HHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccC
Q 005171 179 MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 179 ~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.++++.+| ++++|+++......++ ..+++.+...+.++|+|+||+|+.+
T Consensus 250 ~~~~~~ad-~~ilViD~~~~~~~~~-~~i~~~~~~~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 250 LKAIERAD-VVLLVIDATEGITEQD-LRIAGLALEAGRALVIVVNKWDLVD 298 (435)
T ss_pred HHHHHHCC-EEEEEEeCCCCCCHHH-HHHHHHHHHcCCcEEEEEECccCCC
Confidence 56888888 6666777777776665 5667777667899999999999984
No 31
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.32 E-value=3.6e-11 Score=116.42 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=23.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
|.|+++|.+|+|||||+|+|++..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999999865
No 32
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.30 E-value=4.4e-11 Score=120.31 Aligned_cols=127 Identities=24% Similarity=0.383 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
-..|.|+|+|.+|||||||+|+|++..+.+.+...+|..+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~------------------------------------- 81 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTR------------------------------------- 81 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeE-------------------------------------
Confidence 3478999999999999999999999875433332222222100
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH-
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD- 203 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~- 203 (710)
.+. .+....++||||||+.+.. +......+...+ .++..++ .+++|.++.......+
T Consensus 82 --------------~~~--~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~~-~~~~~~d-~ii~v~D~~~~~~~~~~ 139 (204)
T cd01878 82 --------------RLR--LPDGREVLLTDTVGFIRDL----PHQLVEAFRSTL-EEVAEAD-LLLHVVDASDPDYEEQI 139 (204)
T ss_pred --------------EEE--ecCCceEEEeCCCccccCC----CHHHHHHHHHHH-HHHhcCC-eEEEEEECCCCChhhHH
Confidence 011 1111258999999985431 122333444443 4566777 5555566654333222
Q ss_pred --HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 --ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 --~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
...+.+.+...+.++++|+||+|+.+.
T Consensus 140 ~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 140 ETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred HHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 235556665557899999999999754
No 33
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.30 E-value=5.8e-11 Score=134.90 Aligned_cols=153 Identities=17% Similarity=0.206 Sum_probs=91.2
Q ss_pred cCCCCcchHHHHHHHHHHHHHhC--CCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCC-CccccceEEEEecccCC
Q 005171 18 AVPLGGSVIPLVNKLQDIFAQLG--SQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKT 94 (710)
Q Consensus 18 ~~~~~~~l~~~~~kl~d~~~~~g--~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~-g~~Tr~p~~~~l~~~~~ 94 (710)
++.-+..+-++++.|.+.+.... ....-..++|+|||.+|+|||||+|+|+|..+..++. ..+|+-++..
T Consensus 180 SA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~------- 252 (472)
T PRK03003 180 SALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDS------- 252 (472)
T ss_pred EcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceE-------
Confidence 33345566666666655432210 0011356899999999999999999999987533322 1223222111
Q ss_pred CccceeeecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHH
Q 005171 95 DEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARI 174 (710)
Q Consensus 95 ~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i 174 (710)
.+.+. ...+.||||||+.+..... .-.+.+
T Consensus 253 --------------------------------------------~~~~~---~~~~~l~DTaG~~~~~~~~---~~~e~~ 282 (472)
T PRK03003 253 --------------------------------------------LIELG---GKTWRFVDTAGLRRRVKQA---SGHEYY 282 (472)
T ss_pred --------------------------------------------EEEEC---CEEEEEEECCCcccccccc---chHHHH
Confidence 11111 1246899999985432111 011233
Q ss_pred HHH-HHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccC
Q 005171 175 RTM-IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 175 ~~l-v~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..+ ...+++.++ ++++|.++......++ +.++..+...+.++|+|+||+|+.+
T Consensus 283 ~~~~~~~~i~~ad-~vilV~Da~~~~s~~~-~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 283 ASLRTHAAIEAAE-VAVVLIDASEPISEQD-QRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHHHHHHhcCC-EEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECcccCC
Confidence 333 345788888 5556667766655555 4566666667899999999999975
No 34
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.30 E-value=1.5e-10 Score=130.52 Aligned_cols=146 Identities=22% Similarity=0.247 Sum_probs=85.8
Q ss_pred CcchHHHHHHHHHHHHHhCCCCC-CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccce
Q 005171 22 GGSVIPLVNKLQDIFAQLGSQST-IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYG 99 (710)
Q Consensus 22 ~~~l~~~~~kl~d~~~~~g~~~~-~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~ 99 (710)
...+..+.++|.++......... -+-++|+++|.+|+|||||+|+|+|.+...++..+ +|+-.+..
T Consensus 189 ~~~i~~l~~~l~~l~~~~~~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~------------ 256 (449)
T PRK05291 189 LEKLEELIAELEALLASARQGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEE------------ 256 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEE------------
Confidence 34455566666665544332211 24478999999999999999999998753332221 22211110
Q ss_pred eeecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHH
Q 005171 100 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIM 179 (710)
Q Consensus 100 ~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~ 179 (710)
.+.+. ...+.||||||+.+.. ..++..--....
T Consensus 257 ---------------------------------------~i~~~---g~~i~l~DT~G~~~~~-----~~ie~~gi~~~~ 289 (449)
T PRK05291 257 ---------------------------------------HINLD---GIPLRLIDTAGIRETD-----DEVEKIGIERSR 289 (449)
T ss_pred ---------------------------------------EEEEC---CeEEEEEeCCCCCCCc-----cHHHHHHHHHHH
Confidence 11111 1358999999986421 122222122345
Q ss_pred HHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 180 SYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 180 ~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.++..++ ++++|+++.......+ ..+... ..+.++++|+||+|+.+.
T Consensus 290 ~~~~~aD-~il~VvD~s~~~s~~~-~~~l~~--~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 290 EAIEEAD-LVLLVLDASEPLTEED-DEILEE--LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred HHHHhCC-EEEEEecCCCCCChhH-HHHHHh--cCCCCcEEEEEhhhcccc
Confidence 6888898 5666677765443333 344443 346899999999999753
No 35
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.29 E-value=6.4e-11 Score=128.23 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=75.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
-++.|++||.+|||||||||+|++...-......+|+.|..-.+.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~----------------------------------- 201 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVR----------------------------------- 201 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEE-----------------------------------
Confidence 357899999999999999999998752111112345555322111
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH-
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~- 204 (710)
+ ++...++|+||||+....... ..+.....+++++++ ++++|+++.....-.+.
T Consensus 202 ----------------~--~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~-vlI~ViD~s~~~s~e~~~ 256 (335)
T PRK12299 202 ----------------V--DDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTR-LLLHLVDIEAVDPVEDYK 256 (335)
T ss_pred ----------------e--CCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcC-EEEEEEcCCCCCCHHHHH
Confidence 0 112358999999997543211 123344456777887 56666666532222221
Q ss_pred --HHHHHhhCC--CCCcEEEeeccccccCc
Q 005171 205 --LQIAGIADP--DGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 --l~la~~~dp--~g~rtI~VlTK~Dl~~~ 230 (710)
...+..+++ ...+.|+|+||+|+.+.
T Consensus 257 ~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 257 TIRNELEKYSPELADKPRILVLNKIDLLDE 286 (335)
T ss_pred HHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence 222333333 36899999999999753
No 36
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.27 E-value=6.6e-11 Score=113.33 Aligned_cols=122 Identities=22% Similarity=0.329 Sum_probs=78.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCc--cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~--~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
+|+++|..|||||||+|+|++..+.+...+. +|+...
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~----------------------------------------- 39 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLIN----------------------------------------- 39 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEE-----------------------------------------
Confidence 4899999999999999999965555544432 111110
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCe--EEEEEecCCCcccchHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSC--LILAVTPANSDLANSDA 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~--iIL~V~~a~~d~~~~~~ 204 (710)
...+. ..+++|||||+..... +.+..+.+..++..|+...+. .+++|++........+
T Consensus 40 ------------~~~~~----~~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~- 99 (170)
T cd01876 40 ------------FFNVN----DKFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEID- 99 (170)
T ss_pred ------------EEEcc----CeEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhH-
Confidence 00010 1689999999865432 344456677788888875532 4555666654432222
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
..+.+.+...+.++++|+||+|++.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKADKLKKS 126 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChH
Confidence 445566665678999999999998654
No 37
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.27 E-value=6.6e-10 Score=124.76 Aligned_cols=148 Identities=24% Similarity=0.240 Sum_probs=88.3
Q ss_pred CCcchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEecccCCCccce
Q 005171 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYG 99 (710)
Q Consensus 21 ~~~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~~~~~~~~~~ 99 (710)
+...+..+.+.|.+++........-+-.+|+++|.+|+|||||+|+|++.+...++.- .+|+-....
T Consensus 177 ~~~~l~~~~~~l~~ll~~~~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~------------ 244 (442)
T TIGR00450 177 LNQLLLSIIAELKDILNSYKLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEG------------ 244 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEE------------
Confidence 4445556666666666655322223557899999999999999999999764222221 122221111
Q ss_pred eeecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHH
Q 005171 100 EFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIM 179 (710)
Q Consensus 100 ~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~ 179 (710)
.+.+. ...+.||||||+.... ..++..--....
T Consensus 245 ---------------------------------------~i~~~---g~~v~l~DTaG~~~~~-----~~ie~~gi~~~~ 277 (442)
T TIGR00450 245 ---------------------------------------DFELN---GILIKLLDTAGIREHA-----DFVERLGIEKSF 277 (442)
T ss_pred ---------------------------------------EEEEC---CEEEEEeeCCCcccch-----hHHHHHHHHHHH
Confidence 11111 1247899999986431 112221123456
Q ss_pred HHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 180 SYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 180 ~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.|++.++ ++++|.+++......+ . +...+...+.++|+|+||+|+.+.
T Consensus 278 ~~~~~aD-~il~V~D~s~~~s~~~-~-~l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 278 KAIKQAD-LVIYVLDASQPLTKDD-F-LIIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHHhhCC-EEEEEEECCCCCChhH-H-HHHHHhhCCCCEEEEEECccCCCc
Confidence 7889898 5666666665443333 2 444554457899999999999654
No 38
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.27 E-value=5.3e-11 Score=113.27 Aligned_cols=76 Identities=24% Similarity=0.281 Sum_probs=50.5
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..+.+|||||+.... ......+...+..++...+ ++++|+++.......+ ..+.+.+...+.++++|+||+|+
T Consensus 45 ~~~~i~DtpG~~~~~-----~~~~~~~~~~~~~~~~~~d-~ii~v~d~~~~~~~~~-~~~~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 45 REFILIDTGGIEPDD-----EGISKEIREQAELAIEEAD-VILFVVDGREGLTPAD-EEIAKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred eEEEEEECCCCCCch-----hHHHHHHHHHHHHHHHhCC-EEEEEEeccccCCccH-HHHHHHHHhcCCCEEEEEECccc
Confidence 368999999987542 1334455566667788888 5556666655443333 33444454456899999999999
Q ss_pred cCc
Q 005171 228 MDR 230 (710)
Q Consensus 228 ~~~ 230 (710)
.+.
T Consensus 118 ~~~ 120 (157)
T cd01894 118 IKE 120 (157)
T ss_pred CCh
Confidence 764
No 39
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.27 E-value=7.9e-11 Score=133.78 Aligned_cols=124 Identities=23% Similarity=0.214 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (710)
-..|.|+|||.+|+|||||+|+|+|..+..++..+ +|+-..
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~-------------------------------------- 77 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRV-------------------------------------- 77 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeE--------------------------------------
Confidence 45799999999999999999999997642222211 121110
Q ss_pred hhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 005171 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (710)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~ 203 (710)
...+... ...+.||||||+... ...+...+...+..|+..++ +||+|+++.......+
T Consensus 78 ---------------~~~~~~~-~~~~~l~DT~G~~~~-----~~~~~~~~~~~~~~~~~~aD-~il~VvD~~~~~s~~~ 135 (472)
T PRK03003 78 ---------------SYDAEWN-GRRFTVVDTGGWEPD-----AKGLQASVAEQAEVAMRTAD-AVLFVVDATVGATATD 135 (472)
T ss_pred ---------------EEEEEEC-CcEEEEEeCCCcCCc-----chhHHHHHHHHHHHHHHhCC-EEEEEEECCCCCCHHH
Confidence 1111100 124889999998632 13355677888888999998 6666666665544433
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..++..+...+.++|+|+||+|+..
T Consensus 136 -~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 136 -EAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred -HHHHHHHHHcCCCEEEEEECccCCc
Confidence 4455666566899999999999864
No 40
>PRK15494 era GTPase Era; Provisional
Probab=99.27 E-value=4.7e-11 Score=129.85 Aligned_cols=122 Identities=19% Similarity=0.292 Sum_probs=74.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..|++||.+|+|||||+|+|+|..+..++..+ +||... .+.+
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~------------~~~~------------------------- 95 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSII------------TGII------------------------- 95 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcE------------EEEE-------------------------
Confidence 37999999999999999999998763222221 222111 0000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (710)
.. + ...+.||||||+.... ..+...+...+..++..++.+| +|+++...+...+ ..
T Consensus 96 --------------~~--~-~~qi~~~DTpG~~~~~-----~~l~~~~~r~~~~~l~~aDvil-~VvD~~~s~~~~~-~~ 151 (339)
T PRK15494 96 --------------TL--K-DTQVILYDTPGIFEPK-----GSLEKAMVRCAWSSLHSADLVL-LIIDSLKSFDDIT-HN 151 (339)
T ss_pred --------------Ee--C-CeEEEEEECCCcCCCc-----ccHHHHHHHHHHHHhhhCCEEE-EEEECCCCCCHHH-HH
Confidence 00 1 1258999999986431 1233444555566788888544 5556655444433 23
Q ss_pred HHHhhCCCCCcEEEeeccccccCc
Q 005171 207 IAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 207 la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++..+...+.+.|+|+||+|+.+.
T Consensus 152 il~~l~~~~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 152 ILDKLRSLNIVPIFLLNKIDIESK 175 (339)
T ss_pred HHHHHHhcCCCEEEEEEhhcCccc
Confidence 444444446788999999999653
No 41
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.27 E-value=1.5e-10 Score=137.56 Aligned_cols=154 Identities=23% Similarity=0.247 Sum_probs=93.0
Q ss_pred cCCCCcchHHHHHHHHHHHHHhCCCC----CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccC-CCccccceEEEEeccc
Q 005171 18 AVPLGGSVIPLVNKLQDIFAQLGSQS----TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPLVLQLLQT 92 (710)
Q Consensus 18 ~~~~~~~l~~~~~kl~d~~~~~g~~~----~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~-~g~~Tr~p~~~~l~~~ 92 (710)
++.-+..+-.+++.|.+.+..-.... .-+.++|+++|.+|+|||||+|+|+|.++..++ ...+|+-+...
T Consensus 417 SA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~----- 491 (712)
T PRK09518 417 SAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDE----- 491 (712)
T ss_pred ECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCccee-----
Confidence 33345566667777665442210000 124689999999999999999999998753222 22233322110
Q ss_pred CCCccceeeecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHH
Q 005171 93 KTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEA 172 (710)
Q Consensus 93 ~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~ 172 (710)
.+.+. ...++||||||+.+..... .-.+
T Consensus 492 ----------------------------------------------~~~~~---~~~~~liDTaG~~~~~~~~---~~~e 519 (712)
T PRK09518 492 ----------------------------------------------IVEID---GEDWLFIDTAGIKRRQHKL---TGAE 519 (712)
T ss_pred ----------------------------------------------EEEEC---CCEEEEEECCCcccCcccc---hhHH
Confidence 11111 1257899999986432111 1012
Q ss_pred HHHHH-HHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 173 RIRTM-IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 173 ~i~~l-v~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+..+ ...+++.++ ++++|+++......++ ..++..+...+.++|+|+||+|+++.
T Consensus 520 ~~~~~r~~~~i~~ad-vvilViDat~~~s~~~-~~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 520 YYSSLRTQAAIERSE-LALFLFDASQPISEQD-LKVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHHHHHHHHhhcCC-EEEEEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 22222 346778888 5666777777666555 45666666678999999999999753
No 42
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.26 E-value=5.6e-11 Score=133.39 Aligned_cols=121 Identities=24% Similarity=0.245 Sum_probs=83.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.|+|||.+|+|||||+|+|+|.....++.. .+||.....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~---------------------------------------- 40 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYG---------------------------------------- 40 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEE----------------------------------------
Confidence 389999999999999999999864333221 233322111
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (710)
.+.+. ...+.||||||+... ...+.+.+...+..+++.++ ++++|+++...+...+ ..+
T Consensus 41 -----------~~~~~---~~~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~~~ad-~vl~vvD~~~~~~~~d-~~i 99 (429)
T TIGR03594 41 -----------DAEWG---GREFILIDTGGIEED-----DDGLDKQIREQAEIAIEEAD-VILFVVDGREGLTPED-EEI 99 (429)
T ss_pred -----------EEEEC---CeEEEEEECCCCCCc-----chhHHHHHHHHHHHHHhhCC-EEEEEEeCCCCCCHHH-HHH
Confidence 01111 124899999998532 24566788888999999998 6777777776655544 456
Q ss_pred HHhhCCCCCcEEEeeccccccCc
Q 005171 208 AGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 208 a~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++.+...+.++++|+||+|+...
T Consensus 100 ~~~l~~~~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 100 AKWLRKSGKPVILVANKIDGKKE 122 (429)
T ss_pred HHHHHHhCCCEEEEEECccCCcc
Confidence 66665567999999999998754
No 43
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.25 E-value=1.2e-10 Score=128.52 Aligned_cols=123 Identities=17% Similarity=0.221 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
+..|++||.+|||||||||+|++...--...-.+|+.|+.-.+..
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~----------------------------------- 203 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRV----------------------------------- 203 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEe-----------------------------------
Confidence 457999999999999999999997631111223566654332210
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCC----Ccccch
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN----SDLANS 202 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~----~d~~~~ 202 (710)
+....++|+||||+.+....+ ..+ .....+++.+++ ++|+|+++. .+.. .
T Consensus 204 ------------------~~~~~i~~vDtPGi~~~a~~~--~~L----g~~~l~~i~rad-vlL~VVD~s~~~~~d~~-e 257 (390)
T PRK12298 204 ------------------DDERSFVVADIPGLIEGASEG--AGL----GIRFLKHLERCR-VLLHLIDIAPIDGSDPV-E 257 (390)
T ss_pred ------------------CCCcEEEEEeCCCccccccch--hhH----HHHHHHHHHhCC-EEEEEeccCcccccChH-H
Confidence 111248999999998643211 111 122235788887 555666554 1111 1
Q ss_pred HHHHHHHhhCC-----CCCcEEEeeccccccCc
Q 005171 203 DALQIAGIADP-----DGYRTIGIITKLDIMDR 230 (710)
Q Consensus 203 ~~l~la~~~dp-----~g~rtI~VlTK~Dl~~~ 230 (710)
+...+.+++.. ...+.|+|+||+|+.+.
T Consensus 258 ~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 258 NARIIINELEKYSPKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred HHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence 11223333332 25899999999999753
No 44
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.24 E-value=1.2e-10 Score=121.21 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=81.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHh
Q 005171 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (710)
Q Consensus 44 ~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (710)
...-.+|+|+|.+|+|||||+|+|+|.....++.- .+|+.+.....
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~--------------------------------- 74 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSG--------------------------------- 74 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEE---------------------------------
Confidence 34566899999999999999999999987666432 34443322110
Q ss_pred hhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCCeEEEEEecCCC-cc
Q 005171 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANS-DL 199 (710)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~-d~ 199 (710)
.. ....++||||||+.....+. .....+.+.+.+|+. ..+ +||+|...+. ..
T Consensus 75 ------------------~~---~g~~i~vIDTPGl~~~~~~~---~~~~~~~~~I~~~l~~~~id-vIL~V~rlD~~r~ 129 (249)
T cd01853 75 ------------------TV---DGFKLNIIDTPGLLESVMDQ---RVNRKILSSIKRYLKKKTPD-VVLYVDRLDMYRR 129 (249)
T ss_pred ------------------EE---CCeEEEEEECCCcCcchhhH---HHHHHHHHHHHHHHhccCCC-EEEEEEcCCCCCC
Confidence 00 11358999999998653211 123445566777886 344 6777765543 23
Q ss_pred cchH--HHHHHHhhCCC--CCcEEEeeccccccCccc
Q 005171 200 ANSD--ALQIAGIADPD--GYRTIGIITKLDIMDRGT 232 (710)
Q Consensus 200 ~~~~--~l~la~~~dp~--g~rtI~VlTK~Dl~~~~~ 232 (710)
...+ .++.+++.-+. -.++|+|+||+|...+..
T Consensus 130 ~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 130 DYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred CHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 3332 23333332221 268999999999986653
No 45
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.24 E-value=9.1e-11 Score=113.68 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
.|++||.+|||||||+|+|+|...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~ 25 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP 25 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc
Confidence 489999999999999999998764
No 46
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.23 E-value=1.2e-10 Score=112.55 Aligned_cols=116 Identities=17% Similarity=0.229 Sum_probs=70.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
|.|+|+|..++|||||+|+|++..+.......+|......
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~---------------------------------------- 40 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAF---------------------------------------- 40 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccE----------------------------------------
Confidence 7899999999999999999998876433222222111000
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (710)
.+....+...++++|||||.. ....+...++..+++ +++|++++.... .+....
T Consensus 41 -----------~~~~~~~~~~~~~iiDtpG~~-------------~~~~~~~~~~~~~d~-il~v~d~~~~~~-~~~~~~ 94 (168)
T cd01887 41 -----------EVPAEVLKIPGITFIDTPGHE-------------AFTNMRARGASLTDI-AILVVAADDGVM-PQTIEA 94 (168)
T ss_pred -----------EEecccCCcceEEEEeCCCcH-------------HHHHHHHHHHhhcCE-EEEEEECCCCcc-HHHHHH
Confidence 000000123479999999953 234455667778874 555555554322 222333
Q ss_pred HHhhCCCCCcEEEeeccccccC
Q 005171 208 AGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 208 a~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
++.+...+.+.++|+||+|+.+
T Consensus 95 ~~~~~~~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 95 IKLAKAANVPFIVALNKIDKPN 116 (168)
T ss_pred HHHHHHcCCCEEEEEEceeccc
Confidence 3334345789999999999874
No 47
>PRK04213 GTP-binding protein; Provisional
Probab=99.23 E-value=2.1e-10 Score=115.05 Aligned_cols=125 Identities=23% Similarity=0.375 Sum_probs=75.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (710)
-..+.|+++|..|+|||||+|+|+|..+ +.+..+ +|+.+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~--------------------------------------- 46 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKP--------------------------------------- 46 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCc---------------------------------------
Confidence 3568999999999999999999999864 332211 11111
Q ss_pred hhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc-CCC--eEEEEEecCCCccc
Q 005171 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK-QPS--CLILAVTPANSDLA 200 (710)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~-~~~--~iIL~V~~a~~d~~ 200 (710)
..+.+ .++++|||||+...... +....+.++.+...|+. ..+ .++++|+++.....
T Consensus 47 --------------~~~~~-----~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~ 105 (201)
T PRK04213 47 --------------NHYDW-----GDFILTDLPGFGFMSGV--PKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIE 105 (201)
T ss_pred --------------eEEee-----cceEEEeCCcccccccc--CHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccc
Confidence 01111 15899999997433211 12334567777777775 332 25566666653211
Q ss_pred c----------hHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 201 N----------SDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 201 ~----------~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
. .....+.+.+...+.++++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 106 IIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKN 145 (201)
T ss_pred cccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCc
Confidence 0 01123344444457899999999999753
No 48
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.23 E-value=1.8e-10 Score=108.39 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=49.0
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.+++||||||+....... .........++..++ ++++|+++......... .+.......+.++++|+||+|+
T Consensus 45 ~~~~~~Dt~g~~~~~~~~------~~~~~~~~~~~~~~d-~il~v~~~~~~~~~~~~-~~~~~~~~~~~~~ivv~nK~D~ 116 (163)
T cd00880 45 GPVVLIDTPGIDEAGGLG------REREELARRVLERAD-LILFVVDADLRADEEEE-KLLELLRERGKPVLLVLNKIDL 116 (163)
T ss_pred CcEEEEECCCCCccccch------hhHHHHHHHHHHhCC-EEEEEEeCCCCCCHHHH-HHHHHHHhcCCeEEEEEEcccc
Confidence 479999999987653221 111345567788888 55555666554444332 2344444457899999999999
Q ss_pred cCcc
Q 005171 228 MDRG 231 (710)
Q Consensus 228 ~~~~ 231 (710)
....
T Consensus 117 ~~~~ 120 (163)
T cd00880 117 LPEE 120 (163)
T ss_pred CChh
Confidence 8653
No 49
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.22 E-value=1.2e-10 Score=120.15 Aligned_cols=129 Identities=16% Similarity=0.296 Sum_probs=85.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
-+|+|||.+|+|||||.|.++|.++.|++.-+ +||+-+- +
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~il------------g--------------------------- 113 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRIL------------G--------------------------- 113 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeee------------E---------------------------
Confidence 47999999999999999999999998887653 3333211 1
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCC-CcccchHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN-SDLANSDAL 205 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~-~d~~~~~~l 205 (710)
|......++.|+||||+.......+...+. .+.+-.+..+.++|++++++...+ ........+
T Consensus 114 ---------------i~ts~eTQlvf~DTPGlvs~~~~r~~~l~~-s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl 177 (379)
T KOG1423|consen 114 ---------------IITSGETQLVFYDTPGLVSKKMHRRHHLMM-SVLQNPRDAAQNADCVVVVVDASATRTPLHPRVL 177 (379)
T ss_pred ---------------EEecCceEEEEecCCcccccchhhhHHHHH-HhhhCHHHHHhhCCEEEEEEeccCCcCccChHHH
Confidence 111122479999999998765443333322 233345677888986555554432 222333346
Q ss_pred HHHHhhCCCCCcEEEeeccccccCcccc
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMDRGTD 233 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~~~~~ 233 (710)
.+.+.+. ..+.|.|+||+|...+...
T Consensus 178 ~~l~~ys--~ips~lvmnkid~~k~k~~ 203 (379)
T KOG1423|consen 178 HMLEEYS--KIPSILVMNKIDKLKQKRL 203 (379)
T ss_pred HHHHHHh--cCCceeeccchhcchhhhH
Confidence 6777775 3788999999999876554
No 50
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.22 E-value=2.9e-10 Score=107.95 Aligned_cols=119 Identities=29% Similarity=0.374 Sum_probs=72.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCcccc-ceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTR-RPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr-~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
+|+++|..++|||||+|+|++..+...+..++|. ....
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------------- 41 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIE----------------------------------------- 41 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEE-----------------------------------------
Confidence 6999999999999999999998753333222111 1100
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (710)
..+.+ ....+++|||||+.... .......-.....++.+++ ++++|.++.......+ .++
T Consensus 42 ----------~~~~~---~~~~~~i~DtpG~~~~~-----~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~-~~~ 101 (157)
T cd04164 42 ----------ESIDI---GGIPVRLIDTAGIRETE-----DEIEKIGIERAREAIEEAD-LVLFVIDASRGLDEED-LEI 101 (157)
T ss_pred ----------EEEEe---CCEEEEEEECCCcCCCc-----chHHHHHHHHHHHHHhhCC-EEEEEEECCCCCCHHH-HHH
Confidence 00111 11358999999986542 1122222233446667787 5566666665444444 334
Q ss_pred HHhhCCCCCcEEEeeccccccCc
Q 005171 208 AGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 208 a~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+. ..+.++++|+||+|+.+.
T Consensus 102 ~~~--~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 102 LEL--PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred HHh--hcCCCEEEEEEchhcCCc
Confidence 333 346899999999999864
No 51
>COG2262 HflX GTPases [General function prediction only]
Probab=99.21 E-value=4.1e-10 Score=121.21 Aligned_cols=167 Identities=20% Similarity=0.297 Sum_probs=112.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhh
Q 005171 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (710)
Q Consensus 44 ~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (710)
....|+|++||.+|||||||+|+|+|...+-.+.-..|=.|+
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpt-------------------------------------- 230 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPT-------------------------------------- 230 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCc--------------------------------------
Confidence 468999999999999999999999998763333322222221
Q ss_pred hhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 005171 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (710)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~ 203 (710)
.-++++ ++...+.|-||=|+++. -|+.+.+.++....+ ...+| ++|.|+++..+.....
T Consensus 231 -------------tR~~~l--~~g~~vlLtDTVGFI~~----LP~~LV~AFksTLEE-~~~aD-lllhVVDaSdp~~~~~ 289 (411)
T COG2262 231 -------------TRRIEL--GDGRKVLLTDTVGFIRD----LPHPLVEAFKSTLEE-VKEAD-LLLHVVDASDPEILEK 289 (411)
T ss_pred -------------eeEEEe--CCCceEEEecCccCccc----CChHHHHHHHHHHHH-hhcCC-EEEEEeecCChhHHHH
Confidence 111222 22346899999999864 468888888776544 56676 7777777776532222
Q ss_pred ---HHHHHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceEEEEcCChhhhhhcccHHHHHHHHHHhccCC
Q 005171 204 ---ALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSR 280 (710)
Q Consensus 204 ---~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~~~~s~~~a~~~E~~fF~~~ 280 (710)
...++.++.-...|+|.|+||+|++...... ......+ ..
T Consensus 290 ~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~------------------------------------~~~~~~~-~~ 332 (411)
T COG2262 290 LEAVEDVLAEIGADEIPIILVLNKIDLLEDEEIL------------------------------------AELERGS-PN 332 (411)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEecccccCchhhh------------------------------------hhhhhcC-CC
Confidence 2567788877779999999999998653200 0011111 24
Q ss_pred CccccccccCCchhHHHHHHHHHHHH
Q 005171 281 PVYNGLADRCGVPQLAKKLNQILVQH 306 (710)
Q Consensus 281 ~~~~~~~~~~Gi~~L~~~L~~~L~~~ 306 (710)
+.|-++..+.|+..|+..|.+.+...
T Consensus 333 ~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 333 PVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred eEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 57778888999998888888776644
No 52
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.20 E-value=2.8e-10 Score=128.16 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
-+..|++||.+|||||||||+|++..
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~ak 183 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAK 183 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCC
Confidence 45789999999999999999999875
No 53
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.19 E-value=2.1e-10 Score=136.49 Aligned_cols=123 Identities=20% Similarity=0.234 Sum_probs=83.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
.+|.|++||.+|+|||||+|+|+|..+..++..+ +|+..+..
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~------------------------------------- 316 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSY------------------------------------- 316 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEE-------------------------------------
Confidence 3688999999999999999999997642222211 22221110
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
..... ...+.||||||+... ...+...+...+..|+..+| +||+|+++...+...+
T Consensus 317 ----------------~~~~~-~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~aD-~iL~VvDa~~~~~~~d- 372 (712)
T PRK09518 317 ----------------DAEWA-GTDFKLVDTGGWEAD-----VEGIDSAIASQAQIAVSLAD-AVVFVVDGQVGLTSTD- 372 (712)
T ss_pred ----------------EEEEC-CEEEEEEeCCCcCCC-----CccHHHHHHHHHHHHHHhCC-EEEEEEECCCCCCHHH-
Confidence 00000 125889999998642 13456677788888999998 6667777776555444
Q ss_pred HHHHHhhCCCCCcEEEeeccccccC
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..+++.+...+.++|+|+||+|+..
T Consensus 373 ~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 373 ERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred HHHHHHHHhcCCCEEEEEECccccc
Confidence 3566666667899999999999864
No 54
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.19 E-value=8.1e-11 Score=119.69 Aligned_cols=131 Identities=20% Similarity=0.297 Sum_probs=76.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCC--CccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN--DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~--g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
+|+|+|..||||||++|+|+|.+.++.+. ..||+......-
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~------------------------------------- 44 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG------------------------------------- 44 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-------------------------------------
Confidence 69999999999999999999999887764 345544311110
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH--
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (710)
.+. ...+++|||||+.+.... +.++...+.+.+......++ ++|+|++.. .++..+.
T Consensus 45 --------------~~~---g~~v~VIDTPGl~d~~~~--~~~~~~~i~~~l~~~~~g~h-a~llVi~~~-r~t~~~~~~ 103 (212)
T PF04548_consen 45 --------------EVD---GRQVTVIDTPGLFDSDGS--DEEIIREIKRCLSLCSPGPH-AFLLVIPLG-RFTEEDREV 103 (212)
T ss_dssp --------------EET---TEEEEEEE--SSEETTEE--HHHHHHHHHHHHHHTTT-ES-EEEEEEETT-B-SHHHHHH
T ss_pred --------------eec---ceEEEEEeCCCCCCCccc--HHHHHHHHHHHHHhccCCCe-EEEEEEecC-cchHHHHHH
Confidence 000 136999999999776432 23333344443333445677 566667776 6665443
Q ss_pred HHHHHhhCCC--CCcEEEeeccccccCccccHHHHH
Q 005171 205 LQIAGIADPD--GYRTIGIITKLDIMDRGTDARNLL 238 (710)
Q Consensus 205 l~la~~~dp~--g~rtI~VlTK~Dl~~~~~~~~~~l 238 (710)
++.+..+-+. -+++|+|+|..|...+.. ..+++
T Consensus 104 l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-~~~~l 138 (212)
T PF04548_consen 104 LELLQEIFGEEIWKHTIVVFTHADELEDDS-LEDYL 138 (212)
T ss_dssp HHHHHHHHCGGGGGGEEEEEEEGGGGTTTT-HHHHH
T ss_pred HHHHHHHccHHHHhHhhHHhhhcccccccc-HHHHH
Confidence 4444443332 478999999999987654 33444
No 55
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.19 E-value=3e-10 Score=120.16 Aligned_cols=152 Identities=14% Similarity=0.272 Sum_probs=91.8
Q ss_pred cCCCCcchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCC-CccccceEEEEecccCCCc
Q 005171 18 AVPLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDE 96 (710)
Q Consensus 18 ~~~~~~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~-g~~Tr~p~~~~l~~~~~~~ 96 (710)
.+...+.|.+++.+|.+ .+....+|+|+|.+|+||||++|+|+|.....++. ..+|..++...
T Consensus 17 ~~~tq~~l~~~l~~l~~--------~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~-------- 80 (313)
T TIGR00991 17 PPATQTKLLELLGKLKE--------EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS-------- 80 (313)
T ss_pred CHHHHHHHHHHHHhccc--------ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE--------
Confidence 33345666666666653 24678899999999999999999999987533322 12222222110
Q ss_pred cceeeecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHH
Q 005171 97 EYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRT 176 (710)
Q Consensus 97 ~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~ 176 (710)
..+ ....+++|||||+.+. ..+.+...+
T Consensus 81 -------------------------------------------~~~---~G~~l~VIDTPGL~d~------~~~~e~~~~ 108 (313)
T TIGR00991 81 -------------------------------------------RTR---AGFTLNIIDTPGLIEG------GYINDQAVN 108 (313)
T ss_pred -------------------------------------------EEE---CCeEEEEEECCCCCch------HHHHHHHHH
Confidence 000 1236899999999864 233444556
Q ss_pred HHHHHhc--CCCeEEEEEecCCC-cccc--hHHHHHHHhhCCC--CCcEEEeeccccccCc-cccHHHHH
Q 005171 177 MIMSYIK--QPSCLILAVTPANS-DLAN--SDALQIAGIADPD--GYRTIGIITKLDIMDR-GTDARNLL 238 (710)
Q Consensus 177 lv~~yi~--~~~~iIL~V~~a~~-d~~~--~~~l~la~~~dp~--g~rtI~VlTK~Dl~~~-~~~~~~~l 238 (710)
.+..|+. ..+ +||+|...+. .+.. ...++.++.+-+. -.++|+|+|++|..++ +.+..+++
T Consensus 109 ~ik~~l~~~g~D-vVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv 177 (313)
T TIGR00991 109 IIKRFLLGKTID-VLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFF 177 (313)
T ss_pred HHHHHhhcCCCC-EEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHH
Confidence 6666665 355 6777754332 2222 2334544444222 4789999999999864 33444444
No 56
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.19 E-value=2.5e-10 Score=128.51 Aligned_cols=122 Identities=28% Similarity=0.369 Sum_probs=80.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
+|.|++||.+|+|||||+|+|+|.....++.. .+|+... ++
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~------------~~-------------------------- 42 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRI------------YG-------------------------- 42 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccce------------EE--------------------------
Confidence 37899999999999999999999864222221 1222111 00
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
.+.+.+ ..+.||||||+.... .++...++..+..++..++ +||+|+++.......+ .
T Consensus 43 -------------~~~~~~---~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad-~il~vvd~~~~~~~~~-~ 99 (435)
T PRK00093 43 -------------EAEWLG---REFILIDTGGIEPDD-----DGFEKQIREQAELAIEEAD-VILFVVDGRAGLTPAD-E 99 (435)
T ss_pred -------------EEEECC---cEEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCC-EEEEEEECCCCCCHHH-H
Confidence 111111 368999999987521 2355677888888999998 5666666665544443 3
Q ss_pred HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.+++.+...+.++|+|+||+|+.+
T Consensus 100 ~~~~~l~~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 100 EIAKILRKSNKPVILVVNKVDGPD 123 (435)
T ss_pred HHHHHHHHcCCcEEEEEECccCcc
Confidence 444444445799999999999654
No 57
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.19 E-value=2.8e-10 Score=123.13 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=73.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
-++.|++||.+|||||||||+|++..........+|+.|..-.+.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~----------------------------------- 200 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVR----------------------------------- 200 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEE-----------------------------------
Confidence 357899999999999999999998752111122345555322110
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-c--cch
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-L--ANS 202 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~--~~~ 202 (710)
+ .+...++|+||||+....... ..+.....+++.+++ ++|+|+++... . .-.
T Consensus 201 ----------------~--~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad-~ll~VvD~s~~~~~~~~e 255 (329)
T TIGR02729 201 ----------------V--DDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTR-VLLHLIDISPLDGRDPIE 255 (329)
T ss_pred ----------------e--CCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhC-EEEEEEcCccccccCHHH
Confidence 0 011358999999997543111 123344456677787 56666665532 1 111
Q ss_pred HHHHH---HHhhCC--CCCcEEEeeccccccCc
Q 005171 203 DALQI---AGIADP--DGYRTIGIITKLDIMDR 230 (710)
Q Consensus 203 ~~l~l---a~~~dp--~g~rtI~VlTK~Dl~~~ 230 (710)
+...+ +..+++ ...+.++|+||+|+.+.
T Consensus 256 ~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 256 DYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred HHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 11122 233333 36899999999999754
No 58
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.18 E-value=2.7e-10 Score=110.01 Aligned_cols=116 Identities=14% Similarity=0.159 Sum_probs=71.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+|+|.+++|||||+++|++..+.+.....++.....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~----------------------------------------- 42 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFAT----------------------------------------- 42 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEE-----------------------------------------
Confidence 579999999999999999999987643322111111000
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---H
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---A 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~ 204 (710)
..+.+.+ ....+.||||||. ..+..+...|+..++++|+++...+ ...-.+ +
T Consensus 43 ----------~~~~~~~-~~~~~~l~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~-~~s~~~~~~~ 97 (165)
T cd01868 43 ----------RSIQIDG-KTIKAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLVYDITK-KQTFENVERW 97 (165)
T ss_pred ----------EEEEECC-EEEEEEEEeCCCh-------------HHHHHHHHHHHCCCCEEEEEEECcC-HHHHHHHHHH
Confidence 0111111 1135889999993 2455677788898886665554432 211122 2
Q ss_pred HHHHHhhCCCCCcEEEeeccccccC
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
+..+++..+.+.++++|.||+|+.+
T Consensus 98 ~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 98 LKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred HHHHHHhCCCCCeEEEEEECccccc
Confidence 3334444555689999999999864
No 59
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.18 E-value=4.1e-10 Score=113.12 Aligned_cols=72 Identities=19% Similarity=0.275 Sum_probs=43.8
Q ss_pred ccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccc
Q 005171 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (710)
Q Consensus 147 ~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~D 226 (710)
.+++++|||||+...... .++.++.+ .+...+ ++|+|.+ .++...+ ..+++.+...+.++++|+||+|
T Consensus 51 ~~~l~l~DtpG~~~~~~~-----~~~~l~~~---~~~~~d-~~l~v~~--~~~~~~d-~~~~~~l~~~~~~~ilV~nK~D 118 (197)
T cd04104 51 FPNVTLWDLPGIGSTAFP-----PDDYLEEM---KFSEYD-FFIIISS--TRFSSND-VKLAKAIQCMGKKFYFVRTKVD 118 (197)
T ss_pred CCCceEEeCCCCCcccCC-----HHHHHHHh---CccCcC-EEEEEeC--CCCCHHH-HHHHHHHHHhCCCEEEEEeccc
Confidence 357999999998754211 12222221 134555 5555543 3454444 4555555556789999999999
Q ss_pred ccCc
Q 005171 227 IMDR 230 (710)
Q Consensus 227 l~~~ 230 (710)
+..+
T Consensus 119 ~~~~ 122 (197)
T cd04104 119 RDLS 122 (197)
T ss_pred chhh
Confidence 9654
No 60
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.18 E-value=5.2e-10 Score=108.24 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=71.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||++++++..+.+... .|... ..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--~t~~~-~~--------------------------------------- 40 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG--NTIGV-DF--------------------------------------- 40 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC--Cccce-EE---------------------------------------
Confidence 3579999999999999999999876532211 11000 00
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SD 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~ 203 (710)
....+.+.+ ....+.||||||- +.+..+...+++.++++++++. +....+- ..
T Consensus 41 ---------~~~~~~~~~-~~~~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~llv~d-~~~~~s~~~~~~ 96 (165)
T cd01864 41 ---------TMKTLEIEG-KRVKLQIWDTAGQ-------------ERFRTITQSYYRSANGAIIAYD-ITRRSSFESVPH 96 (165)
T ss_pred ---------EEEEEEECC-EEEEEEEEECCCh-------------HHHHHHHHHHhccCCEEEEEEE-CcCHHHHHhHHH
Confidence 000111111 1135899999992 3456677888999986666554 4432211 12
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++..+....+.+.+.|+|+||+|+...
T Consensus 97 ~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 97 WIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccc
Confidence 333344444556889999999999753
No 61
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.16 E-value=6.7e-10 Score=123.50 Aligned_cols=120 Identities=18% Similarity=0.260 Sum_probs=69.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCcc-C-CCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPR-G-NDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~-~-~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
++.|++||.+|||||||||+|++.. |. + .-.+|..|..-.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~------------------------------------ 199 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGV------------------------------------ 199 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEE------------------------------------
Confidence 4589999999999999999999876 22 1 122344442111
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc---ccc
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD---LAN 201 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d---~~~ 201 (710)
+.+ +....++|+||||+....... ..+.....+++.+++ ++++|++++.. -..
T Consensus 200 ---------------v~~--~~~~~~~laD~PGliega~~~------~gLg~~fLrhier~~-llI~VID~s~~~~~dp~ 255 (424)
T PRK12297 200 ---------------VET--DDGRSFVMADIPGLIEGASEG------VGLGHQFLRHIERTR-VIVHVIDMSGSEGRDPI 255 (424)
T ss_pred ---------------EEE--eCCceEEEEECCCCccccccc------chHHHHHHHHHhhCC-EEEEEEeCCccccCChH
Confidence 011 111358999999997532111 112223345566777 55555555421 111
Q ss_pred hHH---HHHHHhhCC--CCCcEEEeecccccc
Q 005171 202 SDA---LQIAGIADP--DGYRTIGIITKLDIM 228 (710)
Q Consensus 202 ~~~---l~la~~~dp--~g~rtI~VlTK~Dl~ 228 (710)
.+. ...+..+++ .+++.|+|+||+|+.
T Consensus 256 e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 256 EDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred HHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 111 223333343 368999999999974
No 62
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.16 E-value=3.9e-10 Score=122.28 Aligned_cols=133 Identities=26% Similarity=0.367 Sum_probs=74.3
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCC-----CccCCCccccceEEEEecccCCCccc
Q 005171 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF-----LPRGNDICTRRPLVLQLLQTKTDEEY 98 (710)
Q Consensus 24 ~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~-----lP~~~g~~Tr~p~~~~l~~~~~~~~~ 98 (710)
.+-....++++.+..+.. ..+ .|+|+|+.|+|||||||||-|..- .|+|.--+|..|
T Consensus 16 ~~~~~~s~i~~~l~~~~~---~~l-~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~-------------- 77 (376)
T PF05049_consen 16 NLQEVVSKIREALKDIDN---APL-NIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP-------------- 77 (376)
T ss_dssp -HHHHHHHHHHHHHHHHH-----E-EEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS---------------
T ss_pred CHHHHHHHHHHHHHHhhc---Cce-EEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC--------------
Confidence 456677888888776652 222 699999999999999999988631 122221112111
Q ss_pred eeeecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHH
Q 005171 99 GEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMI 178 (710)
Q Consensus 99 ~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv 178 (710)
-....|+.|+++|||+||+.... . .....+.++
T Consensus 78 -----------------------------------------~~Y~~p~~pnv~lWDlPG~gt~~---f--~~~~Yl~~~- 110 (376)
T PF05049_consen 78 -----------------------------------------TPYPHPKFPNVTLWDLPGIGTPN---F--PPEEYLKEV- 110 (376)
T ss_dssp -----------------------------------------EEEE-SS-TTEEEEEE--GGGSS-------HHHHHHHT-
T ss_pred -----------------------------------------eeCCCCCCCCCeEEeCCCCCCCC---C--CHHHHHHHc-
Confidence 11234667899999999986432 1 112122221
Q ss_pred HHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 179 MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 179 ~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
-+..-| .+++|++ ..+...+ ..+++++...|++..+|-||+|.
T Consensus 111 --~~~~yD-~fiii~s--~rf~~nd-v~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 111 --KFYRYD-FFIIISS--ERFTEND-VQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp --TGGG-S-EEEEEES--SS--HHH-HHHHHHHHHTT-EEEEEE--HHH
T ss_pred --cccccC-EEEEEeC--CCCchhh-HHHHHHHHHcCCcEEEEEecccc
Confidence 123445 4444443 3455445 68999999999999999999996
No 63
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.15 E-value=5e-10 Score=107.47 Aligned_cols=67 Identities=21% Similarity=0.358 Sum_probs=41.1
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--HHHHHHHhhCCCCCcEEEeeccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~~l~la~~~dp~g~rtI~VlTK~ 225 (710)
..+.+|||||.. .+......++..++ ++++|+++..+...+ +.+.+++... ..++++|+||+
T Consensus 51 ~~~~~~DtpG~~-------------~~~~~~~~~~~~ad-~ii~V~d~~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK~ 114 (164)
T cd04171 51 KRLGFIDVPGHE-------------KFIKNMLAGAGGID-LVLLVVAADEGIMPQTREHLEILELLG--IKRGLVVLTKA 114 (164)
T ss_pred cEEEEEECCChH-------------HHHHHHHhhhhcCC-EEEEEEECCCCccHhHHHHHHHHHHhC--CCcEEEEEECc
Confidence 368999999942 23344557788888 455555665432221 2223333321 24899999999
Q ss_pred cccCc
Q 005171 226 DIMDR 230 (710)
Q Consensus 226 Dl~~~ 230 (710)
|+.+.
T Consensus 115 Dl~~~ 119 (164)
T cd04171 115 DLVDE 119 (164)
T ss_pred cccCH
Confidence 99753
No 64
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.15 E-value=4.4e-10 Score=107.90 Aligned_cols=115 Identities=19% Similarity=0.236 Sum_probs=69.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+++|.+++|||||+|+|++..+.+......|......
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSK----------------------------------------- 40 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEE-----------------------------------------
Confidence 599999999999999999999987432221111111000
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---H
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l 205 (710)
.+.+.+ ....+.+|||||- .....++..+++.+++ +++|.+.+..-+-.+. +
T Consensus 41 ----------~~~~~~-~~~~l~~~D~~G~-------------~~~~~~~~~~~~~~~~-ii~v~d~~~~~s~~~~~~~~ 95 (161)
T cd01861 41 ----------TMYLED-KTVRLQLWDTAGQ-------------ERFRSLIPSYIRDSSV-AVVVYDITNRQSFDNTDKWI 95 (161)
T ss_pred ----------EEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhccCCE-EEEEEECcCHHHHHHHHHHH
Confidence 111111 0125899999993 2456677889999985 4455555432111222 2
Q ss_pred HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.......+.+.++++|+||+|+..
T Consensus 96 ~~~~~~~~~~~~iilv~nK~D~~~ 119 (161)
T cd01861 96 DDVRDERGNDVIIVLVGNKTDLSD 119 (161)
T ss_pred HHHHHhCCCCCEEEEEEEChhccc
Confidence 222222233589999999999964
No 65
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.15 E-value=4.5e-10 Score=109.35 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
+.+|+|||.+++|||||++++++..+-+......+....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~----------------------------------------- 42 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG----------------------------------------- 42 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE-----------------------------------------
Confidence 358999999999999999999998764333221111110
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (710)
...+.+.+ ....+.||||||. +.+..+...|++.++++|++ .+++....-.+...
T Consensus 43 ----------~~~~~~~~-~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~il~v-~d~~~~~s~~~~~~ 97 (168)
T cd01866 43 ----------ARMITIDG-KQIKLQIWDTAGQ-------------ESFRSITRSYYRGAAGALLV-YDITRRETFNHLTS 97 (168)
T ss_pred ----------EEEEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhccCCEEEEE-EECCCHHHHHHHHH
Confidence 00111111 0125899999992 35566778899999865554 45543222223333
Q ss_pred HHHhh---CCCCCcEEEeeccccccC
Q 005171 207 IAGIA---DPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 207 la~~~---dp~g~rtI~VlTK~Dl~~ 229 (710)
+..++ ...+.++++|.||+|+.+
T Consensus 98 ~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 98 WLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred HHHHHHHhCCCCCcEEEEEECccccc
Confidence 33322 223678999999999974
No 66
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.15 E-value=9.3e-10 Score=110.71 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=69.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+|+|.+++|||||++.+++.+| +....++|...+.. .
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~------------~---------------------------- 40 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYR------------P---------------------------- 40 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCccccccce------------e----------------------------
Confidence 599999999999999999999876 33222222111000 0
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH-
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI- 207 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l- 207 (710)
.+.+.+ ....+.||||||....+.. ....+......+++.++++|+++ +.+...+-..+..+
T Consensus 41 ----------~i~~~~-~~~~l~i~Dt~G~~~~~~~-----~~~e~~~~~~~~~~~ad~iilv~-D~~~~~S~~~~~~~~ 103 (198)
T cd04142 41 ----------AVVLSG-RVYDLHILDVPNMQRYPGT-----AGQEWMDPRFRGLRNSRAFILVY-DICSPDSFHYVKLLR 103 (198)
T ss_pred ----------EEEECC-EEEEEEEEeCCCcccCCcc-----chhHHHHHHHhhhccCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 011111 1135889999997543211 11122334556788898555554 44432211111122
Q ss_pred --HHhh---CCCCCcEEEeeccccccC
Q 005171 208 --AGIA---DPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 208 --a~~~---dp~g~rtI~VlTK~Dl~~ 229 (710)
+... ...+.++++|.||+|+.+
T Consensus 104 ~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 104 QQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred HHHHHhcccCCCCCCEEEEEECccccc
Confidence 2222 245689999999999964
No 67
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.14 E-value=4.2e-10 Score=106.47 Aligned_cols=115 Identities=19% Similarity=0.237 Sum_probs=69.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+++|.+++|||||+|+|++..+.+... .++..-.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~-~t~~~~~------------------------------------------ 37 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYK-STIGVDF------------------------------------------ 37 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccC-Cceeeee------------------------------------------
Confidence 369999999999999999999987643311 1110000
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~--- 204 (710)
....+.+. .....+.+||+||. ..+..+...++++.+++|++ +++...-.-...
T Consensus 38 --------~~~~~~~~-~~~~~~~l~D~~g~-------------~~~~~~~~~~~~~~d~ii~v-~d~~~~~~~~~~~~~ 94 (159)
T cd00154 38 --------KSKTIEID-GKTVKLQIWDTAGQ-------------ERFRSITPSYYRGAHGAILV-YDITNRESFENLDKW 94 (159)
T ss_pred --------EEEEEEEC-CEEEEEEEEecCCh-------------HHHHHHHHHHhcCCCEEEEE-EECCCHHHHHHHHHH
Confidence 00011110 01136899999994 24556778889999855555 444432222222
Q ss_pred HHHHHhhCCCCCcEEEeecccccc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
+.........+.++++|+||+|+.
T Consensus 95 ~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 95 LKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHhCCCCCcEEEEEEccccc
Confidence 223333333468999999999997
No 68
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=4.3e-10 Score=118.19 Aligned_cols=169 Identities=16% Similarity=0.219 Sum_probs=108.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCc---cCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLP---RGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP---~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (710)
.-|.|.++|.-|.||||+|+.|++.++ | .|..++|.+-+.+....+...-......-.+.+.|..+...-.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~----- 130 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGN----- 130 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHH-----
Confidence 579999999999999999999999986 5 3566788777666554443311111111111222222222211
Q ss_pred hhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 005171 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (710)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (710)
+|-..-.+..+..+-...+++|||||+-+... |.-.-.-.+...+..|+.+.|-|||+..++.-|++..
T Consensus 131 ---------aflnRf~csqmp~~vLe~vtiVdtPGILsgeK--QrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdE 199 (532)
T KOG1954|consen 131 ---------AFLNRFMCSQLPNQVLESVTIVDTPGILSGEK--QRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE 199 (532)
T ss_pred ---------HHHHHHHHhcCChhhhhheeeeccCcccccch--hcccccCChHHHHHHHHHhccEEEEEechhhccccHH
Confidence 11122223444455556899999999986532 2111122356677789999997777777777666543
Q ss_pred HHHHHHHhhCCCCCcEEEeeccccccCccc
Q 005171 203 DALQIAGIADPDGYRTIGIITKLDIMDRGT 232 (710)
Q Consensus 203 ~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~ 232 (710)
- .+.+..+......+-+|+||.|.++...
T Consensus 200 f-~~vi~aLkG~EdkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 200 F-KRVIDALKGHEDKIRVVLNKADQVDTQQ 228 (532)
T ss_pred H-HHHHHHhhCCcceeEEEeccccccCHHH
Confidence 2 4677788888889999999999998654
No 69
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.12 E-value=6.6e-10 Score=109.19 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=45.1
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..++||||||.. .+......++..++++|+ |+++........ ..+...+...+.++++|+||+|+
T Consensus 62 ~~~~liDtpG~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~~~~~-~~~~~~~~~~~~~i~iv~nK~D~ 126 (189)
T cd00881 62 RRVNFIDTPGHE-------------DFSSEVIRGLSVSDGAIL-VVDANEGVQPQT-REHLRIAREGGLPIIVAINKIDR 126 (189)
T ss_pred EEEEEEeCCCcH-------------HHHHHHHHHHHhcCEEEE-EEECCCCCcHHH-HHHHHHHHHCCCCeEEEEECCCC
Confidence 479999999964 234556677888885554 555554332222 33333443357899999999999
Q ss_pred cCc
Q 005171 228 MDR 230 (710)
Q Consensus 228 ~~~ 230 (710)
..+
T Consensus 127 ~~~ 129 (189)
T cd00881 127 VGE 129 (189)
T ss_pred cch
Confidence 863
No 70
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=5.5e-10 Score=108.45 Aligned_cols=122 Identities=21% Similarity=0.281 Sum_probs=78.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhh
Q 005171 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (710)
Q Consensus 44 ~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (710)
.+..-.||++|+||+||+|||+..+--.| -+ .|...
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~f-d~---------------------~YqAT---------------------- 54 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKF-DN---------------------TYQAT---------------------- 54 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhh-cc---------------------cccce----------------------
Confidence 35557899999999999999999987665 11 11110
Q ss_pred hhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEE--ecCCCcccc
Q 005171 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAV--TPANSDLAN 201 (710)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V--~~a~~d~~~ 201 (710)
.|++...-++.+.+. ...|.||||.| ++.++.++-.|++++..+|++. .+.+.-..+
T Consensus 55 -------IGiDFlskt~~l~d~-~vrLQlWDTAG-------------QERFrslipsY~Rds~vaviVyDit~~~Sfe~t 113 (221)
T KOG0094|consen 55 -------IGIDFLSKTMYLEDR-TVRLQLWDTAG-------------QERFRSLIPSYIRDSSVAVIVYDITDRNSFENT 113 (221)
T ss_pred -------eeeEEEEEEEEEcCc-EEEEEEEeccc-------------HHHHhhhhhhhccCCeEEEEEEeccccchHHHH
Confidence 111111112223222 24699999999 7899999999999998555443 233333344
Q ss_pred hHHHHHHHhhCCC-CCcEEEeeccccccCc
Q 005171 202 SDALQIAGIADPD-GYRTIGIITKLDIMDR 230 (710)
Q Consensus 202 ~~~l~la~~~dp~-g~rtI~VlTK~Dl~~~ 230 (710)
..++.-++.-... +..+++|.||.||.++
T Consensus 114 ~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 114 SKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred HHHHHHHHhccCCCceEEEEEcccccccch
Confidence 4444433333333 4677788999999986
No 71
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.12 E-value=1.3e-09 Score=105.65 Aligned_cols=115 Identities=15% Similarity=0.301 Sum_probs=68.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+|+|..++|||||+|+|++..+.+.....++.....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~------------------------------------------ 39 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT------------------------------------------ 39 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEE------------------------------------------
Confidence 69999999999999999999987633222111110000
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH---
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL--- 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l--- 205 (710)
..+.+.+ ....+.+||+||.. ....+...|+++++++|+++. ++....-....
T Consensus 40 ---------~~~~~~~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d-~~~~~~~~~~~~~~ 95 (172)
T cd01862 40 ---------KEVTVDD-KLVTLQIWDTAGQE-------------RFQSLGVAFYRGADCCVLVYD-VTNPKSFESLDSWR 95 (172)
T ss_pred ---------EEEEECC-EEEEEEEEeCCChH-------------HHHhHHHHHhcCCCEEEEEEE-CCCHHHHHHHHHHH
Confidence 0111111 11357899999932 344566788999986666654 43222111111
Q ss_pred -HHHHhhC---CCCCcEEEeeccccccC
Q 005171 206 -QIAGIAD---PDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 -~la~~~d---p~g~rtI~VlTK~Dl~~ 229 (710)
.+..... +.+.++++|+||+|+.+
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 96 DEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHHHHhcCccCCCCceEEEEEECccccc
Confidence 2233333 33789999999999985
No 72
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.11 E-value=9.7e-10 Score=104.89 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=42.7
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~D 226 (710)
++.||||||+....... .+ ..+...|+. ..+ ++++|+++..... ...+..++...+.++++|+||+|
T Consensus 44 ~~~liDtpG~~~~~~~~----~~---~~~~~~~~~~~~~d-~vi~v~d~~~~~~---~~~~~~~~~~~~~~~iiv~NK~D 112 (158)
T cd01879 44 EIEIVDLPGTYSLSPYS----ED---EKVARDFLLGEKPD-LIVNVVDATNLER---NLYLTLQLLELGLPVVVALNMID 112 (158)
T ss_pred EEEEEECCCccccCCCC----hh---HHHHHHHhcCCCCc-EEEEEeeCCcchh---HHHHHHHHHHcCCCEEEEEehhh
Confidence 68999999986532111 11 133445664 777 5555556554211 12344444445789999999999
Q ss_pred ccCc
Q 005171 227 IMDR 230 (710)
Q Consensus 227 l~~~ 230 (710)
+.+.
T Consensus 113 l~~~ 116 (158)
T cd01879 113 EAEK 116 (158)
T ss_pred hccc
Confidence 9754
No 73
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.11 E-value=9.4e-10 Score=106.66 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=71.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
-+|+|+|..++|||||++++++..|.+.... ++......
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~-t~~~~~~~---------------------------------------- 41 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPH-TIGVEFGT---------------------------------------- 41 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCc-ccceeEEE----------------------------------------
Confidence 3699999999999999999999876433221 11111000
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DA 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~ 204 (710)
..+.+.+ ....+.||||||. +.++.+...|+++++++|+++...+. .+-. .+
T Consensus 42 ----------~~~~~~~-~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~~~~ilv~d~~~~-~s~~~~~~~ 96 (166)
T cd04122 42 ----------RIIEVNG-QKIKLQIWDTAGQ-------------ERFRAVTRSYYRGAAGALMVYDITRR-STYNHLSSW 96 (166)
T ss_pred ----------EEEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhcCCCEEEEEEECCCH-HHHHHHHHH
Confidence 0111111 1135899999993 35667778899999976666654332 1111 22
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+...+.......++++|.||+|+...
T Consensus 97 ~~~~~~~~~~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 97 LTDARNLTNPNTVIFLIGNKADLEAQ 122 (166)
T ss_pred HHHHHHhCCCCCeEEEEEECcccccc
Confidence 33333444446789999999999643
No 74
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.10 E-value=9.8e-10 Score=107.60 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=43.5
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..+.||||||.. .+..++..|+..++++|++ .++.......+ +.....+...+.++++|+||+|+
T Consensus 67 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~ad~~i~v-~D~~~~~~~~~-~~~~~~~~~~~~~iiiv~NK~Dl 131 (179)
T cd01890 67 YLLNLIDTPGHV-------------DFSYEVSRSLAACEGALLL-VDATQGVEAQT-LANFYLALENNLEIIPVINKIDL 131 (179)
T ss_pred EEEEEEECCCCh-------------hhHHHHHHHHHhcCeEEEE-EECCCCccHhh-HHHHHHHHHcCCCEEEEEECCCC
Confidence 468899999964 2445667788999865554 45554332222 22223333356889999999998
Q ss_pred cC
Q 005171 228 MD 229 (710)
Q Consensus 228 ~~ 229 (710)
.+
T Consensus 132 ~~ 133 (179)
T cd01890 132 PS 133 (179)
T ss_pred Cc
Confidence 64
No 75
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.10 E-value=7.1e-10 Score=117.22 Aligned_cols=137 Identities=20% Similarity=0.256 Sum_probs=78.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccc-cceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT-RRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~T-r~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.|+|||..|+|||||+|+|++..+.+....... ..+ ..
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~----~~------------------------------------- 44 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEH----ID------------------------------------- 44 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccc----cC-------------------------------------
Confidence 699999999999999999999987655432110 000 00
Q ss_pred CCCCcccccceEEEEecC-CccceEEEeCCCCCcCCC-CCCchHHHHHHHHHHHHHh------------c--CCCeEEEE
Q 005171 128 GGNKGVSDKQIRLKIFSP-HVLDITLVDLPGITKVPV-GEQPADIEARIRTMIMSYI------------K--QPSCLILA 191 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p-~~~~LtLVDtPGl~~~~~-~~q~~di~~~i~~lv~~yi------------~--~~~~iIL~ 191 (710)
...+-......+... ....|+||||||+.+.-. .++-..+...+.+....|+ . +.++++++
T Consensus 45 ---~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~ 121 (276)
T cd01850 45 ---KTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYF 121 (276)
T ss_pred ---CceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEE
Confidence 000000011111111 124699999999975422 1222233333333333333 2 24444555
Q ss_pred EecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 192 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 192 V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
+.+....+...| +.+++.+.. +.++|+|+||+|++.+.
T Consensus 122 i~~~~~~l~~~D-~~~lk~l~~-~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 122 IEPTGHGLKPLD-IEFMKRLSK-RVNIIPVIAKADTLTPE 159 (276)
T ss_pred EeCCCCCCCHHH-HHHHHHHhc-cCCEEEEEECCCcCCHH
Confidence 555555665555 677777764 68999999999998643
No 76
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.10 E-value=1.4e-09 Score=105.24 Aligned_cols=113 Identities=20% Similarity=0.297 Sum_probs=68.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+|||..++|||||++.+++..+-|.... |..+. + +..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~--~~~~~-~----------~~~---------------------------- 40 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLS--TYALT-L----------YKH---------------------------- 40 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCC--ceeeE-E----------EEE----------------------------
Confidence 599999999999999999998876433211 10000 0 000
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---HH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---AL 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l 205 (710)
.+.+.+ ....+.||||||- +.+..+...|+++++++|+++ +.+....-.+ ++
T Consensus 41 ----------~~~~~~-~~~~~~i~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~ 95 (161)
T cd04124 41 ----------NAKFEG-KTILVDFWDTAGQ-------------ERFQTMHASYYHKAHACILVF-DVTRKITYKNLSKWY 95 (161)
T ss_pred ----------EEEECC-EEEEEEEEeCCCc-------------hhhhhhhHHHhCCCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 001110 1136889999993 356677788999998655554 4443322222 22
Q ss_pred HHHHhhCCCCCcEEEeecccccc
Q 005171 206 QIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
..++...+ ..++++|+||+|+.
T Consensus 96 ~~i~~~~~-~~p~ivv~nK~Dl~ 117 (161)
T cd04124 96 EELREYRP-EIPCIVVANKIDLD 117 (161)
T ss_pred HHHHHhCC-CCcEEEEEECccCc
Confidence 33333322 57999999999984
No 77
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.10 E-value=1e-09 Score=106.42 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=44.2
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hHHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~~l~la~~~dp~g~rtI~VlTK 224 (710)
..+.||||||.. ....+...|+++.+++++++. ....-.- .+++..++...+...++++|.||
T Consensus 50 ~~~~l~Dt~g~~-------------~~~~~~~~~~~~~~~~l~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 115 (165)
T cd01865 50 VKLQIWDTAGQE-------------RYRTITTAYYRGAMGFILMYD-ITNEESFNAVQDWSTQIKTYSWDNAQVILVGNK 115 (165)
T ss_pred EEEEEEECCChH-------------HHHHHHHHHccCCcEEEEEEE-CCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEEC
Confidence 358899999932 445667788999986665554 3322111 12233344444456789999999
Q ss_pred ccccCc
Q 005171 225 LDIMDR 230 (710)
Q Consensus 225 ~Dl~~~ 230 (710)
+|+.+.
T Consensus 116 ~Dl~~~ 121 (165)
T cd01865 116 CDMEDE 121 (165)
T ss_pred cccCcc
Confidence 999753
No 78
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.10 E-value=1.1e-09 Score=106.40 Aligned_cols=117 Identities=16% Similarity=0.219 Sum_probs=70.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||++++++..|-+. ..+++....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~-~~~t~~~~~----------------------------------------- 40 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS-FISTIGIDF----------------------------------------- 40 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc-cccCccceE-----------------------------------------
Confidence 36899999999999999999999876321 111111000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (710)
....+.+.+ ....+.||||||.. ....+...|+++++++|+++ +++...+-..
T Consensus 41 ---------~~~~~~~~~-~~~~l~l~D~~g~~-------------~~~~~~~~~~~~ad~~i~v~-d~~~~~s~~~~~~ 96 (167)
T cd01867 41 ---------KIRTIELDG-KKIKLQIWDTAGQE-------------RFRTITTAYYRGAMGIILVY-DITDEKSFENIRN 96 (167)
T ss_pred ---------EEEEEEECC-EEEEEEEEeCCchH-------------HHHHHHHHHhCCCCEEEEEE-ECcCHHHHHhHHH
Confidence 000111111 11368999999932 34556678899998655555 4432222112
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.+..++...+.+.++++|.||+|+.+
T Consensus 97 ~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 97 WMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHHHHHhCCCCCcEEEEEECccccc
Confidence 22333344455789999999999975
No 79
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.10 E-value=1.9e-09 Score=105.79 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=42.7
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhh----CCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA----DPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~----dp~g~rtI~VlT 223 (710)
..+.|||||| .+....+...|+++++++|+++ +....-+-.+...+...+ ...+.++++|.|
T Consensus 63 ~~~~i~Dt~G-------------~~~~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n 128 (180)
T cd04127 63 IHLQLWDTAG-------------QERFRSLTTAFFRDAMGFLLIF-DLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGN 128 (180)
T ss_pred EEEEEEeCCC-------------hHHHHHHHHHHhCCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEe
Confidence 3588999999 2356777888999998655554 444322212222222222 123578999999
Q ss_pred cccccC
Q 005171 224 KLDIMD 229 (710)
Q Consensus 224 K~Dl~~ 229 (710)
|+|+.+
T Consensus 129 K~Dl~~ 134 (180)
T cd04127 129 KADLED 134 (180)
T ss_pred Cccchh
Confidence 999975
No 80
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.10 E-value=1.3e-09 Score=108.55 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=44.4
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hHHHHHHHhhCCCCCcEEEeeccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~~l~la~~~dp~g~rtI~VlTK~ 225 (710)
.+.||||||- ..+..+...|++.++++|++ .+++...+- ..++..+.+..+.+.++++|+||+
T Consensus 51 ~~~i~Dt~G~-------------~~~~~~~~~~~~~ad~~i~v-~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 116 (191)
T cd04112 51 KLQIWDTAGQ-------------ERFRSVTHAYYRDAHALLLL-YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKA 116 (191)
T ss_pred EEEEEeCCCc-------------HHHHHhhHHHccCCCEEEEE-EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcc
Confidence 5899999992 24556667789999855554 454432111 122344555566678999999999
Q ss_pred cccC
Q 005171 226 DIMD 229 (710)
Q Consensus 226 Dl~~ 229 (710)
|+..
T Consensus 117 Dl~~ 120 (191)
T cd04112 117 DMSG 120 (191)
T ss_pred cchh
Confidence 9964
No 81
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.09 E-value=7.7e-10 Score=104.44 Aligned_cols=25 Identities=28% Similarity=0.640 Sum_probs=22.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
.+|++||..+||||||+++|.|.+.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~ 26 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI 26 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC
Confidence 4799999999999999999999864
No 82
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.09 E-value=2.1e-09 Score=108.48 Aligned_cols=116 Identities=16% Similarity=0.304 Sum_probs=72.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
||+|+|+.++|||||++.++...|-+ ... +|-. . . +
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~-~~~-~Ti~---~---------~---~--------------------------- 37 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCE-ACK-SGVG---V---------D---F--------------------------- 37 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCC-cCC-Ccce---e---------E---E---------------------------
Confidence 79999999999999999999877622 111 1100 0 0 0
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccc-hHHHH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN-SDALQ 206 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~-~~~l~ 206 (710)
....+.+.+ ....+.||||+|- +.++.+...|+++++++||++...+.+ +.+ ..++.
T Consensus 38 -------~~~~i~~~~-~~v~l~iwDtaGq-------------e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~ 96 (202)
T cd04120 38 -------KIKTVELRG-KKIRLQIWDTAGQ-------------ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMK 96 (202)
T ss_pred -------EEEEEEECC-EEEEEEEEeCCCc-------------hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHH
Confidence 000111111 1246899999993 356778889999999776665433321 111 12234
Q ss_pred HHHhhCCCCCcEEEeeccccccC
Q 005171 207 IAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 207 la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.++.....+.++|+|.||+|+.+
T Consensus 97 ~i~~~~~~~~piilVgNK~DL~~ 119 (202)
T cd04120 97 MIDKYASEDAELLLVGNKLDCET 119 (202)
T ss_pred HHHHhCCCCCcEEEEEECccccc
Confidence 45555556789999999999864
No 83
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.08 E-value=1.5e-09 Score=104.44 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=70.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+|+|..++|||||+++|++..+.+......+... .
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~--------------~----------------------------- 38 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEF--------------G----------------------------- 38 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeE--------------E-----------------------------
Confidence 599999999999999999998876433221111000 0
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---H
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l 205 (710)
...+.+.+ ....+.|||+||. +.+..+...+++.++++|+++. .....+-..+ +
T Consensus 39 --------~~~~~~~~-~~~~l~l~D~~G~-------------~~~~~~~~~~~~~~~~~i~v~d-~~~~~s~~~~~~~~ 95 (161)
T cd04113 39 --------SKIIRVGG-KRVKLQIWDTAGQ-------------ERFRSVTRSYYRGAAGALLVYD-ITNRTSFEALPTWL 95 (161)
T ss_pred --------EEEEEECC-EEEEEEEEECcch-------------HHHHHhHHHHhcCCCEEEEEEE-CCCHHHHHHHHHHH
Confidence 00111111 1236899999993 2455667788999986665554 4433222222 2
Q ss_pred HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
...+.+...+.++++|+||+|+..
T Consensus 96 ~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 96 SDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred HHHHHhCCCCCeEEEEEEchhcch
Confidence 333444445688999999999975
No 84
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.08 E-value=9.2e-10 Score=105.75 Aligned_cols=115 Identities=20% Similarity=0.239 Sum_probs=67.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+|+|.++||||||++++++..|. ....++++.. +.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~-------------~~---------------------------- 39 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDS-------------YR---------------------------- 39 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhh-------------EE----------------------------
Confidence 47999999999999999999987652 2111111100 00
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~--- 204 (710)
..+.+.+ ....+.||||||.. .++.+...|++++++++|++...+ ..+-.+.
T Consensus 40 ----------~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv~d~~~-~~s~~~~~~~ 94 (163)
T cd04136 40 ----------KQIEVDG-QQCMLEILDTAGTE-------------QFTAMRDLYIKNGQGFVLVYSITS-QSSFNDLQDL 94 (163)
T ss_pred ----------EEEEECC-EEEEEEEEECCCcc-------------ccchHHHHHhhcCCEEEEEEECCC-HHHHHHHHHH
Confidence 0111111 11358899999953 344566778899986666654332 2111122
Q ss_pred HHHHHhh-CCCCCcEEEeeccccccC
Q 005171 205 LQIAGIA-DPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 l~la~~~-dp~g~rtI~VlTK~Dl~~ 229 (710)
+..+... ...+.++|+|.||+|+.+
T Consensus 95 ~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 95 REQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred HHHHHHhcCCCCCCEEEEEECccccc
Confidence 2222222 234689999999999864
No 85
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.08 E-value=1.2e-09 Score=105.01 Aligned_cols=115 Identities=14% Similarity=0.228 Sum_probs=68.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+|+|..++|||||+|+|++..+.+... ++... .+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~-~t~~~-------------~~------------------------------ 37 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYL-PTIGI-------------DY------------------------------ 37 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC-Cccce-------------eE------------------------------
Confidence 69999999999999999999988633111 10000 00
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DAL 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l 205 (710)
....+.+.+ ....+.||||||.. ....+...|++.++++|+++ +.+..-+-. .++
T Consensus 38 -------~~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~-D~~~~~s~~~~~~~~ 95 (168)
T cd04119 38 -------GVKKVSVRN-KEVRVNFFDLSGHP-------------EYLEVRNEFYKDTQGVLLVY-DVTDRQSFEALDSWL 95 (168)
T ss_pred -------EEEEEEECC-eEEEEEEEECCccH-------------HHHHHHHHHhccCCEEEEEE-ECCCHHHHHhHHHHH
Confidence 000111111 12468999999942 34456677889998666655 443221111 122
Q ss_pred HHHH-hhCC----CCCcEEEeeccccccC
Q 005171 206 QIAG-IADP----DGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~-~~dp----~g~rtI~VlTK~Dl~~ 229 (710)
..+. ...+ .+.++++|.||+|+.+
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 96 KEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred HHHHHhccccccCCCceEEEEEEchhccc
Confidence 2222 2332 4688999999999974
No 86
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.07 E-value=1.6e-09 Score=103.99 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=42.9
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhC--CCCCcEEEeeccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIAD--PDGYRTIGIITKL 225 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~d--p~g~rtI~VlTK~ 225 (710)
..+.||||||. +.+..+...|++.++.+++++. +...-.-.....+...+. ..+.++++|+||+
T Consensus 51 ~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~~v~v~d-~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~ 116 (162)
T cd04106 51 VRLMLWDTAGQ-------------EEFDAITKAYYRGAQACILVFS-TTDRESFEAIESWKEKVEAECGDIPMVLVQTKI 116 (162)
T ss_pred EEEEEeeCCch-------------HHHHHhHHHHhcCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECh
Confidence 46899999992 3556677889999986565554 332211112122222221 1368999999999
Q ss_pred cccCc
Q 005171 226 DIMDR 230 (710)
Q Consensus 226 Dl~~~ 230 (710)
|+...
T Consensus 117 Dl~~~ 121 (162)
T cd04106 117 DLLDQ 121 (162)
T ss_pred hcccc
Confidence 99753
No 87
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.07 E-value=4.6e-09 Score=104.01 Aligned_cols=115 Identities=17% Similarity=0.324 Sum_probs=68.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+++|..+||||||++++++..+... .+|..
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~~~---~~t~~--------------------------------------------- 36 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFVNT---VPTKG--------------------------------------------- 36 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCc---CCccc---------------------------------------------
Confidence 699999999999999999998775311 11100
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH---
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL--- 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l--- 205 (710)
+....+.+.+.......+.+|||||. +.++.+...|++.++.+|++ .++...-.-.++.
T Consensus 37 ----~~~~~~~~~~~~~~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v-~D~~~~~~~~~~~~~~ 98 (183)
T cd04152 37 ----FNTEKIKVSLGNSKGITFHFWDVGGQ-------------EKLRPLWKSYTRCTDGIVFV-VDSVDVERMEEAKTEL 98 (183)
T ss_pred ----cceeEEEeeccCCCceEEEEEECCCc-------------HhHHHHHHHHhccCCEEEEE-EECCCHHHHHHHHHHH
Confidence 00000111111112246899999993 24556777889999855554 4544321111111
Q ss_pred -HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 -QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 -~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.+.+.....+.++++|+||+|+.+
T Consensus 99 ~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 99 HKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHhhhhcCCCcEEEEEECcCccc
Confidence 122333335789999999999864
No 88
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.07 E-value=2e-09 Score=103.70 Aligned_cols=68 Identities=18% Similarity=0.290 Sum_probs=43.2
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---HHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l~la~~~dp~g~rtI~VlTK 224 (710)
..+.+|||||. +....+...++..++++|++ .+.+....-.+ ++....... .+.+.++|+||
T Consensus 52 ~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~ii~v-~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK 116 (164)
T cd04101 52 VELFIFDSAGQ-------------ELYSDMVSNYWESPSVFILV-YDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNK 116 (164)
T ss_pred EEEEEEECCCH-------------HHHHHHHHHHhCCCCEEEEE-EECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 46899999992 35567788899999855555 44443221111 122223333 35899999999
Q ss_pred ccccCc
Q 005171 225 LDIMDR 230 (710)
Q Consensus 225 ~Dl~~~ 230 (710)
+|+.+.
T Consensus 117 ~Dl~~~ 122 (164)
T cd04101 117 MDLADK 122 (164)
T ss_pred cccccc
Confidence 998643
No 89
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.06 E-value=2.1e-09 Score=106.94 Aligned_cols=25 Identities=40% Similarity=0.686 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~l 73 (710)
+|+|+|+.++|||||++++++..|.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~ 26 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFL 26 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcC
Confidence 6999999999999999999988763
No 90
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.06 E-value=2.3e-09 Score=127.58 Aligned_cols=121 Identities=23% Similarity=0.315 Sum_probs=73.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
.+|+++|.+|+|||||+|+|+|... .++.-+ +|.-. .
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~------------k----------------------------- 41 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVER------------K----------------------------- 41 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEee------------E-----------------------------
Confidence 5799999999999999999999864 222211 11100 0
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCCeEEEEEecCCCcccchHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~~~ 204 (710)
+..+.. ....+.+|||||+.+......+...++. +...|+. .+| +++.|+|+++...+
T Consensus 42 ------------~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~---i~~~~l~~~~aD-~vI~VvDat~ler~--- 101 (772)
T PRK09554 42 ------------EGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQ---IACHYILSGDAD-LLINVVDASNLERN--- 101 (772)
T ss_pred ------------EEEEEc-CceEEEEEECCCccccccccccccHHHH---HHHHHHhccCCC-EEEEEecCCcchhh---
Confidence 111111 1135899999998765322111223333 3345654 566 56677777653222
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+.+..++...+.|+++|+||+|+.++
T Consensus 102 l~l~~ql~e~giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 102 LYLTLQLLELGIPCIVALNMLDIAEK 127 (772)
T ss_pred HHHHHHHHHcCCCEEEEEEchhhhhc
Confidence 34555666678999999999998743
No 91
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.06 E-value=2e-09 Score=104.23 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=42.8
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---HHHHHHhhCCCCCcEEEeeccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l~la~~~dp~g~rtI~VlTK~ 225 (710)
.+.||||||.. ....+...|++.++++|+++.. +..-+-.. ++...+.....+.+.++|.||+
T Consensus 52 ~~~i~D~~G~~-------------~~~~~~~~~~~~~~~ii~v~d~-~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~ 117 (166)
T cd01869 52 KLQIWDTAGQE-------------RFRTITSSYYRGAHGIIIVYDV-TDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 117 (166)
T ss_pred EEEEEECCCcH-------------hHHHHHHHHhCcCCEEEEEEEC-cCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 58899999932 4556677889999866666544 32211112 2233333433467899999999
Q ss_pred cccC
Q 005171 226 DIMD 229 (710)
Q Consensus 226 Dl~~ 229 (710)
|+..
T Consensus 118 Dl~~ 121 (166)
T cd01869 118 DLTD 121 (166)
T ss_pred hccc
Confidence 9864
No 92
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.06 E-value=1.2e-09 Score=104.73 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=43.0
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHHHHHHh---hCCCCCcEEEe
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DALQIAGI---ADPDGYRTIGI 221 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l~la~~---~dp~g~rtI~V 221 (710)
..+.||||||.. .++.+...|+++++++|++ +++.....-. ..+..+.. +...+.++++|
T Consensus 45 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v-~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 110 (162)
T cd04157 45 LSFTAFDMSGQG-------------KYRGLWEHYYKNIQGIIFV-IDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFF 110 (162)
T ss_pred EEEEEEECCCCH-------------hhHHHHHHHHccCCEEEEE-EeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEE
Confidence 358999999943 4556777889999865554 4544322111 11222211 22346899999
Q ss_pred eccccccCc
Q 005171 222 ITKLDIMDR 230 (710)
Q Consensus 222 lTK~Dl~~~ 230 (710)
+||+|+.+.
T Consensus 111 ~NK~Dl~~~ 119 (162)
T cd04157 111 ANKMDLPDA 119 (162)
T ss_pred EeCccccCC
Confidence 999999753
No 93
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.06 E-value=1.8e-09 Score=103.76 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=42.8
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHh---hCCCCCcEEEeeccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGI---ADPDGYRTIGIITKL 225 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~---~dp~g~rtI~VlTK~ 225 (710)
.+.+||+||. ..+..+...+++.++.+|+++.. ....+-..+..+... ....+.++++|+||+
T Consensus 50 ~~~l~D~~G~-------------~~~~~~~~~~~~~~d~~ilv~d~-~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~ 115 (164)
T smart00175 50 KLQIWDTAGQ-------------ERFRSITSSYYRGAVGALLVYDI-TNRESFENLKNWLKELREYADPNVVIMLVGNKS 115 (164)
T ss_pred EEEEEECCCh-------------HHHHHHHHHHhCCCCEEEEEEEC-CCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEch
Confidence 5889999993 24456777889999866666544 332222222222222 222468999999999
Q ss_pred cccC
Q 005171 226 DIMD 229 (710)
Q Consensus 226 Dl~~ 229 (710)
|+..
T Consensus 116 D~~~ 119 (164)
T smart00175 116 DLED 119 (164)
T ss_pred hccc
Confidence 9864
No 94
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.05 E-value=2.4e-09 Score=102.93 Aligned_cols=115 Identities=15% Similarity=0.211 Sum_probs=68.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+|+|.+++|||||+|+|++..+.+.. .+++......
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~----------------------------------------- 40 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQ-ESTIGAAFLT----------------------------------------- 40 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceeEEE-----------------------------------------
Confidence 6999999999999999999999874411 1111100000
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---H
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l 205 (710)
..+.+.+ ....+.|||+||- +.+..+...|++..+++|+++...+.. +-..+ +
T Consensus 41 ---------~~v~~~~-~~~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~ 96 (163)
T cd01860 41 ---------QTVNLDD-TTVKFEIWDTAGQ-------------ERYRSLAPMYYRGAAAAIVVYDITSEE-SFEKAKSWV 96 (163)
T ss_pred ---------EEEEECC-EEEEEEEEeCCch-------------HHHHHHHHHHhccCCEEEEEEECcCHH-HHHHHHHHH
Confidence 0011110 1135889999993 244556667889898666665443321 11122 2
Q ss_pred HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..++.......+.++|+||+|+.+
T Consensus 97 ~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 97 KELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred HHHHHhCCCCCeEEEEEECccccc
Confidence 222333334577999999999874
No 95
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.04 E-value=4.1e-09 Score=102.37 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=42.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH----HHHHHHhhCCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD----ALQIAGIADPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~----~l~la~~~dp~g~rtI~VlT 223 (710)
..+.+|||||... .+.....++..++.++++ .+.+...+-.. +...++...+ +.++++|+|
T Consensus 47 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~ilv-~d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~n 111 (166)
T cd01893 47 VPTTIVDTSSRPQ-------------DRANLAAEIRKANVICLV-YSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGN 111 (166)
T ss_pred EEEEEEeCCCchh-------------hhHHHhhhcccCCEEEEE-EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEE
Confidence 3689999999542 233455677888865554 45543322222 2344455444 689999999
Q ss_pred cccccCc
Q 005171 224 KLDIMDR 230 (710)
Q Consensus 224 K~Dl~~~ 230 (710)
|+|+.+.
T Consensus 112 K~Dl~~~ 118 (166)
T cd01893 112 KSDLRDG 118 (166)
T ss_pred chhcccc
Confidence 9999754
No 96
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.04 E-value=3.1e-09 Score=105.84 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=42.0
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHHHHHHhhC---CCCCcEEEee
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DALQIAGIAD---PDGYRTIGII 222 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l~la~~~d---p~g~rtI~Vl 222 (710)
.+.||||||.. .++.+...|++.++++|+++. .+...+-. .++..+..+. +...++|+|.
T Consensus 48 ~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~ilv~d-~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvg 113 (190)
T cd04144 48 MLEVLDTAGQE-------------EYTALRDQWIREGEGFILVYS-ITSRSTFERVERFREQIQRVKDESAADVPIMIVG 113 (190)
T ss_pred EEEEEECCCch-------------hhHHHHHHHHHhCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 58999999942 445566779999986665554 33221111 2222233332 2467899999
Q ss_pred ccccccC
Q 005171 223 TKLDIMD 229 (710)
Q Consensus 223 TK~Dl~~ 229 (710)
||+|+.+
T Consensus 114 NK~Dl~~ 120 (190)
T cd04144 114 NKCDKVY 120 (190)
T ss_pred EChhccc
Confidence 9999964
No 97
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.04 E-value=1.9e-09 Score=103.70 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=42.5
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---H-HHHHhhCCCCCcEEEeecc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L-QIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l-~la~~~dp~g~rtI~VlTK 224 (710)
.+.+|||||.. .+..+...|++..+++|+++...+ ..+-... . .+.+.....+.++++|+||
T Consensus 51 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK 116 (164)
T cd04145 51 ILDILDTAGQE-------------EFSAMREQYMRTGEGFLLVFSVTD-RGSFEEVDKFHTQILRVKDRDEFPMILVGNK 116 (164)
T ss_pred EEEEEECCCCc-------------chhHHHHHHHhhCCEEEEEEECCC-HHHHHHHHHHHHHHHHHhCCCCCCEEEEeeC
Confidence 58899999943 344566788899987666654333 2111111 1 2223334456899999999
Q ss_pred ccccC
Q 005171 225 LDIMD 229 (710)
Q Consensus 225 ~Dl~~ 229 (710)
+|+.+
T Consensus 117 ~Dl~~ 121 (164)
T cd04145 117 ADLEH 121 (164)
T ss_pred ccccc
Confidence 99864
No 98
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.03 E-value=6.1e-09 Score=104.65 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=42.3
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhh-------CCCCCcEEE
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA-------DPDGYRTIG 220 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~-------dp~g~rtI~ 220 (710)
..+.||||||- +.++.+...|+++++++|+++. .+...+-..+..+...+ .....++|+
T Consensus 50 ~~l~l~Dt~G~-------------~~~~~~~~~~~~~a~~~ilv~D-~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piil 115 (201)
T cd04107 50 VRLQLWDIAGQ-------------ERFGGMTRVYYRGAVGAIIVFD-VTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLL 115 (201)
T ss_pred EEEEEEECCCc-------------hhhhhhHHHHhCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEE
Confidence 36899999994 2456677889999996666654 33221111111111111 124578999
Q ss_pred eeccccccC
Q 005171 221 IITKLDIMD 229 (710)
Q Consensus 221 VlTK~Dl~~ 229 (710)
|.||+|+.+
T Consensus 116 v~NK~Dl~~ 124 (201)
T cd04107 116 LANKCDLKK 124 (201)
T ss_pred EEECCCccc
Confidence 999999974
No 99
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.03 E-value=1.8e-09 Score=104.08 Aligned_cols=114 Identities=19% Similarity=0.282 Sum_probs=66.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+|+|..|||||||+|++++..+... ..+++.. .+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~-~~~t~~~-------------~~~~---------------------------- 39 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDD-YDPTIED-------------SYRK---------------------------- 39 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-cCCchhh-------------hEEE----------------------------
Confidence 699999999999999999998876322 1111110 0000
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---H
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l 205 (710)
.+.+. .....+.+|||||.. .+..+...|++..+++|+++ ++...-+-... .
T Consensus 40 ----------~~~~~-~~~~~l~i~Dt~g~~-------------~~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~~ 94 (164)
T smart00173 40 ----------QIEID-GEVCLLDILDTAGQE-------------EFSAMRDQYMRTGEGFLLVY-SITDRQSFEEIKKFR 94 (164)
T ss_pred ----------EEEEC-CEEEEEEEEECCCcc-------------cchHHHHHHHhhCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 01111 112358899999954 23455667888888655554 44332111111 1
Q ss_pred H-HHHhhCCCCCcEEEeeccccccC
Q 005171 206 Q-IAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~-la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
. +.+.......++++|.||+|+.+
T Consensus 95 ~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 95 EQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred HHHHHhcCCCCCCEEEEEECccccc
Confidence 2 22223334678999999999865
No 100
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.03 E-value=4.2e-09 Score=99.80 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=42.4
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH----HHHhhCCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ----IAGIADPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~----la~~~dp~g~rtI~VlT 223 (710)
..+.+|||||.. .++.+...|+..+++++ +|.++.....-..... +.+.....+.++++|+|
T Consensus 44 ~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n 109 (159)
T cd04159 44 VTLKVWDLGGQP-------------RFRSMWERYCRGVNAIV-YVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGN 109 (159)
T ss_pred EEEEEEECCCCH-------------hHHHHHHHHHhcCCEEE-EEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEe
Confidence 358999999942 45567778899998555 4555543221111111 11211224679999999
Q ss_pred cccccCc
Q 005171 224 KLDIMDR 230 (710)
Q Consensus 224 K~Dl~~~ 230 (710)
|.|+.+.
T Consensus 110 K~D~~~~ 116 (159)
T cd04159 110 KNDLPGA 116 (159)
T ss_pred CccccCC
Confidence 9998754
No 101
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.03 E-value=6.6e-09 Score=100.62 Aligned_cols=117 Identities=18% Similarity=0.270 Sum_probs=70.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccc-cceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT-RRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~T-r~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
.+++|+|+|.+++|||||++++++..+.|. .+++. .....
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~-------------------------------------- 46 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPG-QGATIGVDFMI-------------------------------------- 46 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeEEEE--------------------------------------
Confidence 358899999999999999999997765332 21111 00000
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN--- 201 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~--- 201 (710)
..+.+.+ ....+.+||+||.. ....+...|+..++++|+++. .....+-
T Consensus 47 -------------~~~~~~~-~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~ 98 (169)
T cd04114 47 -------------KTVEIKG-EKIKLQIWDTAGQE-------------RFRSITQSYYRSANALILTYD-ITCEESFRCL 98 (169)
T ss_pred -------------EEEEECC-EEEEEEEEECCCcH-------------HHHHHHHHHhcCCCEEEEEEE-CcCHHHHHHH
Confidence 0111111 11357899999942 344555678999986555554 3322111
Q ss_pred hHHHHHHHhhCCCCCcEEEeeccccccC
Q 005171 202 SDALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 202 ~~~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..++..++.+...+.+.++|.||+|+.+
T Consensus 99 ~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 99 PEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred HHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 1223334555555788999999999864
No 102
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.02 E-value=3.6e-09 Score=101.10 Aligned_cols=115 Identities=16% Similarity=0.217 Sum_probs=67.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+|+|.+++|||||+|+|++..+.+.... ++.......
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~---------------------------------------- 40 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHES-TTQASFFQK---------------------------------------- 40 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCC-ccceeEEEE----------------------------------------
Confidence 589999999999999999999876332211 111110000
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---H
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l 205 (710)
.+.+.+ ....+.+||+||- .....+...|+.+++++++++ +....-.-... +
T Consensus 41 ----------~~~~~~-~~~~~~~~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~~ 95 (162)
T cd04123 41 ----------TVNIGG-KRIDLAIWDTAGQ-------------ERYHALGPIYYRDADGAILVY-DITDADSFQKVKKWI 95 (162)
T ss_pred ----------EEEECC-EEEEEEEEECCch-------------HHHHHhhHHHhccCCEEEEEE-ECCCHHHHHHHHHHH
Confidence 001111 1135899999993 234556667788888555554 44332221221 2
Q ss_pred HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..++...+.+.++++|+||+|+..
T Consensus 96 ~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 96 KELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred HHHHHhCCCCCeEEEEEECccccc
Confidence 223344444689999999999874
No 103
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.02 E-value=2.4e-09 Score=102.39 Aligned_cols=116 Identities=18% Similarity=0.250 Sum_probs=69.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+|+|.+++|||||+|++++..|... ..+++.. .+.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~-~~~t~~~-------------~~~---------------------------- 39 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDE-YDPTIED-------------SYR---------------------------- 39 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCC-cCCcchh-------------eEE----------------------------
Confidence 4699999999999999999999876322 1111100 000
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccch-HHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LANS-DAL 205 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~~-~~l 205 (710)
..+.+.+ ....+.+|||||.. .++.+...|++.++++++++...+.. +... ..+
T Consensus 40 ----------~~~~~~~-~~~~~~i~Dt~G~~-------------~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~ 95 (162)
T cd04138 40 ----------KQVVIDG-ETCLLDILDTAGQE-------------EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYR 95 (162)
T ss_pred ----------EEEEECC-EEEEEEEEECCCCc-------------chHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 0111111 11347889999942 45667778999998766665433211 1111 111
Q ss_pred -HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 -QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 -~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.+.+.....+.++++|+||+|+..
T Consensus 96 ~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 96 EQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHHHHhcCCCCCCEEEEEECccccc
Confidence 223333345789999999999975
No 104
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.02 E-value=1.2e-09 Score=106.09 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEcCCCCcHHHHHHHHhCCCC
Q 005171 52 VVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 52 VVG~qssGKSSLLnaL~G~~~ 72 (710)
++|.+|||||||+|+|+|..+
T Consensus 1 iiG~~~~GKStll~~l~~~~~ 21 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP 21 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc
Confidence 589999999999999999875
No 105
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=2.1e-09 Score=117.49 Aligned_cols=128 Identities=29% Similarity=0.294 Sum_probs=82.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
.-++||++|.+|+|||||||+|+..+.-=+++- .+++++
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv-----------~GTTRD------------------------------ 305 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPV-----------PGTTRD------------------------------ 305 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCC-----------CCcchh------------------------------
Confidence 347999999999999999999999875322222 133332
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
.|+..+. ++...+.|+||.|+-+.. + ..++..=-+..++-+..+| +|++|++|+.....++ +
T Consensus 306 -----------aiea~v~-~~G~~v~L~DTAGiRe~~--~--~~iE~~gI~rA~k~~~~ad-vi~~vvda~~~~t~sd-~ 367 (531)
T KOG1191|consen 306 -----------AIEAQVT-VNGVPVRLSDTAGIREES--N--DGIEALGIERARKRIERAD-VILLVVDAEESDTESD-L 367 (531)
T ss_pred -----------hheeEee-cCCeEEEEEecccccccc--C--ChhHHHhHHHHHHHHhhcC-EEEEEecccccccccc-h
Confidence 2222222 334579999999998721 1 1233333344566778887 8888888865555555 4
Q ss_pred HHHHhhCCC------------CCcEEEeeccccccCccc
Q 005171 206 QIAGIADPD------------GYRTIGIITKLDIMDRGT 232 (710)
Q Consensus 206 ~la~~~dp~------------g~rtI~VlTK~Dl~~~~~ 232 (710)
.+++.+... ..|.|+|.||.|+..+..
T Consensus 368 ~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~ 406 (531)
T KOG1191|consen 368 KIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP 406 (531)
T ss_pred HHHHHHHHhccceEEEeccccccceEEEechhhccCccc
Confidence 444433322 367888899999987643
No 106
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.01 E-value=8.4e-09 Score=103.47 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=41.9
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---HH-HHHhhCCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQ-IAGIADPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l~-la~~~dp~g~rtI~VlT 223 (710)
..+.||||||.. .+..+...|+..++++|+++ ++.....-.+. +. +.+.....+.++|+|+|
T Consensus 47 ~~l~i~D~~G~~-------------~~~~~~~~~~~~ad~vilv~-d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~N 112 (198)
T cd04147 47 LTLDILDTSGSY-------------SFPAMRKLSIQNSDAFALVY-AVDDPESFEEVERLREEILEVKEDKFVPIVVVGN 112 (198)
T ss_pred EEEEEEECCCch-------------hhhHHHHHHhhcCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 368899999953 23345556888998655554 44432222222 12 22223335789999999
Q ss_pred cccccC
Q 005171 224 KLDIMD 229 (710)
Q Consensus 224 K~Dl~~ 229 (710)
|+|+..
T Consensus 113 K~Dl~~ 118 (198)
T cd04147 113 KADSLE 118 (198)
T ss_pred cccccc
Confidence 999865
No 107
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.01 E-value=7.6e-09 Score=101.25 Aligned_cols=115 Identities=20% Similarity=0.256 Sum_probs=68.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|++||+.++|||||++++++..|. ....+++... +
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~-------------~------------------------------ 37 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD-KNYKATIGVD-------------F------------------------------ 37 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeE-------------E------------------------------
Confidence 5999999999999999999998762 2221111100 0
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIA 208 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la 208 (710)
...++.+.+ ....+.||||||. +....+...|++.++++| +|.++...-+-.....+.
T Consensus 38 -------~~~~~~~~~-~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~ad~~i-lv~d~~~~~s~~~~~~~~ 95 (170)
T cd04108 38 -------EMERFEILG-VPFSLQLWDTAGQ-------------ERFKCIASTYYRGAQAII-IVFDLTDVASLEHTRQWL 95 (170)
T ss_pred -------EEEEEEECC-EEEEEEEEeCCCh-------------HHHHhhHHHHhcCCCEEE-EEEECcCHHHHHHHHHHH
Confidence 001112211 1236899999994 345667778899998544 444554321111112222
Q ss_pred ----HhhCCCCCcEEEeeccccccC
Q 005171 209 ----GIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 209 ----~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
+...+...++|+|.||.|+.+
T Consensus 96 ~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 96 EDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred HHHHHhcCCCCCeEEEEEEChhcCc
Confidence 233344456899999999864
No 108
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.01 E-value=7.3e-09 Score=104.04 Aligned_cols=116 Identities=21% Similarity=0.221 Sum_probs=68.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|||+.++|||||++.+++..|.+ .. .+|-. +
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~-~~t~~---~--------------------------------------- 41 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SY-ITTIG---V--------------------------------------- 41 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-Cc-Ccccc---c---------------------------------------
Confidence 4689999999999999999999887521 11 11100 0
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH--
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (710)
+.....+.+.+ ....+.||||||- +.++.+...|+++++++|+++. +....+-.+.
T Consensus 42 -------~~~~~~~~~~~-~~~~l~l~D~~G~-------------~~~~~~~~~~~~~a~~iilv~D-~~~~~s~~~~~~ 99 (199)
T cd04110 42 -------DFKIRTVEING-ERVKLQIWDTAGQ-------------ERFRTITSTYYRGTHGVIVVYD-VTNGESFVNVKR 99 (199)
T ss_pred -------eeEEEEEEECC-EEEEEEEEeCCCc-------------hhHHHHHHHHhCCCcEEEEEEE-CCCHHHHHHHHH
Confidence 00001111111 1135889999993 2456677889999986665554 4332221222
Q ss_pred -HHHHHhhCCCCCcEEEeeccccccC
Q 005171 205 -LQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 -l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
+...+... ...+.++|.||+|+.+
T Consensus 100 ~~~~i~~~~-~~~piivVgNK~Dl~~ 124 (199)
T cd04110 100 WLQEIEQNC-DDVCKVLVGNKNDDPE 124 (199)
T ss_pred HHHHHHHhC-CCCCEEEEEECccccc
Confidence 22222222 2478899999999864
No 109
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.01 E-value=1.2e-08 Score=103.68 Aligned_cols=117 Identities=20% Similarity=0.237 Sum_probs=68.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+|+|++++|||||++.|++..+.+... +++.. .+.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~-------------d~~---------------------------- 40 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGV-------------DFF---------------------------- 40 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ceece-------------EEE----------------------------
Confidence 469999999999999999999987633211 11100 000
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~--- 204 (710)
...+.+.......+.||||||. +.+..+...|+++++++|+++. .+..-+-.++
T Consensus 41 ---------~~~i~~~~~~~~~l~i~Dt~G~-------------~~~~~~~~~~~~~~d~iilv~D-~~~~~Sf~~l~~~ 97 (211)
T cd04111 41 ---------SRLIEIEPGVRIKLQLWDTAGQ-------------ERFRSITRSYYRNSVGVLLVFD-ITNRESFEHVHDW 97 (211)
T ss_pred ---------EEEEEECCCCEEEEEEEeCCcc-------------hhHHHHHHHHhcCCcEEEEEEE-CCCHHHHHHHHHH
Confidence 0011111111135899999993 2455677789999986655554 4332111122
Q ss_pred HHHH-HhhCCCCCcEEEeeccccccC
Q 005171 205 LQIA-GIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 l~la-~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
+..+ +...+...+.++|.||+|+.+
T Consensus 98 ~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 98 LEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred HHHHHHhcCCCCCeEEEEEEcccccc
Confidence 2222 233344566788999999975
No 110
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.01 E-value=3.4e-09 Score=107.83 Aligned_cols=116 Identities=13% Similarity=0.127 Sum_probs=68.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+|||+.++|||||++.|++..| +....++... .
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~~----d---------------------------------------- 36 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIGL----D---------------------------------------- 36 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeE----E----------------------------------------
Confidence 589999999999999999998875 2222111100 0
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---HH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---AL 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l 205 (710)
.....+.+.+.....+.||||||. +....+...|++.++++|+++. ....-+-.. ++
T Consensus 37 ------~~~~~i~~~~~~~~~~~i~Dt~G~-------------~~~~~l~~~~~~~ad~iilV~D-~t~~~s~~~~~~w~ 96 (215)
T cd04109 37 ------FFSKRVTLPGNLNVTLQVWDIGGQ-------------SIGGKMLDKYIYGAHAVFLVYD-VTNSQSFENLEDWY 96 (215)
T ss_pred ------EEEEEEEeCCCCEEEEEEEECCCc-------------HHHHHHHHHHhhcCCEEEEEEE-CCCHHHHHHHHHHH
Confidence 000112221111246899999993 2456677889999996666554 432211111 22
Q ss_pred HHHHhhCC---CCCcEEEeeccccccC
Q 005171 206 QIAGIADP---DGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp---~g~rtI~VlTK~Dl~~ 229 (710)
..++.... ...++++|.||+|+.+
T Consensus 97 ~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 97 SMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred HHHHHhccccCCCceEEEEEECccccc
Confidence 33333322 2356889999999964
No 111
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.01 E-value=7.3e-09 Score=100.62 Aligned_cols=117 Identities=21% Similarity=0.318 Sum_probs=68.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
+-+|+|+|..++|||||++++++..+.+......+.. +.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~--------------~~--------------------------- 43 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE--------------FL--------------------------- 43 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeE--------------EE---------------------------
Confidence 4579999999999999999999887633221110000 00
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccch-HH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LANS-DA 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~~-~~ 204 (710)
...+.+. .....+.||||||- +.++.+...|++.++++|+++...+.+ +... .+
T Consensus 44 ----------~~~~~~~-~~~~~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 99 (170)
T cd04116 44 ----------NKDLEVD-GHFVTLQIWDTAGQ-------------ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNW 99 (170)
T ss_pred ----------EEEEEEC-CeEEEEEEEeCCCh-------------HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHH
Confidence 0011111 11236889999992 356677788999998766554332221 1111 11
Q ss_pred HH-HHHhh---CCCCCcEEEeecccccc
Q 005171 205 LQ-IAGIA---DPDGYRTIGIITKLDIM 228 (710)
Q Consensus 205 l~-la~~~---dp~g~rtI~VlTK~Dl~ 228 (710)
.. +.+.. .+.+.++++|.||+|+.
T Consensus 100 ~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 100 KKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHHHHHhcccccCCCCcEEEEEECcccc
Confidence 11 22222 13467899999999986
No 112
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.00 E-value=3.8e-09 Score=101.27 Aligned_cols=115 Identities=17% Similarity=0.287 Sum_probs=68.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+++|.+++|||||+++|++..+. .+..+++... +...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~-------------~~~~--------------------------- 40 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADS-------------YRKK--------------------------- 40 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhh-------------EEEE---------------------------
Confidence 6999999999999999999988763 2222211110 0000
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-cc-chHHH-
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LA-NSDAL- 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~-~~~~l- 205 (710)
+.+ ......+.+|||||.. .+..+...+++..+++|+++...+.. +. ....+
T Consensus 41 -----------~~~-~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 95 (164)
T cd04139 41 -----------VVL-DGEDVQLNILDTAGQE-------------DYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFRE 95 (164)
T ss_pred -----------EEE-CCEEEEEEEEECCChh-------------hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHH
Confidence 000 0012358899999943 34456667889888777666432211 11 11222
Q ss_pred HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.+.+.......+.++|+||+|+.+
T Consensus 96 ~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 96 QILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred HHHHhcCCCCCCEEEEEEcccccc
Confidence 233333345789999999999975
No 113
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.00 E-value=1.4e-09 Score=108.35 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=46.3
Q ss_pred CCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecc
Q 005171 145 PHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 145 p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK 224 (710)
.....++|+||||.. .+...+...+..+|+ +++|+++..+...+. ...++.+...+.+.|+|+||
T Consensus 67 ~~~~~i~~iDtPG~~-------------~f~~~~~~~~~~~D~-ailvVda~~g~~~~~-~~~l~~~~~~~~p~ivvlNK 131 (188)
T PF00009_consen 67 ENNRKITLIDTPGHE-------------DFIKEMIRGLRQADI-AILVVDANDGIQPQT-EEHLKILRELGIPIIVVLNK 131 (188)
T ss_dssp ESSEEEEEEEESSSH-------------HHHHHHHHHHTTSSE-EEEEEETTTBSTHHH-HHHHHHHHHTT-SEEEEEET
T ss_pred ccccceeeccccccc-------------ceeecccceeccccc-ceeeeeccccccccc-ccccccccccccceEEeeee
Confidence 444679999999943 233344456888884 556667766655433 44555555556889999999
Q ss_pred cccc
Q 005171 225 LDIM 228 (710)
Q Consensus 225 ~Dl~ 228 (710)
+|+.
T Consensus 132 ~D~~ 135 (188)
T PF00009_consen 132 MDLI 135 (188)
T ss_dssp CTSS
T ss_pred ccch
Confidence 9998
No 114
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.00 E-value=8.7e-09 Score=101.89 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
.|+|+|..++|||||++++++..+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~ 25 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF 25 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC
Confidence 699999999999999999999875
No 115
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.00 E-value=3.2e-09 Score=102.56 Aligned_cols=115 Identities=19% Similarity=0.247 Sum_probs=68.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
..|+|+|..|+|||||+++++...+.+. ..+++.....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~-~~~t~~~~~~----------------------------------------- 39 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEK-YDPTIEDSYR----------------------------------------- 39 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcc-cCCcchheEE-----------------------------------------
Confidence 3699999999999999999987654221 1111111100
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~--- 204 (710)
..+.+.+ ....+.||||||.. .++.+...|++..+++|+++...+ ..+-.+.
T Consensus 40 ----------~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~d~~~-~~s~~~~~~~ 94 (164)
T cd04175 40 ----------KQVEVDG-QQCMLEILDTAGTE-------------QFTAMRDLYMKNGQGFVLVYSITA-QSTFNDLQDL 94 (164)
T ss_pred ----------EEEEECC-EEEEEEEEECCCcc-------------cchhHHHHHHhhCCEEEEEEECCC-HHHHHHHHHH
Confidence 0111211 12457899999943 345566678999997776654322 2111111
Q ss_pred HH-HHHhhCCCCCcEEEeeccccccC
Q 005171 205 LQ-IAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 l~-la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
+. +.+.....+.++++|.||+|+.+
T Consensus 95 ~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 95 REQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred HHHHHHhcCCCCCCEEEEEECCcchh
Confidence 22 22222345689999999999964
No 116
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.99 E-value=5.5e-09 Score=102.46 Aligned_cols=115 Identities=16% Similarity=0.267 Sum_probs=70.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
.|+|+|+.++|||||++.+++..| |....+++.. .+.
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f-~~~~~~t~~~-------------~~~----------------------------- 40 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSF-PDYHDPTIED-------------AYK----------------------------- 40 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCcCCcccc-------------eEE-----------------------------
Confidence 699999999999999999998876 2211111100 000
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccc-hHHHH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN-SDALQ 206 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~-~~~l~ 206 (710)
..+.+.+ ....+.||||||.. .++.+...|+..++++|+++...+.. +.+ .+...
T Consensus 41 ---------~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~ 97 (172)
T cd04141 41 ---------QQARIDN-EPALLDILDTAGQA-------------EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKK 97 (172)
T ss_pred ---------EEEEECC-EEEEEEEEeCCCch-------------hhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHH
Confidence 0111111 11358999999942 45677788999998777665543322 111 11223
Q ss_pred HHHhh-CCCCCcEEEeeccccccC
Q 005171 207 IAGIA-DPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 207 la~~~-dp~g~rtI~VlTK~Dl~~ 229 (710)
.+... ...+.|+++|.||+|+.+
T Consensus 98 ~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 98 LITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred HHHHhcCCCCCCEEEEEEChhhhh
Confidence 34443 234689999999999864
No 117
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.98 E-value=2e-09 Score=122.49 Aligned_cols=119 Identities=24% Similarity=0.323 Sum_probs=77.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+++|.+|+|||||+|+|+|... -+|. .| +.+-...-+.+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q-~VgN-----wp------GvTVEkkeg~~-------------------------- 45 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ-KVGN-----WP------GVTVEKKEGKL-------------------------- 45 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc-eecC-----CC------CeeEEEEEEEE--------------------------
Confidence 4599999999999999999999863 2222 11 11111111111
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcC-CCeEEEEEecCCCcccchHHHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQ-PSCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~-~~~iIL~V~~a~~d~~~~~~l~ 206 (710)
+.. ...+++|||||+.+-.... .+ +..+++|+.+ .-++|+.|+||.+--.+ +.
T Consensus 46 -------------~~~---~~~i~ivDLPG~YSL~~~S----~D---E~Var~~ll~~~~D~ivnVvDAtnLeRn---Ly 99 (653)
T COG0370 46 -------------KYK---GHEIEIVDLPGTYSLTAYS----ED---EKVARDFLLEGKPDLIVNVVDATNLERN---LY 99 (653)
T ss_pred -------------Eec---CceEEEEeCCCcCCCCCCC----ch---HHHHHHHHhcCCCCEEEEEcccchHHHH---HH
Confidence 111 1248999999997764321 12 2445677773 32588888887754433 56
Q ss_pred HHHhhCCCCCcEEEeeccccccCc
Q 005171 207 IAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 207 la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+.-++-..|.++|+++|++|...+
T Consensus 100 ltlQLlE~g~p~ilaLNm~D~A~~ 123 (653)
T COG0370 100 LTLQLLELGIPMILALNMIDEAKK 123 (653)
T ss_pred HHHHHHHcCCCeEEEeccHhhHHh
Confidence 666676778999999999999754
No 118
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.98 E-value=8.5e-09 Score=97.17 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
+|++||++++|||||+|+|+|..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 699999999999999999998754
No 119
>PTZ00369 Ras-like protein; Provisional
Probab=98.98 E-value=6.9e-09 Score=103.27 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
-..|+|+|..|+|||||++++++..|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~ 30 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF 30 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36799999999999999999998775
No 120
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.97 E-value=7.8e-09 Score=117.60 Aligned_cols=125 Identities=16% Similarity=0.242 Sum_probs=80.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCC-CccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~-g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
.+|+|||.+|+||||++|+|+|...+.++. ..+|.....+..
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~------------------------------------- 161 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEG------------------------------------- 161 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEE-------------------------------------
Confidence 379999999999999999999998766543 234433321110
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCCeEEEEEecCCCcc---cc
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDL---AN 201 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~---~~ 201 (710)
.+ ....+.||||||+.+.... ....+.+...+..|+. .++ +||+|...+... ..
T Consensus 162 --------------~i---dG~~L~VIDTPGL~dt~~d---q~~neeILk~Ik~~Lsk~gpD-VVLlV~RLd~~~~D~eD 220 (763)
T TIGR00993 162 --------------LV---QGVKIRVIDTPGLKSSASD---QSKNEKILSSVKKFIKKNPPD-IVLYVDRLDMQTRDSND 220 (763)
T ss_pred --------------EE---CCceEEEEECCCCCccccc---hHHHHHHHHHHHHHHhcCCCC-EEEEEEeCCCccccHHH
Confidence 00 0135899999999876322 1223455555666776 355 777776544222 22
Q ss_pred hHHHHHHHhhCCC--CCcEEEeeccccccCc
Q 005171 202 SDALQIAGIADPD--GYRTIGIITKLDIMDR 230 (710)
Q Consensus 202 ~~~l~la~~~dp~--g~rtI~VlTK~Dl~~~ 230 (710)
..+++.++.+-+. -.++|+|+|+.|..++
T Consensus 221 ~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 221 LPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 2345555555443 4789999999999964
No 121
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.97 E-value=8.2e-09 Score=99.13 Aligned_cols=115 Identities=19% Similarity=0.234 Sum_probs=67.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+|+|.+++|||||+|+|++..+.+......+..
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--------------------------------------------- 36 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVD--------------------------------------------- 36 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccce---------------------------------------------
Confidence 58999999999999999999987532211110000
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---H
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l 205 (710)
.....+.+ ......+.||||||.. ....+...+++.++++|+++ +.....+-... +
T Consensus 37 ------~~~~~~~~-~~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~ 95 (161)
T cd01863 37 ------FKVKTLTV-DGKKVKLAIWDTAGQE-------------RFRTLTSSYYRGAQGVILVY-DVTRRDTFTNLETWL 95 (161)
T ss_pred ------EEEEEEEE-CCEEEEEEEEECCCch-------------hhhhhhHHHhCCCCEEEEEE-ECCCHHHHHhHHHHH
Confidence 00001111 1112368999999942 33455567888888655554 44432222222 2
Q ss_pred HHH-HhhCCCCCcEEEeeccccccC
Q 005171 206 QIA-GIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la-~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..+ +.....+.+.++|+||+|+..
T Consensus 96 ~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 96 NELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred HHHHHhCCCCCCcEEEEEECCcccc
Confidence 222 223445788999999999973
No 122
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.97 E-value=6.5e-09 Score=101.59 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=68.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|+.++|||||++++++..|-|....+++... +.
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~-------------~~--------------------------- 43 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPR-------------YA--------------------------- 43 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcc-------------eE---------------------------
Confidence 35799999999999999999999886312221111100 00
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (710)
.-.+.+.+ ....+.++|++|-.. ...+...|+.+++.+| +|.++.....-.....
T Consensus 44 ----------~~~~~~~~-~~~~l~~~d~~g~~~-------------~~~~~~~~~~~~d~~l-lv~d~~~~~s~~~~~~ 98 (169)
T cd01892 44 ----------VNTVEVYG-QEKYLILREVGEDEV-------------AILLNDAELAACDVAC-LVYDSSDPKSFSYCAE 98 (169)
T ss_pred ----------EEEEEECC-eEEEEEEEecCCccc-------------ccccchhhhhcCCEEE-EEEeCCCHHHHHHHHH
Confidence 00011111 113588999999432 2334556788888555 4555543322122224
Q ss_pred HHHhhC-CCCCcEEEeeccccccC
Q 005171 207 IAGIAD-PDGYRTIGIITKLDIMD 229 (710)
Q Consensus 207 la~~~d-p~g~rtI~VlTK~Dl~~ 229 (710)
+.+.+. ..+.++++|+||+|+.+
T Consensus 99 ~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 99 VYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred HHHHhccCCCCeEEEEEEcccccc
Confidence 444442 23689999999999864
No 123
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.97 E-value=7.4e-09 Score=99.34 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=41.6
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHh----hCCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGI----ADPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~----~dp~g~rtI~VlT 223 (710)
..+.++||||.. .+..+...|+..++.+| +|.++.....-..+.....+ ....+.++++|+|
T Consensus 44 ~~l~i~D~~G~~-------------~~~~~~~~~~~~~~~iv-~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 109 (160)
T cd04156 44 LSLTVWDVGGQE-------------KMRTVWKCYLENTDGLV-YVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLAN 109 (160)
T ss_pred eEEEEEECCCCH-------------hHHHHHHHHhccCCEEE-EEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEE
Confidence 368999999943 34455667888898555 55555433211222221221 1124689999999
Q ss_pred cccccC
Q 005171 224 KLDIMD 229 (710)
Q Consensus 224 K~Dl~~ 229 (710)
|+|+.+
T Consensus 110 K~Dl~~ 115 (160)
T cd04156 110 KQDLPG 115 (160)
T ss_pred Cccccc
Confidence 999854
No 124
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.97 E-value=4.5e-09 Score=102.41 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=40.5
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH----HHHHHHhhCCCCCcEEEeecc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD----ALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~----~l~la~~~dp~g~rtI~VlTK 224 (710)
.+.+|||||.. ....+...+++.++++|+++. .+..-+-.. ++..++...+ +.++|+|.||
T Consensus 47 ~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~d-~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK 111 (174)
T smart00174 47 ELGLWDTAGQE-------------DYDRLRPLSYPDTDVFLICFS-VDSPASFENVKEKWYPEVKHFCP-NTPIILVGTK 111 (174)
T ss_pred EEEEEECCCCc-------------ccchhchhhcCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecC
Confidence 58999999953 223344557888886555554 332211111 1222233333 6899999999
Q ss_pred ccccCc
Q 005171 225 LDIMDR 230 (710)
Q Consensus 225 ~Dl~~~ 230 (710)
+|+.+.
T Consensus 112 ~Dl~~~ 117 (174)
T smart00174 112 LDLRED 117 (174)
T ss_pred hhhhhC
Confidence 999754
No 125
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.97 E-value=6.3e-09 Score=99.23 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=68.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+|+|..+||||||+++|++..+ +....++|......
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~~~----------------------------------------- 38 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSYRK----------------------------------------- 38 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeEEE-----------------------------------------
Confidence 489999999999999999998863 33332222211000
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---H
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l 205 (710)
...+. .....+.++|+||.. .+..+...++...+.+|+++...+.+ .-.+. +
T Consensus 39 ----------~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~ 93 (160)
T cd00876 39 ----------TIVVD-GETYTLDILDTAGQE-------------EFSAMRDLYIRQGDGFILVYSITDRE-SFEEIKGYR 93 (160)
T ss_pred ----------EEEEC-CEEEEEEEEECCChH-------------HHHHHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHH
Confidence 00010 011358899999943 34556667888888666555433322 11121 2
Q ss_pred HHHHhhCC-CCCcEEEeeccccccC
Q 005171 206 QIAGIADP-DGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp-~g~rtI~VlTK~Dl~~ 229 (710)
.......+ .+.++++|+||+|+..
T Consensus 94 ~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 94 EQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHhcCCCCCcEEEEEECCcccc
Confidence 22233333 4789999999999976
No 126
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.97 E-value=4.8e-09 Score=101.64 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=41.6
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hHHHHHHHhhC---CCCCcEEEe
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDALQIAGIAD---PDGYRTIGI 221 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~~l~la~~~d---p~g~rtI~V 221 (710)
..+.+|||||... +..+...|+..++++|+++. .+...+- ..++..++++. ....++++|
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d-~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 114 (165)
T cd04140 49 CTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVYS-VTSKQSLEELKPIYELICEIKGNNIEKIPIMLV 114 (165)
T ss_pred EEEEEEECCCCCc-------------chHHHHHHhhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 3689999999542 33455567888886665544 3332221 12233344432 246799999
Q ss_pred eccccccC
Q 005171 222 ITKLDIMD 229 (710)
Q Consensus 222 lTK~Dl~~ 229 (710)
.||+|+..
T Consensus 115 ~nK~Dl~~ 122 (165)
T cd04140 115 GNKCDESH 122 (165)
T ss_pred EECccccc
Confidence 99999864
No 127
>PLN03110 Rab GTPase; Provisional
Probab=98.96 E-value=1.8e-08 Score=102.75 Aligned_cols=117 Identities=16% Similarity=0.203 Sum_probs=71.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
.-.|+|||++++|||||++.|++..+.. ...+ |-. +. +
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~-t~g---~~------------~------------------------- 49 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKS-TIG---VE------------F------------------------- 49 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCC-cee---EE------------E-------------------------
Confidence 3479999999999999999999987522 1111 100 00 0
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SD 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~ 203 (710)
....+.+.+ ....+.||||||- +.+..+...|++.++++|+++ +.+....- ..
T Consensus 50 ---------~~~~v~~~~-~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~~~~ilv~-d~~~~~s~~~~~~ 105 (216)
T PLN03110 50 ---------ATRTLQVEG-KTVKAQIWDTAGQ-------------ERYRAITSAYYRGAVGALLVY-DITKRQTFDNVQR 105 (216)
T ss_pred ---------EEEEEEECC-EEEEEEEEECCCc-------------HHHHHHHHHHhCCCCEEEEEE-ECCChHHHHHHHH
Confidence 000111111 1236889999992 356677788999988655554 44322111 12
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
++..++...+.+.++++|.||+|+..
T Consensus 106 ~~~~~~~~~~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 106 WLRELRDHADSNIVIMMAGNKSDLNH 131 (216)
T ss_pred HHHHHHHhCCCCCeEEEEEEChhccc
Confidence 34445555556789999999999853
No 128
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.96 E-value=8.9e-09 Score=99.76 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
+|+++|..++|||||+|+|.|..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~ 25 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY 25 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999999864
No 129
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.96 E-value=2e-08 Score=99.59 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=43.3
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---HHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l~la~~~dp~g~rtI~VlTK 224 (710)
..+.+|||||.. ....+...++++++++|+++.. +...+-.. ++...+...+...++++|.||
T Consensus 49 ~~~~i~Dt~g~~-------------~~~~~~~~~~~~~d~iilv~d~-~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK 114 (188)
T cd04125 49 IKLQIWDTNGQE-------------RFRSLNNSYYRGAHGYLLVYDV-TDQESFENLKFWINEINRYARENVIKVIVANK 114 (188)
T ss_pred EEEEEEECCCcH-------------HHHhhHHHHccCCCEEEEEEEC-cCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 358899999932 4455677889999866666543 32222111 222333444445789999999
Q ss_pred ccccC
Q 005171 225 LDIMD 229 (710)
Q Consensus 225 ~Dl~~ 229 (710)
.|+.+
T Consensus 115 ~Dl~~ 119 (188)
T cd04125 115 SDLVN 119 (188)
T ss_pred CCCcc
Confidence 99874
No 130
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.96 E-value=3.9e-09 Score=105.46 Aligned_cols=68 Identities=21% Similarity=0.213 Sum_probs=45.5
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..+.||||||.. .+..++..|++.++++|++ +++........ ..+.+.+...+.+.++|+||+|+
T Consensus 65 ~~~~l~DtpG~~-------------~~~~~~~~~~~~~d~~ilV-~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~Dl 129 (194)
T cd01891 65 TKINIVDTPGHA-------------DFGGEVERVLSMVDGVLLL-VDASEGPMPQT-RFVLKKALELGLKPIVVINKIDR 129 (194)
T ss_pred EEEEEEECCCcH-------------HHHHHHHHHHHhcCEEEEE-EECCCCccHHH-HHHHHHHHHcCCCEEEEEECCCC
Confidence 468999999953 3556777899999865554 45544332221 23344444457899999999999
Q ss_pred cCc
Q 005171 228 MDR 230 (710)
Q Consensus 228 ~~~ 230 (710)
.+.
T Consensus 130 ~~~ 132 (194)
T cd01891 130 PDA 132 (194)
T ss_pred CCC
Confidence 753
No 131
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.95 E-value=9.5e-09 Score=99.32 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=42.7
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH----HHhhCCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI----AGIADPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l----a~~~dp~g~rtI~VlT 223 (710)
..+.+|||||.. .+..+...++..++++|++ +++...-.-...... .+.....+.++++|+|
T Consensus 50 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~~~~v~v-vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~N 115 (167)
T cd04160 50 ARLKFWDLGGQE-------------SLRSLWDKYYAECHAIIYV-IDSTDRERFEESKSALEKVLRNEALEGVPLLILAN 115 (167)
T ss_pred EEEEEEECCCCh-------------hhHHHHHHHhCCCCEEEEE-EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 468999999953 3455667789999855555 444432111122222 2222234689999999
Q ss_pred cccccCc
Q 005171 224 KLDIMDR 230 (710)
Q Consensus 224 K~Dl~~~ 230 (710)
|+|+...
T Consensus 116 K~D~~~~ 122 (167)
T cd04160 116 KQDLPDA 122 (167)
T ss_pred ccccccC
Confidence 9998653
No 132
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.94 E-value=3.6e-09 Score=101.91 Aligned_cols=115 Identities=19% Similarity=0.234 Sum_probs=67.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+++|.+++|||||++.+++..+.+.-. +++. . .+
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~-~t~~-~------------~~------------------------------ 38 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYD-PTIE-D------------FY------------------------------ 38 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCC-Cchh-h------------eE------------------------------
Confidence 69999999999999999999887633211 1100 0 00
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccc-hHHHH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN-SDALQ 206 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~-~~~l~ 206 (710)
...+.+.+ ....+.||||||.. .+..+...|+++++++|+++...+.. +.. ..++.
T Consensus 39 --------~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~ 96 (163)
T cd04176 39 --------RKEIEVDS-SPSVLEILDTAGTE-------------QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRD 96 (163)
T ss_pred --------EEEEEECC-EEEEEEEEECCCcc-------------cccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00111111 11258899999943 33455667889998766665433321 111 11122
Q ss_pred HHHh-hCCCCCcEEEeeccccccC
Q 005171 207 IAGI-ADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 207 la~~-~dp~g~rtI~VlTK~Dl~~ 229 (710)
.+.. ....+.++++|.||+|+.+
T Consensus 97 ~~~~~~~~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 97 QIVRVKGYEKVPIILVGNKVDLES 120 (163)
T ss_pred HHHHhcCCCCCCEEEEEECccchh
Confidence 2222 2335789999999999864
No 133
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.94 E-value=7.9e-09 Score=104.72 Aligned_cols=82 Identities=12% Similarity=0.160 Sum_probs=46.1
Q ss_pred cccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH--HHHHHH
Q 005171 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--ALQIAG 209 (710)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--~l~la~ 209 (710)
+++.+.....+.. ....+.||||||.. .+...+..++..++ ++++|+++.......+ ...+++
T Consensus 62 g~T~~~~~~~~~~-~~~~~~liDTpG~~-------------~~~~~~~~~~~~ad-~~llVvD~~~~~~~~~~~~~~~~~ 126 (208)
T cd04166 62 GITIDVAYRYFST-PKRKFIIADTPGHE-------------QYTRNMVTGASTAD-LAILLVDARKGVLEQTRRHSYILS 126 (208)
T ss_pred CcCeecceeEEec-CCceEEEEECCcHH-------------HHHHHHHHhhhhCC-EEEEEEECCCCccHhHHHHHHHHH
Confidence 3444444444333 33578999999952 12222345678888 5555566665543322 123333
Q ss_pred hhCCCCCcEEEeeccccccCc
Q 005171 210 IADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 210 ~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
... ..++|+|+||+|+.+.
T Consensus 127 ~~~--~~~iIvviNK~D~~~~ 145 (208)
T cd04166 127 LLG--IRHVVVAVNKMDLVDY 145 (208)
T ss_pred HcC--CCcEEEEEEchhcccC
Confidence 332 1457889999999753
No 134
>PLN03108 Rab family protein; Provisional
Probab=98.93 E-value=2.2e-08 Score=101.52 Aligned_cols=117 Identities=19% Similarity=0.244 Sum_probs=69.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
.-+|+|||+.++|||||++.|++..|.+......+. .+.
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~--------------~~~--------------------------- 44 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV--------------EFG--------------------------- 44 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccc--------------eEE---------------------------
Confidence 357999999999999999999998764332110000 000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---H
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (710)
...+.+.+. ...+.||||||.. .+..+...|++.++++|+++...+.. +-. .
T Consensus 45 ----------~~~i~~~~~-~i~l~l~Dt~G~~-------------~~~~~~~~~~~~ad~~vlv~D~~~~~-s~~~l~~ 99 (210)
T PLN03108 45 ----------ARMITIDNK-PIKLQIWDTAGQE-------------SFRSITRSYYRGAAGALLVYDITRRE-TFNHLAS 99 (210)
T ss_pred ----------EEEEEECCE-EEEEEEEeCCCcH-------------HHHHHHHHHhccCCEEEEEEECCcHH-HHHHHHH
Confidence 001111111 1258899999932 45566678888888666655443322 111 1
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
++..+........++++|.||+|+.+
T Consensus 100 ~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 100 WLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHHHHHHhcCCCCcEEEEEECccCcc
Confidence 22223333344688999999999864
No 135
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.93 E-value=7.3e-09 Score=102.75 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=68.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
-++|+++|.++||||||++.|+|..+... .+|..+...
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~---~~t~~~~~~--------------------------------------- 54 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQH---QPTQHPTSE--------------------------------------- 54 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCccc---CCccccceE---------------------------------------
Confidence 37899999999999999999999764211 122222110
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccchH--
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LANSD-- 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~~~-- 203 (710)
.+.+ ....+.++||||.. ..+.+...|+.+++++|+++...+.+ +....
T Consensus 55 ------------~~~~---~~~~~~~~D~~G~~-------------~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~ 106 (184)
T smart00178 55 ------------ELAI---GNIKFTTFDLGGHQ-------------QARRLWKDYFPEVNGIVYLVDAYDKERFAESKRE 106 (184)
T ss_pred ------------EEEE---CCEEEEEEECCCCH-------------HHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHH
Confidence 0111 01358899999953 34556678999998666655443321 11111
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..++.+...-.+.++++|+||+|+..
T Consensus 107 l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 107 LDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHcChhhcCCCEEEEEeCccccC
Confidence 11122211224689999999999853
No 136
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.93 E-value=1e-08 Score=105.25 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=48.2
Q ss_pred CCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHh-cCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeec
Q 005171 145 PHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYI-KQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIIT 223 (710)
Q Consensus 145 p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi-~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlT 223 (710)
.....++||||||.. ...+.++.... ..+| ++++|+++..+....+ ..++..+...+.+.++|+|
T Consensus 81 ~~~~~i~liDtpG~~------------~~~~~~~~~~~~~~~D-~~llVvda~~g~~~~d-~~~l~~l~~~~ip~ivvvN 146 (224)
T cd04165 81 KSSKLVTFIDLAGHE------------RYLKTTLFGLTGYAPD-YAMLVVAANAGIIGMT-KEHLGLALALNIPVFVVVT 146 (224)
T ss_pred eCCcEEEEEECCCcH------------HHHHHHHHhhcccCCC-EEEEEEECCCCCcHHH-HHHHHHHHHcCCCEEEEEE
Confidence 334579999999953 23333333322 2455 5666777777766554 5666666667889999999
Q ss_pred cccccCc
Q 005171 224 KLDIMDR 230 (710)
Q Consensus 224 K~Dl~~~ 230 (710)
|+|++++
T Consensus 147 K~D~~~~ 153 (224)
T cd04165 147 KIDLAPA 153 (224)
T ss_pred CccccCH
Confidence 9999864
No 137
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.93 E-value=6.3e-09 Score=101.19 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=43.1
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhC--CCCCcEEEeeccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIAD--PDGYRTIGIITKL 225 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~d--p~g~rtI~VlTK~ 225 (710)
..+.+|||||-. .++.+...|+++++++|+++. +.....-..+......+. ..+.++++|.||.
T Consensus 44 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~ii~V~D-~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~ 109 (164)
T cd04162 44 AIMELLEIGGSQ-------------NLRKYWKRYLSGSQGLIFVVD-SADSERLPLARQELHQLLQHPPDLPLVVLANKQ 109 (164)
T ss_pred eEEEEEECCCCc-------------chhHHHHHHHhhCCEEEEEEE-CCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCc
Confidence 368999999943 345666789999996665554 433221112222222221 2478999999999
Q ss_pred cccCc
Q 005171 226 DIMDR 230 (710)
Q Consensus 226 Dl~~~ 230 (710)
|+...
T Consensus 110 Dl~~~ 114 (164)
T cd04162 110 DLPAA 114 (164)
T ss_pred CCcCC
Confidence 98643
No 138
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.92 E-value=7.6e-09 Score=119.62 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=77.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
+..|.|+|+|..++|||||||+|++..+.....|..|+-.-...+. .. . ..+
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~-~~----~-----~~~------------------ 53 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIP-MD----V-----IEG------------------ 53 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEee-ec----c-----ccc------------------
Confidence 4579999999999999999999999977544444444321000000 00 0 000
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
..+ ...-..++..+ .+.++||||||.. .+..+...++..+++ +++|++++.....+.
T Consensus 54 -~~~------~~~~~~~v~~~-~~~l~~iDTpG~e-------------~f~~l~~~~~~~aD~-~IlVvD~~~g~~~qt- 110 (590)
T TIGR00491 54 -ICG------DLLKKFKIRLK-IPGLLFIDTPGHE-------------AFTNLRKRGGALADL-AILIVDINEGFKPQT- 110 (590)
T ss_pred -ccc------ccccccccccc-cCcEEEEECCCcH-------------hHHHHHHHHHhhCCE-EEEEEECCcCCCHhH-
Confidence 000 00000011111 2359999999942 345566678888884 555556665443332
Q ss_pred HHHHHhhCCCCCcEEEeeccccccC
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
...+..+...+.++|+|+||+|+.+
T Consensus 111 ~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 111 QEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHHcCCCEEEEEECCCccc
Confidence 3333444445789999999999975
No 139
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.92 E-value=1e-08 Score=100.23 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
.-++|+++|..++|||||+++|++..+ +. .. +|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~-~~-~t~g------------------------------------------ 47 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DT-IS-PTLG------------------------------------------ 47 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CC-cC-Cccc------------------------------------------
Confidence 457899999999999999999998743 11 00 0100
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
+.. -.+.+. ...+.||||||.. .++.+...|++.++++|+++ ++.....-.+..
T Consensus 48 -------~~~--~~~~~~---~~~l~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~ 101 (173)
T cd04154 48 -------FQI--KTLEYE---GYKLNIWDVGGQK-------------TLRPYWRNYFESTDALIWVV-DSSDRLRLDDCK 101 (173)
T ss_pred -------cce--EEEEEC---CEEEEEEECCCCH-------------HHHHHHHHHhCCCCEEEEEE-ECCCHHHHHHHH
Confidence 000 011111 2358999999942 34566778999998655554 444331111211
Q ss_pred ----HHHHhhCCCCCcEEEeeccccccCc
Q 005171 206 ----QIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 206 ----~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+.+.....+.++++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 102 RELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 1222222246899999999999753
No 140
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.92 E-value=1.3e-08 Score=99.33 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=42.2
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHH-HHHHHHhcCCCeEEEEEecCCCcccchHH---HHHHHhh-CCCCCcEEEee
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIR-TMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIA-DPDGYRTIGII 222 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~-~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l~la~~~-dp~g~rtI~Vl 222 (710)
..+.||||||.. .++ .+...|+++++++|+++...+ ...-... +..+... .....++++|.
T Consensus 51 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~iiv~ 116 (170)
T cd04115 51 IKVQLWDTAGQE-------------RFRKSMVQHYYRNVHAVVFVYDVTN-MASFHSLPSWIEECEQHSLPNEVPRILVG 116 (170)
T ss_pred EEEEEEeCCChH-------------HHHHhhHHHhhcCCCEEEEEEECCC-HHHHHhHHHHHHHHHHhcCCCCCCEEEEE
Confidence 368999999932 232 466778899997766654433 2222222 2222222 23468999999
Q ss_pred ccccccC
Q 005171 223 TKLDIMD 229 (710)
Q Consensus 223 TK~Dl~~ 229 (710)
||+|+..
T Consensus 117 nK~Dl~~ 123 (170)
T cd04115 117 NKCDLRE 123 (170)
T ss_pred ECccchh
Confidence 9999864
No 141
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.92 E-value=9.5e-09 Score=100.17 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=44.6
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhh----CCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA----DPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~----dp~g~rtI~VlT 223 (710)
..+.++|+||- ..++.+...|+++++++|+++ ++.....-.++......+ ...+.++++|+|
T Consensus 43 ~~~~i~D~~G~-------------~~~~~~~~~~~~~a~~ii~V~-D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~N 108 (167)
T cd04161 43 YEVCIFDLGGG-------------ANFRGIWVNYYAEAHGLVFVV-DSSDDDRVQEVKEILRELLQHPRVSGKPILVLAN 108 (167)
T ss_pred EEEEEEECCCc-------------HHHHHHHHHHHcCCCEEEEEE-ECCchhHHHHHHHHHHHHHcCccccCCcEEEEEe
Confidence 46899999993 245677789999999666655 444322222222222222 224689999999
Q ss_pred cccccCc
Q 005171 224 KLDIMDR 230 (710)
Q Consensus 224 K~Dl~~~ 230 (710)
|.|+.+.
T Consensus 109 K~Dl~~~ 115 (167)
T cd04161 109 KQDKKNA 115 (167)
T ss_pred CCCCcCC
Confidence 9999654
No 142
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.92 E-value=1.9e-08 Score=99.66 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=42.3
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhh-CC---CCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA-DP---DGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~-dp---~g~rtI~VlT 223 (710)
..+.||||||.. ..+.+...|++.++++|+++...+.. .-.++......+ .. ...++++|+|
T Consensus 61 ~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~iI~v~D~t~~~-s~~~~~~~l~~~~~~~~~~~~piilv~N 126 (182)
T PTZ00133 61 LKFTMWDVGGQD-------------KLRPLWRHYYQNTNGLIFVVDSNDRE-RIGDAREELERMLSEDELRDAVLLVFAN 126 (182)
T ss_pred EEEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhCHhhcCCCEEEEEe
Confidence 358999999942 45667788999999766665433321 111222222222 21 2478999999
Q ss_pred cccccC
Q 005171 224 KLDIMD 229 (710)
Q Consensus 224 K~Dl~~ 229 (710)
|.|+.+
T Consensus 127 K~Dl~~ 132 (182)
T PTZ00133 127 KQDLPN 132 (182)
T ss_pred CCCCCC
Confidence 999854
No 143
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.92 E-value=2.3e-08 Score=103.29 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
+|+++|.+|+|||||+|+|+|..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~ 24 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK 24 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999985
No 144
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.91 E-value=1.7e-08 Score=98.43 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
..|+|+|+.++|||||++.+++..+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~ 26 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF 26 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999998765
No 145
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.91 E-value=2.5e-08 Score=99.44 Aligned_cols=66 Identities=32% Similarity=0.445 Sum_probs=39.4
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH--HHHHHHhhCCCCCcEEEeeccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--ALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--~l~la~~~dp~g~rtI~VlTK~ 225 (710)
..++||||||.. ..++.. ...+..++ .+++|+++.......+ .+.++.. .+.+.++|+||+
T Consensus 68 ~~~~i~DtpG~~------------~~~~~~-~~~~~~~d-~vi~VvD~~~~~~~~~~~~~~~~~~---~~~~~iiv~NK~ 130 (192)
T cd01889 68 LQITLVDCPGHA------------SLIRTI-IGGAQIID-LMLLVVDATKGIQTQTAECLVIGEI---LCKKLIVVLNKI 130 (192)
T ss_pred ceEEEEECCCcH------------HHHHHH-HHHHhhCC-EEEEEEECCCCccHHHHHHHHHHHH---cCCCEEEEEECc
Confidence 479999999952 122222 24445566 4555666665443332 2233332 357999999999
Q ss_pred cccCc
Q 005171 226 DIMDR 230 (710)
Q Consensus 226 Dl~~~ 230 (710)
|+...
T Consensus 131 Dl~~~ 135 (192)
T cd01889 131 DLIPE 135 (192)
T ss_pred ccCCH
Confidence 99853
No 146
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.91 E-value=2.8e-08 Score=98.43 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=43.9
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhh-C---CCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA-D---PDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~-d---p~g~rtI~VlT 223 (710)
..+.|||+||- +.++.+...|+++++++|+++ ++.....-.++......+ . ....++++|+|
T Consensus 61 ~~~~i~D~~Gq-------------~~~~~~~~~~~~~a~~iI~V~-D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~N 126 (181)
T PLN00223 61 ISFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVV-DSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN 126 (181)
T ss_pred EEEEEEECCCC-------------HHHHHHHHHHhccCCEEEEEE-eCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEE
Confidence 35899999992 356778888999999665555 444322222222222222 2 13578999999
Q ss_pred cccccCc
Q 005171 224 KLDIMDR 230 (710)
Q Consensus 224 K~Dl~~~ 230 (710)
|.|+.+.
T Consensus 127 K~Dl~~~ 133 (181)
T PLN00223 127 KQDLPNA 133 (181)
T ss_pred CCCCCCC
Confidence 9998643
No 147
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.91 E-value=1.4e-08 Score=97.34 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=43.1
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH----HHHHHhhCCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA----LQIAGIADPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~----l~la~~~dp~g~rtI~VlT 223 (710)
..+.+|||||.. ....+...++...++++++ .++...-.-..+ ..+.+.....+.++++|+|
T Consensus 43 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~i~v-~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd00878 43 VSFTVWDVGGQD-------------KIRPLWKHYYENTNGIIFV-VDSSDRERIEEAKEELHKLLNEEELKGVPLLIFAN 108 (158)
T ss_pred EEEEEEECCCCh-------------hhHHHHHHHhccCCEEEEE-EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEee
Confidence 469999999943 3345666788888865555 444432111111 2222333345789999999
Q ss_pred cccccCc
Q 005171 224 KLDIMDR 230 (710)
Q Consensus 224 K~Dl~~~ 230 (710)
|+|+...
T Consensus 109 K~D~~~~ 115 (158)
T cd00878 109 KQDLPGA 115 (158)
T ss_pred ccCCccc
Confidence 9999753
No 148
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.90 E-value=2.1e-08 Score=99.43 Aligned_cols=122 Identities=17% Similarity=0.259 Sum_probs=72.4
Q ss_pred HHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHH
Q 005171 36 FAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEI 115 (710)
Q Consensus 36 ~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i 115 (710)
++.+|. ...-.+|+++|..+||||||+++|++..+.+ ..+|..|..
T Consensus 10 ~~~~~~--~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~---~~~T~~~~~----------------------------- 55 (190)
T cd00879 10 LSSLGL--YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQ---HVPTLHPTS----------------------------- 55 (190)
T ss_pred HHHhhc--ccCCCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccCcce-----------------------------
Confidence 344553 3456889999999999999999999876421 112222210
Q ss_pred HHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecC
Q 005171 116 RREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPA 195 (710)
Q Consensus 116 ~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a 195 (710)
..+.+. ...+.++|+||.. ..+.+...|++.++.+|+++...
T Consensus 56 ----------------------~~i~~~---~~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~iilV~D~~ 97 (190)
T cd00879 56 ----------------------EELTIG---NIKFKTFDLGGHE-------------QARRLWKDYFPEVDGIVFLVDAA 97 (190)
T ss_pred ----------------------EEEEEC---CEEEEEEECCCCH-------------HHHHHHHHHhccCCEEEEEEECC
Confidence 011111 1358899999932 34556678899998665555433
Q ss_pred CCc-ccch--HHHHHHHhhCCCCCcEEEeeccccccC
Q 005171 196 NSD-LANS--DALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 196 ~~d-~~~~--~~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
+.. +... ....+.+.....+.++++|+||+|+.+
T Consensus 98 ~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 98 DPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred cHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 221 1111 111222222234689999999999864
No 149
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.90 E-value=8.9e-09 Score=101.21 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=42.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhh----CCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA----DPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~----dp~g~rtI~VlT 223 (710)
..+.|+||||.. ..+.+...|+++++++|+++...+.+ .-.++......+ ...+.++++|+|
T Consensus 57 ~~l~l~D~~G~~-------------~~~~~~~~~~~~ad~ii~v~D~t~~~-s~~~~~~~l~~~~~~~~~~~~piilv~N 122 (175)
T smart00177 57 ISFTVWDVGGQD-------------KIRPLWRHYYTNTQGLIFVVDSNDRD-RIDEAREELHRMLNEDELRDAVILVFAN 122 (175)
T ss_pred EEEEEEECCCCh-------------hhHHHHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHhhCHhhcCCcEEEEEe
Confidence 368999999943 45667788999999666655433322 112222222222 113578999999
Q ss_pred cccccC
Q 005171 224 KLDIMD 229 (710)
Q Consensus 224 K~Dl~~ 229 (710)
|.|+.+
T Consensus 123 K~Dl~~ 128 (175)
T smart00177 123 KQDLPD 128 (175)
T ss_pred CcCccc
Confidence 999864
No 150
>PLN03118 Rab family protein; Provisional
Probab=98.90 E-value=1.2e-08 Score=103.53 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=41.3
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccch-H-HHHHHHhhC-CCCCcEEEeecc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LANS-D-ALQIAGIAD-PDGYRTIGIITK 224 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~~-~-~l~la~~~d-p~g~rtI~VlTK 224 (710)
.+.||||||.. .+..+...|++..+++||++...+.. +.+- + +........ ..+.+.++|.||
T Consensus 63 ~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK 129 (211)
T PLN03118 63 KLTIWDTAGQE-------------RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNK 129 (211)
T ss_pred EEEEEECCCch-------------hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 58999999943 44566778999998666665433321 1111 1 112222222 235688999999
Q ss_pred ccccC
Q 005171 225 LDIMD 229 (710)
Q Consensus 225 ~Dl~~ 229 (710)
+|+..
T Consensus 130 ~Dl~~ 134 (211)
T PLN03118 130 VDRES 134 (211)
T ss_pred ccccc
Confidence 99964
No 151
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.89 E-value=2.8e-08 Score=97.05 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=42.6
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhh-C---CCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA-D---PDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~-d---p~g~rtI~VlT 223 (710)
..+.||||||.. ..+.+...|+++++++|+++. +.....-.++...+.++ . ..+.++++|.|
T Consensus 53 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~a~~ii~v~D-~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 118 (168)
T cd04149 53 VKFNVWDVGGQD-------------KIRPLWRHYYTGTQGLIFVVD-SADRDRIDEARQELHRIINDREMRDALLLVFAN 118 (168)
T ss_pred EEEEEEECCCCH-------------HHHHHHHHHhccCCEEEEEEe-CCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEE
Confidence 358999999943 345566779999986555554 44322222222322222 1 13579999999
Q ss_pred cccccC
Q 005171 224 KLDIMD 229 (710)
Q Consensus 224 K~Dl~~ 229 (710)
|+|+.+
T Consensus 119 K~Dl~~ 124 (168)
T cd04149 119 KQDLPD 124 (168)
T ss_pred CcCCcc
Confidence 999864
No 152
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.89 E-value=1e-08 Score=99.62 Aligned_cols=115 Identities=20% Similarity=0.294 Sum_probs=68.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|++||.+||||||+++++++..+.+.-. +++.. .+..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~~~-~t~~~-------------~~~~---------------------------- 40 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIESYD-PTIED-------------SYRK---------------------------- 40 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccC-Ccchh-------------eEEE----------------------------
Confidence 59999999999999999999887632211 11110 0100
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccc-hHHHH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN-SDALQ 206 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~-~~~l~ 206 (710)
.+.+.+ ....+.+|||||.. .+..+...|+...+.+||++...+.. +.. .....
T Consensus 41 ----------~~~~~~-~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~ 96 (168)
T cd04177 41 ----------QVEIDG-RQCDLEILDTAGTE-------------QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELRE 96 (168)
T ss_pred ----------EEEECC-EEEEEEEEeCCCcc-------------cchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHH
Confidence 111111 11358899999943 34556677888888666665433321 111 11122
Q ss_pred HHHh-hCCCCCcEEEeeccccccC
Q 005171 207 IAGI-ADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 207 la~~-~dp~g~rtI~VlTK~Dl~~ 229 (710)
.... ....+.++++|.||.|+.+
T Consensus 97 ~i~~~~~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 97 QVLRIKDSDNVPMVLVGNKADLED 120 (168)
T ss_pred HHHHhhCCCCCCEEEEEEChhccc
Confidence 2222 3345789999999999864
No 153
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.88 E-value=1.8e-08 Score=98.28 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=41.2
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhh----CCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA----DPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~----dp~g~rtI~VlT 223 (710)
..+.+|||||.. ..+.+...|++.++++|+++...+.. .-.++......+ ...+.++++|.|
T Consensus 43 ~~i~l~Dt~G~~-------------~~~~~~~~~~~~ad~ii~V~D~s~~~-s~~~~~~~~~~~~~~~~~~~~piilv~N 108 (169)
T cd04158 43 LKFTIWDVGGKH-------------KLRPLWKHYYLNTQAVVFVVDSSHRD-RVSEAHSELAKLLTEKELRDALLLIFAN 108 (169)
T ss_pred EEEEEEECCCCh-------------hcchHHHHHhccCCEEEEEEeCCcHH-HHHHHHHHHHHHhcChhhCCCCEEEEEe
Confidence 368999999953 23456667889998666665443321 111222222222 123478999999
Q ss_pred cccccC
Q 005171 224 KLDIMD 229 (710)
Q Consensus 224 K~Dl~~ 229 (710)
|.|+.+
T Consensus 109 K~Dl~~ 114 (169)
T cd04158 109 KQDVAG 114 (169)
T ss_pred CcCccc
Confidence 999964
No 154
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.88 E-value=1.2e-08 Score=99.29 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=40.4
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---HHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l~la~~~dp~g~rtI~VlTK 224 (710)
..+.+|||||... ...+...|+..++++|+++ +.+...+-.. ++..++...+ ..++++|.||
T Consensus 49 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK 113 (166)
T cd00877 49 IRFNVWDTAGQEK-------------FGGLRDGYYIGGQCAIIMF-DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNK 113 (166)
T ss_pred EEEEEEECCCChh-------------hccccHHHhcCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEc
Confidence 3689999999532 2233445778888665554 4443222222 2233333333 6899999999
Q ss_pred cccc
Q 005171 225 LDIM 228 (710)
Q Consensus 225 ~Dl~ 228 (710)
+|+.
T Consensus 114 ~Dl~ 117 (166)
T cd00877 114 VDIK 117 (166)
T ss_pred hhcc
Confidence 9996
No 155
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.88 E-value=2.8e-08 Score=104.67 Aligned_cols=136 Identities=17% Similarity=0.208 Sum_probs=75.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
..|+|+|..++|||||+|+|+...- ...+... +. . .. ..|....|+.....+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g------~i~~~g~-v~--~----~~------~~~~t~~D~~~~e~~--------- 54 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGG------AIREAGA-VK--A----RK------SRKHATSDWMEIEKQ--------- 54 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcC------CcccCce-ec--c----cc------cCCCccCCCcHHHHh---------
Confidence 4699999999999999999986531 1111110 00 0 00 001112233221111
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (710)
.+..+......++.. ...+.||||||.. .+...+..+++.++++|+ |+++......+. ..+
T Consensus 55 -rg~si~~~~~~~~~~---~~~i~liDTPG~~-------------df~~~~~~~l~~aD~~Il-Vvda~~g~~~~~-~~i 115 (267)
T cd04169 55 -RGISVTSSVMQFEYR---DCVINLLDTPGHE-------------DFSEDTYRTLTAVDSAVM-VIDAAKGVEPQT-RKL 115 (267)
T ss_pred -CCCCeEEEEEEEeeC---CEEEEEEECCCch-------------HHHHHHHHHHHHCCEEEE-EEECCCCccHHH-HHH
Confidence 112222333333332 2579999999954 233445677888886655 455554443222 344
Q ss_pred HHhhCCCCCcEEEeeccccccCc
Q 005171 208 AGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 208 a~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+.....+.++++|+||+|+...
T Consensus 116 ~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 116 FEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHhcCCCEEEEEECCccCCC
Confidence 45555567899999999998654
No 156
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.87 E-value=1.1e-08 Score=107.86 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=47.1
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..++||||||..+ +...+..+++..+++| +|+++......++ ..+++.+...+.+.++|+||+|+
T Consensus 64 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD~ai-lVVDa~~g~~~~t-~~~~~~~~~~~~p~ivviNK~D~ 128 (270)
T cd01886 64 HRINIIDTPGHVD-------------FTIEVERSLRVLDGAV-AVFDAVAGVEPQT-ETVWRQADRYNVPRIAFVNKMDR 128 (270)
T ss_pred EEEEEEECCCcHH-------------HHHHHHHHHHHcCEEE-EEEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECCCC
Confidence 4689999999642 2234567888888555 5556665554433 45555555667899999999999
Q ss_pred cCc
Q 005171 228 MDR 230 (710)
Q Consensus 228 ~~~ 230 (710)
...
T Consensus 129 ~~a 131 (270)
T cd01886 129 TGA 131 (270)
T ss_pred CCC
Confidence 753
No 157
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.87 E-value=4.3e-08 Score=97.20 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=42.0
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l~la~~~dp~g~rtI~VlTK 224 (710)
..+.+|||+|- +.+..+...|+++++++++++. .....+-. .++..++...+...+ |+|.||
T Consensus 49 ~~l~iwDt~G~-------------~~~~~~~~~~~~~a~~iilv~D-~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK 113 (182)
T cd04128 49 ITFSIWDLGGQ-------------REFINMLPLVCNDAVAILFMFD-LTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTK 113 (182)
T ss_pred EEEEEEeCCCc-------------hhHHHhhHHHCcCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEc
Confidence 36899999993 2455677779999985555554 43322212 233444444444445 789999
Q ss_pred ccccC
Q 005171 225 LDIMD 229 (710)
Q Consensus 225 ~Dl~~ 229 (710)
+|+..
T Consensus 114 ~Dl~~ 118 (182)
T cd04128 114 YDLFA 118 (182)
T ss_pred hhccc
Confidence 99964
No 158
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.87 E-value=1.3e-08 Score=98.53 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
+|+|+|..++|||||+++|++..+
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~ 25 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999999876
No 159
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.87 E-value=1.3e-08 Score=97.79 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=43.0
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc----hHHHHHHHhhCCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN----SDALQIAGIADPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~----~~~l~la~~~dp~g~rtI~VlT 223 (710)
..+.+|||||.. .++.+...|+..++++|+++ ++.....- .....+.+.....+.++++|+|
T Consensus 43 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~ii~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd04151 43 LKFQVWDLGGQT-------------SIRPYWRCYYSNTDAIIYVV-DSTDRDRLGTAKEELHAMLEEEELKGAVLLVFAN 108 (158)
T ss_pred EEEEEEECCCCH-------------HHHHHHHHHhcCCCEEEEEE-ECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEe
Confidence 358999999953 34566778999998655554 54432111 1112222322224689999999
Q ss_pred cccccCc
Q 005171 224 KLDIMDR 230 (710)
Q Consensus 224 K~Dl~~~ 230 (710)
|+|+.+.
T Consensus 109 K~Dl~~~ 115 (158)
T cd04151 109 KQDMPGA 115 (158)
T ss_pred CCCCCCC
Confidence 9999743
No 160
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.86 E-value=2.6e-08 Score=97.02 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
+|+|+|..++|||||++++++..|
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~ 25 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 599999999999999999999876
No 161
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.86 E-value=3e-08 Score=95.91 Aligned_cols=115 Identities=17% Similarity=0.257 Sum_probs=69.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+|+|+.++|||||++.+++..|.+... .|... .+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~t~~~------------~~~----------------------------- 38 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHI--STIGV------------DFK----------------------------- 38 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCC--Cceee------------EEE-----------------------------
Confidence 59999999999999999999988743321 11100 000
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---H
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---L 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l 205 (710)
...+.+.+ ....+.+|||||- +....+...|+..++++++++. .+..-+-... +
T Consensus 39 --------~~~~~~~~-~~~~l~i~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d-~~~~~sf~~~~~~~ 95 (161)
T cd04117 39 --------MKTIEVDG-IKVRIQIWDTAGQ-------------ERYQTITKQYYRRAQGIFLVYD-ISSERSYQHIMKWV 95 (161)
T ss_pred --------EEEEEECC-EEEEEEEEeCCCc-------------HhHHhhHHHHhcCCcEEEEEEE-CCCHHHHHHHHHHH
Confidence 00111111 1135889999993 2455667778999986665554 3322111122 2
Q ss_pred HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..++...+...++++|.||.|+.+
T Consensus 96 ~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 96 SDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred HHHHHhCCCCCeEEEEEECccccc
Confidence 222344445678999999999864
No 162
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.86 E-value=2.3e-08 Score=98.14 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=66.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+++|..|+|||||++++++..+ +....+++..... .
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~------------~----------------------------- 40 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFS------------K----------------------------- 40 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEE------------E-----------------------------
Confidence 699999999999999999998865 3222221111000 0
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH----
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---- 204 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---- 204 (710)
.+.+. .....+.||||||.. .++.+...+....+++|+++...+.. .-..+
T Consensus 41 ----------~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~ 95 (180)
T cd04137 41 ----------IIRYK-GQDYHLEIVDTAGQD-------------EYSILPQKYSIGIHGYILVYSVTSRK-SFEVVKVIY 95 (180)
T ss_pred ----------EEEEC-CEEEEEEEEECCChH-------------hhHHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHHH
Confidence 00000 011357899999943 23344456777788666665443321 11122
Q ss_pred HHHHHhhCCCCCcEEEeeccccccC
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..+++.....+.+.|+|+||+|+..
T Consensus 96 ~~~~~~~~~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 96 DKILDMLGKESVPIVLVGNKSDLHT 120 (180)
T ss_pred HHHHHhcCCCCCCEEEEEEchhhhh
Confidence 2233333345679999999999864
No 163
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.85 E-value=2.7e-08 Score=99.02 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=42.6
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCC-cccch--HHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS-DLANS--DALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~-d~~~~--~~l~la~~~dp~g~rtI~VlTK 224 (710)
..+.||||||-. .++.+...|+..++++||+..-.+. .+.+. .++..++...+ +.++|+|.||
T Consensus 48 ~~l~i~Dt~G~~-------------~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK 113 (189)
T cd04134 48 IELSLWDTAGQE-------------EFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVLVALK 113 (189)
T ss_pred EEEEEEECCCCh-------------hccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 368999999943 2334445578888877766543332 22221 12333343333 6889999999
Q ss_pred ccccCc
Q 005171 225 LDIMDR 230 (710)
Q Consensus 225 ~Dl~~~ 230 (710)
+|+.+.
T Consensus 114 ~Dl~~~ 119 (189)
T cd04134 114 CDLREA 119 (189)
T ss_pred hhhccC
Confidence 999754
No 164
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.84 E-value=1.8e-08 Score=104.25 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=45.6
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..++||||||..+ +...+..+++..+++|++| ++......+ ...+.+.+...+.++++|+||+|+
T Consensus 64 ~~i~liDTPG~~~-------------f~~~~~~~l~~aD~~IlVv-d~~~g~~~~-~~~~~~~~~~~~~P~iivvNK~D~ 128 (237)
T cd04168 64 TKVNLIDTPGHMD-------------FIAEVERSLSVLDGAILVI-SAVEGVQAQ-TRILWRLLRKLNIPTIIFVNKIDR 128 (237)
T ss_pred EEEEEEeCCCccc-------------hHHHHHHHHHHhCeEEEEE-eCCCCCCHH-HHHHHHHHHHcCCCEEEEEECccc
Confidence 4799999999752 2334567888888655554 555444332 234444455567899999999999
Q ss_pred cCc
Q 005171 228 MDR 230 (710)
Q Consensus 228 ~~~ 230 (710)
...
T Consensus 129 ~~a 131 (237)
T cd04168 129 AGA 131 (237)
T ss_pred cCC
Confidence 753
No 165
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.84 E-value=4.1e-08 Score=96.61 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=69.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
-+|+|||+.++|||||++.+++..| +....+++... +.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~-------------~~---------------------------- 39 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDN-------------YA---------------------------- 39 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeee-------------eE----------------------------
Confidence 3699999999999999999998876 32221111100 00
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccch--HH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LANS--DA 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~~--~~ 204 (710)
..+.+.+ ....+.||||||-. ....+...|+++++++||++...+.. +.+. .+
T Consensus 40 ----------~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w 95 (175)
T cd01874 40 ----------VTVMIGG-EPYTLGLFDTAGQE-------------DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 95 (175)
T ss_pred ----------EEEEECC-EEEEEEEEECCCcc-------------chhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHH
Confidence 0111111 11368999999953 23445556889998777666543322 2221 12
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+...+...+ ..++|+|.||+|+.+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (175)
T cd01874 96 VPEITHHCP-KTPFLLVGTQIDLRDD 120 (175)
T ss_pred HHHHHHhCC-CCCEEEEEECHhhhhC
Confidence 233333333 5799999999998653
No 166
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.84 E-value=5.1e-08 Score=101.50 Aligned_cols=24 Identities=25% Similarity=0.672 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
+|+|+|+.++|||||++.+++..|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f 25 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF 25 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 599999999999999999998776
No 167
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.83 E-value=9.2e-08 Score=98.57 Aligned_cols=117 Identities=18% Similarity=0.217 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
..-.|+|||+.++|||||++.+++..| +.... |++. ..+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y~-----pTi~--------~~~~-------------------------- 51 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY-PETYV-----PTVF--------ENYT-------------------------- 51 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCC-CCCcC-----Ccee--------eeeE--------------------------
Confidence 345799999999999999999998876 22211 1110 0000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccc--h
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN--S 202 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~--~ 202 (710)
..+.+.+ ....|.||||+|- +.++.+...|+++++++||+..-.+.+ +.+ .
T Consensus 52 ------------~~i~~~~-~~v~l~iwDTaG~-------------e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~ 105 (232)
T cd04174 52 ------------AGLETEE-QRVELSLWDTSGS-------------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALK 105 (232)
T ss_pred ------------EEEEECC-EEEEEEEEeCCCc-------------hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHH
Confidence 0111111 1246899999992 355667778999999666655443322 111 1
Q ss_pred HHHHHHHhhCCCCCcEEEeeccccccC
Q 005171 203 DALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 203 ~~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.++..++...+ +.++|+|.||+|+.+
T Consensus 106 ~w~~~i~~~~~-~~piilVgNK~DL~~ 131 (232)
T cd04174 106 KWKAEIMDYCP-STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHHHhCC-CCCEEEEEECccccc
Confidence 23344454444 578999999999854
No 168
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.83 E-value=6.7e-08 Score=98.87 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=41.6
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---HHHHHHhhCCCCCcEEEeeccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l~la~~~dp~g~rtI~VlTK~ 225 (710)
++.||||||-. .+..+...|++.++++|+++ +.+...+-.. .+..+.+......++|+|.||+
T Consensus 45 ~l~iwDt~G~e-------------~~~~l~~~~~~~ad~~IlV~-Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~ 110 (220)
T cd04126 45 NISIWDTAGRE-------------QFHGLGSMYCRGAAAVILTY-DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKL 110 (220)
T ss_pred EEEEEeCCCcc-------------cchhhHHHHhccCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 68999999943 33456667899998555554 4443211111 1222233334457899999999
Q ss_pred cccC
Q 005171 226 DIMD 229 (710)
Q Consensus 226 Dl~~ 229 (710)
|+.+
T Consensus 111 DL~~ 114 (220)
T cd04126 111 DLTE 114 (220)
T ss_pred cccc
Confidence 9975
No 169
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.83 E-value=7.4e-08 Score=94.68 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=43.2
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccch--HHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LANS--DALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~~--~~l~la~~~dp~g~rtI~VlTK 224 (710)
..+.||||||-. ....+...|+++++++||++...+.+ +..- .++..++...+ ..++|+|.||
T Consensus 49 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK 114 (174)
T cd01871 49 VNLGLWDTAGQE-------------DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTK 114 (174)
T ss_pred EEEEEEECCCch-------------hhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeC
Confidence 368899999942 34455567899999777666543322 1111 12233333333 5899999999
Q ss_pred ccccCc
Q 005171 225 LDIMDR 230 (710)
Q Consensus 225 ~Dl~~~ 230 (710)
+|+.+.
T Consensus 115 ~Dl~~~ 120 (174)
T cd01871 115 LDLRDD 120 (174)
T ss_pred hhhccC
Confidence 999643
No 170
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.83 E-value=6.6e-08 Score=97.58 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.|+++|..++|||||+++|.|..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~ 24 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVW 24 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998873
No 171
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.82 E-value=3.4e-08 Score=100.99 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=42.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l~la~~~dp~g~rtI~VlTK 224 (710)
..+.||||||.. .+..+...|++.++++|+++...+ ..+-. .++..++... .+.++++|.||
T Consensus 62 ~~l~i~Dt~G~~-------------~~~~~~~~~~~~~~~~ilvfD~~~-~~s~~~i~~w~~~i~~~~-~~~piilvgNK 126 (219)
T PLN03071 62 IRFYCWDTAGQE-------------KFGGLRDGYYIHGQCAIIMFDVTA-RLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126 (219)
T ss_pred EEEEEEECCCch-------------hhhhhhHHHcccccEEEEEEeCCC-HHHHHHHHHHHHHHHHhC-CCCcEEEEEEc
Confidence 468999999943 345666778999986666654333 22211 2223333333 35899999999
Q ss_pred ccccC
Q 005171 225 LDIMD 229 (710)
Q Consensus 225 ~Dl~~ 229 (710)
+|+.+
T Consensus 127 ~Dl~~ 131 (219)
T PLN03071 127 VDVKN 131 (219)
T ss_pred hhhhh
Confidence 99853
No 172
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.81 E-value=4.2e-08 Score=94.83 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=42.5
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhh-C---CCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA-D---PDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~-d---p~g~rtI~VlT 223 (710)
..+.||||||.. ....+...|+++++++|+++ ++....+-.++.+....+ . ....+.++|+|
T Consensus 44 ~~~~l~D~~G~~-------------~~~~~~~~~~~~ad~~i~v~-D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 109 (159)
T cd04150 44 ISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLIFVV-DSNDRERIGEAREELQRMLNEDELRDAVLLVFAN 109 (159)
T ss_pred EEEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEEE-eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEE
Confidence 358999999943 45566778999998665555 443321112222222222 1 12478999999
Q ss_pred cccccC
Q 005171 224 KLDIMD 229 (710)
Q Consensus 224 K~Dl~~ 229 (710)
|.|+.+
T Consensus 110 K~Dl~~ 115 (159)
T cd04150 110 KQDLPN 115 (159)
T ss_pred CCCCCC
Confidence 999964
No 173
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.81 E-value=4.4e-08 Score=90.70 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=44.3
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH----HHHHhhCCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL----QIAGIADPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l----~la~~~dp~g~rtI~VlT 223 (710)
..+++||+||.... ......++...+ .+++|.++.......+.. .........+.++++|+|
T Consensus 45 ~~~~l~D~~g~~~~-------------~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~n 110 (157)
T cd00882 45 VKLQIWDTAGQERF-------------RSLRRLYYRGAD-GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGN 110 (157)
T ss_pred EEEEEEecCChHHH-------------HhHHHHHhcCCC-EEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEe
Confidence 46899999996532 222356778887 455555655544333322 123344455799999999
Q ss_pred cccccCcc
Q 005171 224 KLDIMDRG 231 (710)
Q Consensus 224 K~Dl~~~~ 231 (710)
|+|+....
T Consensus 111 k~D~~~~~ 118 (157)
T cd00882 111 KIDLPEER 118 (157)
T ss_pred cccccccc
Confidence 99998653
No 174
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.81 E-value=1.8e-08 Score=97.42 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
.|+|||+.++|||||++++++..|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~ 24 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF 24 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc
Confidence 389999999999999999998765
No 175
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.80 E-value=5e-08 Score=114.86 Aligned_cols=119 Identities=17% Similarity=0.264 Sum_probs=74.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
..|.|+|+|..++|||||+++|.+..+.....+..|.-. +
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i--------------~-------------------------- 282 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKI--------------G-------------------------- 282 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCcccccc--------------c--------------------------
Confidence 568999999999999999999998765221111111100 0
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
...+.+.. ......++||||||. +.+..+...++..++.+||+ +++......+ ..
T Consensus 283 ---------~~~v~~~~-~~~~~kItfiDTPGh-------------e~F~~mr~rg~~~aDiaILV-VDA~dGv~~Q-T~ 337 (742)
T CHL00189 283 ---------AYEVEFEY-KDENQKIVFLDTPGH-------------EAFSSMRSRGANVTDIAILI-IAADDGVKPQ-TI 337 (742)
T ss_pred ---------eEEEEEEe-cCCceEEEEEECCcH-------------HHHHHHHHHHHHHCCEEEEE-EECcCCCChh-hH
Confidence 00001110 011246999999993 35667777888989855555 4665443322 23
Q ss_pred HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..++.+...+.++|+|+||+|+..
T Consensus 338 E~I~~~k~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 338 EAINYIQAANVPIIVAINKIDKAN 361 (742)
T ss_pred HHHHHHHhcCceEEEEEECCCccc
Confidence 344445556789999999999975
No 176
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.80 E-value=5.4e-08 Score=91.38 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=25.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
++|+++|..++|||||+|+|++.. .|....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~ 31 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYK 31 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCC
Confidence 579999999999999999999987 455443
No 177
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.80 E-value=4.3e-08 Score=96.12 Aligned_cols=112 Identities=14% Similarity=0.174 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+++|.+++|||||+++|++..+.+.. +|-.+ .+.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~---~t~~~------------~~~--------------------------- 52 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTS---PTIGS------------NVE--------------------------- 52 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcC---Ccccc------------ceE---------------------------
Confidence 357999999999999999999887653211 11000 000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH-
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL- 205 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l- 205 (710)
.+.+. ...+.|+||||.. .+..+...|++.++.+|+++ +++....-..+.
T Consensus 53 ------------~~~~~---~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~vi~V~-D~s~~~~~~~~~~ 103 (174)
T cd04153 53 ------------EIVYK---NIRFLMWDIGGQE-------------SLRSSWNTYYTNTDAVILVI-DSTDRERLPLTKE 103 (174)
T ss_pred ------------EEEEC---CeEEEEEECCCCH-------------HHHHHHHHHhhcCCEEEEEE-ECCCHHHHHHHHH
Confidence 00110 1358999999943 34555667888998655555 444321111111
Q ss_pred ---HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 ---QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ---~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.+.+.......++++|+||+|+.+
T Consensus 104 ~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 104 ELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 122222223589999999999865
No 178
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.80 E-value=1.1e-07 Score=95.99 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP 74 (710)
+|+++|+.++|||||++.+++..|.+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~ 27 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG 27 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 59999999999999999999987643
No 179
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.79 E-value=4e-08 Score=98.68 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=43.7
Q ss_pred ccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCc-EEEeeccc
Q 005171 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKL 225 (710)
Q Consensus 147 ~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~r-tI~VlTK~ 225 (710)
...++||||||+. ..+. .+...+..+|+ +++|+++......++ ..+++.+...+.+ .|+|+||+
T Consensus 64 ~~~i~~iDtPG~~------------~~~~-~~~~~~~~~D~-~ilVvda~~g~~~~~-~~~~~~~~~~~~~~iIvviNK~ 128 (195)
T cd01884 64 NRHYAHVDCPGHA------------DYIK-NMITGAAQMDG-AILVVSATDGPMPQT-REHLLLARQVGVPYIVVFLNKA 128 (195)
T ss_pred CeEEEEEECcCHH------------HHHH-HHHHHhhhCCE-EEEEEECCCCCcHHH-HHHHHHHHHcCCCcEEEEEeCC
Confidence 3578999999963 1222 23455667874 555666666554443 3455555555665 78999999
Q ss_pred cccC
Q 005171 226 DIMD 229 (710)
Q Consensus 226 Dl~~ 229 (710)
|+++
T Consensus 129 D~~~ 132 (195)
T cd01884 129 DMVD 132 (195)
T ss_pred CCCC
Confidence 9985
No 180
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.79 E-value=3.5e-08 Score=101.03 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
+|+|||+.|+|||||++.+++..+
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~ 25 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEY 25 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCc
Confidence 699999999999999999987655
No 181
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.79 E-value=6e-08 Score=102.18 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=45.4
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..++||||||.. .+...+..++..++++| +|+++....... ...+.+.+...+.+.++|+||+|+
T Consensus 64 ~~i~liDtPG~~-------------~f~~~~~~~l~~aD~~i-~Vvd~~~g~~~~-~~~~~~~~~~~~~p~iivvNK~D~ 128 (268)
T cd04170 64 HKINLIDTPGYA-------------DFVGETRAALRAADAAL-VVVSAQSGVEVG-TEKLWEFADEAGIPRIIFINKMDR 128 (268)
T ss_pred EEEEEEECcCHH-------------HHHHHHHHHHHHCCEEE-EEEeCCCCCCHH-HHHHHHHHHHcCCCEEEEEECCcc
Confidence 479999999953 23345567788888544 555555443332 234445555567899999999999
Q ss_pred cCc
Q 005171 228 MDR 230 (710)
Q Consensus 228 ~~~ 230 (710)
...
T Consensus 129 ~~~ 131 (268)
T cd04170 129 ERA 131 (268)
T ss_pred CCC
Confidence 754
No 182
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.78 E-value=7.4e-08 Score=111.96 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=42.2
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCc-EEEeecccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~r-tI~VlTK~D 226 (710)
..++|||+||.. .+......++.+.+. +++|++++.+...+. ...+..+...+.+ .|+|+||+|
T Consensus 50 ~~v~~iDtPGhe-------------~f~~~~~~g~~~aD~-aILVVDa~~G~~~qT-~ehl~il~~lgi~~iIVVlNK~D 114 (581)
T TIGR00475 50 YRLGFIDVPGHE-------------KFISNAIAGGGGIDA-ALLVVDADEGVMTQT-GEHLAVLDLLGIPHTIVVITKAD 114 (581)
T ss_pred EEEEEEECCCHH-------------HHHHHHHhhhccCCE-EEEEEECCCCCcHHH-HHHHHHHHHcCCCeEEEEEECCC
Confidence 468999999932 333444567788884 555666665432222 2222223334566 999999999
Q ss_pred ccCc
Q 005171 227 IMDR 230 (710)
Q Consensus 227 l~~~ 230 (710)
+.+.
T Consensus 115 lv~~ 118 (581)
T TIGR00475 115 RVNE 118 (581)
T ss_pred CCCH
Confidence 9864
No 183
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.78 E-value=5e-08 Score=97.44 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=43.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---HHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l~la~~~dp~g~rtI~VlTK 224 (710)
..|.||||||- +..+.+...|++.++++||++. .+...+-.. ++..++...+ +.++|+|.||
T Consensus 55 ~~l~iwDt~G~-------------~~~~~l~~~~~~~ad~illVfD-~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK 119 (189)
T cd04121 55 VKLQLWDTSGQ-------------GRFCTIFRSYSRGAQGIILVYD-ITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNR 119 (189)
T ss_pred EEEEEEeCCCc-------------HHHHHHHHHHhcCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 46899999993 3566777889999986665554 332222222 2333333333 6899999999
Q ss_pred ccccC
Q 005171 225 LDIMD 229 (710)
Q Consensus 225 ~Dl~~ 229 (710)
.|+.+
T Consensus 120 ~DL~~ 124 (189)
T cd04121 120 LHLAF 124 (189)
T ss_pred ccchh
Confidence 99964
No 184
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.78 E-value=6.3e-08 Score=94.64 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
+|+++|+.++|||||+.++++..|
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~ 25 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998765
No 185
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.77 E-value=6.7e-08 Score=97.61 Aligned_cols=117 Identities=20% Similarity=0.309 Sum_probs=68.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
|.|+++|..+||||||++.|++..+.++-+. | .+. ...+. .
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s--~-~~~------------~~~~~-~----------------------- 41 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTS--I-EPN------------VATFI-L----------------------- 41 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCc--E-eec------------ceEEE-e-----------------------
Confidence 7899999999999999999998865222111 1 110 00000 0
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCC-CeEEEEEecCCCcccchHHHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQP-SCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~-~~iIL~V~~a~~d~~~~~~l~ 206 (710)
... .....+.||||||.. .++.+...|++.. +++|++|......-.-.++..
T Consensus 42 -------------~~~-~~~~~~~l~D~pG~~-------------~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~ 94 (203)
T cd04105 42 -------------NSE-GKGKKFRLVDVPGHP-------------KLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAE 94 (203)
T ss_pred -------------ecC-CCCceEEEEECCCCH-------------HHHHHHHHHHhccCCEEEEEEECccchhHHHHHHH
Confidence 000 011358999999943 3456677888888 766655554432111112111
Q ss_pred ----HHH--hhCCCCCcEEEeeccccccCc
Q 005171 207 ----IAG--IADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 207 ----la~--~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+.. .....+.++++|+||.|+...
T Consensus 95 ~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 95 FLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 111 122347899999999999754
No 186
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.76 E-value=1.7e-07 Score=92.59 Aligned_cols=114 Identities=16% Similarity=0.234 Sum_probs=69.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+|+|+.++|||||++.+++..| |.... +| ... .+.
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~-~t----~~~--------~~~----------------------------- 39 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETYV-PT----VFE--------NYT----------------------------- 39 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCcC-Cc----eEE--------EEE-----------------------------
Confidence 599999999999999999998876 33221 11 100 000
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccc--hHHH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN--SDAL 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~--~~~l 205 (710)
..+.+.+ ....+.||||||- +..+.+...|+++++++||+..-.+.. +.+ ..+.
T Consensus 40 ---------~~~~~~~-~~~~l~iwDt~G~-------------~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~ 96 (178)
T cd04131 40 ---------ASFEIDE-QRIELSLWDTSGS-------------PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWR 96 (178)
T ss_pred ---------EEEEECC-EEEEEEEEECCCc-------------hhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHH
Confidence 0111211 1246899999993 244556667899998666665433221 111 2233
Q ss_pred HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..++...+ ..++|+|.||+|+.+
T Consensus 97 ~~i~~~~~-~~~iilVgnK~DL~~ 119 (178)
T cd04131 97 GEIQEFCP-NTKVLLVGCKTDLRT 119 (178)
T ss_pred HHHHHHCC-CCCEEEEEEChhhhc
Confidence 34455554 578999999999964
No 187
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.75 E-value=4e-08 Score=104.06 Aligned_cols=139 Identities=17% Similarity=0.279 Sum_probs=75.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
.|+|||..|+|||||||+|++..+.+......+... . ..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~---~---~~----------------------------------- 44 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSA---S---IS----------------------------------- 44 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S-----------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccccccccccc---c---cc-----------------------------------
Confidence 599999999999999999999987655421110000 0 00
Q ss_pred CCCcccccceEEEEecC-CccceEEEeCCCCCcCCC-CCCchHHHHHHHHHHHHHhc-------------CCCeEEEEEe
Q 005171 129 GNKGVSDKQIRLKIFSP-HVLDITLVDLPGITKVPV-GEQPADIEARIRTMIMSYIK-------------QPSCLILAVT 193 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p-~~~~LtLVDtPGl~~~~~-~~q~~di~~~i~~lv~~yi~-------------~~~~iIL~V~ 193 (710)
....+. .....+... ...+|++|||||+.+.-. ......+...+.+....|+. +-+++++++.
T Consensus 45 ~~~~i~--~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~ 122 (281)
T PF00735_consen 45 RTLEIE--ERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIP 122 (281)
T ss_dssp SCEEEE--EEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-
T ss_pred ccccee--eEEEEeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEc
Confidence 000000 011111111 124799999999975421 12223343444444444543 2245666666
Q ss_pred cCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCccc
Q 005171 194 PANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 232 (710)
Q Consensus 194 ~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~ 232 (710)
|....+...| +...+++... .++|-|+.|+|.+.+.+
T Consensus 123 pt~~~L~~~D-i~~mk~Ls~~-vNvIPvIaKaD~lt~~e 159 (281)
T PF00735_consen 123 PTGHGLKPLD-IEFMKRLSKR-VNVIPVIAKADTLTPEE 159 (281)
T ss_dssp TTSSSS-HHH-HHHHHHHTTT-SEEEEEESTGGGS-HHH
T ss_pred CCCccchHHH-HHHHHHhccc-ccEEeEEecccccCHHH
Confidence 6667777767 6778888764 78999999999998654
No 188
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.74 E-value=1.3e-07 Score=110.02 Aligned_cols=132 Identities=14% Similarity=0.233 Sum_probs=74.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
...|++||..++|||||+++|+... +..+++. . +....|..+..+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~-------------~-------~~~~~D~~~~Er--------- 47 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYT------GAISERE-------------M-------REQVLDSMDLER--------- 47 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHc------CCCcccc-------------c-------cccccCCChHHH---------
Confidence 3469999999999999999998753 1111110 0 001111111100
Q ss_pred cCCCCcccccceEEEEe--cCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 127 AGGNKGVSDKQIRLKIF--SPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~--~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
..+..+....+.+... ......++||||||.. .+...+..|++.++++| +|+++......+..
T Consensus 48 -erGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~-------------dF~~~v~~~l~~aD~aI-LVvDat~g~~~qt~ 112 (595)
T TIGR01393 48 -ERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV-------------DFSYEVSRSLAACEGAL-LLVDAAQGIEAQTL 112 (595)
T ss_pred -hcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH-------------HHHHHHHHHHHhCCEEE-EEecCCCCCCHhHH
Confidence 0112233334444443 2223579999999964 34456678899998555 45566655443332
Q ss_pred HHHHHhhCCCCCcEEEeeccccccC
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..+.... ..+.++|+|+||+|+.+
T Consensus 113 ~~~~~~~-~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 113 ANVYLAL-ENDLEIIPVINKIDLPS 136 (595)
T ss_pred HHHHHHH-HcCCCEEEEEECcCCCc
Confidence 1221222 24678999999999864
No 189
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.74 E-value=2.3e-07 Score=92.60 Aligned_cols=116 Identities=20% Similarity=0.244 Sum_probs=69.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
..|+|+|+.++|||||+..++...| +... .+| ... .+.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~-~~t----~~~--------~~~---------------------------- 41 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEY-IPT----VFD--------NYS---------------------------- 41 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcCC-CCc----eEe--------eeE----------------------------
Confidence 4699999999999999999998776 2211 111 100 000
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccch--HH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LANS--DA 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~~--~~ 204 (710)
..+.+.+ ....+.||||||- +.++.+...|+++++++|+++.-.+.+ +.+. .+
T Consensus 42 ----------~~~~~~~-~~~~l~i~Dt~G~-------------e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w 97 (191)
T cd01875 42 ----------AQTAVDG-RTVSLNLWDTAGQ-------------EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKW 97 (191)
T ss_pred ----------EEEEECC-EEEEEEEEECCCc-------------hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0111111 1246899999993 356677778999999766665433322 1111 11
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
...++...+ +.++++|.||.|+.+.
T Consensus 98 ~~~i~~~~~-~~piilvgNK~DL~~~ 122 (191)
T cd01875 98 HPEVCHHCP-NVPILLVGTKKDLRND 122 (191)
T ss_pred HHHHHhhCC-CCCEEEEEeChhhhcC
Confidence 222233223 5899999999999643
No 190
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.73 E-value=7.7e-08 Score=98.50 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=46.5
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..+.||||||..+ +...+..+++.++++|| |+++......+. ..+++.+...+.+.|+|+||+|+
T Consensus 73 ~~i~iiDTPG~~~-------------f~~~~~~~l~~aD~~il-VvD~~~g~~~~t-~~~l~~~~~~~~p~ilviNKiD~ 137 (222)
T cd01885 73 YLINLIDSPGHVD-------------FSSEVTAALRLCDGALV-VVDAVEGVCVQT-ETVLRQALKERVKPVLVINKIDR 137 (222)
T ss_pred eEEEEECCCCccc-------------cHHHHHHHHHhcCeeEE-EEECCCCCCHHH-HHHHHHHHHcCCCEEEEEECCCc
Confidence 4689999999653 33456788899986655 455555544333 45555555567899999999998
Q ss_pred c
Q 005171 228 M 228 (710)
Q Consensus 228 ~ 228 (710)
.
T Consensus 138 ~ 138 (222)
T cd01885 138 L 138 (222)
T ss_pred c
Confidence 6
No 191
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.73 E-value=7.8e-08 Score=114.18 Aligned_cols=115 Identities=21% Similarity=0.258 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
..|.|+|+|..++|||||+++|.+..+.....+..|...
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~i----------------------------------------- 327 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHI----------------------------------------- 327 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeec-----------------------------------------
Confidence 568999999999999999999987765211111111000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
....+.+. ...++||||||.. .+..+..++....|.+|| |++++.....+. .
T Consensus 328 ----------ga~~v~~~---~~~ItfiDTPGhe-------------~F~~m~~rga~~aDiaIL-VVdAddGv~~qT-~ 379 (787)
T PRK05306 328 ----------GAYQVETN---GGKITFLDTPGHE-------------AFTAMRARGAQVTDIVVL-VVAADDGVMPQT-I 379 (787)
T ss_pred ----------cEEEEEEC---CEEEEEEECCCCc-------------cchhHHHhhhhhCCEEEE-EEECCCCCCHhH-H
Confidence 00011111 1358999999953 234555677888885555 456654432222 3
Q ss_pred HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..++.+...+.++|+|+||+|+..
T Consensus 380 e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 380 EAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred HHHHHHHhcCCcEEEEEECccccc
Confidence 344445556789999999999964
No 192
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.72 E-value=9.1e-08 Score=93.09 Aligned_cols=27 Identities=30% Similarity=0.687 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
.-.+|+|+|..+||||||+++|.|..+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~ 39 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI 39 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC
Confidence 357899999999999999999999754
No 193
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.72 E-value=1.5e-07 Score=109.91 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=41.5
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCc-EEEeecccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~r-tI~VlTK~D 226 (710)
..++||||||.. ..++++ ..++...|. +++|++++.....+. ...+..+...+.+ .|+|+||+|
T Consensus 51 ~~i~~IDtPGhe------------~fi~~m-~~g~~~~D~-~lLVVda~eg~~~qT-~ehl~il~~lgi~~iIVVlNKiD 115 (614)
T PRK10512 51 RVLGFIDVPGHE------------KFLSNM-LAGVGGIDH-ALLVVACDDGVMAQT-REHLAILQLTGNPMLTVALTKAD 115 (614)
T ss_pred cEEEEEECCCHH------------HHHHHH-HHHhhcCCE-EEEEEECCCCCcHHH-HHHHHHHHHcCCCeEEEEEECCc
Confidence 358999999942 233444 455778874 555667776554443 2233333333444 579999999
Q ss_pred ccCc
Q 005171 227 IMDR 230 (710)
Q Consensus 227 l~~~ 230 (710)
+.++
T Consensus 116 lv~~ 119 (614)
T PRK10512 116 RVDE 119 (614)
T ss_pred cCCH
Confidence 9853
No 194
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.72 E-value=5.6e-08 Score=112.65 Aligned_cols=116 Identities=21% Similarity=0.264 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
..|.|+++|..++|||||+++|.+..+.....+..|.-. +.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~i--------------g~------------------------- 126 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHI--------------GA------------------------- 126 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecc--------------eE-------------------------
Confidence 558999999999999999999998776332222111100 00
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
..+.+ ++...++||||||.. .+..+..++....|.+||+| +++.....+ ..
T Consensus 127 ------------~~v~~--~~~~~i~~iDTPGhe-------------~F~~~r~rga~~aDiaILVV-da~dgv~~q-T~ 177 (587)
T TIGR00487 127 ------------YHVEN--EDGKMITFLDTPGHE-------------AFTSMRARGAKVTDIVVLVV-AADDGVMPQ-TI 177 (587)
T ss_pred ------------EEEEE--CCCcEEEEEECCCCc-------------chhhHHHhhhccCCEEEEEE-ECCCCCCHh-HH
Confidence 01111 111268999999953 33445567788888555554 565443222 23
Q ss_pred HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..++.+...+.++|+|+||+|+.+
T Consensus 178 e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 178 EAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred HHHHHHHHcCCCEEEEEECccccc
Confidence 444445555789999999999964
No 195
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.71 E-value=4.9e-07 Score=91.64 Aligned_cols=121 Identities=18% Similarity=0.272 Sum_probs=78.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCC-CccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~-g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
-+|+|+|..|||||||+++|++..+..... .+.+..+....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~-------------------------------------- 47 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTI-------------------------------------- 47 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEE--------------------------------------
Confidence 479999999999999999999997632211 00111110000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc---cchH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---ANSD 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---~~~~ 203 (710)
........+.+|||+| .+.++.+...|...++++++++....... ....
T Consensus 48 ---------------~~~~~~~~~~~~Dt~g-------------q~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~ 99 (219)
T COG1100 48 ---------------EPYRRNIKLQLWDTAG-------------QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEE 99 (219)
T ss_pred ---------------EeCCCEEEEEeecCCC-------------HHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHH
Confidence 0000023589999999 44677888899999998887776554221 2222
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCccccH
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDRGTDA 234 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~ 234 (710)
+...++...+...+++.|.||+|+.+.....
T Consensus 100 ~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~ 130 (219)
T COG1100 100 WLEELRELAPDDVPILLVGNKIDLFDEQSSS 130 (219)
T ss_pred HHHHHHHhCCCCceEEEEecccccccchhHH
Confidence 3344455555568999999999998765433
No 196
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.70 E-value=1.2e-07 Score=97.23 Aligned_cols=114 Identities=13% Similarity=0.208 Sum_probs=68.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+|||+.++||||||+.+++..| |....++. .. .|.
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~pTi-~~------------~~~----------------------------- 39 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSYVPTV-FE------------NYT----------------------------- 39 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCccCCcc-cc------------ceE-----------------------------
Confidence 599999999999999999998876 33221111 00 010
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH----
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---- 204 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---- 204 (710)
..+.+.+ ....|.||||+|- +.+..+...|++..+++||++...+.+ +-..+
T Consensus 40 ---------~~~~~~~-~~v~L~iwDt~G~-------------e~~~~l~~~~~~~~d~illvfdis~~~-Sf~~i~~~w 95 (222)
T cd04173 40 ---------ASFEIDK-RRIELNMWDTSGS-------------SYYDNVRPLAYPDSDAVLICFDISRPE-TLDSVLKKW 95 (222)
T ss_pred ---------EEEEECC-EEEEEEEEeCCCc-------------HHHHHHhHHhccCCCEEEEEEECCCHH-HHHHHHHHH
Confidence 0111111 1246899999993 244556667899999666665433321 11111
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
....+...+ +.++|+|.||+|+.+.
T Consensus 96 ~~~~~~~~~-~~piiLVgnK~DL~~~ 120 (222)
T cd04173 96 QGETQEFCP-NAKVVLVGCKLDMRTD 120 (222)
T ss_pred HHHHHhhCC-CCCEEEEEECcccccc
Confidence 122233333 5799999999999653
No 197
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.69 E-value=9.4e-08 Score=97.14 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=43.7
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..+.||||||..+ +...+..++..++++|++| ++....... ...+.+.+...+.+.++|+||+|+
T Consensus 71 ~~i~iiDtpG~~~-------------f~~~~~~~~~~aD~~llVv-D~~~~~~~~-~~~~~~~~~~~~~p~iiviNK~D~ 135 (213)
T cd04167 71 YLFNIIDTPGHVN-------------FMDEVAAALRLSDGVVLVV-DVVEGVTSN-TERLIRHAILEGLPIVLVINKIDR 135 (213)
T ss_pred EEEEEEECCCCcc-------------hHHHHHHHHHhCCEEEEEE-ECCCCCCHH-HHHHHHHHHHcCCCEEEEEECccc
Confidence 5699999999652 2345667888888655555 554443322 233444444456899999999998
Q ss_pred c
Q 005171 228 M 228 (710)
Q Consensus 228 ~ 228 (710)
+
T Consensus 136 ~ 136 (213)
T cd04167 136 L 136 (213)
T ss_pred C
Confidence 6
No 198
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.68 E-value=1.2e-07 Score=94.12 Aligned_cols=115 Identities=16% Similarity=0.194 Sum_probs=71.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+|||+.++|||||++.+++..| +....+ |-.. .+.
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f-~~~~~p-T~~~------------~~~---------------------------- 43 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF-PENYVP-TVFE------------NYT---------------------------- 43 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCccCC-ceee------------eeE----------------------------
Confidence 3699999999999999999998876 222211 1000 000
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccc--hHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN--SDA 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~--~~~ 204 (710)
..+.+.+ ....|.||||+|- +.++.+...|+++++++||++.-.+.. +.+ ..+
T Consensus 44 ----------~~~~~~~-~~~~l~iwDtaG~-------------e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w 99 (182)
T cd04172 44 ----------ASFEIDT-QRIELSLWDTSGS-------------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 99 (182)
T ss_pred ----------EEEEECC-EEEEEEEEECCCc-------------hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0111111 1246899999992 355667778999999766665533321 221 123
Q ss_pred HHHHHhhCCCCCcEEEeeccccccC
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
...++...+ ..++|+|.||+|+.+
T Consensus 100 ~~~i~~~~~-~~piilVgNK~DL~~ 123 (182)
T cd04172 100 KGEIQEFCP-NTKMLLVGCKSDLRT 123 (182)
T ss_pred HHHHHHHCC-CCCEEEEeEChhhhc
Confidence 344455554 578999999999854
No 199
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=2.4e-07 Score=86.17 Aligned_cols=165 Identities=20% Similarity=0.244 Sum_probs=104.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
.|.|+|+.++||+|+|-..+|-.|-|.-.. .+ |
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvs---Tv----------------------G---------------------- 55 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVS---TV----------------------G---------------------- 55 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceee---ee----------------------e----------------------
Confidence 799999999999999999999987331000 00 0
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc--cchHHHH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL--ANSDALQ 206 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~--~~~~~l~ 206 (710)
+..++..+ ..+.....|.+|||.| .+..+.++..|++.+..+||+....|... +-+++..
T Consensus 56 ----idFKvKTv-yr~~kRiklQiwDTag-------------qEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~t 117 (193)
T KOG0093|consen 56 ----IDFKVKTV-YRSDKRIKLQIWDTAG-------------QERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWIT 117 (193)
T ss_pred ----eeEEEeEe-eecccEEEEEEEeccc-------------chhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHH
Confidence 00000000 0011124699999999 34688999999999999999976665432 2234445
Q ss_pred HHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceEEEEcCChhhhhhcccHHHHHHHHHHhccCCCccccc
Q 005171 207 IAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGL 286 (710)
Q Consensus 207 la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~~~~s~~~a~~~E~~fF~~~~~~~~~ 286 (710)
.++.+.-...++|+|.||||+-++..-.. +.+..+.+.+. -+||.+ +.
T Consensus 118 qIktysw~naqvilvgnKCDmd~eRvis~-------------------------e~g~~l~~~LG--fefFEt-----Sa 165 (193)
T KOG0093|consen 118 QIKTYSWDNAQVILVGNKCDMDSERVISH-------------------------ERGRQLADQLG--FEFFET-----SA 165 (193)
T ss_pred HheeeeccCceEEEEecccCCccceeeeH-------------------------HHHHHHHHHhC--hHHhhh-----cc
Confidence 55666666789999999999976532110 11122223222 357765 45
Q ss_pred cccCCchhHHHHHHHHHHHHHHhh
Q 005171 287 ADRCGVPQLAKKLNQILVQHIKAI 310 (710)
Q Consensus 287 ~~~~Gi~~L~~~L~~~L~~~i~~~ 310 (710)
+....++.+..+|-.++-+.+.++
T Consensus 166 K~NinVk~~Fe~lv~~Ic~kmses 189 (193)
T KOG0093|consen 166 KENINVKQVFERLVDIICDKMSES 189 (193)
T ss_pred cccccHHHHHHHHHHHHHHHhhhh
Confidence 567888888887777665544443
No 200
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.68 E-value=2.5e-07 Score=91.41 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=71.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
.|+|+|+.++|||||+..++...| +....++.. . .+
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~~Ti~-~------------~~------------------------------ 38 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVF-D------------NF------------------------------ 38 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCCcce-e------------ee------------------------------
Confidence 599999999999999999998876 222211110 0 00
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCC-cccch--HHH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS-DLANS--DAL 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~-d~~~~--~~l 205 (710)
...+.+.+ ....+.||||+|-. .++.+...|+++++++||+..-.+. .+.+. .++
T Consensus 39 --------~~~~~~~~-~~v~l~i~Dt~G~~-------------~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~ 96 (176)
T cd04133 39 --------SANVSVDG-NTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWV 96 (176)
T ss_pred --------EEEEEECC-EEEEEEEEECCCCc-------------cccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHH
Confidence 00112211 12479999999943 4455666799999977766543322 12221 233
Q ss_pred HHHHhhCCCCCcEEEeeccccccCc
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
..++...+ ..++|+|.||+|+.+.
T Consensus 97 ~~i~~~~~-~~piilvgnK~Dl~~~ 120 (176)
T cd04133 97 PELRHYAP-NVPIVLVGTKLDLRDD 120 (176)
T ss_pred HHHHHhCC-CCCEEEEEeChhhccC
Confidence 44444443 5899999999999753
No 201
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=5.9e-08 Score=94.83 Aligned_cols=119 Identities=18% Similarity=0.273 Sum_probs=81.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
+..|+|+|+.|+|||-|+-.+.+-.| +-...
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f-~e~~~------------------------------------------------ 39 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTF-TESYI------------------------------------------------ 39 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCc-chhhc------------------------------------------------
Confidence 56899999999999999999988775 11110
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCC-Ccccc-hHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN-SDLAN-SDA 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~-~d~~~-~~~ 204 (710)
...|+......+++.+... .|.+|||.| ++.++.++.+|.+++|.||++..-.. ..+.+ ..+
T Consensus 40 --sTIGVDf~~rt~e~~gk~i-KlQIWDTAG-------------QERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~W 103 (205)
T KOG0084|consen 40 --STIGVDFKIRTVELDGKTI-KLQIWDTAG-------------QERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRW 103 (205)
T ss_pred --ceeeeEEEEEEeeecceEE-EEEeeeccc-------------cHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHH
Confidence 1123344455666666554 799999999 57999999999999998777642211 11111 122
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++-.+.......+.+.|.||+|+.+.
T Consensus 104 i~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 104 IQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred HHHhhhhccCCCCeEEEeeccccHhh
Confidence 33333444456789999999999864
No 202
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.67 E-value=1.8e-07 Score=108.86 Aligned_cols=70 Identities=26% Similarity=0.331 Sum_probs=44.4
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~D 226 (710)
.+.+|||||..+..... .+ +.+...|+. .++ ++++|+++...- ..+.+..++...+.++++|+||+|
T Consensus 42 ~i~lvDtPG~~~~~~~s----~~---e~v~~~~l~~~~aD-vvI~VvDat~le---r~l~l~~ql~~~~~PiIIVlNK~D 110 (591)
T TIGR00437 42 DIEIVDLPGIYSLTTFS----LE---EEVARDYLLNEKPD-LVVNVVDASNLE---RNLYLTLQLLELGIPMILALNLVD 110 (591)
T ss_pred EEEEEECCCccccCccc----hH---HHHHHHHHhhcCCC-EEEEEecCCcch---hhHHHHHHHHhcCCCEEEEEehhH
Confidence 58999999986542111 11 123344554 455 677777776521 224555556566899999999999
Q ss_pred ccC
Q 005171 227 IMD 229 (710)
Q Consensus 227 l~~ 229 (710)
+.+
T Consensus 111 l~~ 113 (591)
T TIGR00437 111 EAE 113 (591)
T ss_pred HHH
Confidence 864
No 203
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.65 E-value=1.7e-07 Score=108.84 Aligned_cols=134 Identities=17% Similarity=0.227 Sum_probs=73.3
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhh
Q 005171 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (710)
Q Consensus 44 ~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (710)
.+.-|.|+++|..++|||||||+|.|..+.-...|..|+.. + ..+. +.+..
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~i------g-------~~~~--------~~~~~-------- 53 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHI------G-------ATEV--------PIDVI-------- 53 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEee------c-------eeec--------ccccc--------
Confidence 35679999999999999999999998754222222222110 0 0000 00000
Q ss_pred hhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 005171 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (710)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~ 203 (710)
....+ ... ..+..++. .+.++||||||.. .+..+...++..++. +++|+++......+.
T Consensus 54 ~~~~~--~~~--~~~~~~~~---~~~i~~iDTPG~e-------------~f~~~~~~~~~~aD~-~IlVvDa~~g~~~qt 112 (586)
T PRK04004 54 EKIAG--PLK--KPLPIKLK---IPGLLFIDTPGHE-------------AFTNLRKRGGALADI-AILVVDINEGFQPQT 112 (586)
T ss_pred ccccc--eec--cccccccc---cCCEEEEECCChH-------------HHHHHHHHhHhhCCE-EEEEEECCCCCCHhH
Confidence 00000 000 00001111 1358999999953 344555667788884 445556665433332
Q ss_pred HHHHHHhhCCCCCcEEEeecccccc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
...++.+...+.++++|+||+|+.
T Consensus 113 -~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 113 -IEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred -HHHHHHHHHcCCCEEEEEECcCCc
Confidence 333334444578999999999986
No 204
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.65 E-value=4.5e-07 Score=105.68 Aligned_cols=132 Identities=16% Similarity=0.254 Sum_probs=74.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
...|+|||..++|||||+++|+... |..+++. . +..+.|..+..++
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~t------g~i~~~~-------------~-------~~~~lD~~~~Ere-------- 52 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELT------GTLSERE-------------M-------KAQVLDSMDLERE-------- 52 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc------CCCcccc-------------c-------ccccccCchHHhh--------
Confidence 4579999999999999999998642 1111110 0 0111111111110
Q ss_pred cCCCCcccccceEEEEec--CCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 127 AGGNKGVSDKQIRLKIFS--PHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~--p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
.+..+....+.+.... .....++||||||.. .+...+.+|++.++++|| |+++......+..
T Consensus 53 --rGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~-------------dF~~~v~~sl~~aD~aIL-VVDas~gv~~qt~ 116 (600)
T PRK05433 53 --RGITIKAQAVRLNYKAKDGETYILNLIDTPGHV-------------DFSYEVSRSLAACEGALL-VVDASQGVEAQTL 116 (600)
T ss_pred --cCCcccccEEEEEEEccCCCcEEEEEEECCCcH-------------HHHHHHHHHHHHCCEEEE-EEECCCCCCHHHH
Confidence 1122333344444432 123468999999964 234556778888986554 5566655443332
Q ss_pred HHHHHhhCCCCCcEEEeeccccccC
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..+..+...+.++|+|+||+|+.+
T Consensus 117 -~~~~~~~~~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 117 -ANVYLALENDLEIIPVLNKIDLPA 140 (600)
T ss_pred -HHHHHHHHCCCCEEEEEECCCCCc
Confidence 222222234678999999999864
No 205
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.65 E-value=1.5e-07 Score=94.84 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=44.1
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l~la~~~dp~g~rtI~VlTK 224 (710)
..+.||||||- +.++.+...|+++++++|+++ +.....+-. .++..++... .+.++|+|.||
T Consensus 44 ~~l~iwDt~G~-------------e~~~~l~~~~~~~ad~~ilV~-D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK 108 (200)
T smart00176 44 IRFNVWDTAGQ-------------EKFGGLRDGYYIQGQCAIIMF-DVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNK 108 (200)
T ss_pred EEEEEEECCCc-------------hhhhhhhHHHhcCCCEEEEEE-ECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 46899999993 356777788999999666554 443322211 2233333433 36899999999
Q ss_pred ccccC
Q 005171 225 LDIMD 229 (710)
Q Consensus 225 ~Dl~~ 229 (710)
+|+..
T Consensus 109 ~Dl~~ 113 (200)
T smart00176 109 VDVKD 113 (200)
T ss_pred ccccc
Confidence 99853
No 206
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.65 E-value=1.4e-07 Score=112.04 Aligned_cols=135 Identities=15% Similarity=0.191 Sum_probs=78.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
.+..|+|+|..++|||||+|+|++..- . +... +... +|....|+....++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g------~-~~~~------~~~~----------~g~~~~D~~~~e~~------- 58 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTG------R-IHKI------GEVH----------DGAATMDWMEQEKE------- 58 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCC------C-cccc------cccc----------CCccccCCCHHHHh-------
Confidence 456899999999999999999986431 0 0000 0000 01122222221111
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
.+++-+.....+...+ ..++||||||..+- ...+..+++..|+ +++|+++......++ .
T Consensus 59 -----rgiti~~~~~~~~~~~-~~i~liDTPG~~~~-------------~~~~~~~l~~~D~-~ilVvda~~g~~~~~-~ 117 (689)
T TIGR00484 59 -----RGITITSAATTVFWKG-HRINIIDTPGHVDF-------------TVEVERSLRVLDG-AVAVLDAVGGVQPQS-E 117 (689)
T ss_pred -----cCCCEecceEEEEECC-eEEEEEECCCCcch-------------hHHHHHHHHHhCE-EEEEEeCCCCCChhH-H
Confidence 2233333333333332 47999999998632 1235677888884 555556665544433 4
Q ss_pred HHHHhhCCCCCcEEEeeccccccCcc
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
.+++.+...+.++++|+||+|+....
T Consensus 118 ~~~~~~~~~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 118 TVWRQANRYEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 55555666678999999999998543
No 207
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=3.5e-07 Score=90.63 Aligned_cols=121 Identities=17% Similarity=0.237 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
-.+-.|++||+.++|||++|-.+....|-+.-. . .
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~-------s-----------T--------------------------- 44 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFI-------S-----------T--------------------------- 44 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCcc-------c-----------e---------------------------
Confidence 346689999999999999999998877621110 0 0
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCC-cccc-h
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS-DLAN-S 202 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~-d~~~-~ 202 (710)
.++......+++.+ ....|.+|||.| ++.++.++..|++.+..++|++.-.+. .+.+ .
T Consensus 45 ------iGIDFk~kti~l~g-~~i~lQiWDtaG-------------Qerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~ 104 (207)
T KOG0078|consen 45 ------IGIDFKIKTIELDG-KKIKLQIWDTAG-------------QERFRTITTAYYRGAMGILLVYDITNEKSFENIR 104 (207)
T ss_pred ------EEEEEEEEEEEeCC-eEEEEEEEEccc-------------chhHHHHHHHHHhhcCeeEEEEEccchHHHHHHH
Confidence 11222222333333 224699999999 578999999999999977777654432 1222 2
Q ss_pred HHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 203 DALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 203 ~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+++.+++..+.+...++|.||+|+.++
T Consensus 105 ~W~~~I~e~a~~~v~~~LvGNK~D~~~~ 132 (207)
T KOG0078|consen 105 NWIKNIDEHASDDVVKILVGNKCDLEEK 132 (207)
T ss_pred HHHHHHHhhCCCCCcEEEeecccccccc
Confidence 3566777777788999999999999864
No 208
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1e-06 Score=82.03 Aligned_cols=121 Identities=18% Similarity=0.287 Sum_probs=87.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
-|..||+||.-++||+-|+..++.. ++|-|.|.+-..-
T Consensus 6 flfkivlvgnagvgktclvrrftqg-lfppgqgatigvd----------------------------------------- 43 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVD----------------------------------------- 43 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeee-----------------------------------------
Confidence 3678999999999999999999977 4587776422211
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEe-cCCCcc-cchH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVT-PANSDL-ANSD 203 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~-~a~~d~-~~~~ 203 (710)
.-...+++.+.. ..|.+|||.| ++.++.++.+|.+.++++||+.. .+...+ .-.+
T Consensus 44 ---------fmiktvev~gek-iklqiwdtag-------------qerfrsitqsyyrsahalilvydiscqpsfdclpe 100 (213)
T KOG0095|consen 44 ---------FMIKTVEVNGEK-IKLQIWDTAG-------------QERFRSITQSYYRSAHALILVYDISCQPSFDCLPE 100 (213)
T ss_pred ---------EEEEEEEECCeE-EEEEEeeccc-------------hHHHHHHHHHHhhhcceEEEEEecccCcchhhhHH
Confidence 112233443332 4699999999 67999999999999998888753 232222 3346
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
++.-+.++.....-.|.|-||+|+-+..
T Consensus 101 wlreie~yan~kvlkilvgnk~d~~drr 128 (213)
T KOG0095|consen 101 WLREIEQYANNKVLKILVGNKIDLADRR 128 (213)
T ss_pred HHHHHHHHhhcceEEEeeccccchhhhh
Confidence 6777777777677789999999998753
No 209
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.61 E-value=1.6e-07 Score=90.26 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=70.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
.|+|||+.++|||||++.+.+..| +....++.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~t~~~~~------------------------------------------- 36 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIPTIGIDS------------------------------------------- 36 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSETTSSEEE-------------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-cccccccccccc-------------------------------------------
Confidence 589999999999999999998875 322211110000
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hHHH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDAL 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~~l 205 (710)
....+.+. .....+.|||+||-. .+..+...++++.+++|++... +..-+- ..++
T Consensus 37 -------~~~~~~~~-~~~~~l~i~D~~g~~-------------~~~~~~~~~~~~~~~~ii~fd~-~~~~S~~~~~~~~ 94 (162)
T PF00071_consen 37 -------YSKEVSID-GKPVNLEIWDTSGQE-------------RFDSLRDIFYRNSDAIIIVFDV-TDEESFENLKKWL 94 (162)
T ss_dssp -------EEEEEEET-TEEEEEEEEEETTSG-------------GGHHHHHHHHTTESEEEEEEET-TBHHHHHTHHHHH
T ss_pred -------cccccccc-ccccccccccccccc-------------cccccccccccccccccccccc-ccccccccccccc
Confidence 00011111 112369999999943 2334455688899876666543 322111 1334
Q ss_pred HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..+....+...+.++|.||.|+.+
T Consensus 95 ~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 95 EEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HHHHHHSTTTSEEEEEEETTTGGG
T ss_pred ccccccccccccceeeeccccccc
Confidence 555566665689999999999976
No 210
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.60 E-value=5.8e-07 Score=89.24 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
+|+|+|+.++|||||++.|++..+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~ 26 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF 26 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 699999999999999999986554
No 211
>PRK00007 elongation factor G; Reviewed
Probab=98.59 E-value=2.7e-07 Score=109.75 Aligned_cols=135 Identities=15% Similarity=0.151 Sum_probs=79.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
+...|+|+|..++|||||+|+|+...--.+..|. . . .|....|+.....
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~------------v-~----------~~~~~~D~~~~E~-------- 57 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGE------------V-H----------DGAATMDWMEQEQ-------- 57 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCcccccc------------c-c----------CCcccCCCCHHHH--------
Confidence 4568999999999999999999843200000000 0 0 0111222222111
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
..+++-+...+.+... ...++||||||..+ ... -+...+...| .+++|+++......++ .
T Consensus 58 ----~rg~ti~~~~~~~~~~-~~~~~liDTPG~~~------------f~~-ev~~al~~~D-~~vlVvda~~g~~~qt-~ 117 (693)
T PRK00007 58 ----ERGITITSAATTCFWK-DHRINIIDTPGHVD------------FTI-EVERSLRVLD-GAVAVFDAVGGVEPQS-E 117 (693)
T ss_pred ----hCCCCEeccEEEEEEC-CeEEEEEeCCCcHH------------HHH-HHHHHHHHcC-EEEEEEECCCCcchhh-H
Confidence 1233333333333332 25799999999642 111 2556677777 5555666776665555 5
Q ss_pred HHHHhhCCCCCcEEEeeccccccCcc
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
.+++.+...+.+.|+|+||+|+.+..
T Consensus 118 ~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 118 TVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 67777777789999999999998643
No 212
>PRK12739 elongation factor G; Reviewed
Probab=98.59 E-value=2.5e-07 Score=109.96 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=79.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
.+..|+|||..++|||||+|+|+...--. +.. +... .|....|+.....
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~-------~~~------~~v~----------~~~~~~D~~~~E~-------- 55 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKS-------HKI------GEVH----------DGAATMDWMEQEQ-------- 55 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCc-------ccc------cccc----------CCccccCCChhHh--------
Confidence 45679999999999999999998642100 000 0000 0111222221111
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
..+++-+.....+.. ....++||||||+.+ +...+..++...| .+++|+++......++ .
T Consensus 56 ----~rgiti~~~~~~~~~-~~~~i~liDTPG~~~-------------f~~e~~~al~~~D-~~ilVvDa~~g~~~qt-~ 115 (691)
T PRK12739 56 ----ERGITITSAATTCFW-KGHRINIIDTPGHVD-------------FTIEVERSLRVLD-GAVAVFDAVSGVEPQS-E 115 (691)
T ss_pred ----hcCCCccceeEEEEE-CCEEEEEEcCCCHHH-------------HHHHHHHHHHHhC-eEEEEEeCCCCCCHHH-H
Confidence 122333332333333 235799999999642 2234677888888 5556667776665544 4
Q ss_pred HHHHhhCCCCCcEEEeeccccccCc
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+++.+...+.+.|+|+||+|+...
T Consensus 116 ~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 116 TVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCC
Confidence 6666666678999999999999854
No 213
>CHL00071 tufA elongation factor Tu
Probab=98.57 E-value=2.8e-07 Score=103.05 Aligned_cols=68 Identities=19% Similarity=0.173 Sum_probs=44.9
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCc-EEEeecccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~r-tI~VlTK~D 226 (710)
..++||||||.. ..+..+ ..-+..+| ++++|+++......++ ..++..+...+.+ .|+|+||+|
T Consensus 75 ~~~~~iDtPGh~------------~~~~~~-~~~~~~~D-~~ilVvda~~g~~~qt-~~~~~~~~~~g~~~iIvvvNK~D 139 (409)
T CHL00071 75 RHYAHVDCPGHA------------DYVKNM-ITGAAQMD-GAILVVSAADGPMPQT-KEHILLAKQVGVPNIVVFLNKED 139 (409)
T ss_pred eEEEEEECCChH------------HHHHHH-HHHHHhCC-EEEEEEECCCCCcHHH-HHHHHHHHHcCCCEEEEEEEccC
Confidence 468999999942 234444 34466777 5556667776665544 4445555555677 678999999
Q ss_pred ccCc
Q 005171 227 IMDR 230 (710)
Q Consensus 227 l~~~ 230 (710)
+.+.
T Consensus 140 ~~~~ 143 (409)
T CHL00071 140 QVDD 143 (409)
T ss_pred CCCH
Confidence 9864
No 214
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.57 E-value=2.6e-06 Score=91.83 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=28.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEE
Q 005171 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~ 86 (710)
|++||.+|+|||||+|+|++..+-....-.||..|.+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~ 37 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNV 37 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCcccccee
Confidence 5899999999999999999987533333347777754
No 215
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.56 E-value=6.6e-08 Score=105.72 Aligned_cols=149 Identities=18% Similarity=0.183 Sum_probs=89.0
Q ss_pred chHHHHHHHHHHHHHhCCCC--CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceee
Q 005171 24 SVIPLVNKLQDIFAQLGSQS--TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF 101 (710)
Q Consensus 24 ~l~~~~~kl~d~~~~~g~~~--~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~ 101 (710)
+..+.++-|.++.+.+..-. +...++++|||.+++||||++|.++-.+. +++-...+....+..+
T Consensus 143 ~q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-------------evqpYaFTTksL~vGH 209 (620)
T KOG1490|consen 143 RQKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-------------EVQPYAFTTKLLLVGH 209 (620)
T ss_pred HhcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-------------ccCCcccccchhhhhh
Confidence 33344455555544444333 45678999999999999999988875542 1111111111111111
Q ss_pred ecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHH
Q 005171 102 LHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSY 181 (710)
Q Consensus 102 ~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~y 181 (710)
..+ ....+.++|||||-+.+..+ ...++......
T Consensus 210 ~dy-----------------------------------------kYlrwQViDTPGILD~plEd-----rN~IEmqsITA 243 (620)
T KOG1490|consen 210 LDY-----------------------------------------KYLRWQVIDTPGILDRPEED-----RNIIEMQIITA 243 (620)
T ss_pred hhh-----------------------------------------heeeeeecCCccccCcchhh-----hhHHHHHHHHH
Confidence 100 12468999999998765443 22333333344
Q ss_pred hcCCCeEEEEEecCCC--cccchHHHHHHHhhCCC--CCcEEEeeccccccCcc
Q 005171 182 IKQPSCLILAVTPANS--DLANSDALQIAGIADPD--GYRTIGIITKLDIMDRG 231 (710)
Q Consensus 182 i~~~~~iIL~V~~a~~--d~~~~~~l~la~~~dp~--g~rtI~VlTK~Dl~~~~ 231 (710)
+.+-.+.+|++++-.. +.+-.+-++|...+.|. .+++|+|+||+|.+.+.
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE 297 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc
Confidence 5555567888776543 23333446778888875 78899999999999764
No 216
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.55 E-value=9.2e-07 Score=101.51 Aligned_cols=137 Identities=16% Similarity=0.197 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCc-cccChhHHHHHHHHhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGK-RFYDFSEIRREIQAQTD 124 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~-~~~d~~~i~~~i~~~t~ 124 (710)
....|+|||..++|||||+|+|+... |...+...+ ...+ . +. ...|+.++..+
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~------g~i~~~g~v---~~~~----~-------~~~~~~D~~~~E~~------ 62 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFG------GAIQEAGTV---KGRK----S-------GRHATSDWMEMEKQ------ 62 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC------CCcccccee---eccc----c-------CccccCCCcHHHHh------
Confidence 45679999999999999999997431 111111100 0000 0 00 11233322211
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
.+..+....+.+... ...++||||||.. .+...+..++...+++|++ +++......+ .
T Consensus 63 ----rgiSi~~~~~~~~~~---~~~inliDTPG~~-------------df~~~~~~~l~~aD~aIlV-vDa~~gv~~~-t 120 (526)
T PRK00741 63 ----RGISVTSSVMQFPYR---DCLINLLDTPGHE-------------DFSEDTYRTLTAVDSALMV-IDAAKGVEPQ-T 120 (526)
T ss_pred ----hCCceeeeeEEEEEC---CEEEEEEECCCch-------------hhHHHHHHHHHHCCEEEEE-EecCCCCCHH-H
Confidence 112233333333332 2469999999954 2334466788888865555 5555554333 2
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.++.+.....+.++|+|+||+|+...
T Consensus 121 ~~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 121 RKLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred HHHHHHHHhcCCCEEEEEECCccccc
Confidence 44555555568999999999998753
No 217
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.54 E-value=5.8e-08 Score=88.59 Aligned_cols=24 Identities=33% Similarity=0.747 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
+|+|+|+.++||||||++|++..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 599999999999999999999875
No 218
>PLN03127 Elongation factor Tu; Provisional
Probab=98.53 E-value=4.4e-07 Score=102.30 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=74.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
.-..|+++|..++|||||+++|+|..- ..+.. +. ..|... |. ..+|
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~-~~g~~----~~-----------~~~~~~---------D~--~~~E------- 105 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLA-EEGKA----KA-----------VAFDEI---------DK--APEE------- 105 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHH-Hhhcc----cc-----------eeeccc---------cC--ChhH-------
Confidence 334699999999999999999986420 11110 00 000000 00 0000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
...+++-+.....+... ...++||||||+.+ .+.+++.. +..+| ++++|++++.....++ .
T Consensus 106 ---~~rGiTi~~~~~~~~~~-~~~i~~iDtPGh~~------------f~~~~~~g-~~~aD-~allVVda~~g~~~qt-~ 166 (447)
T PLN03127 106 ---KARGITIATAHVEYETA-KRHYAHVDCPGHAD------------YVKNMITG-AAQMD-GGILVVSAPDGPMPQT-K 166 (447)
T ss_pred ---hhcCceeeeeEEEEcCC-CeEEEEEECCCccc------------hHHHHHHH-HhhCC-EEEEEEECCCCCchhH-H
Confidence 11334444444444443 24789999999742 44455433 34577 5666677776655444 4
Q ss_pred HHHHhhCCCCCc-EEEeeccccccC
Q 005171 206 QIAGIADPDGYR-TIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp~g~r-tI~VlTK~Dl~~ 229 (710)
+.+..+...+.+ .|+|+||+|+++
T Consensus 167 e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 167 EHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHHHHHcCCCeEEEEEEeeccCC
Confidence 455555555677 578899999985
No 219
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.53 E-value=2.4e-07 Score=94.65 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005171 50 VAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~ 70 (710)
|+++|..++|||||+++|+..
T Consensus 2 v~i~Gh~~~GKttL~~~ll~~ 22 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYL 22 (219)
T ss_pred EEEecCCCCChHHHHHHHHHH
Confidence 899999999999999999754
No 220
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.53 E-value=6.7e-07 Score=94.45 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=67.3
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc---cchHHHHHHHhh---CCC--CCcEEE
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---ANSDALQIAGIA---DPD--GYRTIG 220 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---~~~~~l~la~~~---dp~--g~rtI~ 220 (710)
.+++-|.||++..+..+ .-+. .--.++|.++. +++.|++....- .-.+...+..++ .+. .++.++
T Consensus 208 sfv~ADIPGLIEGAs~G--~GLG----~~FLrHIERt~-vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~iv 280 (369)
T COG0536 208 SFVVADIPGLIEGASEG--VGLG----LRFLRHIERTR-VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIV 280 (369)
T ss_pred cEEEecCcccccccccC--CCcc----HHHHHHHHhhh-eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEE
Confidence 58999999999775432 1111 12335677776 666666655221 122222333333 332 689999
Q ss_pred eeccccccCccccHHHHHhCCccccccceEEEEcCChhhhhhcccHHHHHHHHHHhccCCCc-cccccccCCchhHHHHH
Q 005171 221 IITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPV-YNGLADRCGVPQLAKKL 299 (710)
Q Consensus 221 VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~~~~s~~~a~~~E~~fF~~~~~-~~~~~~~~Gi~~L~~~L 299 (710)
|+||+|+....+.... +.+.+... +.+.+. |-+...+.|+..|...+
T Consensus 281 v~NKiD~~~~~e~~~~-----------------------------~~~~l~~~---~~~~~~~~ISa~t~~g~~~L~~~~ 328 (369)
T COG0536 281 VLNKIDLPLDEEELEE-----------------------------LKKALAEA---LGWEVFYLISALTREGLDELLRAL 328 (369)
T ss_pred EEeccCCCcCHHHHHH-----------------------------HHHHHHHh---cCCCcceeeehhcccCHHHHHHHH
Confidence 9999997654333211 11222211 112222 25566789999998888
Q ss_pred HHHHHHHH
Q 005171 300 NQILVQHI 307 (710)
Q Consensus 300 ~~~L~~~i 307 (710)
.+++.+..
T Consensus 329 ~~~l~~~~ 336 (369)
T COG0536 329 AELLEETK 336 (369)
T ss_pred HHHHHHhh
Confidence 88776553
No 221
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.53 E-value=7.5e-07 Score=96.80 Aligned_cols=166 Identities=17% Similarity=0.182 Sum_probs=91.4
Q ss_pred HHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccc
Q 005171 30 NKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF 109 (710)
Q Consensus 30 ~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~ 109 (710)
|-.+|+..+.|-.. .|.|||+.++|||||||++++.-+||.-.+.--|.-.. ++ -....+|++.
T Consensus 5 ~iykDIa~RT~G~I-----yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~---------DE--Lpqs~~GktI 68 (492)
T TIGR02836 5 DIYKDIAERTQGDI-----YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQ---------DE--LPQSAAGKTI 68 (492)
T ss_pred hHHHHHHHHhCCcE-----EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHH---------hc--cCcCCCCCCc
Confidence 44566666666432 39999999999999999999997766544211000000 00 0000112111
Q ss_pred cChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCC-CCCchHH---------------HHH
Q 005171 110 YDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPV-GEQPADI---------------EAR 173 (710)
Q Consensus 110 ~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~-~~q~~di---------------~~~ 173 (710)
+. -..+-+..+.+.+........++.|||++|+..... |....+- .+.
T Consensus 69 tT----------------TePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~A 132 (492)
T TIGR02836 69 MT----------------TEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEA 132 (492)
T ss_pred cc----------------CCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhh
Confidence 00 011122233444544433335799999999976543 2211110 111
Q ss_pred HHHHHHHHhc-CCCeEEEEEe-cCC------CcccchHHHHHHHhhCCCCCcEEEeeccccccC
Q 005171 174 IRTMIMSYIK-QPSCLILAVT-PAN------SDLANSDALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 174 i~~lv~~yi~-~~~~iIL~V~-~a~------~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.+==+++-|. +++ |-|+|+ ++. .+....+ .++..++...++|+|+|+||.|-..
T Consensus 133 AeiGT~kVI~dhst-IgivVtTDgsi~dI~Re~y~~aE-e~~i~eLk~~~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 133 AEIGTRKVIQEHST-IGVVVTTDGTITDIPREDYVEAE-ERVIEELKELNKPFIILLNSTHPYH 194 (492)
T ss_pred hhhhHHHHHHhcCc-EEEEEEcCCCccccccccchHHH-HHHHHHHHhcCCCEEEEEECcCCCC
Confidence 1111456677 554 666665 654 2333333 5678888888999999999999543
No 222
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=1.3e-06 Score=87.77 Aligned_cols=80 Identities=20% Similarity=0.360 Sum_probs=53.1
Q ss_pred cceEEEeCCCCCcCCCCCCc-hHHHHHHHHHHHHHhc--------------CCCeEEEEEecCCCcccchHHHHHHHhhC
Q 005171 148 LDITLVDLPGITKVPVGEQP-ADIEARIRTMIMSYIK--------------QPSCLILAVTPANSDLANSDALQIAGIAD 212 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~-~di~~~i~~lv~~yi~--------------~~~~iIL~V~~a~~d~~~~~~l~la~~~d 212 (710)
.+|+++||||+.+--..+.. +-|...+.+.-.+|++ +.+|+++++-+....+..-| +.+.+.+.
T Consensus 104 lkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplD-ieflkrLt 182 (336)
T KOG1547|consen 104 LKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLD-IEFLKRLT 182 (336)
T ss_pred EEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCccc-HHHHHHHh
Confidence 47999999999754332221 3344555555555654 23677888888778777776 45555554
Q ss_pred CCCCcEEEeeccccccC
Q 005171 213 PDGYRTIGIITKLDIMD 229 (710)
Q Consensus 213 p~g~rtI~VlTK~Dl~~ 229 (710)
. -..+|-|+-|.|.+.
T Consensus 183 ~-vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 183 E-VVNVVPVIAKADTLT 198 (336)
T ss_pred h-hheeeeeEeeccccc
Confidence 3 367899999999875
No 223
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.52 E-value=7.1e-07 Score=103.81 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=45.5
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..++||||||.. .+...+..+++.+|++||+| ++..+...+. ..+++.+...+.+.|+|+||+|+
T Consensus 64 ~kinlIDTPGh~-------------DF~~ev~~~l~~aD~alLVV-Da~~G~~~qT-~~~l~~a~~~~ip~IVviNKiD~ 128 (594)
T TIGR01394 64 TKINIVDTPGHA-------------DFGGEVERVLGMVDGVLLLV-DASEGPMPQT-RFVLKKALELGLKPIVVINKIDR 128 (594)
T ss_pred EEEEEEECCCHH-------------HHHHHHHHHHHhCCEEEEEE-eCCCCCcHHH-HHHHHHHHHCCCCEEEEEECCCC
Confidence 579999999953 34455678889998666555 5554443332 23344444457889999999998
Q ss_pred cCc
Q 005171 228 MDR 230 (710)
Q Consensus 228 ~~~ 230 (710)
.+.
T Consensus 129 ~~a 131 (594)
T TIGR01394 129 PSA 131 (594)
T ss_pred CCc
Confidence 643
No 224
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.51 E-value=2.4e-07 Score=104.09 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=45.3
Q ss_pred cccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCC--cccchH--HHHH
Q 005171 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS--DLANSD--ALQI 207 (710)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~--d~~~~~--~l~l 207 (710)
+++-+.....+... ...++||||||..+ .++.+ ...+..+| ++++|++++. ....+. .+.+
T Consensus 69 G~T~d~~~~~~~~~-~~~i~liDtpG~~~------------~~~~~-~~~~~~aD-~~ilVvDa~~~~~~~~~~~~~~~~ 133 (425)
T PRK12317 69 GVTIDLAHKKFETD-KYYFTIVDCPGHRD------------FVKNM-ITGASQAD-AAVLVVAADDAGGVMPQTREHVFL 133 (425)
T ss_pred CccceeeeEEEecC-CeEEEEEECCCccc------------chhhH-hhchhcCC-EEEEEEEcccCCCCCcchHHHHHH
Confidence 34444444444332 35799999999531 22222 23456787 4555566665 443332 2334
Q ss_pred HHhhCCCCCcEEEeeccccccC
Q 005171 208 AGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 208 a~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
++.+. ..++++|+||+|+.+
T Consensus 134 ~~~~~--~~~iivviNK~Dl~~ 153 (425)
T PRK12317 134 ARTLG--INQLIVAINKMDAVN 153 (425)
T ss_pred HHHcC--CCeEEEEEEcccccc
Confidence 44332 146899999999975
No 225
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.50 E-value=2.8e-07 Score=96.14 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=44.6
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc--ccchHHHH-HHHhhCC-----CCCcEEE
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD--LANSDALQ-IAGIADP-----DGYRTIG 220 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d--~~~~~~l~-la~~~dp-----~g~rtI~ 220 (710)
++++-|+|||+..+..+ .-+. --..+.|.+++ ++++|+|.+.. ....+.++ |..++.- ..++.++
T Consensus 245 q~tVADiPGiI~GAh~n--kGlG----~~FLrHiER~~-~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~li 317 (366)
T KOG1489|consen 245 QITVADIPGIIEGAHMN--KGLG----YKFLRHIERCK-GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALI 317 (366)
T ss_pred eeEeccCcccccccccc--Cccc----HHHHHHHHhhc-eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEE
Confidence 58999999999765322 1111 12235667777 67777777654 11122222 3333332 1467999
Q ss_pred eeccccccCc
Q 005171 221 IITKLDIMDR 230 (710)
Q Consensus 221 VlTK~Dl~~~ 230 (710)
|+||+|+.+.
T Consensus 318 VaNKiD~~ea 327 (366)
T KOG1489|consen 318 VANKIDLPEA 327 (366)
T ss_pred EEeccCchhH
Confidence 9999999743
No 226
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.49 E-value=9e-07 Score=98.85 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=49.0
Q ss_pred cccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH--HHHHHH
Q 005171 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--ALQIAG 209 (710)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--~l~la~ 209 (710)
+++-+.....+..+ ...++||||||.. ..+.++. .-+..+| ++|+|+++......+. .+.+++
T Consensus 65 giTid~~~~~~~~~-~~~~~liDtPGh~------------~f~~~~~-~~~~~aD-~allVVda~~G~~~qt~~~~~~~~ 129 (406)
T TIGR02034 65 GITIDVAYRYFSTD-KRKFIVADTPGHE------------QYTRNMA-TGASTAD-LAVLLVDARKGVLEQTRRHSYIAS 129 (406)
T ss_pred CcCeEeeeEEEccC-CeEEEEEeCCCHH------------HHHHHHH-HHHhhCC-EEEEEEECCCCCccccHHHHHHHH
Confidence 34444333334333 3479999999942 2334443 3466777 4555666766654433 344555
Q ss_pred hhCCCCCcEEEeeccccccCcc
Q 005171 210 IADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 210 ~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
.+. ..+.|+|+||+|+.+..
T Consensus 130 ~~~--~~~iivviNK~D~~~~~ 149 (406)
T TIGR02034 130 LLG--IRHVVLAVNKMDLVDYD 149 (406)
T ss_pred HcC--CCcEEEEEEecccccch
Confidence 543 24688899999998643
No 227
>PLN00023 GTP-binding protein; Provisional
Probab=98.49 E-value=6.3e-07 Score=95.79 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
....+|+|||+.++|||||++.+++..|
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F 46 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSS 46 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCc
Confidence 4556899999999999999999998876
No 228
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.46 E-value=1.1e-06 Score=90.32 Aligned_cols=67 Identities=19% Similarity=0.414 Sum_probs=42.6
Q ss_pred ccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCc-EEEeeccc
Q 005171 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKL 225 (710)
Q Consensus 147 ~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~r-tI~VlTK~ 225 (710)
...++++||||.. ..+ ...+..++ ++++|+++.......+ ..+...+...+.+ +|+|+||+
T Consensus 82 ~~~i~~vDtPg~~---------------~~~-l~~ak~aD-vVllviDa~~~~~~~~-~~i~~~l~~~g~p~vi~VvnK~ 143 (225)
T cd01882 82 KRRLTFIECPNDI---------------NAM-IDIAKVAD-LVLLLIDASFGFEMET-FEFLNILQVHGFPRVMGVLTHL 143 (225)
T ss_pred CceEEEEeCCchH---------------HHH-HHHHHhcC-EEEEEEecCcCCCHHH-HHHHHHHHHcCCCeEEEEEecc
Confidence 3468999999832 111 22345666 6777777776665544 3455555445566 55699999
Q ss_pred cccCcc
Q 005171 226 DIMDRG 231 (710)
Q Consensus 226 Dl~~~~ 231 (710)
|++++.
T Consensus 144 D~~~~~ 149 (225)
T cd01882 144 DLFKKN 149 (225)
T ss_pred ccCCcH
Confidence 998543
No 229
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.45 E-value=4.7e-07 Score=95.38 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=29.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEE
Q 005171 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~ 86 (710)
|++||.+|+|||||+|+|+|...-......||+-|..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~ 37 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV 37 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhcee
Confidence 5799999999999999999998633334557766643
No 230
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.45 E-value=1e-06 Score=103.87 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=41.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--HHHHHHHhhCCCCCcEEEeeccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~~l~la~~~dp~g~rtI~VlTK~ 225 (710)
..++||||||.. .....++. .+..+| ++++|+++......+ +.+.+++.+. .++.|+|+||+
T Consensus 104 ~~~~liDtPG~~------------~f~~~~~~-~~~~aD-~~llVvda~~g~~~~t~e~~~~~~~~~--~~~iivvvNK~ 167 (632)
T PRK05506 104 RKFIVADTPGHE------------QYTRNMVT-GASTAD-LAIILVDARKGVLTQTRRHSFIASLLG--IRHVVLAVNKM 167 (632)
T ss_pred ceEEEEECCChH------------HHHHHHHH-HHHhCC-EEEEEEECCCCccccCHHHHHHHHHhC--CCeEEEEEEec
Confidence 478999999942 23334433 466777 556667776555433 2344555442 15688899999
Q ss_pred cccC
Q 005171 226 DIMD 229 (710)
Q Consensus 226 Dl~~ 229 (710)
|+.+
T Consensus 168 D~~~ 171 (632)
T PRK05506 168 DLVD 171 (632)
T ss_pred cccc
Confidence 9985
No 231
>PRK12736 elongation factor Tu; Reviewed
Probab=98.45 E-value=9.4e-07 Score=98.34 Aligned_cols=68 Identities=21% Similarity=0.214 Sum_probs=42.2
Q ss_pred ccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCc-EEEeeccc
Q 005171 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKL 225 (710)
Q Consensus 147 ~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~r-tI~VlTK~ 225 (710)
...++||||||.. +.+.+++ .-+..+| ++++|+++......++ ...+..+...+.+ .|+|+||+
T Consensus 74 ~~~i~~iDtPGh~------------~f~~~~~-~~~~~~d-~~llVvd~~~g~~~~t-~~~~~~~~~~g~~~~IvviNK~ 138 (394)
T PRK12736 74 KRHYAHVDCPGHA------------DYVKNMI-TGAAQMD-GAILVVAATDGPMPQT-REHILLARQVGVPYLVVFLNKV 138 (394)
T ss_pred CcEEEEEECCCHH------------HHHHHHH-HHHhhCC-EEEEEEECCCCCchhH-HHHHHHHHHcCCCEEEEEEEec
Confidence 3578999999932 2344443 3345677 4555666766544433 3444444445676 67889999
Q ss_pred cccC
Q 005171 226 DIMD 229 (710)
Q Consensus 226 Dl~~ 229 (710)
|+.+
T Consensus 139 D~~~ 142 (394)
T PRK12736 139 DLVD 142 (394)
T ss_pred CCcc
Confidence 9975
No 232
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.43 E-value=6.1e-07 Score=92.14 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=55.2
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEE--EEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLI--LAVTPANSDLANSDALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iI--L~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~ 225 (710)
..+++||+||+.....+. +..+.+.+++..|+.+-..++ ++.+++...+..-| ...+..+...+.+..+|+|||
T Consensus 183 ~~~~~vDlPG~~~a~y~~---~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D-~~~i~~~ge~~VP~t~vfTK~ 258 (320)
T KOG2486|consen 183 KSWYEVDLPGYGRAGYGF---ELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTD-NPEIAWLGENNVPMTSVFTKC 258 (320)
T ss_pred ceEEEEecCCcccccCCc---cCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCC-hHHHHHHhhcCCCeEEeeehh
Confidence 368999999976654442 223456688888887554332 33456666666666 456667777789999999999
Q ss_pred cccCc
Q 005171 226 DIMDR 230 (710)
Q Consensus 226 Dl~~~ 230 (710)
|.+..
T Consensus 259 DK~k~ 263 (320)
T KOG2486|consen 259 DKQKK 263 (320)
T ss_pred hhhhh
Confidence 99854
No 233
>PTZ00258 GTP-binding protein; Provisional
Probab=98.43 E-value=8.9e-07 Score=97.38 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEE
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQ 88 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~ 88 (710)
..-.+|++||.+|+|||||+|+|++..........||+-|..-.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~ 62 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTAR 62 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEE
Confidence 34568999999999999999999998753334455777775433
No 234
>PRK10218 GTP-binding protein; Provisional
Probab=98.43 E-value=5.1e-07 Score=104.93 Aligned_cols=68 Identities=19% Similarity=0.201 Sum_probs=45.0
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..+.||||||.. .+...+..|++.++++||+ +++......+. ...++.+...+.+.|+|+||+|+
T Consensus 68 ~~inliDTPG~~-------------df~~~v~~~l~~aDg~ILV-VDa~~G~~~qt-~~~l~~a~~~gip~IVviNKiD~ 132 (607)
T PRK10218 68 YRINIVDTPGHA-------------DFGGEVERVMSMVDSVLLV-VDAFDGPMPQT-RFVTKKAFAYGLKPIVVINKVDR 132 (607)
T ss_pred EEEEEEECCCcc-------------hhHHHHHHHHHhCCEEEEE-EecccCccHHH-HHHHHHHHHcCCCEEEEEECcCC
Confidence 579999999964 2334567789999866555 45554433332 23333334457889999999998
Q ss_pred cCc
Q 005171 228 MDR 230 (710)
Q Consensus 228 ~~~ 230 (710)
...
T Consensus 133 ~~a 135 (607)
T PRK10218 133 PGA 135 (607)
T ss_pred CCC
Confidence 643
No 235
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.42 E-value=3.6e-06 Score=81.45 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
+|+|||+.++|||||+..+++..|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f 25 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY 25 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 599999999999999999887766
No 236
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.42 E-value=8.1e-07 Score=80.79 Aligned_cols=31 Identities=29% Similarity=0.552 Sum_probs=27.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
.+|++||..|+||+||.++|-|.+.+++.+.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQ 32 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQ 32 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcccc
Confidence 4799999999999999999999998776653
No 237
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.41 E-value=9.3e-07 Score=85.38 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=36.3
Q ss_pred CCcchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCC
Q 005171 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (710)
Q Consensus 21 ~~~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~ 77 (710)
-+..+-.+++.|.+.++.. ..-.-..|+++|.+|+|||||+|+|.|...++++.
T Consensus 79 ~~~~~~~L~~~l~~~~~~~---~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~ 132 (157)
T cd01858 79 NPFGKGSLIQLLRQFSKLH---SDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAP 132 (157)
T ss_pred ccccHHHHHHHHHHHHhhh---ccccceEEEEEeCCCCChHHHHHHHhcCCceeeCC
Confidence 3445556666666554321 11112368899999999999999999987665554
No 238
>PRK13351 elongation factor G; Reviewed
Probab=98.41 E-value=1.7e-06 Score=103.14 Aligned_cols=134 Identities=14% Similarity=0.143 Sum_probs=76.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
....|+|+|..++|||||+++|+...-.....+. + ..|....|+.....+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~-------v----------------~~~~~~~d~~~~e~~------- 56 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGE-------V----------------EDGTTVTDWMPQEQE------- 56 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCcccccc-------c----------------cCCcccCCCCHHHHh-------
Confidence 3567999999999999999999854210000000 0 001111222221100
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
.+..+......+... ...++||||||.. .+...+..+++..+++|| |+++......+. .
T Consensus 57 ---r~~ti~~~~~~~~~~---~~~i~liDtPG~~-------------df~~~~~~~l~~aD~~il-Vvd~~~~~~~~~-~ 115 (687)
T PRK13351 57 ---RGITIESAATSCDWD---NHRINLIDTPGHI-------------DFTGEVERSLRVLDGAVV-VFDAVTGVQPQT-E 115 (687)
T ss_pred ---cCCCcccceEEEEEC---CEEEEEEECCCcH-------------HHHHHHHHHHHhCCEEEE-EEeCCCCCCHHH-H
Confidence 111222233333332 3579999999964 234566788898986555 555554443322 3
Q ss_pred HHHHhhCCCCCcEEEeeccccccCc
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+.+.+...+.+.++|+||+|+...
T Consensus 116 ~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 116 TVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHhcCCCEEEEEECCCCCCC
Confidence 4445555567899999999998754
No 239
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.41 E-value=8.1e-06 Score=82.88 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=38.9
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---HHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l~la~~~dp~g~rtI~VlTK 224 (710)
..+.++||||-. .+..+...|+...+++|++ .+.+...+-... +..+.... ...++++|.||
T Consensus 58 i~i~~~Dt~g~~-------------~~~~~~~~~~~~~~~~i~v-~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK 122 (215)
T PTZ00132 58 ICFNVWDTAGQE-------------KFGGLRDGYYIKGQCAIIM-FDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNK 122 (215)
T ss_pred EEEEEEECCCch-------------hhhhhhHHHhccCCEEEEE-EECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 358899999932 3344556788888755554 444432222221 22222222 24778899999
Q ss_pred ccccC
Q 005171 225 LDIMD 229 (710)
Q Consensus 225 ~Dl~~ 229 (710)
+|+.+
T Consensus 123 ~Dl~~ 127 (215)
T PTZ00132 123 VDVKD 127 (215)
T ss_pred ccCcc
Confidence 99864
No 240
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.41 E-value=2.4e-06 Score=95.42 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=39.9
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc-cc--hHHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL-AN--SDALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~-~~--~~~l~la~~~dp~g~rtI~VlTK 224 (710)
..++||||||.. .+......++..+|. +++|+++.... .. .+.+.+++.+. .++.++|+||
T Consensus 80 ~~i~liDtPGh~-------------~f~~~~~~g~~~aD~-aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK 143 (406)
T TIGR03680 80 RRVSFVDAPGHE-------------TLMATMLSGAALMDG-ALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNK 143 (406)
T ss_pred cEEEEEECCCHH-------------HHHHHHHHHHHHCCE-EEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEc
Confidence 368999999932 222334555667774 55555666543 22 22233333332 2568999999
Q ss_pred ccccCc
Q 005171 225 LDIMDR 230 (710)
Q Consensus 225 ~Dl~~~ 230 (710)
+|+.+.
T Consensus 144 ~Dl~~~ 149 (406)
T TIGR03680 144 IDLVSK 149 (406)
T ss_pred cccCCH
Confidence 999864
No 241
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.40 E-value=2.3e-06 Score=98.34 Aligned_cols=67 Identities=12% Similarity=0.146 Sum_probs=44.2
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..+.||||||.. .+...+..++..++++|++| ++...+..+. ..+.+.....+.++|+|+||+|+
T Consensus 80 ~~inliDTPG~~-------------df~~~~~~~l~~aD~aIlVv-Da~~gv~~~t-~~l~~~~~~~~~PiivviNKiD~ 144 (527)
T TIGR00503 80 CLVNLLDTPGHE-------------DFSEDTYRTLTAVDNCLMVI-DAAKGVETRT-RKLMEVTRLRDTPIFTFMNKLDR 144 (527)
T ss_pred eEEEEEECCChh-------------hHHHHHHHHHHhCCEEEEEE-ECCCCCCHHH-HHHHHHHHhcCCCEEEEEECccc
Confidence 579999999963 23344567888898666554 5554433322 33444444457899999999998
Q ss_pred cC
Q 005171 228 MD 229 (710)
Q Consensus 228 ~~ 229 (710)
..
T Consensus 145 ~~ 146 (527)
T TIGR00503 145 DI 146 (527)
T ss_pred cC
Confidence 64
No 242
>PRK12735 elongation factor Tu; Reviewed
Probab=98.39 E-value=1.6e-06 Score=96.49 Aligned_cols=67 Identities=22% Similarity=0.206 Sum_probs=42.2
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEE-Eeecccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTI-GIITKLD 226 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI-~VlTK~D 226 (710)
..++||||||.. ..+..++ .-+..+| ++++|+++......+. .+.+..+...+.+.| +|+||+|
T Consensus 75 ~~i~~iDtPGh~------------~f~~~~~-~~~~~aD-~~llVvda~~g~~~qt-~e~l~~~~~~gi~~iivvvNK~D 139 (396)
T PRK12735 75 RHYAHVDCPGHA------------DYVKNMI-TGAAQMD-GAILVVSAADGPMPQT-REHILLARQVGVPYIVVFLNKCD 139 (396)
T ss_pred cEEEEEECCCHH------------HHHHHHH-hhhccCC-EEEEEEECCCCCchhH-HHHHHHHHHcCCCeEEEEEEecC
Confidence 468999999952 2334443 4456777 5555666665554443 344444545567755 5799999
Q ss_pred ccC
Q 005171 227 IMD 229 (710)
Q Consensus 227 l~~ 229 (710)
+.+
T Consensus 140 l~~ 142 (396)
T PRK12735 140 MVD 142 (396)
T ss_pred Ccc
Confidence 985
No 243
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.39 E-value=9.8e-07 Score=98.22 Aligned_cols=130 Identities=17% Similarity=0.232 Sum_probs=70.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
-.|+++|..++|||||+++|++.- ...+.+ +...+. ..+...+|.
T Consensus 13 ~~i~i~Ghvd~GKStL~~~L~~~~-~~~g~~---------------~~~~~~-----------~~d~~~~E~-------- 57 (394)
T TIGR00485 13 VNIGTIGHVDHGKTTLTAAITTVL-AKEGGA---------------AARAYD-----------QIDNAPEEK-------- 57 (394)
T ss_pred EEEEEEeecCCCHHHHHHHHHhhH-HHhhcc---------------cccccc-----------cccCCHHHH--------
Confidence 359999999999999999998651 111110 000000 000001111
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (710)
..+++-+...+.+... ...++||||||.. ..+.++ ...+..+|. +++|+++......+. .+.
T Consensus 58 --~rG~Ti~~~~~~~~~~-~~~~~liDtpGh~------------~f~~~~-~~~~~~~D~-~ilVvda~~g~~~qt-~e~ 119 (394)
T TIGR00485 58 --ARGITINTAHVEYETE-NRHYAHVDCPGHA------------DYVKNM-ITGAAQMDG-AILVVSATDGPMPQT-REH 119 (394)
T ss_pred --hcCcceeeEEEEEcCC-CEEEEEEECCchH------------HHHHHH-HHHHhhCCE-EEEEEECCCCCcHHH-HHH
Confidence 1233444444444432 3468999999953 133333 334456774 445666765544433 344
Q ss_pred HHhhCCCCCcEE-EeeccccccCc
Q 005171 208 AGIADPDGYRTI-GIITKLDIMDR 230 (710)
Q Consensus 208 a~~~dp~g~rtI-~VlTK~Dl~~~ 230 (710)
+..+...+.+.+ +|+||+|+++.
T Consensus 120 l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 120 ILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHcCCCEEEEEEEecccCCH
Confidence 444444466655 68999999863
No 244
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.39 E-value=2e-06 Score=97.76 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=43.5
Q ss_pred ccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--HHHHHHHhhCCCCCcEEEeecc
Q 005171 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 147 ~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~~l~la~~~dp~g~rtI~VlTK 224 (710)
...++||||||.. ...++++.. +..+| ++|+|++++.....+ +.+.++..+. -.++|+|+||
T Consensus 106 ~~~i~~iDTPGh~------------~f~~~~~~~-l~~aD-~allVVDa~~G~~~qt~~~~~l~~~lg--~~~iIvvvNK 169 (474)
T PRK05124 106 KRKFIIADTPGHE------------QYTRNMATG-ASTCD-LAILLIDARKGVLDQTRRHSFIATLLG--IKHLVVAVNK 169 (474)
T ss_pred CcEEEEEECCCcH------------HHHHHHHHH-HhhCC-EEEEEEECCCCccccchHHHHHHHHhC--CCceEEEEEe
Confidence 3579999999932 234445444 57777 556666777655433 2344555543 2468899999
Q ss_pred ccccCc
Q 005171 225 LDIMDR 230 (710)
Q Consensus 225 ~Dl~~~ 230 (710)
+|+.+.
T Consensus 170 iD~~~~ 175 (474)
T PRK05124 170 MDLVDY 175 (474)
T ss_pred eccccc
Confidence 999853
No 245
>PRK00049 elongation factor Tu; Reviewed
Probab=98.39 E-value=1.6e-06 Score=96.44 Aligned_cols=67 Identities=22% Similarity=0.206 Sum_probs=42.5
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEE-Eeecccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTI-GIITKLD 226 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI-~VlTK~D 226 (710)
..++||||||.. ..+.++. ..+..+| ++++|+++......++ ..++..+...+.+.+ +|+||+|
T Consensus 75 ~~i~~iDtPG~~------------~f~~~~~-~~~~~aD-~~llVVDa~~g~~~qt-~~~~~~~~~~g~p~iiVvvNK~D 139 (396)
T PRK00049 75 RHYAHVDCPGHA------------DYVKNMI-TGAAQMD-GAILVVSAADGPMPQT-REHILLARQVGVPYIVVFLNKCD 139 (396)
T ss_pred eEEEEEECCCHH------------HHHHHHH-hhhccCC-EEEEEEECCCCCchHH-HHHHHHHHHcCCCEEEEEEeecC
Confidence 468999999953 2334443 4467787 5555666765554433 344444444567765 6899999
Q ss_pred ccC
Q 005171 227 IMD 229 (710)
Q Consensus 227 l~~ 229 (710)
+++
T Consensus 140 ~~~ 142 (396)
T PRK00049 140 MVD 142 (396)
T ss_pred Ccc
Confidence 985
No 246
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=1.6e-06 Score=93.36 Aligned_cols=84 Identities=19% Similarity=0.332 Sum_probs=57.2
Q ss_pred cceEEEeCCCCCcCCCCCCc-hHHHHHHHHHHHHHhc-------------CCCeEEEEEecCCCcccchHHHHHHHhhCC
Q 005171 148 LDITLVDLPGITKVPVGEQP-ADIEARIRTMIMSYIK-------------QPSCLILAVTPANSDLANSDALQIAGIADP 213 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~-~di~~~i~~lv~~yi~-------------~~~~iIL~V~~a~~d~~~~~~l~la~~~dp 213 (710)
.+||+|||||+.+.-..... .-+...+.+.-.+|+. +.+|.++++.|....+..-| +.+.+.+..
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D-i~~Mk~l~~ 157 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD-IEFMKKLSK 157 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh-HHHHHHHhc
Confidence 47999999999765322211 2233344455555654 34677888888888888877 455666653
Q ss_pred CCCcEEEeeccccccCcccc
Q 005171 214 DGYRTIGIITKLDIMDRGTD 233 (710)
Q Consensus 214 ~g~rtI~VlTK~Dl~~~~~~ 233 (710)
...+|-|+.|.|.+.+.+.
T Consensus 158 -~vNiIPVI~KaD~lT~~El 176 (366)
T KOG2655|consen 158 -KVNLIPVIAKADTLTKDEL 176 (366)
T ss_pred -cccccceeeccccCCHHHH
Confidence 4789999999999987653
No 247
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.38 E-value=1.5e-06 Score=94.52 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccC-CCccccceE
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRG-NDICTRRPL 85 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~-~g~~Tr~p~ 85 (710)
.+|++||.+|+|||||+|+|+|... .++ ...||+-|.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~nypftTi~p~ 40 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPN 40 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-eecccccccccce
Confidence 5799999999999999999999874 333 345776664
No 248
>PLN03126 Elongation factor Tu; Provisional
Probab=98.38 E-value=2e-06 Score=97.65 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=42.9
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCc-EEEeecccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~r-tI~VlTK~D 226 (710)
..++||||||.. +.+.++ ..-+..+|++ ++|+++......+. .+.+..+...|.+ .|+|+||+|
T Consensus 144 ~~i~liDtPGh~------------~f~~~~-~~g~~~aD~a-ilVVda~~G~~~qt-~e~~~~~~~~gi~~iIvvvNK~D 208 (478)
T PLN03126 144 RHYAHVDCPGHA------------DYVKNM-ITGAAQMDGA-ILVVSGADGPMPQT-KEHILLAKQVGVPNMVVFLNKQD 208 (478)
T ss_pred cEEEEEECCCHH------------HHHHHH-HHHHhhCCEE-EEEEECCCCCcHHH-HHHHHHHHHcCCCeEEEEEeccc
Confidence 478999999953 234444 3445577744 45666665554433 3344444444666 778999999
Q ss_pred ccCc
Q 005171 227 IMDR 230 (710)
Q Consensus 227 l~~~ 230 (710)
+.+.
T Consensus 209 l~~~ 212 (478)
T PLN03126 209 QVDD 212 (478)
T ss_pred ccCH
Confidence 9863
No 249
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.37 E-value=3e-06 Score=90.53 Aligned_cols=83 Identities=18% Similarity=0.278 Sum_probs=57.2
Q ss_pred cceEEEeCCCCCcCCCCCCc-hHHHHHHHHHHHHHhc--------------CCCeEEEEEecCCCcccchHHHHHHHhhC
Q 005171 148 LDITLVDLPGITKVPVGEQP-ADIEARIRTMIMSYIK--------------QPSCLILAVTPANSDLANSDALQIAGIAD 212 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~-~di~~~i~~lv~~yi~--------------~~~~iIL~V~~a~~d~~~~~~l~la~~~d 212 (710)
.+|++|||||+.+.-..... .-+...+.+....|+. +.+|+++++-|..+.+...| +.+.+.+.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~D-Ie~Mk~ls 160 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLD-IEAMKRLS 160 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHH-HHHHHHHh
Confidence 47999999999765322211 2344455555555654 23567777778888888877 56677776
Q ss_pred CCCCcEEEeeccccccCccc
Q 005171 213 PDGYRTIGIITKLDIMDRGT 232 (710)
Q Consensus 213 p~g~rtI~VlTK~Dl~~~~~ 232 (710)
. ....|-||.|.|.+...+
T Consensus 161 ~-~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 161 K-RVNLIPVIAKADTLTDDE 179 (373)
T ss_pred c-ccCeeeeeeccccCCHHH
Confidence 5 478999999999997654
No 250
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.33 E-value=7.7e-07 Score=87.69 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=43.6
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHh-hC---CCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGI-AD---PDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~-~d---p~g~rtI~VlT 223 (710)
..++++|++|=. .++.+...|+.+.+++|++| |+...-.-.++...+.. +. -.+.|+++++|
T Consensus 58 ~~~~~~d~gG~~-------------~~~~~w~~y~~~~~~iIfVv-Dssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~N 123 (175)
T PF00025_consen 58 YSLTIWDLGGQE-------------SFRPLWKSYFQNADGIIFVV-DSSDPERLQEAKEELKELLNDPELKDIPILILAN 123 (175)
T ss_dssp EEEEEEEESSSG-------------GGGGGGGGGHTTESEEEEEE-ETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEE
T ss_pred EEEEEEeccccc-------------cccccceeeccccceeEEEE-ecccceeecccccchhhhcchhhcccceEEEEec
Confidence 368999999932 35566778999998655555 44432222333332222 22 23689999999
Q ss_pred cccccCc
Q 005171 224 KLDIMDR 230 (710)
Q Consensus 224 K~Dl~~~ 230 (710)
|.|+.+.
T Consensus 124 K~D~~~~ 130 (175)
T PF00025_consen 124 KQDLPDA 130 (175)
T ss_dssp STTSTTS
T ss_pred cccccCc
Confidence 9998754
No 251
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.30 E-value=3.8e-06 Score=100.61 Aligned_cols=133 Identities=14% Similarity=0.196 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
....|+|+|..++|||||+++|+... |..++.- . .+....|+....++ .
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~~-----~--------------g~~~~~D~~~~E~~--r---- 67 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEEL-----A--------------GEQLALDFDEEEQA--R---- 67 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchhh-----c--------------CcceecCccHHHHH--h----
Confidence 56779999999999999999998542 1111100 0 00112233221111 0
Q ss_pred hcCCCCcccccceEEEEecC-CccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSP-HVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p-~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
+..+....+.+..... ....++||||||..+ +...+...++..|++|+ |+++......+.
T Consensus 68 ----giTi~~~~~~~~~~~~~~~~~i~liDtPG~~d-------------f~~~~~~~l~~~D~avl-Vvda~~g~~~~t- 128 (731)
T PRK07560 68 ----GITIKAANVSMVHEYEGKEYLINLIDTPGHVD-------------FGGDVTRAMRAVDGAIV-VVDAVEGVMPQT- 128 (731)
T ss_pred ----hhhhhccceEEEEEecCCcEEEEEEcCCCccC-------------hHHHHHHHHHhcCEEEE-EEECCCCCCccH-
Confidence 1112223333333111 234689999999763 22345567788885555 555665544433
Q ss_pred HHHHHhhCCCCCcEEEeecccccc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
..+++.+...+.+.|+|+||+|+.
T Consensus 129 ~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 129 ETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHHHHHHcCCCeEEEEECchhh
Confidence 344444444467789999999986
No 252
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.30 E-value=4.7e-06 Score=77.69 Aligned_cols=118 Identities=20% Similarity=0.207 Sum_probs=74.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
|....++|++++|||||+-.+..-.| .-+.-.++
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtF-s~sYitTi--------------------------------------------- 41 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTF-SGSYITTI--------------------------------------------- 41 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhccc-ccceEEEe---------------------------------------------
Confidence 44567899999999999988876654 11111111
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEe--cCCCcccchHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVT--PANSDLANSDA 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~--~a~~d~~~~~~ 204 (710)
|+...+..+.|.|.. ..|.||||.| ++.++.++..|.+.++.+|++.. .+...-.-+.+
T Consensus 42 -----GvDfkirTv~i~G~~-VkLqIwDtAG-------------qErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rW 102 (198)
T KOG0079|consen 42 -----GVDFKIRTVDINGDR-VKLQIWDTAG-------------QERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRW 102 (198)
T ss_pred -----eeeEEEEEeecCCcE-EEEEEeeccc-------------HHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHH
Confidence 122223344444332 4699999999 67999999999999997666632 22222222333
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++-++.-.+ ..+-+.|.||.|.-+.
T Consensus 103 Leei~~ncd-sv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 103 LEEIRNNCD-SVPKVLVGNKNDDPER 127 (198)
T ss_pred HHHHHhcCc-cccceecccCCCCccc
Confidence 444443333 4677899999998654
No 253
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.29 E-value=3.9e-06 Score=100.21 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=44.9
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..+.||||||..+- ...+..+++.+|++|++ +++......+. ..+++.+...+.+.++|+||+|.
T Consensus 86 ~~i~liDTPG~~~f-------------~~~~~~al~~aD~~llV-vda~~g~~~~t-~~~~~~~~~~~~p~ivviNKiD~ 150 (720)
T TIGR00490 86 YLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVV-VCAVEGVMPQT-ETVLRQALKENVKPVLFINKVDR 150 (720)
T ss_pred eEEEEEeCCCcccc-------------HHHHHHHHHhcCEEEEE-EecCCCCCccH-HHHHHHHHHcCCCEEEEEEChhc
Confidence 57999999997632 23456788889865555 45555443332 34455554456788999999999
Q ss_pred cC
Q 005171 228 MD 229 (710)
Q Consensus 228 ~~ 229 (710)
..
T Consensus 151 ~~ 152 (720)
T TIGR00490 151 LI 152 (720)
T ss_pred cc
Confidence 64
No 254
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.29 E-value=3.4e-06 Score=84.72 Aligned_cols=66 Identities=18% Similarity=0.059 Sum_probs=39.7
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccch--HHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LANS--DALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~~--~~l~la~~~dp~g~rtI~VlTK 224 (710)
..|.||||+|... .+...|+++++++||+..-.+.. +.+. .++..++...+ ..++|+|.||
T Consensus 66 v~l~iwDTaG~~~---------------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK 129 (195)
T cd01873 66 VSLRLWDTFGDHD---------------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCK 129 (195)
T ss_pred EEEEEEeCCCChh---------------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence 4689999999531 12234888998666655433321 2211 12333444333 5789999999
Q ss_pred ccccC
Q 005171 225 LDIMD 229 (710)
Q Consensus 225 ~Dl~~ 229 (710)
+|+.+
T Consensus 130 ~DL~~ 134 (195)
T cd01873 130 LDLRY 134 (195)
T ss_pred hhccc
Confidence 99965
No 255
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.29 E-value=8.6e-06 Score=79.20 Aligned_cols=128 Identities=17% Similarity=0.216 Sum_probs=77.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
..-..|+|+|.+++||+|++.++..... +.-....+.. .+. ++
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~-v~t~~~~~~~-------------s~k------~k----------------- 50 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPL-VITEADASSV-------------SGK------GK----------------- 50 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhcccc-ceeecccccc-------------ccc------cc-----------------
Confidence 4457899999999999999999998752 1111110000 000 00
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
....+.-+.-.+++++. ..+.|+|||| +..++-|..-+.+.+..+|++|.++. +... .+
T Consensus 51 ----r~tTva~D~g~~~~~~~--~~v~LfgtPG-------------q~RF~fm~~~l~~ga~gaivlVDss~-~~~~-~a 109 (187)
T COG2229 51 ----RPTTVAMDFGSIELDED--TGVHLFGTPG-------------QERFKFMWEILSRGAVGAIVLVDSSR-PITF-HA 109 (187)
T ss_pred ----cceeEeecccceEEcCc--ceEEEecCCC-------------cHHHHHHHHHHhCCcceEEEEEecCC-Ccch-HH
Confidence 00111111112222221 3589999999 45778888889999887777776543 2222 44
Q ss_pred HHHHHhhCCCC-CcEEEeeccccccCc
Q 005171 205 LQIAGIADPDG-YRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp~g-~rtI~VlTK~Dl~~~ 230 (710)
..+...+.... .+.++.+||.|+.+.
T Consensus 110 ~~ii~f~~~~~~ip~vVa~NK~DL~~a 136 (187)
T COG2229 110 EEIIDFLTSRNPIPVVVAINKQDLFDA 136 (187)
T ss_pred HHHHHHHhhccCCCEEEEeeccccCCC
Confidence 55555554444 899999999999864
No 256
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.29 E-value=3.1e-06 Score=95.24 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=45.1
Q ss_pred cccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc---ccch--HHHH
Q 005171 132 GVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD---LANS--DALQ 206 (710)
Q Consensus 132 ~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d---~~~~--~~l~ 206 (710)
+++-+.....+.... ..++||||||.. ..+.. ...++..++.+||+ +++... ...+ +.+.
T Consensus 70 g~Tid~~~~~~~~~~-~~i~iiDtpGh~------------~f~~~-~~~~~~~aD~~ilV-vDa~~~~~~~~~~t~~~~~ 134 (426)
T TIGR00483 70 GVTIDVAHWKFETDK-YEVTIVDCPGHR------------DFIKN-MITGASQADAAVLV-VAVGDGEFEVQPQTREHAF 134 (426)
T ss_pred CceEEEEEEEEccCC-eEEEEEECCCHH------------HHHHH-HHhhhhhCCEEEEE-EECCCCCcccCCchHHHHH
Confidence 334344344444333 479999999932 12333 34466788855555 455443 2221 1123
Q ss_pred HHHhhCCCCCcEEEeeccccccC
Q 005171 207 IAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 207 la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
+++.+. ..++|+|+||+|+.+
T Consensus 135 ~~~~~~--~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 135 LARTLG--INQLIVAINKMDSVN 155 (426)
T ss_pred HHHHcC--CCeEEEEEEChhccC
Confidence 444442 257889999999975
No 257
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.28 E-value=6.9e-06 Score=91.87 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
-.|+|+|..++|||||+++|+|.
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCe
Confidence 35999999999999999999775
No 258
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.28 E-value=1.6e-06 Score=81.92 Aligned_cols=115 Identities=23% Similarity=0.252 Sum_probs=75.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
.-.|.+||+.++||||||-.++...|=|-.. |
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~---~--------------------------------------------- 42 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHP---T--------------------------------------------- 42 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCC---c---------------------------------------------
Confidence 4679999999999999999998876622211 0
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCC-CcccchHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN-SDLANSDAL 205 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~-~d~~~~~~l 205 (710)
..++...+..+.|.+.. ..|.||||.| ++.+|.++-.|.+.+..+||+..-.. ..+.+-+
T Consensus 43 ---tIGvDFkvk~m~vdg~~-~KlaiWDTAG-------------qErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd-- 103 (209)
T KOG0080|consen 43 ---TIGVDFKVKVMQVDGKR-LKLAIWDTAG-------------QERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLD-- 103 (209)
T ss_pred ---eeeeeEEEEEEEEcCce-EEEEEEeccc-------------hHhhhccCHhHhccCceeEEEEEccchhhHHhHH--
Confidence 01222233344444433 4699999999 67999999999999998887743222 2233333
Q ss_pred HHHHhhCCC----CCcEEEeecccccc
Q 005171 206 QIAGIADPD----GYRTIGIITKLDIM 228 (710)
Q Consensus 206 ~la~~~dp~----g~rtI~VlTK~Dl~ 228 (710)
..++++|-. ..-.+.|.||+|.-
T Consensus 104 ~W~~Eld~Ystn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 104 IWLKELDLYSTNPDIIKMLVGNKIDKE 130 (209)
T ss_pred HHHHHHHhhcCCccHhHhhhcccccch
Confidence 245566543 23356788999964
No 259
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=8.8e-06 Score=78.99 Aligned_cols=120 Identities=19% Similarity=0.256 Sum_probs=77.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
-+-.++++|+.++|||.||-..+...|.|.-.. .+-+ +++.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~-----TiGv---------efg~------------------------- 45 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDL-----TIGV---------EFGA------------------------- 45 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccc-----eeee---------eece-------------------------
Confidence 345789999999999999999999999665431 1101 1111
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc--cchH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL--ANSD 203 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~--~~~~ 203 (710)
..+.|.+. ...|.+|||.| .+.++.++.+|.+.+...||+..-.+.+. .-..
T Consensus 46 ------------r~~~id~k-~IKlqiwDtaG-------------qe~frsv~~syYr~a~GalLVydit~r~sF~hL~~ 99 (216)
T KOG0098|consen 46 ------------RMVTIDGK-QIKLQIWDTAG-------------QESFRSVTRSYYRGAAGALLVYDITRRESFNHLTS 99 (216)
T ss_pred ------------eEEEEcCc-eEEEEEEecCC-------------cHHHHHHHHHHhccCcceEEEEEccchhhHHHHHH
Confidence 01111111 13589999999 46889999999999887777643322221 1222
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++.-+++.....--++++.||+|+...
T Consensus 100 wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 100 WLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred HHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 344455554445667788899999754
No 260
>PTZ00416 elongation factor 2; Provisional
Probab=98.27 E-value=3.8e-06 Score=101.74 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=46.9
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..++|+||||..+ +..-+...++..|++ ++|+++...+..+. ..+++.+...+.+.|+|+||+|+
T Consensus 92 ~~i~liDtPG~~~-------------f~~~~~~al~~~D~a-ilVvda~~g~~~~t-~~~~~~~~~~~~p~iv~iNK~D~ 156 (836)
T PTZ00416 92 FLINLIDSPGHVD-------------FSSEVTAALRVTDGA-LVVVDCVEGVCVQT-ETVLRQALQERIRPVLFINKVDR 156 (836)
T ss_pred eEEEEEcCCCHHh-------------HHHHHHHHHhcCCeE-EEEEECCCCcCccH-HHHHHHHHHcCCCEEEEEEChhh
Confidence 3589999999752 222245667888855 45666776666554 46667777677899999999999
Q ss_pred c
Q 005171 228 M 228 (710)
Q Consensus 228 ~ 228 (710)
.
T Consensus 157 ~ 157 (836)
T PTZ00416 157 A 157 (836)
T ss_pred h
Confidence 7
No 261
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.26 E-value=2.7e-06 Score=84.76 Aligned_cols=45 Identities=31% Similarity=0.431 Sum_probs=34.3
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 20 PLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 20 ~~~~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
.-+..+-++++.|.+.+. .-.++++||.+|+|||||+|+|++...
T Consensus 108 ~~~~gi~eL~~~l~~~l~--------~~~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 108 KKGWGVEELINAIKKLAK--------KGGDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CCCCCHHHHHHHHHHHhh--------cCCcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 345667677777766543 224699999999999999999998764
No 262
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.26 E-value=1.2e-06 Score=91.99 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=23.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
-|+++||-+|+|||||||+|+|.+-
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~s 88 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKS 88 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCc
Confidence 4799999999999999999999863
No 263
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.25 E-value=5.3e-06 Score=100.69 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=45.7
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..++||||||..+ .+.+ +...++.+|+.||+ ++|......+. ..+.+.+...+.++|+++||+|+
T Consensus 98 ~~inliDtPGh~d------------F~~e-~~~al~~~D~ailV-vda~~Gv~~~t-~~~~~~~~~~~~p~i~~iNK~D~ 162 (843)
T PLN00116 98 YLINLIDSPGHVD------------FSSE-VTAALRITDGALVV-VDCIEGVCVQT-ETVLRQALGERIRPVLTVNKMDR 162 (843)
T ss_pred eEEEEECCCCHHH------------HHHH-HHHHHhhcCEEEEE-EECCCCCcccH-HHHHHHHHHCCCCEEEEEECCcc
Confidence 4579999999631 2223 35566778865555 45666655444 45667777778999999999999
Q ss_pred c
Q 005171 228 M 228 (710)
Q Consensus 228 ~ 228 (710)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 7
No 264
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=1.6e-06 Score=84.62 Aligned_cols=115 Identities=16% Similarity=0.209 Sum_probs=68.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
.||++|+.|+|||||+..++-..|.+. ..++ ..+.|+
T Consensus 7 KvvLLG~~~VGKSSlV~Rfvk~~F~e~-~e~T----------------IGaaF~-------------------------- 43 (200)
T KOG0092|consen 7 KVVLLGDSGVGKSSLVLRFVKDQFHEN-IEPT----------------IGAAFL-------------------------- 43 (200)
T ss_pred EEEEECCCCCCchhhhhhhhhCccccc-cccc----------------cccEEE--------------------------
Confidence 599999999999999999998887332 1111 111111
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIA 208 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la 208 (710)
...+.+.. ....+.+|||.|- +....+..-|.++++++||+. +.+..-+=..+....
T Consensus 44 --------tktv~~~~-~~ikfeIWDTAGQ-------------ERy~slapMYyRgA~AAivvY-Dit~~~SF~~aK~Wv 100 (200)
T KOG0092|consen 44 --------TKTVTVDD-NTIKFEIWDTAGQ-------------ERYHSLAPMYYRGANAAIVVY-DITDEESFEKAKNWV 100 (200)
T ss_pred --------EEEEEeCC-cEEEEEEEEcCCc-------------ccccccccceecCCcEEEEEE-ecccHHHHHHHHHHH
Confidence 11111111 1245889999993 456677778999999766664 333222222222333
Q ss_pred HhhCCCC---CcEEEeeccccccC
Q 005171 209 GIADPDG---YRTIGIITKLDIMD 229 (710)
Q Consensus 209 ~~~dp~g---~rtI~VlTK~Dl~~ 229 (710)
+++.... .-+.+|.||+|+.+
T Consensus 101 keL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 101 KELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred HHHHhhCCCCeEEEEecchhhhhh
Confidence 4443332 33445889999987
No 265
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.24 E-value=1.8e-06 Score=84.97 Aligned_cols=31 Identities=32% Similarity=0.332 Sum_probs=26.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~ 77 (710)
..+|+|||.+|+|||||+|+|+|....+++.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~ 147 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGA 147 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecC
Confidence 3589999999999999999999987666654
No 266
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.23 E-value=2.3e-06 Score=82.51 Aligned_cols=40 Identities=35% Similarity=0.337 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccce
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRP 84 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p 84 (710)
...++|+++|.+|+|||||+|+|++...++++.+ .+|+.+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~ 138 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ 138 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce
Confidence 4568899999999999999999999876565554 344444
No 267
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.22 E-value=2e-06 Score=84.90 Aligned_cols=118 Identities=20% Similarity=0.313 Sum_probs=61.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
-|.|+++|..+||||+|+..|+...+.++ +|...-.. +..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T----~tS~e~n~-----------~~~------------------------- 42 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT----VTSMENNI-----------AYN------------------------- 42 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B-------SSEEE-----------ECC-------------------------
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCe----eccccCCc-----------eEE-------------------------
Confidence 47899999999999999999997754222 11110000 000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc-chHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA-NSDAL 205 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~-~~~~l 205 (710)
+..+....+.|||+||..+.. ...+..+ .|+..+.+||++|.+ ..+.. -.++.
T Consensus 43 ---------------~~~~~~~~~~lvD~PGH~rlr--------~~~~~~~--~~~~~~k~IIfvvDS-s~~~~~~~~~A 96 (181)
T PF09439_consen 43 ---------------VNNSKGKKLRLVDIPGHPRLR--------SKLLDEL--KYLSNAKGIIFVVDS-STDQKELRDVA 96 (181)
T ss_dssp ---------------GSSTCGTCECEEEETT-HCCC--------HHHHHHH--HHHGGEEEEEEEEET-TTHHHHHHHHH
T ss_pred ---------------eecCCCCEEEEEECCCcHHHH--------HHHHHhh--hchhhCCEEEEEEeC-ccchhhHHHHH
Confidence 011223468999999976552 1112221 268888766665554 33211 11111
Q ss_pred ----HHH--HhhCCCCCcEEEeeccccccCc
Q 005171 206 ----QIA--GIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 206 ----~la--~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.++ ....+.+.|+++++||.|+...
T Consensus 97 e~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 97 EYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred HHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 111 2334668999999999999764
No 268
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.18 E-value=8.3e-06 Score=90.54 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=31.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEE
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~ 86 (710)
.+|++||.+|+|||||+|+|++..+.......||+.|..
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999987643344557777754
No 269
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.18 E-value=3.4e-06 Score=80.00 Aligned_cols=25 Identities=40% Similarity=0.680 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFL 73 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~l 73 (710)
.++++|.+|+|||||+|+|+|..++
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~ 109 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV 109 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce
Confidence 7999999999999999999998754
No 270
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.15 E-value=8.5e-06 Score=78.32 Aligned_cols=67 Identities=15% Similarity=0.262 Sum_probs=45.1
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH-HHHHHhhCC--CCCcEEEeeccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-LQIAGIADP--DGYRTIGIITKL 225 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-l~la~~~dp--~g~rtI~VlTK~ 225 (710)
.+.+|||.| ++.+..++..|.+.+.+-+|+.+..+ -..-++ +.+-+++.. ...|+++|-||+
T Consensus 70 r~mlWdtag-------------qeEfDaItkAyyrgaqa~vLVFSTTD--r~SFea~~~w~~kv~~e~~~IPtV~vqNKI 134 (246)
T KOG4252|consen 70 RSMLWDTAG-------------QEEFDAITKAYYRGAQASVLVFSTTD--RYSFEATLEWYNKVQKETERIPTVFVQNKI 134 (246)
T ss_pred HHHHHHhcc-------------chhHHHHHHHHhccccceEEEEeccc--HHHHHHHHHHHHHHHHHhccCCeEEeeccc
Confidence 367899999 45778888999999987777665332 221122 222233322 258999999999
Q ss_pred cccCc
Q 005171 226 DIMDR 230 (710)
Q Consensus 226 Dl~~~ 230 (710)
|+++.
T Consensus 135 Dlved 139 (246)
T KOG4252|consen 135 DLVED 139 (246)
T ss_pred hhhHh
Confidence 99965
No 271
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.12 E-value=2.4e-05 Score=74.24 Aligned_cols=69 Identities=20% Similarity=0.327 Sum_probs=43.3
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-cc-chHHHHHHH-hhC-CCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LA-NSDALQIAG-IAD-PDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~-~~~~l~la~-~~d-p~g~rtI~VlT 223 (710)
..|.||||.| ++.++.++++|.++.-.++|+..-.|.. +. -.++++-|. .+. |...-...|-+
T Consensus 58 iklqlwdtag-------------qerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGh 124 (213)
T KOG0091|consen 58 IKLQLWDTAG-------------QERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGH 124 (213)
T ss_pred EEEEEeeccc-------------hHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEecc
Confidence 4699999999 6799999999999997655554333321 11 112232222 233 44344557789
Q ss_pred cccccC
Q 005171 224 KLDIMD 229 (710)
Q Consensus 224 K~Dl~~ 229 (710)
|+|+..
T Consensus 125 KsDL~S 130 (213)
T KOG0091|consen 125 KSDLQS 130 (213)
T ss_pred ccchhh
Confidence 999973
No 272
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.12 E-value=4.4e-06 Score=77.89 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=49.5
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc---cchHHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---ANSDALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---~~~~~l~la~~~dp~g~rtI~VlTK 224 (710)
..+.++|+|| +..++.|...|.+..++|+++|.+|+.+- +.++...++..-.-.|.+.++..||
T Consensus 65 vtiklwD~gG-------------q~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK 131 (186)
T KOG0075|consen 65 VTIKLWDLGG-------------QPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNK 131 (186)
T ss_pred eEEEEEecCC-------------CccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEeccc
Confidence 4588999999 34789999999999997777776666442 2223233333333348899999999
Q ss_pred ccccCc
Q 005171 225 LDIMDR 230 (710)
Q Consensus 225 ~Dl~~~ 230 (710)
.|+-+.
T Consensus 132 ~d~~~A 137 (186)
T KOG0075|consen 132 IDLPGA 137 (186)
T ss_pred ccCccc
Confidence 999754
No 273
>PRK12740 elongation factor G; Reviewed
Probab=98.12 E-value=1.1e-05 Score=95.79 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=46.0
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..++||||||..+ +...+..++..+|. +++|+++..+..... ..+++.+...+.+.++|+||+|+
T Consensus 60 ~~i~liDtPG~~~-------------~~~~~~~~l~~aD~-vllvvd~~~~~~~~~-~~~~~~~~~~~~p~iiv~NK~D~ 124 (668)
T PRK12740 60 HKINLIDTPGHVD-------------FTGEVERALRVLDG-AVVVVCAVGGVEPQT-ETVWRQAEKYGVPRIIFVNKMDR 124 (668)
T ss_pred EEEEEEECCCcHH-------------HHHHHHHHHHHhCe-EEEEEeCCCCcCHHH-HHHHHHHHHcCCCEEEEEECCCC
Confidence 5799999999642 23445677888885 455555655543332 44555555567899999999999
Q ss_pred cCc
Q 005171 228 MDR 230 (710)
Q Consensus 228 ~~~ 230 (710)
...
T Consensus 125 ~~~ 127 (668)
T PRK12740 125 AGA 127 (668)
T ss_pred CCC
Confidence 754
No 274
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=1.1e-05 Score=79.83 Aligned_cols=119 Identities=15% Similarity=0.220 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
-+..||++|++++|||-||..++--+|-+-+ +..+-+ +|.
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~S-----ksTIGv------------ef~----------------------- 52 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLES-----KSTIGV------------EFA----------------------- 52 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCccc-----ccceeE------------EEE-----------------------
Confidence 3667999999999999999999888773222 111111 110
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCC-ccc-chH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS-DLA-NSD 203 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~-d~~-~~~ 203 (710)
...+.|.+. .....||||.| ++..+.++..|.+.+...+|+-.-.+. .+. -..
T Consensus 53 -----------t~t~~vd~k-~vkaqIWDTAG-------------QERyrAitSaYYrgAvGAllVYDITr~~Tfenv~r 107 (222)
T KOG0087|consen 53 -----------TRTVNVDGK-TVKAQIWDTAG-------------QERYRAITSAYYRGAVGALLVYDITRRQTFENVER 107 (222)
T ss_pred -----------eeceeecCc-EEEEeeecccc-------------hhhhccccchhhcccceeEEEEechhHHHHHHHHH
Confidence 001111111 23689999999 568889999999999876666422121 111 123
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
+++-++........+++|.||+||..
T Consensus 108 WL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 108 WLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred HHHHHHhcCCCCeEEEEeecchhhhh
Confidence 34444555555788999999999975
No 275
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.07 E-value=4e-05 Score=86.63 Aligned_cols=66 Identities=23% Similarity=0.277 Sum_probs=39.9
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccc--hHHHHHHHhhCCCCCcEEEeeccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN--SDALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~--~~~l~la~~~dp~g~rtI~VlTK~ 225 (710)
.++|||+||.. ..+++++ .-+...|. +++|++|+.. ... .+.+.++..+. -.+.|+|+||+
T Consensus 118 ~i~~IDtPGH~------------~fi~~m~-~g~~~~D~-alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKi 181 (460)
T PTZ00327 118 HVSFVDCPGHD------------ILMATML-NGAAVMDA-ALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKI 181 (460)
T ss_pred eEeeeeCCCHH------------HHHHHHH-HHHhhCCE-EEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecc
Confidence 68999999932 3445544 33556774 4556666643 222 23344444332 24689999999
Q ss_pred cccCc
Q 005171 226 DIMDR 230 (710)
Q Consensus 226 Dl~~~ 230 (710)
|+.+.
T Consensus 182 Dlv~~ 186 (460)
T PTZ00327 182 DLVKE 186 (460)
T ss_pred cccCH
Confidence 99863
No 276
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.07 E-value=1.8e-05 Score=81.31 Aligned_cols=38 Identities=34% Similarity=0.378 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC-CCCccCCC--ccccc
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR-DFLPRGND--ICTRR 83 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~-~~lP~~~g--~~Tr~ 83 (710)
..-.|+|+|.+++|||+|||.|+|. +.++++.+ .||+-
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~g 46 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKG 46 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccc
Confidence 3446999999999999999999999 23466655 56653
No 277
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.04 E-value=1.7e-05 Score=84.05 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=36.9
Q ss_pred CcchHHHHHHHHHHHHHhCCC-----CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCC
Q 005171 22 GGSVIPLVNKLQDIFAQLGSQ-----STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (710)
Q Consensus 22 ~~~l~~~~~kl~d~~~~~g~~-----~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~ 77 (710)
+..+-.+++.+.+.+...... ..-...+|+|||.+|+|||||+|+|+|.....++.
T Consensus 88 ~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~ 148 (276)
T TIGR03596 88 GKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN 148 (276)
T ss_pred cccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCC
Confidence 345566666666654321100 01234579999999999999999999987655544
No 278
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.03 E-value=8.6e-06 Score=78.94 Aligned_cols=119 Identities=18% Similarity=0.349 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
.|-.|++.|+.|+|||||+|.++..+|. ..-.....+.|+.
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~-----------------~qykaTIgadFlt---------------------- 48 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFS-----------------QQYKATIGADFLT---------------------- 48 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHH-----------------HHhccccchhhee----------------------
Confidence 4567999999999999999999988761 0000111122211
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEE-ecCCCcccchHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAV-TPANSDLANSDA 204 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V-~~a~~d~~~~~~ 204 (710)
-.+.|. .....|.||||.| ++.++.+-..+.+.+||.+|+. ++....+.+-+.
T Consensus 49 ------------Kev~Vd-~~~vtlQiWDTAG-------------QERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~ 102 (210)
T KOG0394|consen 49 ------------KEVQVD-DRSVTLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVYDVNNPKSFENLEN 102 (210)
T ss_pred ------------eEEEEc-CeEEEEEEEeccc-------------HHHhhhcccceecCCceEEEEeecCChhhhccHHH
Confidence 122232 2235799999999 6788888888999999877763 222222333332
Q ss_pred --HHHHHhhCC---CCCcEEEeeccccccC
Q 005171 205 --LQIAGIADP---DGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 --l~la~~~dp---~g~rtI~VlTK~Dl~~ 229 (710)
-+++...+| ..=|.|++.||+|+-.
T Consensus 103 Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 103 WRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred HHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 235555554 4568999999999965
No 279
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.03 E-value=2.7e-05 Score=83.06 Aligned_cols=56 Identities=18% Similarity=0.383 Sum_probs=36.5
Q ss_pred CcchHHHHHHHHHHHHHhCC---CC--CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCC
Q 005171 22 GGSVIPLVNKLQDIFAQLGS---QS--TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (710)
Q Consensus 22 ~~~l~~~~~kl~d~~~~~g~---~~--~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~ 77 (710)
+..+-.+++.+...+..... .. .-...+|+|||.+|+|||||+|+|+|...+.++.
T Consensus 91 ~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~ 151 (287)
T PRK09563 91 GQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN 151 (287)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCC
Confidence 44455566666555432210 00 1133579999999999999999999987655544
No 280
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.02 E-value=2.8e-05 Score=81.52 Aligned_cols=128 Identities=23% Similarity=0.301 Sum_probs=86.6
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHh
Q 005171 43 STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (710)
Q Consensus 43 ~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (710)
...+.|.|+|||.+||||||||++|++..++|.+.-..|--|+. ...++
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~-------------h~a~L------------------ 222 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTL-------------HSAHL------------------ 222 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchh-------------hhccC------------------
Confidence 35789999999999999999999999999988887654433310 00111
Q ss_pred hhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 005171 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (710)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (710)
|....+.+.||=|+.+. -|..+.+.++.. ...+..++ +||-|.+..+..+..
T Consensus 223 ----------------------psg~~vlltDTvGFisd----LP~~LvaAF~AT-LeeVaead-lllHvvDiShP~ae~ 274 (410)
T KOG0410|consen 223 ----------------------PSGNFVLLTDTVGFISD----LPIQLVAAFQAT-LEEVAEAD-LLLHVVDISHPNAEE 274 (410)
T ss_pred ----------------------CCCcEEEEeechhhhhh----CcHHHHHHHHHH-HHHHhhcc-eEEEEeecCCccHHH
Confidence 12235789999999753 356666666654 45567776 888888777665543
Q ss_pred H---HHHHHHhhCC----CCCcEEEeeccccccC
Q 005171 203 D---ALQIAGIADP----DGYRTIGIITKLDIMD 229 (710)
Q Consensus 203 ~---~l~la~~~dp----~g~rtI~VlTK~Dl~~ 229 (710)
. .+...++++- ...+.|=|=||+|...
T Consensus 275 q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 275 QRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 3 2455566553 2356677778888754
No 281
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.99 E-value=2.3e-05 Score=88.51 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+++|...+|||||+.+|+..
T Consensus 9 nv~i~Ghvd~GKSTL~~~Ll~~ 30 (446)
T PTZ00141 9 NLVVIGHVDSGKSTTTGHLIYK 30 (446)
T ss_pred EEEEEecCCCCHHHHHHHHHHH
Confidence 4899999999999999999853
No 282
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.99 E-value=0.00036 Score=75.64 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
-..|.|.|.+|||||||+++|...
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998754
No 283
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.99 E-value=2.5e-05 Score=88.29 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=40.5
Q ss_pred ccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-cc-----chHHHHHHHhhCCCCC-cEE
Q 005171 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LA-----NSDALQIAGIADPDGY-RTI 219 (710)
Q Consensus 147 ~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~-----~~~~l~la~~~dp~g~-rtI 219 (710)
...++||||||.. .+...+..++..+|+.||+| ++..+ +. .....+.+..+...|. +.|
T Consensus 84 ~~~i~liDtPGh~-------------df~~~~~~g~~~aD~aIlVV-da~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iI 149 (447)
T PLN00043 84 KYYCTVIDAPGHR-------------DFIKNMITGTSQADCAVLII-DSTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149 (447)
T ss_pred CEEEEEEECCCHH-------------HHHHHHHhhhhhccEEEEEE-EcccCceecccCCCchHHHHHHHHHHcCCCcEE
Confidence 3579999999932 33333456678888766655 45443 21 0111223333333455 578
Q ss_pred EeeccccccC
Q 005171 220 GIITKLDIMD 229 (710)
Q Consensus 220 ~VlTK~Dl~~ 229 (710)
+|+||+|+.+
T Consensus 150 V~vNKmD~~~ 159 (447)
T PLN00043 150 CCCNKMDATT 159 (447)
T ss_pred EEEEcccCCc
Confidence 8999999873
No 284
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.94 E-value=4.8e-05 Score=74.56 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=35.4
Q ss_pred CcchHHHHHHHHHHHHHhC----CCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccC
Q 005171 22 GGSVIPLVNKLQDIFAQLG----SQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (710)
Q Consensus 22 ~~~l~~~~~kl~d~~~~~g----~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~ 76 (710)
+..+-.+.+.|...+.... ....-..+.++++|.+|+|||||+|+|++..+..++
T Consensus 86 ~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~ 144 (171)
T cd01856 86 GKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVG 144 (171)
T ss_pred cccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeec
Confidence 4456566666655432100 001123358999999999999999999998764433
No 285
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=6.5e-05 Score=83.59 Aligned_cols=117 Identities=22% Similarity=0.323 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
..|-|.|+|..--||+|||.+|-+..+.....|--|.- -|.
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQh--------------IGA------------------------- 192 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQH--------------IGA------------------------- 192 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccce--------------ece-------------------------
Confidence 35889999999999999999998877643333322210 111
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--H
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--D 203 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~ 203 (710)
..+.-|....+||.||||- ..+..|-.+=..-.| |+++|+.|+...-.+ +
T Consensus 193 --------------F~V~~p~G~~iTFLDTPGH-------------aAF~aMRaRGA~vtD-IvVLVVAadDGVmpQT~E 244 (683)
T KOG1145|consen 193 --------------FTVTLPSGKSITFLDTPGH-------------AAFSAMRARGANVTD-IVVLVVAADDGVMPQTLE 244 (683)
T ss_pred --------------EEEecCCCCEEEEecCCcH-------------HHHHHHHhccCcccc-EEEEEEEccCCccHhHHH
Confidence 1122334457999999993 355555444444444 888888887765444 4
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCccccH
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDRGTDA 234 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~ 234 (710)
+++.|+. .+.++|+.+||+|.- +.+.
T Consensus 245 aIkhAk~---A~VpiVvAinKiDkp--~a~p 270 (683)
T KOG1145|consen 245 AIKHAKS---ANVPIVVAINKIDKP--GANP 270 (683)
T ss_pred HHHHHHh---cCCCEEEEEeccCCC--CCCH
Confidence 4555555 458999999999964 4443
No 286
>PRK12288 GTPase RsgA; Reviewed
Probab=97.93 E-value=2.1e-05 Score=85.86 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~ 75 (710)
.++++|.+|+|||||||+|+|...+.+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t 233 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILV 233 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceee
Confidence 389999999999999999999865443
No 287
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.93 E-value=6.7e-06 Score=79.63 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=22.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~ 75 (710)
..++++|..|+|||||||+|++...+.+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t 63 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKT 63 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhh
Confidence 5799999999999999999999865443
No 288
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.92 E-value=3e-05 Score=80.70 Aligned_cols=28 Identities=25% Similarity=0.172 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~ 75 (710)
..++++|.+|+|||||||+|+|...+.+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t 148 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQV 148 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccc
Confidence 4799999999999999999999865433
No 289
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=4.4e-05 Score=71.63 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=50.9
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc--cchHHHHHHHhhCCCCCcEEEeeccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL--ANSDALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~--~~~~~l~la~~~dp~g~rtI~VlTK~ 225 (710)
..|.+|||.| ++.++..++.|.+.+...+|+..-.+.|. +-..++.-++.+.+...-+|.+-||-
T Consensus 58 vKLQIWDTAG-------------QErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKk 124 (214)
T KOG0086|consen 58 VKLQIWDTAG-------------QERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKK 124 (214)
T ss_pred EEEEEeeccc-------------HHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChh
Confidence 4699999999 67999999999998876666644333332 22345666788877666677778999
Q ss_pred cccC
Q 005171 226 DIMD 229 (710)
Q Consensus 226 Dl~~ 229 (710)
|+-.
T Consensus 125 DL~~ 128 (214)
T KOG0086|consen 125 DLDP 128 (214)
T ss_pred hcCh
Confidence 9864
No 290
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.90 E-value=6.6e-05 Score=71.59 Aligned_cols=111 Identities=19% Similarity=0.241 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
--+|.++|--||||||+++.|.|.+ .+.-.+|..- +
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~---~~~i~pt~gf---~-------------------------------------- 51 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGED---TDTISPTLGF---Q-------------------------------------- 51 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCC---ccccCCccce---e--------------------------------------
Confidence 3469999999999999999999986 2222222111 0
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (710)
.-.+++. ...|+++|.-| +..+++...+|....+++|.+|.. .....-++...
T Consensus 52 ----------Iktl~~~---~~~L~iwDvGG-------------q~~lr~~W~nYfestdglIwvvDs-sD~~r~~e~~~ 104 (185)
T KOG0073|consen 52 ----------IKTLEYK---GYTLNIWDVGG-------------QKTLRSYWKNYFESTDGLIWVVDS-SDRMRMQECKQ 104 (185)
T ss_pred ----------eEEEEec---ceEEEEEEcCC-------------cchhHHHHHHhhhccCeEEEEEEC-chHHHHHHHHH
Confidence 0011111 13699999998 347788899999999977766655 33333333333
Q ss_pred HHHh----hCCCCCcEEEeecccccc
Q 005171 207 IAGI----ADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 207 la~~----~dp~g~rtI~VlTK~Dl~ 228 (710)
.++. -.-.|.+.+++.||.|+.
T Consensus 105 ~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 105 ELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred HHHHHHhhhhhcCCceEEEEecCcCc
Confidence 2222 223378999999999996
No 291
>PRK12289 GTPase RsgA; Reviewed
Probab=97.90 E-value=2.4e-05 Score=85.45 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~ 76 (710)
.++|+|.+|+|||||||+|+|...+.++
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~ 201 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVG 201 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccc
Confidence 4899999999999999999987654444
No 292
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.88 E-value=0.00027 Score=75.84 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-+.|+|+|.+|+|||||++.|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999874
No 293
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.87 E-value=0.0002 Score=79.89 Aligned_cols=79 Identities=25% Similarity=0.172 Sum_probs=47.5
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.++.||||||..... ..+-..+..+. ...+++ .+++|++|... +++...++.+......+-+|+||+|.
T Consensus 183 ~DvViIDTaGr~~~d-----~~lm~El~~i~--~~~~p~-e~lLVlda~~G---q~a~~~a~~F~~~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 183 FDIIIVDTSGRHKQE-----DSLFEEMLQVA--EAIQPD-NIIFVMDGSIG---QAAEAQAKAFKDSVDVGSVIITKLDG 251 (429)
T ss_pred CCEEEEECCCCCcch-----HHHHHHHHHHh--hhcCCc-EEEEEeccccC---hhHHHHHHHHHhccCCcEEEEECccC
Confidence 479999999965431 22222333332 123455 56666776543 34455666665444678899999999
Q ss_pred cCccccHHHH
Q 005171 228 MDRGTDARNL 237 (710)
Q Consensus 228 ~~~~~~~~~~ 237 (710)
...+-.+..+
T Consensus 252 ~argG~aLs~ 261 (429)
T TIGR01425 252 HAKGGGALSA 261 (429)
T ss_pred CCCccHHhhh
Confidence 8766555443
No 294
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=7.1e-05 Score=81.91 Aligned_cols=101 Identities=13% Similarity=0.074 Sum_probs=59.3
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.+++||||||-.... ......+..++.. ..++ -+++|++|+. ...+....++.+... .-.=+|+||+|.
T Consensus 321 ~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~--~~Pd-evlLVLsATt--k~~d~~~i~~~F~~~-~idglI~TKLDE 389 (436)
T PRK11889 321 VDYILIDTAGKNYRA-----SETVEEMIETMGQ--VEPD-YICLTLSASM--KSKDMIEIITNFKDI-HIDGIVFTKFDE 389 (436)
T ss_pred CCEEEEeCccccCcC-----HHHHHHHHHHHhh--cCCC-eEEEEECCcc--ChHHHHHHHHHhcCC-CCCEEEEEcccC
Confidence 379999999975421 1111223333222 2344 3455566543 234556677777653 446678999999
Q ss_pred cCccccHHHHHhCCccccccceEEEEcCChhhhh
Q 005171 228 MDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (710)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~ 261 (710)
...+..+.++... ..+.+.|++.-.+-++|+.
T Consensus 390 T~k~G~iLni~~~--~~lPIsyit~GQ~VPeDI~ 421 (436)
T PRK11889 390 TASSGELLKIPAV--SSAPIVLMTDGQDVKKNIH 421 (436)
T ss_pred CCCccHHHHHHHH--HCcCEEEEeCCCCCCcchh
Confidence 8876666555433 2345677777666667654
No 295
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=9.3e-05 Score=73.66 Aligned_cols=70 Identities=26% Similarity=0.398 Sum_probs=42.9
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc---CCCeEEEEEecCCCcccc-hHHHHHH----Hhh--CCCCCcE
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK---QPSCLILAVTPANSDLAN-SDALQIA----GIA--DPDGYRT 218 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~---~~~~iIL~V~~a~~d~~~-~~~l~la----~~~--dp~g~rt 218 (710)
.++|||+||-. ..+..+.+|+. ..-+|| +|+++.....+ .++-.++ -.. ...+.++
T Consensus 83 ~~~LVD~PGH~-------------rlR~kl~e~~~~~~~akaiV-FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~v 148 (238)
T KOG0090|consen 83 NVTLVDLPGHS-------------RLRRKLLEYLKHNYSAKAIV-FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPV 148 (238)
T ss_pred ceEEEeCCCcH-------------HHHHHHHHHccccccceeEE-EEEeccccchhhHHHHHHHHHHHHhhccccCCCCE
Confidence 47999999943 55666677777 455444 55444433322 2332222 111 3457889
Q ss_pred EEeeccccccCccc
Q 005171 219 IGIITKLDIMDRGT 232 (710)
Q Consensus 219 I~VlTK~Dl~~~~~ 232 (710)
++.+||-|+....+
T Consensus 149 LIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 149 LIACNKQDLFTAKT 162 (238)
T ss_pred EEEecchhhhhcCc
Confidence 99999999986544
No 296
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00014 Score=81.50 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=77.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
..-|-|+|+|..=.||||||-+|=+..+-+...|--|.-. ++.
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhI-------------GA~------------------------ 45 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHI-------------GAY------------------------ 45 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEe-------------eeE------------------------
Confidence 4578999999999999999999988877555554333111 000
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS-- 202 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~-- 202 (710)
.+.+.--..+.|+|+||||- +.+..|-.+=.+-.| |.++|++++..+-.+
T Consensus 46 --------------~v~~~~~~~~~itFiDTPGH-------------eAFt~mRaRGa~vtD-IaILVVa~dDGv~pQTi 97 (509)
T COG0532 46 --------------QVPLDVIKIPGITFIDTPGH-------------EAFTAMRARGASVTD-IAILVVAADDGVMPQTI 97 (509)
T ss_pred --------------EEEeccCCCceEEEEcCCcH-------------HHHHHHHhcCCcccc-EEEEEEEccCCcchhHH
Confidence 01110002367999999993 455565444444455 666667777665444
Q ss_pred HHHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 203 DALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 203 ~~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
+++..++. .+.|+|+.+||+|+.+..
T Consensus 98 EAI~hak~---a~vP~iVAiNKiDk~~~n 123 (509)
T COG0532 98 EAINHAKA---AGVPIVVAINKIDKPEAN 123 (509)
T ss_pred HHHHHHHH---CCCCEEEEEecccCCCCC
Confidence 44555555 468999999999998543
No 297
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.77 E-value=0.00016 Score=68.44 Aligned_cols=116 Identities=14% Similarity=0.161 Sum_probs=70.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc--cchHHHHHHHhhCCCCCcEEEeeccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL--ANSDALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~--~~~~~l~la~~~dp~g~rtI~VlTK~ 225 (710)
.+|.+|||.| ++.+..+---|.+..+..+|+..-.+.|. .-..+..-++..-....-.++|-||+
T Consensus 62 a~L~IWDTAG-------------QErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKi 128 (218)
T KOG0088|consen 62 ADLHIWDTAG-------------QERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKI 128 (218)
T ss_pred eeeeeeeccc-------------hHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcc
Confidence 4799999999 45566666668999997777643222111 01112223344444556788999999
Q ss_pred cccCccccHHHHHhCCccccccceEEEEcCChhhhhhcccHHHHHHHHHHhccCCCccccccccCCchhHHHHHHHHHHH
Q 005171 226 DIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQ 305 (710)
Q Consensus 226 Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~ 305 (710)
|+-.+. ..+..+|...-+.--+.+ .-.++.+..||..|...|.....+
T Consensus 129 DLEeeR-------------------------------~Vt~qeAe~YAesvGA~y-~eTSAk~N~Gi~elFe~Lt~~MiE 176 (218)
T KOG0088|consen 129 DLEEER-------------------------------QVTRQEAEAYAESVGALY-METSAKDNVGISELFESLTAKMIE 176 (218)
T ss_pred cHHHhh-------------------------------hhhHHHHHHHHHhhchhh-eecccccccCHHHHHHHHHHHHHH
Confidence 996431 234555544333322211 114567889999999999888777
Q ss_pred HHH
Q 005171 306 HIK 308 (710)
Q Consensus 306 ~i~ 308 (710)
|..
T Consensus 177 ~~s 179 (218)
T KOG0088|consen 177 HSS 179 (218)
T ss_pred Hhh
Confidence 763
No 298
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.75 E-value=6.7e-05 Score=81.22 Aligned_cols=28 Identities=32% Similarity=0.549 Sum_probs=24.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCcc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPR 75 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~ 75 (710)
-++.|||-+|+|||||||+|+|+....+
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~ 160 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAKT 160 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccceee
Confidence 3599999999999999999999986333
No 299
>PRK13768 GTPase; Provisional
Probab=97.74 E-value=7.2e-05 Score=78.27 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=42.4
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcC-CCeEEEEEecCCCcccchHH-----HHHHHhhCCCCCcEEEee
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQ-PSCLILAVTPANSDLANSDA-----LQIAGIADPDGYRTIGII 222 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~-~~~iIL~V~~a~~d~~~~~~-----l~la~~~dp~g~rtI~Vl 222 (710)
++.+||+||..+... .....+.++ +++.. ...++++|+++.......+. +.+..+. ..+.+.|.|+
T Consensus 98 ~~~~~d~~g~~~~~~------~~~~~~~~~-~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~ 169 (253)
T PRK13768 98 DYVLVDTPGQMELFA------FRESGRKLV-ERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVL 169 (253)
T ss_pred CEEEEeCCcHHHHHh------hhHHHHHHH-HHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEE
Confidence 799999999754311 011222222 33332 13577888887543333221 1111222 3478999999
Q ss_pred ccccccCccc
Q 005171 223 TKLDIMDRGT 232 (710)
Q Consensus 223 TK~Dl~~~~~ 232 (710)
||+|+.+..+
T Consensus 170 nK~D~~~~~~ 179 (253)
T PRK13768 170 NKADLLSEEE 179 (253)
T ss_pred EhHhhcCchh
Confidence 9999987643
No 300
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.74 E-value=7.1e-05 Score=82.32 Aligned_cols=42 Identities=29% Similarity=0.447 Sum_probs=30.8
Q ss_pred CCcchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 21 ~~~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
-+..+-.+++.|.+... | ..++|||.+|+|||||+|+|++..
T Consensus 137 ~g~gv~eL~~~l~~~~~--~-------~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 137 KGNGIDELLDKIKKARN--K-------KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CCCCHHHHHHHHHHHhC--C-------CeEEEECCCCCCHHHHHHHHHhhc
Confidence 45556566666654311 1 479999999999999999999864
No 301
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00018 Score=84.66 Aligned_cols=136 Identities=18% Similarity=0.242 Sum_probs=85.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
.+.-|.|+|..-+|||||.++|+-.. |...+ + ++. ..|..+.|+.+..++
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t------G~i~k-~--------------G~v--~~g~~~~D~~e~Eqe------- 58 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT------GIISK-I--------------GEV--HDGAATMDWMEQEQE------- 58 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc------CCcCC-C--------------ccc--cCCCccCCCcHHHHh-------
Confidence 45669999999999999999998432 11111 0 000 013334555443322
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
.+..+....+.+...+ ...++||||||..+- ..-+.+.++-.|..|+ |++|..+...+. .
T Consensus 59 ---RGITI~saa~s~~~~~--~~~iNlIDTPGHVDF-------------t~EV~rslrvlDgavv-VvdaveGV~~QT-E 118 (697)
T COG0480 59 ---RGITITSAATTLFWKG--DYRINLIDTPGHVDF-------------TIEVERSLRVLDGAVV-VVDAVEGVEPQT-E 118 (697)
T ss_pred ---cCCEEeeeeeEEEEcC--ceEEEEeCCCCcccc-------------HHHHHHHHHhhcceEE-EEECCCCeeecH-H
Confidence 2344555566666655 346999999997643 2234455666665444 455555554443 4
Q ss_pred HHHHhhCCCCCcEEEeeccccccCcc
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
.+.++++..+.|.|+++||+|.+...
T Consensus 119 tv~rqa~~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 119 TVWRQADKYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred HHHHHHhhcCCCeEEEEECccccccC
Confidence 67788888899999999999998543
No 302
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.70 E-value=0.00087 Score=69.13 Aligned_cols=220 Identities=18% Similarity=0.246 Sum_probs=109.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeee-----------------cCCCcc
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFL-----------------HLPGKR 108 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~-----------------~~~g~~ 108 (710)
..+.|+|||=-||||+|++..|.+.-. .... .|.+++|...-....|..-. ...|-.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~-~~~~-----ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI 91 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH-AKKT-----PPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGI 91 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh-hccC-----CCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcch
Confidence 455799999999999999999986521 1111 26666664332211111100 011221
Q ss_pred c-------cChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcC----CCCCCchHHHHHHHHH
Q 005171 109 F-------YDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKV----PVGEQPADIEARIRTM 177 (710)
Q Consensus 109 ~-------~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~----~~~~q~~di~~~i~~l 177 (710)
. +.|+++...|+...+. .+..||||||=+.. +.|. .+.+
T Consensus 92 ~TsLNLF~tk~dqv~~~iek~~~~----------------------~~~~liDTPGQIE~FtWSAsGs-------IIte- 141 (366)
T KOG1532|consen 92 VTSLNLFATKFDQVIELIEKRAEE----------------------FDYVLIDTPGQIEAFTWSASGS-------IITE- 141 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcc----------------------cCEEEEcCCCceEEEEecCCcc-------chHh-
Confidence 1 2344444444433221 36899999996433 2121 1211
Q ss_pred HHHHhcCCCeEEEEEecCCCcccc----hHHHHHHHhhCCCCCcEEEeeccccccCccccHHHHH------hCCcccccc
Q 005171 178 IMSYIKQPSCLILAVTPANSDLAN----SDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLL------LGKVIPLRL 247 (710)
Q Consensus 178 v~~yi~~~~~iIL~V~~a~~d~~~----~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l------~~~~~~l~l 247 (710)
.....-.++|.+|++....... +..+--+.-+-....++|+|+||+|+.+.+- +.+++ +...-....
T Consensus 142 --~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~f-a~eWm~DfE~FqeAl~~~~~ 218 (366)
T KOG1532|consen 142 --TLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSEF-ALEWMTDFEAFQEALNEAES 218 (366)
T ss_pred --hHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccHH-HHHHHHHHHHHHHHHHhhcc
Confidence 2222233577777665432211 2223223334455789999999999987642 11111 111111233
Q ss_pred ceEEEEcCChhhhhhcccHHHHHHHHHHhccCCCc-cccccccCCchhHHHHHHHHHHHHHHhhhhhHHH
Q 005171 248 GYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPV-YNGLADRCGVPQLAKKLNQILVQHIKAILPGLKS 316 (710)
Q Consensus 248 G~~~V~nrs~~di~~~~s~~~a~~~E~~fF~~~~~-~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~ 316 (710)
+|+.-..| |+ ++.. ++|+++-.. -.+...+.|...+...+.+.+.+..+.--|...+
T Consensus 219 ~y~s~l~~---------Sm--SL~l-eeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ykp~~Ek 276 (366)
T KOG1532|consen 219 SYMSNLTR---------SM--SLML-EEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYKPEYEK 276 (366)
T ss_pred chhHHhhh---------hH--HHHH-HHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44421111 11 1111 234443100 0112356788888888888888777777776544
No 303
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.00031 Score=83.14 Aligned_cols=172 Identities=22% Similarity=0.276 Sum_probs=91.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCC--------CccceeeecCCCccccChhHHHHHHH
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT--------DEEYGEFLHLPGKRFYDFSEIRREIQ 120 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~--------~~~~~~~~~~~g~~~~d~~~i~~~i~ 120 (710)
-|++||.+|+||||++..|.+.-..-.+.. .. -+...+. -..|++....+-....+..++.+.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~k----kV---~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~ 259 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGAD----QL---ALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA 259 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCC----eE---EEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH
Confidence 478999999999999999998731111110 01 1111111 01222222222222234455544443
Q ss_pred HhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc
Q 005171 121 AQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA 200 (710)
Q Consensus 121 ~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~ 200 (710)
... ..+++||||||..... ..+.+.+..+.. ...+. -+++|+++...
T Consensus 260 ~~~-----------------------~~D~VLIDTAGRs~~d-----~~l~eel~~l~~--~~~p~-e~~LVLsAt~~-- 306 (767)
T PRK14723 260 ALG-----------------------DKHLVLIDTVGMSQRD-----RNVSEQIAMLCG--VGRPV-RRLLLLNAASH-- 306 (767)
T ss_pred Hhc-----------------------CCCEEEEeCCCCCccC-----HHHHHHHHHHhc--cCCCC-eEEEEECCCCc--
Confidence 211 1369999999976432 222333333221 22343 45666666642
Q ss_pred chHHHHHHHhhCCCC--CcEEEeeccccccCccccHHHHHhCCccccccceEEEEcCChhhhhh
Q 005171 201 NSDALQIAGIADPDG--YRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMF 262 (710)
Q Consensus 201 ~~~~l~la~~~dp~g--~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~~ 262 (710)
..+..++++.+.... ..+=+|+||+|....+-...+++... .+.+.|++.-.+-++|+..
T Consensus 307 ~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~~--~lPI~yit~GQ~VPdDL~~ 368 (767)
T PRK14723 307 GDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIRH--RLPVHYVSTGQKVPEHLEL 368 (767)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHHH--CCCeEEEecCCCChhhccc
Confidence 222233555554321 34567899999988776666655332 3556788777776677653
No 304
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.69 E-value=0.00022 Score=68.50 Aligned_cols=48 Identities=27% Similarity=0.234 Sum_probs=35.0
Q ss_pred CCcchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 005171 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (710)
Q Consensus 21 ~~~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~l 73 (710)
-+..+-.+.+.|.+.+... -...+++++|.+++||||++|+|.+....
T Consensus 80 ~~~gi~~L~~~l~~~~~~~-----~~~~~~~~ig~~~~Gkssl~~~l~~~~~~ 127 (156)
T cd01859 80 ERLGTKILRRTIKELAKID-----GKEGKVGVVGYPNVGKSSIINALKGRHSA 127 (156)
T ss_pred ccccHHHHHHHHHHHHhhc-----CCCcEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 3555666777776655421 13457899999999999999999987543
No 305
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=7e-05 Score=82.17 Aligned_cols=104 Identities=19% Similarity=0.204 Sum_probs=54.4
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch-HHHHHHHhhC--CC---CCcEEEe
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS-DALQIAGIAD--PD---GYRTIGI 221 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~-~~l~la~~~d--p~---g~rtI~V 221 (710)
.+++||||||..... ..+.+++..+ .....+. -.++|++|+.....- +.++-.+... |. ...+=+|
T Consensus 216 ~DlVLIDTaG~~~~d-----~~l~e~La~L--~~~~~~~-~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I 287 (374)
T PRK14722 216 KHMVLIDTIGMSQRD-----RTVSDQIAML--HGADTPV-QRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCI 287 (374)
T ss_pred CCEEEEcCCCCCccc-----HHHHHHHHHH--hccCCCC-eEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEE
Confidence 379999999987431 1222233222 1112232 355666666544332 2222222221 11 1235678
Q ss_pred eccccccCccccHHHHHhCCccccccceEEEEcCChhhhh
Q 005171 222 ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (710)
Q Consensus 222 lTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~ 261 (710)
+||+|.....-...+++.. ..+.+.|++.-.+-++|+.
T Consensus 288 ~TKlDEt~~~G~~l~~~~~--~~lPi~yvt~Gq~VPedl~ 325 (374)
T PRK14722 288 LTKLDEASNLGGVLDTVIR--YKLPVHYVSTGQKVPENLY 325 (374)
T ss_pred EeccccCCCccHHHHHHHH--HCcCeEEEecCCCCCcccc
Confidence 8999998766655555433 2455667776666666654
No 306
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.68 E-value=8.1e-05 Score=78.55 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
-..|++|.+|+|||||||+|.+..
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchh
Confidence 358999999999999999999853
No 307
>PRK13796 GTPase YqeH; Provisional
Probab=97.66 E-value=6.6e-05 Score=82.71 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++|||.+|+|||||||+|++..
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhc
Confidence 69999999999999999999753
No 308
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00036 Score=75.99 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=51.9
Q ss_pred CcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-------ccc--
Q 005171 131 KGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-------LAN-- 201 (710)
Q Consensus 131 ~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-------~~~-- 201 (710)
.|++-+.-...+..+. ..++|+|+||.. ..+.+|+.. ...+|+.||+|. |+.+ ...
T Consensus 69 rGvTi~~~~~~fet~k-~~~tIiDaPGHr------------dFvknmItG-asqAD~aVLVV~-a~~~efE~g~~~~gQt 133 (428)
T COG5256 69 RGVTIDVAHSKFETDK-YNFTIIDAPGHR------------DFVKNMITG-ASQADVAVLVVD-ARDGEFEAGFGVGGQT 133 (428)
T ss_pred cceEEEEEEEEeecCC-ceEEEeeCCchH------------HHHHHhhcc-hhhccEEEEEEE-CCCCccccccccCCch
Confidence 3444444445555444 579999999932 356666644 345776666654 4433 222
Q ss_pred hHHHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 202 SDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 202 ~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
.+-..|++.+. -...|+++||+|.++-.
T Consensus 134 rEH~~La~tlG--i~~lIVavNKMD~v~wd 161 (428)
T COG5256 134 REHAFLARTLG--IKQLIVAVNKMDLVSWD 161 (428)
T ss_pred hHHHHHHHhcC--CceEEEEEEcccccccC
Confidence 23355666654 47889999999999733
No 309
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.63 E-value=0.0002 Score=80.51 Aligned_cols=118 Identities=21% Similarity=0.289 Sum_probs=71.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
=+||+||+.|+||||||-+|+..+|-|.-. -|.|-+. .|
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~VP---~rl~~i~----------------IP---------------------- 48 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAVP---RRLPRIL----------------IP---------------------- 48 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhcccccc---ccCCccc----------------cC----------------------
Confidence 379999999999999999999998732211 1111000 00
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecC----CCcccchH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPA----NSDLANSD 203 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a----~~d~~~~~ 203 (710)
..+ .|.....++|||+--. +.+..+.+-++.++. |..|-+. ..|--..-
T Consensus 49 ---adv----------tPe~vpt~ivD~ss~~-------------~~~~~l~~EirkA~v-i~lvyavd~~~T~D~ist~ 101 (625)
T KOG1707|consen 49 ---ADV----------TPENVPTSIVDTSSDS-------------DDRLCLRKEIRKADV-ICLVYAVDDESTVDRISTK 101 (625)
T ss_pred ---Ccc----------CcCcCceEEEeccccc-------------chhHHHHHHHhhcCE-EEEEEecCChHHhhhhhhh
Confidence 000 1223358999998311 223344456777873 3333222 23444455
Q ss_pred HHHHHHhhCCC--CCcEEEeeccccccCcccc
Q 005171 204 ALQIAGIADPD--GYRTIGIITKLDIMDRGTD 233 (710)
Q Consensus 204 ~l~la~~~dp~--g~rtI~VlTK~Dl~~~~~~ 233 (710)
++-++++.-.. ..|+|+|-||+|..+....
T Consensus 102 WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 102 WLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred hhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 66677776532 5899999999999876543
No 310
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00064 Score=77.23 Aligned_cols=100 Identities=21% Similarity=0.233 Sum_probs=53.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.+++||||||..... ....+++..+ ... ... -.++|++++.. ..+...+++.+... ...-+|+||+|.
T Consensus 429 ~DLVLIDTaG~s~~D-----~~l~eeL~~L-~aa-~~~--a~lLVLpAtss--~~Dl~eii~~f~~~-~~~gvILTKlDE 496 (559)
T PRK12727 429 YKLVLIDTAGMGQRD-----RALAAQLNWL-RAA-RQV--TSLLVLPANAH--FSDLDEVVRRFAHA-KPQGVVLTKLDE 496 (559)
T ss_pred CCEEEecCCCcchhh-----HHHHHHHHHH-HHh-hcC--CcEEEEECCCC--hhHHHHHHHHHHhh-CCeEEEEecCcC
Confidence 479999999986431 1111222222 222 222 24455555543 23333445554432 456799999999
Q ss_pred cCccccHHHHHhCCccccccceEEEEcCChhhhh
Q 005171 228 MDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (710)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~ 261 (710)
........+++.. ..+.+-|++.-.+-++|+.
T Consensus 497 t~~lG~aLsv~~~--~~LPI~yvt~GQ~VPeDL~ 528 (559)
T PRK12727 497 TGRFGSALSVVVD--HQMPITWVTDGQRVPDDLH 528 (559)
T ss_pred ccchhHHHHHHHH--hCCCEEEEeCCCCchhhhh
Confidence 7665555555432 2355667766555555543
No 311
>PRK00098 GTPase RsgA; Reviewed
Probab=97.61 E-value=0.00018 Score=77.11 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
-.++++|.+|+|||||||+|+|...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 3699999999999999999999753
No 312
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=97.60 E-value=0.00018 Score=72.31 Aligned_cols=117 Identities=19% Similarity=0.247 Sum_probs=70.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..|+|||+|.-.+++..|...-. .+. .+.|..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~-------------pti-ed~y~k-------------------------- 42 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYD-------------PTI-EDSYRK-------------------------- 42 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccC-------------CCc-cccceE--------------------------
Confidence 3579999999999999999999887743211 000 011111
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH--
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (710)
.+.+. .....|.|+||+|- +....|-..|+...++.+|+..-.+ ..+=.++
T Consensus 43 ------------~~~v~-~~~~~l~ilDt~g~-------------~~~~~~~~~~~~~~~gF~lVysitd-~~SF~~~~~ 95 (196)
T KOG0395|consen 43 ------------ELTVD-GEVCMLEILDTAGQ-------------EEFSAMRDLYIRNGDGFLLVYSITD-RSSFEEAKQ 95 (196)
T ss_pred ------------EEEEC-CEEEEEEEEcCCCc-------------ccChHHHHHhhccCcEEEEEEECCC-HHHHHHHHH
Confidence 11122 12346889999992 2344566679999987766654322 2111222
Q ss_pred -HHHH-HhhCCCCCcEEEeeccccccCc
Q 005171 205 -LQIA-GIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 -l~la-~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+..+ +..+....|+++|.||+|+...
T Consensus 96 l~~~I~r~~~~~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 96 LREQILRVKGRDDVPIILVGNKCDLERE 123 (196)
T ss_pred HHHHHHHhhCcCCCCEEEEEEcccchhc
Confidence 2222 2223344699999999999763
No 313
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00054 Score=76.39 Aligned_cols=101 Identities=19% Similarity=0.128 Sum_probs=55.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.++.||||+|..... ....+++..+. . ...+. -+++|++|+... .+..+.++.+... .-.=+|+||+|.
T Consensus 270 ~d~VLIDTaGrsqrd-----~~~~~~l~~l~-~-~~~~~-~~~LVl~at~~~--~~~~~~~~~f~~~-~~~~~I~TKlDE 338 (420)
T PRK14721 270 KHMVLIDTVGMSQRD-----QMLAEQIAMLS-Q-CGTQV-KHLLLLNATSSG--DTLDEVISAYQGH-GIHGCIITKVDE 338 (420)
T ss_pred CCEEEecCCCCCcch-----HHHHHHHHHHh-c-cCCCc-eEEEEEcCCCCH--HHHHHHHHHhcCC-CCCEEEEEeeeC
Confidence 368999999987531 12222333321 1 11232 455566666433 2334455555543 345678999999
Q ss_pred cCccccHHHHHhCCccccccceEEEEcCChhhhh
Q 005171 228 MDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (710)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~ 261 (710)
........+++... .+.+.|++.-.+-+.|+.
T Consensus 339 t~~~G~~l~~~~~~--~lPi~yvt~Gq~VP~Dl~ 370 (420)
T PRK14721 339 AASLGIALDAVIRR--KLVLHYVTNGQKVPEDLH 370 (420)
T ss_pred CCCccHHHHHHHHh--CCCEEEEECCCCchhhhh
Confidence 87766665554332 345567766555555654
No 314
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.58 E-value=0.0013 Score=69.41 Aligned_cols=101 Identities=14% Similarity=0.089 Sum_probs=57.7
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.++.||||||-.... ...++ .+.++.. ..+++ .+++|++|+.. ..++...++.+... ...=+|+||.|.
T Consensus 155 ~D~ViIDt~Gr~~~~----~~~l~-el~~~~~--~~~~~-~~~LVl~a~~~--~~d~~~~~~~f~~~-~~~~~I~TKlDe 223 (270)
T PRK06731 155 VDYILIDTAGKNYRA----SETVE-EMIETMG--QVEPD-YICLTLSASMK--SKDMIEIITNFKDI-HIDGIVFTKFDE 223 (270)
T ss_pred CCEEEEECCCCCcCC----HHHHH-HHHHHHh--hhCCC-eEEEEEcCccC--HHHHHHHHHHhCCC-CCCEEEEEeecC
Confidence 479999999975321 11122 2222221 12444 45666666533 23556677777653 445678999999
Q ss_pred cCccccHHHHHhCCccccccceEEEEcCChhhhh
Q 005171 228 MDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (710)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~ 261 (710)
....-.+.++... ..+.+-|++.-.+-++|+.
T Consensus 224 t~~~G~~l~~~~~--~~~Pi~~it~Gq~vp~di~ 255 (270)
T PRK06731 224 TASSGELLKIPAV--SSAPIVLMTDGQDVKKNIH 255 (270)
T ss_pred CCCccHHHHHHHH--HCcCEEEEeCCCCCCcchh
Confidence 8876665554432 2344567766555555543
No 315
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.58 E-value=0.00081 Score=72.67 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=52.9
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHH---HHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMI---MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv---~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK 224 (710)
.+++||||||..... ....+.++.+. ...+.....-+++|++|+.. ++++.-++.....-...-+|+||
T Consensus 197 ~D~ViIDTaGr~~~~-----~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g---~~~~~~a~~f~~~~~~~giIlTK 268 (318)
T PRK10416 197 IDVLIIDTAGRLHNK-----TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG---QNALSQAKAFHEAVGLTGIILTK 268 (318)
T ss_pred CCEEEEeCCCCCcCC-----HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC---hHHHHHHHHHHhhCCCCEEEEEC
Confidence 479999999976432 22222333332 22223333356677777642 33344445443333556789999
Q ss_pred ccccCccccHHHHHhCCccccccceEEEE
Q 005171 225 LDIMDRGTDARNLLLGKVIPLRLGYVGVV 253 (710)
Q Consensus 225 ~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~ 253 (710)
+|....+..+.+++.. ..+..-|+++-
T Consensus 269 lD~t~~~G~~l~~~~~--~~~Pi~~v~~G 295 (318)
T PRK10416 269 LDGTAKGGVVFAIADE--LGIPIKFIGVG 295 (318)
T ss_pred CCCCCCccHHHHHHHH--HCCCEEEEeCC
Confidence 9987766655555422 24455666643
No 316
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.53 E-value=0.0011 Score=74.52 Aligned_cols=102 Identities=22% Similarity=0.211 Sum_probs=56.2
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.++.||||||..... ......+..++.. ...+. -+++|++++... .+..++++.+...+. .-+|+||+|.
T Consensus 300 ~DlVlIDt~G~~~~d-----~~~~~~L~~ll~~-~~~~~-~~~LVl~a~~~~--~~l~~~~~~f~~~~~-~~vI~TKlDe 369 (424)
T PRK05703 300 CDVILIDTAGRSQRD-----KRLIEELKALIEF-SGEPI-DVYLVLSATTKY--EDLKDIYKHFSRLPL-DGLIFTKLDE 369 (424)
T ss_pred CCEEEEeCCCCCCCC-----HHHHHHHHHHHhc-cCCCC-eEEEEEECCCCH--HHHHHHHHHhCCCCC-CEEEEecccc
Confidence 479999999985431 1112234444431 11333 445556665432 333455566654432 4588999999
Q ss_pred cCccccHHHHHhCCccccccceEEEEcCChhhhh
Q 005171 228 MDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (710)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~ 261 (710)
........+++... .+.+.|++.-.+-+.|+.
T Consensus 370 t~~~G~i~~~~~~~--~lPv~yit~Gq~VpdDl~ 401 (424)
T PRK05703 370 TSSLGSILSLLIES--GLPISYLTNGQRVPDDIK 401 (424)
T ss_pred cccccHHHHHHHHH--CCCEEEEeCCCCChhhhh
Confidence 77655555554332 344566666555455543
No 317
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.53 E-value=0.00024 Score=75.78 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP 74 (710)
..++++|.+|+|||||||+|+|.....
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~ 188 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLA 188 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcc
Confidence 469999999999999999999986543
No 318
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.00034 Score=64.75 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=73.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
..-+++|+.++|||-||..++...|+ ..||-.+- .+| |
T Consensus 12 fkyiiigdmgvgkscllhqftekkfm-------adcphtig----------vef----g--------------------- 49 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFM-------ADCPHTIG----------VEF----G--------------------- 49 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHh-------hcCCcccc----------eec----c---------------------
Confidence 45789999999999999999998874 22442111 111 0
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc---cchHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---ANSDA 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---~~~~~ 204 (710)
..-+++.+.. ..|.+|||.| ++.++..+++|.+.+... |+|-+-.... .-+.+
T Consensus 50 ---------triievsgqk-iklqiwdtag-------------qerfravtrsyyrgaaga-lmvyditrrstynhlssw 105 (215)
T KOG0097|consen 50 ---------TRIIEVSGQK-IKLQIWDTAG-------------QERFRAVTRSYYRGAAGA-LMVYDITRRSTYNHLSSW 105 (215)
T ss_pred ---------eeEEEecCcE-EEEEEeeccc-------------HHHHHHHHHHHhccccce-eEEEEehhhhhhhhHHHH
Confidence 1123333332 4699999999 678999999999987643 3433322211 11334
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+.-++.+..-..-++.+-||.|+-+.
T Consensus 106 l~dar~ltnpnt~i~lignkadle~q 131 (215)
T KOG0097|consen 106 LTDARNLTNPNTVIFLIGNKADLESQ 131 (215)
T ss_pred HhhhhccCCCceEEEEecchhhhhhc
Confidence 55556665444556677899999654
No 319
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.53 E-value=0.00028 Score=72.68 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=64.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC--ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g--~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
+|+++|..+|||||..+.+.+. ..|..+. ..|-.+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~-~~p~dT~~L~~T~~ve----------------------------------------- 38 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHK-YSPRDTLRLEPTIDVE----------------------------------------- 38 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEE-----------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcC-CCchhccccCCcCCce-----------------------------------------
Confidence 5899999999999999999987 3355442 0111110
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (710)
.-.+.......+.|||.||-...-.. .....-....++.. .+++|.++..+--..+
T Consensus 39 ------------~~~v~~~~~~~l~iwD~pGq~~~~~~--------~~~~~~~~if~~v~-~LIyV~D~qs~~~~~~l~~ 97 (232)
T PF04670_consen 39 ------------KSHVRFLSFLPLNIWDCPGQDDFMEN--------YFNSQREEIFSNVG-VLIYVFDAQSDDYDEDLAY 97 (232)
T ss_dssp ------------EEEEECTTSCEEEEEEE-SSCSTTHT--------THTCCHHHHHCTES-EEEEEEETT-STCHHHHHH
T ss_pred ------------EEEEecCCCcEEEEEEcCCccccccc--------cccccHHHHHhccC-EEEEEEEcccccHHHHHHH
Confidence 11111122347999999996533111 00011122345665 5666777773322222
Q ss_pred ---HHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 204 ---ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 204 ---~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
.++.+.+..| +..+.+.+.|+|++.++
T Consensus 98 ~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 98 LSDCIEALRQYSP-NIKVFVFIHKMDLLSED 127 (232)
T ss_dssp HHHHHHHHHHHST-T-EEEEEEE-CCCS-HH
T ss_pred HHHHHHHHHHhCC-CCeEEEEEeecccCCHH
Confidence 2455667777 47788899999998654
No 320
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.51 E-value=0.00084 Score=64.41 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005171 50 VAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~ 70 (710)
|.++|..++||||++..|...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999765
No 321
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.48 E-value=0.00072 Score=65.55 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
|.++++|..+||||||++.+++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 67899999999999999999876
No 322
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.0012 Score=72.15 Aligned_cols=172 Identities=19% Similarity=0.181 Sum_probs=85.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCC--Cccc---eeeecCCCccccChhHHHHHHHHh
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT--DEEY---GEFLHLPGKRFYDFSEIRREIQAQ 122 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~--~~~~---~~~~~~~g~~~~d~~~i~~~i~~~ 122 (710)
.-|+++|.+|+||||++..|... +...+. ....+....-.. ...| +.....|-....+..++.+.+...
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~-l~~~g~-----~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l 280 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQ-LLKQNR-----TVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYM 280 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHcCC-----eEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHH
Confidence 35789999999999999999854 222221 111121110000 0111 111111111123445554444322
Q ss_pred hhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCCeEEEEEecCCCccc
Q 005171 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLA 200 (710)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~ 200 (710)
... ...+++||||||..... ...+.++ ..+.. .++ .+++|.+++. .
T Consensus 281 ~~~--------------------~~~D~VLIDTAGr~~~d--------~~~l~EL-~~l~~~~~p~-~~~LVLsag~--~ 328 (407)
T PRK12726 281 TYV--------------------NCVDHILIDTVGRNYLA--------EESVSEI-SAYTDVVHPD-LTCFTFSSGM--K 328 (407)
T ss_pred Hhc--------------------CCCCEEEEECCCCCccC--------HHHHHHH-HHHhhccCCc-eEEEECCCcc--c
Confidence 100 01379999999976421 1233332 22232 344 4455666543 3
Q ss_pred chHHHHHHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceEEEEcCChhhh
Q 005171 201 NSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 260 (710)
Q Consensus 201 ~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di 260 (710)
..+....++.+... ...-+|+||+|....+-.+.++... ..+.+-|++.-.+-+.|+
T Consensus 329 ~~d~~~i~~~f~~l-~i~glI~TKLDET~~~G~~Lsv~~~--tglPIsylt~GQ~VpdDi 385 (407)
T PRK12726 329 SADVMTILPKLAEI-PIDGFIITKMDETTRIGDLYTVMQE--TNLPVLYMTDGQNITENI 385 (407)
T ss_pred HHHHHHHHHhcCcC-CCCEEEEEcccCCCCccHHHHHHHH--HCCCEEEEecCCCCCccc
Confidence 33445566655543 3456789999998766655554422 234455666554444443
No 323
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.45 E-value=0.00027 Score=77.23 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcc-CCCccccce
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPR-GNDICTRRP 84 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~-~~g~~Tr~p 84 (710)
.+.+||-+|+|||||+|+|++...-+. ....||-.|
T Consensus 4 k~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p 40 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEP 40 (368)
T ss_pred eEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCC
Confidence 588999999999999999999874133 334566666
No 324
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.00074 Score=74.72 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=58.0
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.+++||||||.... + ...+. .+..++.. +. ++.-+++|++|+.. ..+..+.+..+.+. ..+=+|+||.|.
T Consensus 255 ~DlVLIDTaGr~~~---~-~~~l~-el~~~l~~-~~-~~~e~~LVlsat~~--~~~~~~~~~~~~~~-~~~~~I~TKlDe 324 (388)
T PRK12723 255 FDLVLVDTIGKSPK---D-FMKLA-EMKELLNA-CG-RDAEFHLAVSSTTK--TSDVKEIFHQFSPF-SYKTVIFTKLDE 324 (388)
T ss_pred CCEEEEcCCCCCcc---C-HHHHH-HHHHHHHh-cC-CCCeEEEEEcCCCC--HHHHHHHHHHhcCC-CCCEEEEEeccC
Confidence 47999999997642 1 11111 22222222 22 23346667777655 23334555665433 345678999999
Q ss_pred cCccccHHHHHhCCccccccceEEEEcCChhhhh
Q 005171 228 MDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (710)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~ 261 (710)
...+..+.+++... .+.+.|++.-.+-+.|+.
T Consensus 325 t~~~G~~l~~~~~~--~~Pi~yit~Gq~vPeDl~ 356 (388)
T PRK12723 325 TTCVGNLISLIYEM--RKEVSYVTDGQIVPHNIS 356 (388)
T ss_pred CCcchHHHHHHHHH--CCCEEEEeCCCCChhhhh
Confidence 88776666655332 344567777666666654
No 325
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.00084 Score=74.46 Aligned_cols=103 Identities=19% Similarity=0.163 Sum_probs=56.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc-CCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK-QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~-~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~D 226 (710)
.++.||||||..... .+.-+.+..+. ..+. ....-+++|++|+... .+....++.+... ...=+|+||+|
T Consensus 300 ~D~VLIDTaGr~~rd-----~~~l~eL~~~~-~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~-~~~glIlTKLD 370 (432)
T PRK12724 300 SELILIDTAGYSHRN-----LEQLERMQSFY-SCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL-NYRRILLTKLD 370 (432)
T ss_pred CCEEEEeCCCCCccC-----HHHHHHHHHHH-HhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC-CCCEEEEEccc
Confidence 479999999986432 11112223322 2221 1122455666666543 2334455555433 34667899999
Q ss_pred ccCccccHHHHHhCCccccccceEEEEcCChhhhh
Q 005171 227 IMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (710)
Q Consensus 227 l~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~ 261 (710)
....+-.+.++... ..+.+-|++.-.+-+.|+.
T Consensus 371 Et~~~G~il~i~~~--~~lPI~ylt~GQ~VPeDi~ 403 (432)
T PRK12724 371 EADFLGSFLELADT--YSKSFTYLSVGQEVPFDIL 403 (432)
T ss_pred CCCCccHHHHHHHH--HCCCEEEEecCCCCCCCHH
Confidence 98776666555432 2455667777666666654
No 326
>PRK14974 cell division protein FtsY; Provisional
Probab=97.39 E-value=0.00054 Score=74.44 Aligned_cols=92 Identities=23% Similarity=0.326 Sum_probs=54.2
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.+++||||||..... .++-..++.+.. ..+++ .+++|+++.. .+++...++.+...-.-.-+|+||+|.
T Consensus 223 ~DvVLIDTaGr~~~~-----~~lm~eL~~i~~--~~~pd-~~iLVl~a~~---g~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTD-----ANLMDELKKIVR--VTKPD-LVIFVGDALA---GNDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCc-----HHHHHHHHHHHH--hhCCc-eEEEeecccc---chhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 469999999986532 233334444431 23566 4556666653 345566666655433457789999999
Q ss_pred cCccccHHHHHhCCccccccceEEE
Q 005171 228 MDRGTDARNLLLGKVIPLRLGYVGV 252 (710)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V 252 (710)
...+..+.++... ..+.+-|+++
T Consensus 292 ~~~~G~~ls~~~~--~~~Pi~~i~~ 314 (336)
T PRK14974 292 DAKGGAALSIAYV--IGKPILFLGV 314 (336)
T ss_pred CCCccHHHHHHHH--HCcCEEEEeC
Confidence 8776655544432 2344556653
No 327
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.37 E-value=0.0011 Score=66.70 Aligned_cols=95 Identities=20% Similarity=0.222 Sum_probs=48.7
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH-HHHHHHhhCCCCCcEEEeecccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD-ALQIAGIADPDGYRTIGIITKLD 226 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~-~l~la~~~dp~g~rtI~VlTK~D 226 (710)
.+++||||||..... .+..+.++++. +.+ .++ -+++|++++......+ +..+.+.+ ...=+|+||+|
T Consensus 84 ~D~vlIDT~Gr~~~d-----~~~~~el~~~~-~~~-~~~-~~~LVlsa~~~~~~~~~~~~~~~~~----~~~~lIlTKlD 151 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRD-----EELLEELKKLL-EAL-NPD-EVHLVLSATMGQEDLEQALAFYEAF----GIDGLILTKLD 151 (196)
T ss_dssp SSEEEEEE-SSSSTH-----HHHHHHHHHHH-HHH-SSS-EEEEEEEGGGGGHHHHHHHHHHHHS----STCEEEEESTT
T ss_pred CCEEEEecCCcchhh-----HHHHHHHHHHh-hhc-CCc-cceEEEecccChHHHHHHHHHhhcc----cCceEEEEeec
Confidence 379999999976431 22223444433 222 343 5666666665432222 22222222 23456799999
Q ss_pred ccCccccHHHHHhCCccccccceEEEEcCC
Q 005171 227 IMDRGTDARNLLLGKVIPLRLGYVGVVNRS 256 (710)
Q Consensus 227 l~~~~~~~~~~l~~~~~~l~lG~~~V~nrs 256 (710)
.........+++.. ..+.+.|++.-.+-
T Consensus 152 et~~~G~~l~~~~~--~~~Pi~~it~Gq~V 179 (196)
T PF00448_consen 152 ETARLGALLSLAYE--SGLPISYITTGQRV 179 (196)
T ss_dssp SSSTTHHHHHHHHH--HTSEEEEEESSSST
T ss_pred CCCCcccceeHHHH--hCCCeEEEECCCCh
Confidence 98776655554433 23344555544333
No 328
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.36 E-value=0.003 Score=66.44 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-+.|-|-|.+|+|||||+++|.-.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHH
Confidence 4567999999999999999999643
No 329
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.00041 Score=74.98 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=28.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccce
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p 84 (710)
.++.+||-+|+|||||+|||+....-+-..-.||=-|
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIeP 39 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEP 39 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccC
Confidence 4689999999999999999998874334444566554
No 330
>PTZ00099 rab6; Provisional
Probab=97.33 E-value=0.0011 Score=65.35 Aligned_cols=68 Identities=22% Similarity=0.248 Sum_probs=43.2
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc--ccch-HHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD--LANS-DALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d--~~~~-~~l~la~~~dp~g~rtI~VlTK 224 (710)
..+.||||||. +..+.+...|++.++++||++ +.+.. +... .++..+........++|+|.||
T Consensus 29 v~l~iwDt~G~-------------e~~~~~~~~~~~~ad~~ilv~-D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 29 VRLQLWDTAGQ-------------ERFRSLIPSYIRDSAAAIVVY-DITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEECCCh-------------HHhhhccHHHhCCCcEEEEEE-ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 57999999994 355667778999998655554 44432 2221 2222232333335678999999
Q ss_pred ccccC
Q 005171 225 LDIMD 229 (710)
Q Consensus 225 ~Dl~~ 229 (710)
+|+.+
T Consensus 95 ~DL~~ 99 (176)
T PTZ00099 95 TDLGD 99 (176)
T ss_pred ccccc
Confidence 99964
No 331
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.33 E-value=0.00018 Score=73.14 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
-+|++||-+|+||||||..|++..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~ 86 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH 86 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch
Confidence 579999999999999999998753
No 332
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.31 E-value=0.0021 Score=67.94 Aligned_cols=94 Identities=23% Similarity=0.309 Sum_probs=49.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHH---HHHhc-CCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMI---MSYIK-QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv---~~yi~-~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlT 223 (710)
.++.||||||..... ......++.+. ...+. .++ -+++|+++.. ..+++..+..+...-...-+|+|
T Consensus 155 ~D~ViIDT~G~~~~d-----~~~~~el~~~~~~~~~~~~~~~~-~~~LVl~a~~---~~~~~~~~~~f~~~~~~~g~IlT 225 (272)
T TIGR00064 155 IDVVLIDTAGRLQNK-----VNLMDELKKIKRVIKKVDKDAPD-EVLLVLDATT---GQNALEQAKVFNEAVGLTGIILT 225 (272)
T ss_pred CCEEEEeCCCCCcch-----HHHHHHHHHHHHHHhcccCCCCc-eEEEEEECCC---CHHHHHHHHHHHhhCCCCEEEEE
Confidence 479999999976431 12222333332 22222 244 4556666653 23334444443322245678999
Q ss_pred cccccCccccHHHHHhCCccccccceEEE
Q 005171 224 KLDIMDRGTDARNLLLGKVIPLRLGYVGV 252 (710)
Q Consensus 224 K~Dl~~~~~~~~~~l~~~~~~l~lG~~~V 252 (710)
|+|....+..+.++... ..+.+-|++.
T Consensus 226 KlDe~~~~G~~l~~~~~--~~~Pi~~~~~ 252 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYE--LKLPIKFIGV 252 (272)
T ss_pred ccCCCCCccHHHHHHHH--HCcCEEEEeC
Confidence 99998776655544332 1244555553
No 333
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.0013 Score=75.65 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=85.3
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHh
Q 005171 43 STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (710)
Q Consensus 43 ~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (710)
..+.-|-++|+|..-+||+-||..|-|..+---..|.-|. .-|-+++..+.|++.....
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitq---------------------qIgAt~fp~~ni~e~tk~~ 529 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQ---------------------QIGATYFPAENIREKTKEL 529 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccccccccceee---------------------eccccccchHHHHHHHHHH
Confidence 4678899999999999999999999887653222222221 1144455555555443322
Q ss_pred hhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 005171 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (710)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (710)
.... +. + -.+|.+.+|||||. +.+.++-.+.-..+| +.++|++--+.+..+
T Consensus 530 ~~~~----K~------~-----~kvPg~lvIdtpgh-------------EsFtnlRsrgsslC~-~aIlvvdImhGlepq 580 (1064)
T KOG1144|consen 530 KKDA----KK------R-----LKVPGLLVIDTPGH-------------ESFTNLRSRGSSLCD-LAILVVDIMHGLEPQ 580 (1064)
T ss_pred Hhhh----hh------h-----cCCCeeEEecCCCc-------------hhhhhhhhccccccc-eEEEEeehhccCCcc
Confidence 2111 00 1 12467999999993 355666666667777 555666666776665
Q ss_pred HHHHHHHhhCCCCCcEEEeecccccc
Q 005171 203 DALQIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 203 ~~l~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
. +.-+..+.....++|+.+||+|.+
T Consensus 581 t-iESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 581 T-IESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred h-hHHHHHHHhcCCCeEEeehhhhhh
Confidence 4 233333444568999999999987
No 334
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.28 E-value=0.001 Score=74.70 Aligned_cols=92 Identities=22% Similarity=0.205 Sum_probs=53.1
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
+++||||||..... .+.-+.++.+. .+..++ .+++|+++... +++...++.+...-..+-+|+||+|.-
T Consensus 177 DvVIIDTAGr~~~d-----~~lm~El~~l~--~~~~pd-evlLVvda~~g---q~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHALE-----EDLIEEMKEIK--EAVKPD-EVLLVIDATIG---QQAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccch-----HHHHHHHHHHH--HHhccc-ceeEEEecccc---HHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 79999999976431 22222333331 123455 45556666553 566777777665444566789999987
Q ss_pred CccccHHHHHhCCccccccceEEEE
Q 005171 229 DRGTDARNLLLGKVIPLRLGYVGVV 253 (710)
Q Consensus 229 ~~~~~~~~~l~~~~~~l~lG~~~V~ 253 (710)
..+-.+..+..-. .+.+-|+++-
T Consensus 246 a~~G~~ls~~~~~--~~Pi~fig~G 268 (437)
T PRK00771 246 AKGGGALSAVAET--GAPIKFIGTG 268 (437)
T ss_pred CcccHHHHHHHHH--CcCEEEEecC
Confidence 7666554443221 2334566553
No 335
>PRK10867 signal recognition particle protein; Provisional
Probab=97.28 E-value=0.0017 Score=72.91 Aligned_cols=93 Identities=23% Similarity=0.266 Sum_probs=52.4
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.+++||||||..... ...-..+..+ ...+ .++.+ ++|+++. ..+++...++.+...-..+-+|+||+|.
T Consensus 184 ~DvVIIDTaGrl~~d-----~~lm~eL~~i-~~~v-~p~ev-llVlda~---~gq~av~~a~~F~~~~~i~giIlTKlD~ 252 (433)
T PRK10867 184 YDVVIVDTAGRLHID-----EELMDELKAI-KAAV-NPDEI-LLVVDAM---TGQDAVNTAKAFNEALGLTGVILTKLDG 252 (433)
T ss_pred CCEEEEeCCCCcccC-----HHHHHHHHHH-HHhh-CCCeE-EEEEecc---cHHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 479999999975431 2222233232 2233 45544 6666664 3466777777776544456788999997
Q ss_pred cCccccHHHHHhCCccccccceEEEE
Q 005171 228 MDRGTDARNLLLGKVIPLRLGYVGVV 253 (710)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~ 253 (710)
...+..+..+..-. .+..-|+++-
T Consensus 253 ~~rgG~alsi~~~~--~~PI~fig~G 276 (433)
T PRK10867 253 DARGGAALSIRAVT--GKPIKFIGTG 276 (433)
T ss_pred cccccHHHHHHHHH--CcCEEEEeCC
Confidence 66555454433221 2334455553
No 336
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.27 E-value=0.004 Score=60.94 Aligned_cols=78 Identities=26% Similarity=0.283 Sum_probs=42.0
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.++.|+||||..... .+.-..+..+. .. ..++ .+++|+++... .++.+.+..+.....-.-+|+||+|.
T Consensus 83 ~d~viiDt~g~~~~~-----~~~l~~l~~l~-~~-~~~~-~~~lVv~~~~~---~~~~~~~~~~~~~~~~~~viltk~D~ 151 (173)
T cd03115 83 FDVVIVDTAGRLQID-----ENLMEELKKIK-RV-VKPD-EVLLVVDAMTG---QDAVNQAKAFNEALGITGVILTKLDG 151 (173)
T ss_pred CCEEEEECcccchhh-----HHHHHHHHHHH-hh-cCCC-eEEEEEECCCC---hHHHHHHHHHHhhCCCCEEEEECCcC
Confidence 468999999975321 12222333322 12 2355 45555555432 33344555443222257788899999
Q ss_pred cCccccHHH
Q 005171 228 MDRGTDARN 236 (710)
Q Consensus 228 ~~~~~~~~~ 236 (710)
........+
T Consensus 152 ~~~~g~~~~ 160 (173)
T cd03115 152 DARGGAALS 160 (173)
T ss_pred CCCcchhhh
Confidence 876655443
No 337
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.00032 Score=66.42 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=44.4
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCC--CcccchHHHHHHHhhC-CCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN--SDLANSDALQIAGIAD-PDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~--~d~~~~~~l~la~~~d-p~g~rtI~VlTK 224 (710)
..|.||||.| ++.++.++..|.+.+-..+|...-.+ ..+...+++.-++... -...-+++.-||
T Consensus 67 ihLQlWDTAG-------------QERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK 133 (219)
T KOG0081|consen 67 IHLQLWDTAG-------------QERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNK 133 (219)
T ss_pred EEEeeecccc-------------HHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCc
Confidence 3699999999 67999999999998876666643222 1222222222111111 123557888899
Q ss_pred ccccCc
Q 005171 225 LDIMDR 230 (710)
Q Consensus 225 ~Dl~~~ 230 (710)
+|+.+.
T Consensus 134 ~DL~~~ 139 (219)
T KOG0081|consen 134 ADLEDQ 139 (219)
T ss_pred cchhhh
Confidence 999764
No 338
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.00027 Score=68.92 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=46.4
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH----HHHHHhhCCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA----LQIAGIADPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~----l~la~~~dp~g~rtI~VlT 223 (710)
..+++||.-|- ..+|.+...|..+.+.+|++| |++....-.++ .++...-+..+.++++..|
T Consensus 61 ~~f~vWDvGGq-------------~k~R~lW~~Y~~~t~~lIfVv-DS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aN 126 (181)
T KOG0070|consen 61 ISFTVWDVGGQ-------------EKLRPLWKHYFQNTQGLIFVV-DSSDRERIEEAKEELHRMLAEPELRNAPLLVFAN 126 (181)
T ss_pred eEEEEEecCCC-------------cccccchhhhccCCcEEEEEE-eCCcHHHHHHHHHHHHHHHcCcccCCceEEEEec
Confidence 46899999883 356778889999998655555 44433333333 2333444445788999999
Q ss_pred cccccCc
Q 005171 224 KLDIMDR 230 (710)
Q Consensus 224 K~Dl~~~ 230 (710)
|-|+-..
T Consensus 127 KqD~~~a 133 (181)
T KOG0070|consen 127 KQDLPGA 133 (181)
T ss_pred hhhcccc
Confidence 9998654
No 339
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.24 E-value=0.00056 Score=70.91 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=23.4
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCC
Q 005171 52 VVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT 94 (710)
Q Consensus 52 VVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~ 94 (710)
|+|..||||||+..++... ++.. -|.+..++|.....
T Consensus 1 ViGpaGSGKTT~~~~~~~~--~~~~----~~~~~~vNLDPa~~ 37 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW--LESN----GRDVYIVNLDPAVE 37 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH--HTTT-----S-EEEEE--TT-S
T ss_pred CCCCCCCCHHHHHHHHHHH--HHhc----cCCceEEEcchHhc
Confidence 7999999999999999764 2221 25677787765543
No 340
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.24 E-value=0.0028 Score=59.97 Aligned_cols=70 Identities=13% Similarity=0.248 Sum_probs=46.6
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH-HHHhhCCC----CCcEEEeec
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ-IAGIADPD----GYRTIGIIT 223 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~-la~~~dp~----g~rtI~VlT 223 (710)
.|.|.||.|+...+ .++-+.|++-+|+.+|+-++++.. .-+.+. +-+++|.. ..++++..|
T Consensus 61 ~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~d~e--Sf~rv~llKk~Idk~KdKKEvpiVVLaN 126 (198)
T KOG3883|consen 61 QLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPMDPE--SFQRVELLKKEIDKHKDKKEVPIVVLAN 126 (198)
T ss_pred eEEEeecccccCch------------hhhhHhHhccCceEEEEecCCCHH--HHHHHHHHHHHHhhccccccccEEEEec
Confidence 68999999987431 246678999999888887765532 112222 23455542 456777789
Q ss_pred cccccCccc
Q 005171 224 KLDIMDRGT 232 (710)
Q Consensus 224 K~Dl~~~~~ 232 (710)
|+|+.++.+
T Consensus 127 ~rdr~~p~~ 135 (198)
T KOG3883|consen 127 KRDRAEPRE 135 (198)
T ss_pred hhhcccchh
Confidence 999976644
No 341
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0015 Score=73.18 Aligned_cols=133 Identities=14% Similarity=0.190 Sum_probs=74.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
+.-+.||...--|||||...|+...- |.-+ . .+.+.+-|--++.++
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg--------~i~~-----------~-------~~q~q~LDkl~vERE-------- 105 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTG--------TIDN-----------N-------IGQEQVLDKLQVERE-------- 105 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhC--------CCCC-----------C-------Cchhhhhhhhhhhhh--------
Confidence 44589999999999999999986521 0000 0 001111111122111
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (710)
.+..+......+........-|.||||||-.+-. .-+.+-+.-++.+||+ ++|+.....+....
T Consensus 106 --RGITIkaQtasify~~~~~ylLNLIDTPGHvDFs-------------~EVsRslaac~G~lLv-VDA~qGvqAQT~an 169 (650)
T KOG0462|consen 106 --RGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS-------------GEVSRSLAACDGALLV-VDASQGVQAQTVAN 169 (650)
T ss_pred --cCcEEEeeeeEEEEEcCCceEEEeecCCCccccc-------------ceehehhhhcCceEEE-EEcCcCchHHHHHH
Confidence 1223333333444333233468999999975432 2233455667755555 56676665555444
Q ss_pred HHHhhCCCCCcEEEeeccccccCc
Q 005171 207 IAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 207 la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+...+ ..+-.+|.|+||+|+-..
T Consensus 170 f~lAf-e~~L~iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 170 FYLAF-EAGLAIIPVLNKIDLPSA 192 (650)
T ss_pred HHHHH-HcCCeEEEeeeccCCCCC
Confidence 43333 246899999999999643
No 342
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0027 Score=72.21 Aligned_cols=133 Identities=20% Similarity=0.285 Sum_probs=77.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
...|+++|.-.+|||+|+..|++... |... .+.+..++.++. . +.|.
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~-----~~~e~~lrytD~--l--------------~~E~----------- 174 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTH-PDFS-----KNTEADLRYTDT--L--------------FYEQ----------- 174 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceecc-cccc-----cccccccccccc--c--------------hhhH-----------
Confidence 44589999999999999999999865 4433 222222222211 0 0000
Q ss_pred cCCCCcccccceEEEEecCCc--cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHV--LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~--~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
..+-++-..+..|-+..-.. .-++++||||-.+- ..++ ...++-+|.++|+|..+..-.-+.+
T Consensus 175 -eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF------------~DE~-ta~l~~sDgvVlvvDv~EGVmlntE- 239 (971)
T KOG0468|consen 175 -ERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNF------------SDET-TASLRLSDGVVLVVDVAEGVMLNTE- 239 (971)
T ss_pred -hcCceEeecceEEEEecCcCceeeeeeecCCCcccc------------hHHH-HHHhhhcceEEEEEEcccCceeeHH-
Confidence 01223334444554444333 35899999996532 1122 2345667766666655443333333
Q ss_pred HHHHHhhCCCCCcEEEeecccccc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
++++..-....++.+|+||+|++
T Consensus 240 -r~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 240 -RIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred -HHHHHHHhccCcEEEEEehhHHH
Confidence 55666666678999999999985
No 343
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0021 Score=70.65 Aligned_cols=68 Identities=24% Similarity=0.269 Sum_probs=42.7
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCC-CcEEEeeccccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDG-YRTIGIITKLDI 227 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g-~rtI~VlTK~Dl 227 (710)
.++|||.||.- +.+.+|+.. +...+ ..++|++++..+..+. .+.+.-+|-.| ++.|+|+||+|+
T Consensus 51 ~~~fIDvpgh~------------~~i~~miag-~~~~d-~alLvV~~deGl~~qt-gEhL~iLdllgi~~giivltk~D~ 115 (447)
T COG3276 51 VMGFIDVPGHP------------DFISNLLAG-LGGID-YALLVVAADEGLMAQT-GEHLLILDLLGIKNGIIVLTKADR 115 (447)
T ss_pred ceEEeeCCCcH------------HHHHHHHhh-hcCCc-eEEEEEeCccCcchhh-HHHHHHHHhcCCCceEEEEecccc
Confidence 58999999964 356666533 23344 4455567765555544 23333444444 556999999999
Q ss_pred cCcc
Q 005171 228 MDRG 231 (710)
Q Consensus 228 ~~~~ 231 (710)
.++.
T Consensus 116 ~d~~ 119 (447)
T COG3276 116 VDEA 119 (447)
T ss_pred ccHH
Confidence 9764
No 344
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.10 E-value=0.0033 Score=71.26 Aligned_cols=100 Identities=23% Similarity=0.190 Sum_probs=56.0
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
+..+|||+|..... ..+.+... ++.... .+. -.++|+++.... .+..+.++.+... ..+-+|+||+|..
T Consensus 336 d~VLIDTaGr~~~d-----~~~~e~~~-~l~~~~-~p~-e~~LVLdAt~~~--~~l~~i~~~f~~~-~~~g~IlTKlDet 404 (484)
T PRK06995 336 HIVLIDTIGMSQRD-----RMVSEQIA-MLHGAG-APV-KRLLLLNATSHG--DTLNEVVQAYRGP-GLAGCILTKLDEA 404 (484)
T ss_pred CeEEeCCCCcChhh-----HHHHHHHH-HHhccC-CCC-eeEEEEeCCCcH--HHHHHHHHHhccC-CCCEEEEeCCCCc
Confidence 68999999976431 11111111 111111 122 245566665443 2334556666554 3566789999988
Q ss_pred CccccHHHHHhCCccccccceEEEEcCChhhhh
Q 005171 229 DRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (710)
Q Consensus 229 ~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~ 261 (710)
.....+.+++... .+.+-|++.-.+-+.|+.
T Consensus 405 ~~~G~~l~i~~~~--~lPI~yvt~GQ~VPeDL~ 435 (484)
T PRK06995 405 ASLGGALDVVIRY--KLPLHYVSNGQRVPEDLH 435 (484)
T ss_pred ccchHHHHHHHHH--CCCeEEEecCCCChhhhc
Confidence 7766665554332 445578877766666654
No 345
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.10 E-value=0.00099 Score=68.68 Aligned_cols=135 Identities=22% Similarity=0.363 Sum_probs=77.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
..|.-||.+|-|||||++.|.+..| ++.+|+..---+.|...+ +++.+
T Consensus 43 FNilCvGETg~GKsTLmdtLFNt~f---~~~p~~H~~~~V~L~~~T----------------yelqE------------- 90 (406)
T KOG3859|consen 43 FNILCVGETGLGKSTLMDTLFNTKF---ESEPSTHTLPNVKLQANT----------------YELQE------------- 90 (406)
T ss_pred EEEEEeccCCccHHHHHHHHhcccc---CCCCCccCCCCceeecch----------------hhhhh-------------
Confidence 3489999999999999999999876 233333221111111100 00000
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCC---c--hHHHHHHHHHHHH----------Hhc-CCCeEEEE
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQ---P--ADIEARIRTMIMS----------YIK-QPSCLILA 191 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q---~--~di~~~i~~lv~~----------yi~-~~~~iIL~ 191 (710)
.-+ ...|++|||-|+.+--..+. | +.|+.++..-..+ |-. +-+..+++
T Consensus 91 --------snv--------rlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYF 154 (406)
T KOG3859|consen 91 --------SNV--------RLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYF 154 (406)
T ss_pred --------cCe--------eEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEE
Confidence 011 13599999999975432221 2 2333443332221 111 23445667
Q ss_pred EecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCccc
Q 005171 192 VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGT 232 (710)
Q Consensus 192 V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~ 232 (710)
++|..+.+-.-| +-..+.+|. ...+|-|+-|.|.+...+
T Consensus 155 I~PTGH~LKslD-Lvtmk~Lds-kVNIIPvIAKaDtisK~e 193 (406)
T KOG3859|consen 155 ISPTGHSLKSLD-LVTMKKLDS-KVNIIPVIAKADTISKEE 193 (406)
T ss_pred ecCCCcchhHHH-HHHHHHHhh-hhhhHHHHHHhhhhhHHH
Confidence 788888776666 334566664 477899999999986543
No 346
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.07 E-value=0.0011 Score=72.84 Aligned_cols=134 Identities=18% Similarity=0.287 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
++.-|+||...--||+||+.+|+...---+..+-+ .++..|.+++.++
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v-------------------------~ERvMDSnDlEkE------- 51 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEV-------------------------AERVMDSNDLEKE------- 51 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccch-------------------------hhhhcCccchhhh-------
Confidence 56779999999999999999999764100000000 0111122222211
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
.+..+-.+-..+...+ ..+.+|||||-.+-. + + +.+-++--|+++|+|....-.+.. . .
T Consensus 52 ---RGITILaKnTav~~~~---~~INIvDTPGHADFG--G---E--------VERvl~MVDgvlLlVDA~EGpMPQ-T-r 110 (603)
T COG1217 52 ---RGITILAKNTAVNYNG---TRINIVDTPGHADFG--G---E--------VERVLSMVDGVLLLVDASEGPMPQ-T-R 110 (603)
T ss_pred ---cCcEEEeccceeecCC---eEEEEecCCCcCCcc--c---h--------hhhhhhhcceEEEEEEcccCCCCc-h-h
Confidence 1111111212222222 468999999975432 1 1 222344456666666544444433 3 2
Q ss_pred HHHHhhCCCCCcEEEeeccccccCccc
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMDRGT 232 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~~~~ 232 (710)
...+..-..|-+-|+|+||+|.-+..-
T Consensus 111 FVlkKAl~~gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 111 FVLKKALALGLKPIVVINKIDRPDARP 137 (603)
T ss_pred hhHHHHHHcCCCcEEEEeCCCCCCCCH
Confidence 334444456788999999999976543
No 347
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.03 E-value=0.00068 Score=71.94 Aligned_cols=104 Identities=23% Similarity=0.337 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
.-+.|.+||-+|+||||++|+|+....-|-.--.||=-|-+.+.. ++..+| +-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~-------------v~d~Rf---d~----------- 71 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVE-------------VPDSRF---DL----------- 71 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceee-------------cCchHH---HH-----------
Confidence 456799999999999999999998875444444566555332211 111111 00
Q ss_pred hcCCCCcccccceEEEEecCCc---cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCC
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHV---LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN 196 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~---~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~ 196 (710)
..++|+|.. ..|+++|..|+++.+..++ -+-+--.+.|++.|+ |+-|+.+-
T Consensus 72 -------------l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~------GLGN~FLs~iR~vDa-ifhVVr~f 125 (391)
T KOG1491|consen 72 -------------LCPIYGPKSKVPAFLTVYDIAGLVKGASAGE------GLGNKFLSHIRHVDA-IFHVVRAF 125 (391)
T ss_pred -------------HHHhcCCcceeeeeEEEEeecccccCcccCc------CchHHHHHhhhhccc-eeEEEEec
Confidence 111222221 2699999999998865542 334555677888885 55555443
No 348
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.03 E-value=0.0027 Score=65.82 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-+.|.|-|.+++|||||+++|.-.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHH
Confidence 3568999999999999999999754
No 349
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.01 E-value=0.0025 Score=78.17 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=44.6
Q ss_pred ccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccc
Q 005171 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (710)
Q Consensus 147 ~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~D 226 (710)
.|.++||||||.. .+..+...+...++ ++++|++++..+..+. ...+..+...+.++|+|+||+|
T Consensus 525 ~p~i~fiDTPGhe-------------~F~~lr~~g~~~aD-ivlLVVDa~~Gi~~qT-~e~I~~lk~~~iPiIVViNKiD 589 (1049)
T PRK14845 525 IPGLLFIDTPGHE-------------AFTSLRKRGGSLAD-LAVLVVDINEGFKPQT-IEAINILRQYKTPFVVAANKID 589 (1049)
T ss_pred cCcEEEEECCCcH-------------HHHHHHHhhcccCC-EEEEEEECcccCCHhH-HHHHHHHHHcCCCEEEEEECCC
Confidence 3579999999932 34455555667777 5555566765544433 3333344445689999999999
Q ss_pred ccC
Q 005171 227 IMD 229 (710)
Q Consensus 227 l~~ 229 (710)
+..
T Consensus 590 L~~ 592 (1049)
T PRK14845 590 LIP 592 (1049)
T ss_pred Ccc
Confidence 974
No 350
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.99 E-value=0.0058 Score=61.81 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
..|.|+++|..|||||||++.++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999865
No 351
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.97 E-value=0.0059 Score=77.08 Aligned_cols=53 Identities=26% Similarity=0.471 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHHHHHhC------CCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCC
Q 005171 23 GSVIPLVNKLQDIFAQLG------SQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (710)
Q Consensus 23 ~~l~~~~~kl~d~~~~~g------~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~ 77 (710)
+++-.+-.++.+.+..+- ...-.+||=.+|||.++|||||+|+.- |.+| |-..
T Consensus 81 ~~~~~l~~~~~~a~~~Lk~~~~~~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~~ 139 (1169)
T TIGR03348 81 AEIRELRARFNEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLAE 139 (1169)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCchhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCch
Confidence 334444555555444442 112358999999999999999999997 8775 5543
No 352
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=96.92 E-value=0.0028 Score=59.21 Aligned_cols=114 Identities=16% Similarity=0.261 Sum_probs=70.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
-+|..+|--||||+|+|..|.+.+ |+.-.++-.
T Consensus 18 irilllGldnAGKTT~LKqL~sED--~~hltpT~G--------------------------------------------- 50 (185)
T KOG0074|consen 18 IRILLLGLDNAGKTTFLKQLKSED--PRHLTPTNG--------------------------------------------- 50 (185)
T ss_pred EEEEEEecCCCcchhHHHHHccCC--hhhccccCC---------------------------------------------
Confidence 469999999999999999999987 333221111
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DA 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~ 204 (710)
|+ ...+.+.....|+++|.-| +..++-...+|..+.+.+|+++.+++...... +.
T Consensus 51 -----Fn----~k~v~~~g~f~LnvwDiGG-------------qr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el 108 (185)
T KOG0074|consen 51 -----FN----TKKVEYDGTFHLNVWDIGG-------------QRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEEL 108 (185)
T ss_pred -----cc----eEEEeecCcEEEEEEecCC-------------ccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHH
Confidence 11 1111222224699999988 34577788899999996665554333222111 11
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
..+..+..-...++.+..||-|++..
T Consensus 109 ~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 109 VELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred HHHhhhhhhhccceeehhhhhHHHhh
Confidence 23334433345677788899998754
No 353
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.92 E-value=0.0086 Score=65.80 Aligned_cols=171 Identities=25% Similarity=0.311 Sum_probs=97.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCC--------CccceeeecCCCccccChhHHHHHH
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKT--------DEEYGEFLHLPGKRFYDFSEIRREI 119 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~--------~~~~~~~~~~~g~~~~d~~~i~~~i 119 (710)
--|++||++|+||||.|=.|..+-++--+.- +.. .+ .++. -..|+..+..|=+..++..++..++
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~---kVa-iI---TtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai 276 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKK---KVA-II---TTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAI 276 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCc---ceE-EE---EeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHH
Confidence 4589999999999999999887643111110 011 11 1111 1235555555555566777777776
Q ss_pred HHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCC-CeEEEEEecCCCc
Q 005171 120 QAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQP-SCLILAVTPANSD 198 (710)
Q Consensus 120 ~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~-~~iIL~V~~a~~d 198 (710)
....+ .+++||||-|-.... ...+.+ ...|+... +..+++|++|+.-
T Consensus 277 ~~l~~-----------------------~d~ILVDTaGrs~~D--------~~~i~e-l~~~~~~~~~i~~~Lvlsat~K 324 (407)
T COG1419 277 EALRD-----------------------CDVILVDTAGRSQYD--------KEKIEE-LKELIDVSHSIEVYLVLSATTK 324 (407)
T ss_pred HHhhc-----------------------CCEEEEeCCCCCccC--------HHHHHH-HHHHHhccccceEEEEEecCcc
Confidence 65443 279999999976442 122323 34555544 3345667776643
Q ss_pred ccchHHHHHHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceEEEEcCChhhhhh
Q 005171 199 LANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMF 262 (710)
Q Consensus 199 ~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~~ 262 (710)
. .|.......+..-+.. =+++||+|....-.+..+++... .+...|+..-.+-+.||..
T Consensus 325 ~--~dlkei~~~f~~~~i~-~~I~TKlDET~s~G~~~s~~~e~--~~PV~YvT~GQ~VPeDI~v 383 (407)
T COG1419 325 Y--EDLKEIIKQFSLFPID-GLIFTKLDETTSLGNLFSLMYET--RLPVSYVTNGQRVPEDIVV 383 (407)
T ss_pred h--HHHHHHHHHhccCCcc-eeEEEcccccCchhHHHHHHHHh--CCCeEEEeCCCCCCchhhh
Confidence 3 3334455666554333 35789999876544444444322 3445677666666677643
No 354
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.86 E-value=0.0014 Score=72.97 Aligned_cols=26 Identities=46% Similarity=0.616 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
.-.|.+||-+|+||||+||+|+|...
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk 339 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK 339 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce
Confidence 45689999999999999999999975
No 355
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.02 Score=53.57 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=45.9
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH-HHHHHhhCCC---CCcEEEeecc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-LQIAGIADPD---GYRTIGIITK 224 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-l~la~~~dp~---g~rtI~VlTK 224 (710)
.+.++|.-| +..+|.+.++|......+|+++.+|..+-- .+| .++-+.+... ....++..||
T Consensus 62 kfNvwdvGG-------------qd~iRplWrhYy~gtqglIFV~Dsa~~dr~-eeAr~ELh~ii~~~em~~~~~LvlANk 127 (180)
T KOG0071|consen 62 KFNVWDVGG-------------QDKIRPLWRHYYTGTQGLIFVVDSADRDRI-EEARNELHRIINDREMRDAIILILANK 127 (180)
T ss_pred EEeeeeccC-------------chhhhHHHHhhccCCceEEEEEeccchhhH-HHHHHHHHHHhCCHhhhcceEEEEecC
Confidence 478899998 347889999999999988888877765322 222 2333333322 3456667799
Q ss_pred ccccCc
Q 005171 225 LDIMDR 230 (710)
Q Consensus 225 ~Dl~~~ 230 (710)
-|+-+.
T Consensus 128 QDlp~A 133 (180)
T KOG0071|consen 128 QDLPDA 133 (180)
T ss_pred cccccc
Confidence 999764
No 356
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.77 E-value=0.0042 Score=69.66 Aligned_cols=93 Identities=24% Similarity=0.267 Sum_probs=52.9
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.++.||||||..... ...-..+..+. . .-.++.+ ++|+++. ..+++...++.+...-.-+=+|+||+|.
T Consensus 183 ~DvVIIDTaGr~~~d-----~~l~~eL~~i~-~-~~~p~e~-lLVvda~---tgq~~~~~a~~f~~~v~i~giIlTKlD~ 251 (428)
T TIGR00959 183 FDVVIVDTAGRLQID-----EELMEELAAIK-E-ILNPDEI-LLVVDAM---TGQDAVNTAKTFNERLGLTGVVLTKLDG 251 (428)
T ss_pred CCEEEEeCCCccccC-----HHHHHHHHHHH-H-hhCCceE-EEEEecc---chHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 479999999975431 22223333332 2 3345544 5555665 3467777777776443456778999997
Q ss_pred cCccccHHHHHhCCccccccceEEEE
Q 005171 228 MDRGTDARNLLLGKVIPLRLGYVGVV 253 (710)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~ 253 (710)
...+..+..+.... .+..-|+++-
T Consensus 252 ~~~~G~~lsi~~~~--~~PI~fi~~G 275 (428)
T TIGR00959 252 DARGGAALSVRSVT--GKPIKFIGVG 275 (428)
T ss_pred cccccHHHHHHHHH--CcCEEEEeCC
Confidence 65555454443222 2334566553
No 357
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0076 Score=67.41 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=31.9
Q ss_pred eEEEEEecCCCcccchHHHHHHHhhCCCC-CcEEEeeccccccCccc
Q 005171 187 CLILAVTPANSDLANSDALQIAGIADPDG-YRTIGIITKLDIMDRGT 232 (710)
Q Consensus 187 ~iIL~V~~a~~d~~~~~~l~la~~~dp~g-~rtI~VlTK~Dl~~~~~ 232 (710)
+++|+.+++|-.+.-.. ..++.-+.+.| .|++||+|.+|+.....
T Consensus 135 DLVlLlIdgnfGfEMET-mEFLnil~~HGmPrvlgV~ThlDlfk~~s 180 (1077)
T COG5192 135 DLVLLLIDGNFGFEMET-MEFLNILISHGMPRVLGVVTHLDLFKNPS 180 (1077)
T ss_pred heeEEEeccccCceehH-HHHHHHHhhcCCCceEEEEeecccccChH
Confidence 37888888887765543 44555555554 68999999999986543
No 358
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=96.68 E-value=0.0014 Score=65.47 Aligned_cols=115 Identities=22% Similarity=0.331 Sum_probs=66.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
.+||||+-.+||++||-..+-..| |... .|+++. .|..
T Consensus 6 K~VvVGDga~GKT~ll~~~t~~~f-p~~y-----vPTVFd--------nys~---------------------------- 43 (198)
T KOG0393|consen 6 KCVVVGDGAVGKTCLLISYTTNAF-PEEY-----VPTVFD--------NYSA---------------------------- 43 (198)
T ss_pred EEEEECCCCcCceEEEEEeccCcC-cccc-----cCeEEc--------cceE----------------------------
Confidence 589999999999999988876644 4443 455441 1211
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCC-ccc--chHHH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS-DLA--NSDAL 205 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~-d~~--~~~~l 205 (710)
.+.+.......|.||||.|=.+- ..+|-+ .....|.++++..-.+. .+. ...++
T Consensus 44 ----------~v~V~dg~~v~L~LwDTAGqedY----------DrlRpl---sY~~tdvfl~cfsv~~p~S~~nv~~kW~ 100 (198)
T KOG0393|consen 44 ----------NVTVDDGKPVELGLWDTAGQEDY----------DRLRPL---SYPQTDVFLLCFSVVSPESFENVKSKWI 100 (198)
T ss_pred ----------EEEecCCCEEEEeeeecCCCccc----------cccccc---CCCCCCEEEEEEEcCChhhHHHHHhhhh
Confidence 12221111246999999994322 134433 33456655554432221 111 12223
Q ss_pred HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
--.+...| +.|+|+|.||.|+.+
T Consensus 101 pEi~~~cp-~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 101 PEIKHHCP-NVPIILVGTKADLRD 123 (198)
T ss_pred HHHHhhCC-CCCEEEEeehHHhhh
Confidence 33344444 589999999999984
No 359
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.0024 Score=68.28 Aligned_cols=69 Identities=25% Similarity=0.414 Sum_probs=42.9
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc--ccchHHHHHHHhhCCCCCcEEEeecccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD--LANSDALQIAGIADPDGYRTIGIITKLD 226 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d--~~~~~~l~la~~~dp~g~rtI~VlTK~D 226 (710)
-+||+|+.|-.+.- .. .+.. ...| .+++..|+| +|+.. +++.+-+-++..++ .|.++++||+|
T Consensus 250 lvTfiDLAGh~kY~----~T----Ti~g-LtgY--~Ph~A~LvV-sA~~Gi~~tTrEHLgl~~AL~---iPfFvlvtK~D 314 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQ----KT----TIHG-LTGY--TPHFACLVV-SADRGITWTTREHLGLIAALN---IPFFVLVTKMD 314 (591)
T ss_pred eEEEeecccchhhh----ee----eeee-cccC--CCceEEEEE-EcCCCCccccHHHHHHHHHhC---CCeEEEEEeec
Confidence 48999999954320 00 0111 1123 355555555 45543 55666677777775 79999999999
Q ss_pred ccCccc
Q 005171 227 IMDRGT 232 (710)
Q Consensus 227 l~~~~~ 232 (710)
+.++..
T Consensus 315 l~~~~~ 320 (591)
T KOG1143|consen 315 LVDRQG 320 (591)
T ss_pred cccchh
Confidence 998743
No 360
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.007 Score=66.35 Aligned_cols=132 Identities=18% Similarity=0.285 Sum_probs=76.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHh--CCCCCccCCCccccceEEEEecccCCCccceeeecCCCc-cccChhHHHHHHHHhhh
Q 005171 48 PQVAVVGSQSSGKSSVLEALV--GRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGK-RFYDFSEIRREIQAQTD 124 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~--G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~-~~~d~~~i~~~i~~~t~ 124 (710)
.+.+||-.+-||||||-|.|+ |..+ +..|.+..+ . .++ ...||=++.++
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaI--q~AG~Vk~r-------------k-------~~~~a~SDWM~iEkq------ 64 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAI--QEAGTVKGR-------------K-------SGKHAKSDWMEIEKQ------ 64 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchh--hhcceeeec-------------c-------CCcccccHHHHHHHh------
Confidence 358999999999999999997 3222 111111110 0 011 11233333221
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
.+.+++..++.-+ +.+ .-+.|+||||--+- .+-+.+-+...|+ .++|++|...+..+.
T Consensus 65 ----RGISVtsSVMqF~--Y~~-~~iNLLDTPGHeDF-------------SEDTYRtLtAvDs-AvMVIDaAKGiE~qT- 122 (528)
T COG4108 65 ----RGISVTSSVMQFD--YAD-CLVNLLDTPGHEDF-------------SEDTYRTLTAVDS-AVMVIDAAKGIEPQT- 122 (528)
T ss_pred ----cCceEEeeEEEec--cCC-eEEeccCCCCcccc-------------chhHHHHHHhhhe-eeEEEecccCccHHH-
Confidence 2233333333333 322 35899999996432 2233444556664 445566666776655
Q ss_pred HHHHHhhCCCCCcEEEeeccccccC
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
++|.+-+.-.+.|++-.+||+|.-.
T Consensus 123 ~KLfeVcrlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 123 LKLFEVCRLRDIPIFTFINKLDREG 147 (528)
T ss_pred HHHHHHHhhcCCceEEEeecccccc
Confidence 7787777778899999999999864
No 361
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.50 E-value=0.0025 Score=69.04 Aligned_cols=30 Identities=37% Similarity=0.509 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
++.|||-+|+|||||||+|..+...++|..
T Consensus 254 rvGViG~PNVGKSSvINsL~~~k~C~vg~~ 283 (435)
T KOG2484|consen 254 RVGIIGYPNVGKSSVINSLKRRKACNVGNV 283 (435)
T ss_pred EeeeecCCCCChhHHHHHHHHhccccCCCC
Confidence 689999999999999999999988777764
No 362
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.015 Score=60.86 Aligned_cols=129 Identities=17% Similarity=0.299 Sum_probs=80.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
.|..||...-||+||--||++.= .-.+ +-.+.+++++...-++
T Consensus 14 NigtiGHvdHGKTTLtaAit~~l-a~~~-----------------------------~~~~~~y~~id~aPeE------- 56 (394)
T COG0050 14 NVGTIGHVDHGKTTLTAAITTVL-AKKG-----------------------------GAEAKAYDQIDNAPEE------- 56 (394)
T ss_pred EEEEeccccCchhhHHHHHHHHH-Hhhc-----------------------------cccccchhhhccCchH-------
Confidence 48999999999999999998751 1010 1112233333211111
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc-hHHHHH
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN-SDALQI 207 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~-~~~l~l 207 (710)
...+++-+..+++....+ .....||-||-. ..+++|+....+ .|..||+|..++..... .+-+-+
T Consensus 57 k~rGITIntahveyet~~-rhyahVDcPGHa------------DYvKNMItgAaq-mDgAILVVsA~dGpmPqTrEHiLl 122 (394)
T COG0050 57 KARGITINTAHVEYETAN-RHYAHVDCPGHA------------DYVKNMITGAAQ-MDGAILVVAATDGPMPQTREHILL 122 (394)
T ss_pred hhcCceeccceeEEecCC-ceEEeccCCChH------------HHHHHHhhhHHh-cCccEEEEEcCCCCCCcchhhhhh
Confidence 123444445555555443 468999999953 367777766554 45678888776655433 344557
Q ss_pred HHhhCCCCCcEEEeeccccccCc
Q 005171 208 AGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 208 a~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++++.- .++++++||+|+++.
T Consensus 123 arqvGv--p~ivvflnK~Dmvdd 143 (394)
T COG0050 123 ARQVGV--PYIVVFLNKVDMVDD 143 (394)
T ss_pred hhhcCC--cEEEEEEecccccCc
Confidence 777642 478888999999984
No 363
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.42 E-value=0.0072 Score=63.79 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-+++.|||-+|+|||||||++-..
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~ 166 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNV 166 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHH
Confidence 5678999999999999999998654
No 364
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=96.32 E-value=0.0054 Score=69.35 Aligned_cols=89 Identities=21% Similarity=0.200 Sum_probs=50.4
Q ss_pred CcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---------c
Q 005171 131 KGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA---------N 201 (710)
Q Consensus 131 ~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~---------~ 201 (710)
.||+-++-...+. ++-..+||+|.||.- ..+.+|+.. +..+|..||+| +|+.+.- +
T Consensus 239 rGvTm~v~~~~fe-s~~~~~tliDaPGhk------------dFi~nmi~g-~sqaD~avLvv-d~s~~~FE~gfd~~gQt 303 (603)
T KOG0458|consen 239 RGVTMDVKTTWFE-SKSKIVTLIDAPGHK------------DFIPNMISG-ASQADVAVLVV-DASTGEFESGFDPGGQT 303 (603)
T ss_pred cceeEEeeeEEEe-cCceeEEEecCCCcc------------ccchhhhcc-ccccceEEEEE-ECCcchhhhccCCCCch
Confidence 3454444444444 445789999999942 134455433 33456556555 4443211 1
Q ss_pred hHHHHHHHhhCCCCCcEEEeeccccccCccccHHH
Q 005171 202 SDALQIAGIADPDGYRTIGIITKLDIMDRGTDARN 236 (710)
Q Consensus 202 ~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~ 236 (710)
.+...+++.+. -...|+++||+|+++=..+..+
T Consensus 304 rEha~llr~Lg--i~qlivaiNKmD~V~Wsq~RF~ 336 (603)
T KOG0458|consen 304 REHALLLRSLG--ISQLIVAINKMDLVSWSQDRFE 336 (603)
T ss_pred HHHHHHHHHcC--cceEEEEeecccccCccHHHHH
Confidence 22234555554 3678899999999975554433
No 365
>PRK01889 GTPase RsgA; Reviewed
Probab=96.29 E-value=0.0078 Score=66.20 Aligned_cols=24 Identities=42% Similarity=0.747 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
.++++|.+|+|||||+|+|+|..-
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcc
Confidence 699999999999999999999753
No 366
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=96.28 E-value=0.018 Score=63.86 Aligned_cols=132 Identities=14% Similarity=0.224 Sum_probs=76.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
....+|..---|||||-..|+... |..+ -.+.++.+-..++..-
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t------~~~~------------------------------~Rem~~Q~LDsMdiER 53 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELT------GGLS------------------------------EREMRAQVLDSMDIER 53 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHh------cCcC------------------------------hHHHHHHhhhhhhhHh
Confidence 346777788899999999998652 1101 1122222223333222
Q ss_pred CCCCcccccceEEEEecCC--ccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 128 GGNKGVSDKQIRLKIFSPH--VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~--~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
..+..+-...+++.....+ ...|.||||||-.+-. --+.+.+..+...+|+ ++|.+....+...
T Consensus 54 ERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs-------------YEVSRSLAACEGalLv-VDAsQGveAQTlA 119 (603)
T COG0481 54 ERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS-------------YEVSRSLAACEGALLV-VDASQGVEAQTLA 119 (603)
T ss_pred hcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE-------------EEehhhHhhCCCcEEE-EECccchHHHHHH
Confidence 2344455556666665543 3579999999975432 1122344555555555 5677777665543
Q ss_pred HHHHhhCCCCCcEEEeeccccccCc
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
..-..++ .+--+|-|+||+|+-..
T Consensus 120 N~YlAle-~~LeIiPViNKIDLP~A 143 (603)
T COG0481 120 NVYLALE-NNLEIIPVLNKIDLPAA 143 (603)
T ss_pred HHHHHHH-cCcEEEEeeecccCCCC
Confidence 3333333 35779999999999654
No 367
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.24 E-value=0.05 Score=57.85 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
-....|.|+|.+||||||||+.|++.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999886
No 368
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.0081 Score=58.20 Aligned_cols=69 Identities=14% Similarity=0.275 Sum_probs=47.0
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCC-cccch--HHHHHHHhhCCCCCcEEEeeccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS-DLANS--DALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~-d~~~~--~~l~la~~~dp~g~rtI~VlTK~ 225 (710)
.|.+||+-| ++..+.+...|...++.||.+|.+.+. .+..+ .-.++...=.-.|.+.++.+||-
T Consensus 70 ~l~fwdlgG-------------Qe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankq 136 (197)
T KOG0076|consen 70 PLSFWDLGG-------------QESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQ 136 (197)
T ss_pred eeEEEEcCC-------------hHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchh
Confidence 599999999 567889999999999966655544441 22222 11233333344589999999999
Q ss_pred cccCc
Q 005171 226 DIMDR 230 (710)
Q Consensus 226 Dl~~~ 230 (710)
|+-+.
T Consensus 137 d~q~~ 141 (197)
T KOG0076|consen 137 DLQNA 141 (197)
T ss_pred hhhhh
Confidence 98654
No 369
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.17 E-value=0.019 Score=54.98 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccC
Q 005171 174 IRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 174 i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
++++.+.++++++ ++++|+++.......+ ..+.+.+...+.+.++|+||+|+.+
T Consensus 2 ~~~~~~~i~~~aD-~vl~V~D~~~~~~~~~-~~l~~~~~~~~~p~iiv~NK~Dl~~ 55 (156)
T cd01859 2 WKRLVRRIIKESD-VVLEVLDARDPELTRS-RKLERYVLELGKKLLIVLNKADLVP 55 (156)
T ss_pred HHHHHHHHHhhCC-EEEEEeeCCCCcccCC-HHHHHHHHhCCCcEEEEEEhHHhCC
Confidence 5677788888887 6667777765443333 3444444445789999999999964
No 370
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.16 E-value=0.035 Score=61.32 Aligned_cols=77 Identities=26% Similarity=0.263 Sum_probs=51.6
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.++.||||.|=.... +++-+.++++ .-+-+|+ -+|+|++|. .-+++...|+.++..-.=|=+|+||.|-
T Consensus 183 ~DvvIvDTAGRl~id-----e~Lm~El~~I--k~~~~P~-E~llVvDam---~GQdA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 183 YDVVIVDTAGRLHID-----EELMDELKEI--KEVINPD-ETLLVVDAM---IGQDAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred CCEEEEeCCCccccc-----HHHHHHHHHH--HhhcCCC-eEEEEEecc---cchHHHHHHHHHhhhcCCceEEEEcccC
Confidence 479999999965442 3333333332 3344676 455555543 4578888899888776778889999999
Q ss_pred cCccccHH
Q 005171 228 MDRGTDAR 235 (710)
Q Consensus 228 ~~~~~~~~ 235 (710)
-..|-.+.
T Consensus 252 daRGGaAL 259 (451)
T COG0541 252 DARGGAAL 259 (451)
T ss_pred CCcchHHH
Confidence 87766554
No 371
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=96.10 E-value=1.7 Score=52.51 Aligned_cols=23 Identities=52% Similarity=0.690 Sum_probs=20.3
Q ss_pred EcCCCCcHHHHHHHHhCCCCCccC
Q 005171 53 VGSQSSGKSSVLEALVGRDFLPRG 76 (710)
Q Consensus 53 VG~qssGKSSLLnaL~G~~~lP~~ 76 (710)
+|.||+|||||||.|.|..| ++-
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~m 23 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DVM 23 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-ccc
Confidence 59999999999999999987 553
No 372
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.09 E-value=0.0063 Score=62.45 Aligned_cols=29 Identities=34% Similarity=0.363 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
++-+||=+|+||||++..|+|.. -|+.++
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~-s~vasy 89 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTF-SEVAAY 89 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCC-Cccccc
Confidence 57789999999999999999984 344443
No 373
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.82 E-value=0.12 Score=55.17 Aligned_cols=68 Identities=25% Similarity=0.360 Sum_probs=43.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCC--eEEEEEecCCCcccchHHH--HHHHhhCCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPS--CLILAVTPANSDLANSDAL--QIAGIADPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~--~iIL~V~~a~~d~~~~~~l--~la~~~dp~g~rtI~VlT 223 (710)
..++|||-||-. .+++.-|..+. ++.++|+++.....++.|. -+...+. +..++|+|
T Consensus 70 lq~tlvDCPGHa----------------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c---~klvvvin 130 (522)
T KOG0461|consen 70 LQFTLVDCPGHA----------------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC---KKLVVVIN 130 (522)
T ss_pred ceeEEEeCCCcH----------------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc---cceEEEEe
Confidence 468999999943 23333344332 2456677887777666553 3344443 57889999
Q ss_pred cccccCccccH
Q 005171 224 KLDIMDRGTDA 234 (710)
Q Consensus 224 K~Dl~~~~~~~ 234 (710)
|+|...++..+
T Consensus 131 kid~lpE~qr~ 141 (522)
T KOG0461|consen 131 KIDVLPENQRA 141 (522)
T ss_pred ccccccchhhh
Confidence 99999876543
No 374
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.77 E-value=0.07 Score=56.66 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEeccc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQT 92 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~ 92 (710)
-|-+||..--|||||..||+|.-.--. .--.++-+.+.|.+.
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvwT~~h--seElkRgitIkLGYA 53 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVWTDRH--SEELKRGITIKLGYA 53 (415)
T ss_pred Eeeeeeecccchhhheehhhceeeech--hHHHhcCcEEEeccc
Confidence 378999999999999999999742111 112455566666544
No 375
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=95.67 E-value=0.014 Score=65.50 Aligned_cols=41 Identities=41% Similarity=0.577 Sum_probs=32.9
Q ss_pred HHHHHHHhCCC-CCCCCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 32 LQDIFAQLGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 32 l~d~~~~~g~~-~~~~lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
|+...+.+|.. ..++.--|+|+|+||+|||||||.|.|..|
T Consensus 21 l~~F~q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 21 LDYFQQCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred HHHHHHHhcccccCcceeEEEEecCcccchHHHHHHHhccCh
Confidence 44444455643 568888999999999999999999999876
No 376
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.059 Score=57.55 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
-+.--|.|+|.||+|||+||+.|.+..
T Consensus 186 tdf~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHhccC
Confidence 566679999999999999999999874
No 377
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=0.1 Score=50.36 Aligned_cols=129 Identities=21% Similarity=0.270 Sum_probs=76.5
Q ss_pred HHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccC
Q 005171 32 LQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYD 111 (710)
Q Consensus 32 l~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d 111 (710)
..++++.+|.- -.--.+++.|--||||+|||+.|=.... +.-.+|--|+ .+ .
T Consensus 7 F~~VLq~LgL~--kK~gKllFlGLDNAGKTTLLHMLKdDrl---~qhvPTlHPT----------SE---~---------- 58 (193)
T KOG0077|consen 7 FSSVLQFLGLY--KKFGKLLFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPT----------SE---E---------- 58 (193)
T ss_pred HHHHHHHHHHh--ccCceEEEEeecCCchhhHHHHHccccc---cccCCCcCCC----------hH---H----------
Confidence 45667777742 2334799999999999999999965432 1122222220 00 0
Q ss_pred hhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEE
Q 005171 112 FSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILA 191 (710)
Q Consensus 112 ~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~ 191 (710)
+.|- ....|-+|+-|- .+.+.....|+...++|+..
T Consensus 59 ----------------------------l~Ig---~m~ftt~DLGGH-------------~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 59 ----------------------------LSIG---GMTFTTFDLGGH-------------LQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred ----------------------------heec---CceEEEEccccH-------------HHHHHHHHHHHhhhceeEee
Confidence 0111 135788999993 36678888999999977777
Q ss_pred EecCCCcc-cchH-HHHH-HHhhCCCCCcEEEeeccccccCccc
Q 005171 192 VTPANSDL-ANSD-ALQI-AGIADPDGYRTIGIITKLDIMDRGT 232 (710)
Q Consensus 192 V~~a~~d~-~~~~-~l~l-a~~~dp~g~rtI~VlTK~Dl~~~~~ 232 (710)
|..+.... ..+. .++. .....-...+.++..||+|.-....
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~s 138 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAAS 138 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCccc
Confidence 66554321 1111 0111 1111112478999999999975543
No 378
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=95.45 E-value=0.022 Score=61.49 Aligned_cols=170 Identities=24% Similarity=0.286 Sum_probs=89.9
Q ss_pred CcchHHHHHHHHHHHHHhCCCC---------------------CCCCC---EEEEEcCCCCcHHHHHHHHhCCCCCccCC
Q 005171 22 GGSVIPLVNKLQDIFAQLGSQS---------------------TIELP---QVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (710)
Q Consensus 22 ~~~l~~~~~kl~d~~~~~g~~~---------------------~~~lP---qIvVVG~qssGKSSLLnaL~G~~~lP~~~ 77 (710)
.+++.+.+.-|..+.+.+|... .-..| .+++.|...+|||||+-+|+--. |-+.
T Consensus 68 ~~~l~esievL~~la~evgA~i~~v~~~eg~~g~Vaev~vrr~~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~--~DDG 145 (527)
T COG5258 68 DEKLVESIEVLRELAREVGASIYIVRVHEGTDGYVAEVLVRRKTEEAPEHVLVGVAGHVDHGKSTLVGVLVTGR--LDDG 145 (527)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEEEEeccCcEEEEEEEEecccCCCceEEEEEeccccCCcceEEEEEEecC--CCCC
Confidence 4566667777777777766430 00123 37788999999999998886433 3333
Q ss_pred CccccceEEEEecccC----CCccceeeecCCCccc--cC-hhHHHHH-HHHhhhhhcCCCCcccccceEEEEecCCccc
Q 005171 78 DICTRRPLVLQLLQTK----TDEEYGEFLHLPGKRF--YD-FSEIRRE-IQAQTDKEAGGNKGVSDKQIRLKIFSPHVLD 149 (710)
Q Consensus 78 g~~Tr~p~~~~l~~~~----~~~~~~~~~~~~g~~~--~d-~~~i~~~-i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~ 149 (710)
.-.||..+-.+..... .+-.+..+-...|+.. .| +++-... +...++ .=
T Consensus 146 ~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~aD-----------------------kl 202 (527)
T COG5258 146 DGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKRAD-----------------------KL 202 (527)
T ss_pred CcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhhhcc-----------------------cE
Confidence 3345554433322111 1112222222223221 11 1111110 011111 13
Q ss_pred eEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--HHHHHHHhhCCCCCcEEEeeccccc
Q 005171 150 ITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 150 LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
+.||||-|-- .-.+..++..+...-+..|+|+.|+...... +-+-++-. .+-|+|+|+||+|+
T Consensus 203 VsfVDtvGHE------------pwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a---~~lPviVvvTK~D~ 267 (527)
T COG5258 203 VSFVDTVGHE------------PWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA---MELPVIVVVTKIDM 267 (527)
T ss_pred EEEEecCCcc------------HHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh---hcCCEEEEEEeccc
Confidence 7899999943 2444455555554444777888888765443 22333333 24799999999999
Q ss_pred cCcc
Q 005171 228 MDRG 231 (710)
Q Consensus 228 ~~~~ 231 (710)
.+..
T Consensus 268 ~~dd 271 (527)
T COG5258 268 VPDD 271 (527)
T ss_pred CcHH
Confidence 8753
No 379
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.17 E-value=0.029 Score=60.79 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=22.4
Q ss_pred CCCE--EEEEcCCCCcHHHHHHHHhCCCC
Q 005171 46 ELPQ--VAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 46 ~lPq--IvVVG~qssGKSSLLnaL~G~~~ 72 (710)
+-+| |.+||.+|+||||+||+|-...+
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhccc
Confidence 4444 67899999999999999987765
No 380
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.15 E-value=0.084 Score=61.17 Aligned_cols=22 Identities=45% Similarity=0.705 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+++||+.|||||||++.|+|.
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999996
No 381
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=94.99 E-value=0.084 Score=56.77 Aligned_cols=153 Identities=18% Similarity=0.227 Sum_probs=80.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
-.+-+++-+|+.--||||||-.|+--.- ...+=++..-.+... .+..+-...||.-+.+-++++-+
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk----------~i~eDQla~l~~dS~----~~~t~g~~~D~ALLvDGL~AERE 69 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTK----------AIYEDQLASLERDSK----RKGTQGEKIDLALLVDGLEAERE 69 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcch----------hhhHHHHHHHhcccc----cccCCCCccchhhhhhhhHHHHh
Confidence 3566899999999999999988875421 111111100000000 00001123455555555554433
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
.|++-++.. +.++-......+.||||- ++..++|+... .-++..|| +++|...+-.+.-
T Consensus 70 ------QGITIDVAY-RyFsT~KRkFIiADTPGH------------eQYTRNMaTGA-STadlAIl-LVDAR~Gvl~QTr 128 (431)
T COG2895 70 ------QGITIDVAY-RYFSTEKRKFIIADTPGH------------EQYTRNMATGA-STADLAIL-LVDARKGVLEQTR 128 (431)
T ss_pred ------cCceEEEEe-eecccccceEEEecCCcH------------HHHhhhhhccc-ccccEEEE-EEecchhhHHHhH
Confidence 334333322 223344468999999993 24566665432 23443444 4567766655442
Q ss_pred H-HHHHhhCCCCC-cEEEeeccccccCccccH
Q 005171 205 L-QIAGIADPDGY-RTIGIITKLDIMDRGTDA 234 (710)
Q Consensus 205 l-~la~~~dp~g~-rtI~VlTK~Dl~~~~~~~ 234 (710)
. ..+-.+ .|. .+++.+||+|+++-.++.
T Consensus 129 RHs~I~sL--LGIrhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 129 RHSFIASL--LGIRHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred HHHHHHHH--hCCcEEEEEEeeecccccCHHH
Confidence 2 122222 244 466779999999866543
No 382
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=0.039 Score=59.81 Aligned_cols=75 Identities=31% Similarity=0.261 Sum_probs=45.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHH--HHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTM--IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~l--v~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~ 225 (710)
.+++||||-|-... .. ..+.+| +.+.+. |+ -|++|++|+..-+ +...++.+...-.-+-+++||+
T Consensus 184 fdvIIvDTSGRh~q-----e~---sLfeEM~~v~~ai~-Pd-~vi~VmDasiGQa---ae~Qa~aFk~~vdvg~vIlTKl 250 (483)
T KOG0780|consen 184 FDVIIVDTSGRHKQ-----EA---SLFEEMKQVSKAIK-PD-EIIFVMDASIGQA---AEAQARAFKETVDVGAVILTKL 250 (483)
T ss_pred CcEEEEeCCCchhh-----hH---HHHHHHHHHHhhcC-CC-eEEEEEeccccHh---HHHHHHHHHHhhccceEEEEec
Confidence 47999999996532 22 234444 234454 55 5777788775543 3344444443334466889999
Q ss_pred cccCccccHH
Q 005171 226 DIMDRGTDAR 235 (710)
Q Consensus 226 Dl~~~~~~~~ 235 (710)
|-...|-.+.
T Consensus 251 DGhakGGgAl 260 (483)
T KOG0780|consen 251 DGHAKGGGAL 260 (483)
T ss_pred ccCCCCCcee
Confidence 9987766543
No 383
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.79 E-value=0.026 Score=55.58 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=24.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~ 77 (710)
+++|+|..+||||||||-|.|-.. |.+.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~-P~~G 54 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET-PASG 54 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC-CCCc
Confidence 589999999999999999999864 6653
No 384
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.76 E-value=0.083 Score=58.02 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
..++|+|||+..||||||...|+++
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHH
Confidence 5678999999999999998887765
No 385
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=0.14 Score=48.40 Aligned_cols=70 Identities=20% Similarity=0.274 Sum_probs=49.2
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc---ccchHHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD---LANSDALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d---~~~~~~l~la~~~dp~g~rtI~VlTK 224 (710)
....++|+-|=+ .++-..+.|..+.+++|++|.+++.| .+..+...++++-.-.+...+++.||
T Consensus 62 Lk~~vwdLggqt-------------SirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anK 128 (182)
T KOG0072|consen 62 LKFQVWDLGGQT-------------SIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANK 128 (182)
T ss_pred ccceeeEccCcc-------------cccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEecc
Confidence 468999999854 34566778999999999888887754 33333344555444446778888999
Q ss_pred ccccCc
Q 005171 225 LDIMDR 230 (710)
Q Consensus 225 ~Dl~~~ 230 (710)
.|....
T Consensus 129 qD~~~~ 134 (182)
T KOG0072|consen 129 QDYSGA 134 (182)
T ss_pred ccchhh
Confidence 998543
No 386
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=94.61 E-value=0.17 Score=50.27 Aligned_cols=54 Identities=13% Similarity=0.077 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 173 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.++.++..|+++++ +||+|+++........ ..+... ..+.++++|+||+|+.++
T Consensus 23 ~~~~~l~~~~~~ad-~il~VvD~~~~~~~~~-~~l~~~--~~~~~~ilV~NK~Dl~~~ 76 (190)
T cd01855 23 FILNLLSSISPKKA-LVVHVVDIFDFPGSLI-PRLRLF--GGNNPVILVGNKIDLLPK 76 (190)
T ss_pred HHHHHHHhcccCCc-EEEEEEECccCCCccc-hhHHHh--cCCCcEEEEEEchhcCCC
Confidence 46888999999998 6666667654322211 222122 235899999999999754
No 387
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.55 E-value=0.085 Score=50.69 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=33.4
Q ss_pred HHHhcCCCeEEEEEecCCCcccch--HHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 179 MSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 179 ~~yi~~~~~iIL~V~~a~~d~~~~--~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+.+.++| +|++|+++....... ...+.++.. ..+.+.|+|+||+|++++
T Consensus 3 ~~~l~~aD-~il~VvD~~~p~~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~ 54 (157)
T cd01858 3 YKVIDSSD-VVIQVLDARDPMGTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPT 54 (157)
T ss_pred hHhhhhCC-EEEEEEECCCCccccCHHHHHHHHhc-cCCCCEEEEEEchhcCCH
Confidence 45567787 888888887654432 223344332 235899999999999854
No 388
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.42 E-value=0.035 Score=56.86 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCC-CcccchH-HHHHHHhhCCCCCcEEEeeccccc
Q 005171 171 EARIRTMIMSYIKQPSCLILAVTPAN-SDLANSD-ALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 171 ~~~i~~lv~~yi~~~~~iIL~V~~a~-~d~~~~~-~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
++|--.+++..+.+|. +||+=-|.. -|..+.+ .+.+++++......|++++|+=..
T Consensus 147 qqQRVAIARAL~~~P~-iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~ 204 (226)
T COG1136 147 QQQRVAIARALINNPK-IILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE 204 (226)
T ss_pred HHHHHHHHHHHhcCCC-eEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 3455556666677776 787754443 3444443 367888887666779999997443
No 389
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.42 E-value=0.042 Score=44.63 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
-.+|.|+.+|||||+|.||.=
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 390
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=94.26 E-value=0.02 Score=62.09 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=79.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
..|.|+...-+||+|+-+.|+-..-.-+..| + -..|.+.+||-.+.++
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g------------~-----------vddgdtvtdfla~ere--------- 85 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAG------------D-----------VDDGDTVTDFLAIERE--------- 85 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhccc------------c-----------cCCCchHHHHHHHHHh---------
Confidence 3477888889999999999874421001111 0 0125556666555433
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (710)
.+..+-...+.+.+.| ..+.||||||-.+-. -+ +.+.++--+ -+++|.++......+. +..
T Consensus 86 -rgitiqsaav~fdwkg---~rinlidtpghvdf~-----le--------verclrvld-gavav~dasagve~qt-ltv 146 (753)
T KOG0464|consen 86 -RGITIQSAAVNFDWKG---HRINLIDTPGHVDFR-----LE--------VERCLRVLD-GAVAVFDASAGVEAQT-LTV 146 (753)
T ss_pred -cCceeeeeeeeccccc---ceEeeecCCCcceEE-----EE--------HHHHHHHhc-CeEEEEeccCCcccce-eee
Confidence 1112222222333332 468999999975432 11 223333333 4667777776665554 667
Q ss_pred HHhhCCCCCcEEEeeccccccCcc
Q 005171 208 AGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 208 a~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
.++.|....+.++.+||+|.....
T Consensus 147 wrqadk~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 147 WRQADKFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred ehhccccCCchhhhhhhhhhhhhh
Confidence 788888889999999999997543
No 391
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.09 E-value=0.047 Score=51.58 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005171 50 VAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~ 70 (710)
|+|+|.+++|||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999975
No 392
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=94.09 E-value=0.23 Score=59.79 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+|||..|||||||++.|+|.
T Consensus 507 ~vaIvG~sGsGKSTLlklL~gl 528 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAKLVAGL 528 (710)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999997
No 393
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.04 E-value=0.04 Score=51.30 Aligned_cols=23 Identities=52% Similarity=0.697 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++|+|..|+||||||++|+|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 48999999999999999999984
No 394
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=93.96 E-value=0.22 Score=48.59 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 174 IRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 174 i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+.+.+.+.++++| +||+|+++.......+ ..+...+. ++++|+|+||+|+.++
T Consensus 9 ~~~~~~~~i~~aD-~il~v~D~~~~~~~~~-~~i~~~~~--~k~~ilVlNK~Dl~~~ 61 (171)
T cd01856 9 ALRQIKEKLKLVD-LVIEVRDARIPLSSRN-PLLEKILG--NKPRIIVLNKADLADP 61 (171)
T ss_pred HHHHHHHHHhhCC-EEEEEeeccCccCcCC-hhhHhHhc--CCCEEEEEehhhcCCh
Confidence 3444578899998 7888888875544333 23344432 4789999999999743
No 395
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.92 E-value=0.046 Score=55.17 Aligned_cols=27 Identities=41% Similarity=0.647 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~ 76 (710)
-|.|+|..|||||||+|+|.|.- .|.+
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l-~~t~ 60 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDL-KPTS 60 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCcc-ccCC
Confidence 49999999999999999999983 3443
No 396
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=93.79 E-value=0.29 Score=53.01 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+|-.+|.|--|||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4688999999999999999999854
No 397
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.77 E-value=0.082 Score=56.73 Aligned_cols=96 Identities=23% Similarity=0.226 Sum_probs=54.6
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHH---HHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEAR---IRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~---i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK 224 (710)
.++.|+||.|=-.+. .++-.. +...+...+..+..-+|+|.+|.. .++++.-++.+...-.=+=+|+||
T Consensus 222 ~DvvliDTAGRLhnk-----~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt---Gqnal~QAk~F~eav~l~GiIlTK 293 (340)
T COG0552 222 IDVVLIDTAGRLHNK-----KNLMDELKKIVRVIKKDDPDAPHEILLVLDATT---GQNALSQAKIFNEAVGLDGIILTK 293 (340)
T ss_pred CCEEEEeCcccccCc-----hhHHHHHHHHHHHhccccCCCCceEEEEEEccc---ChhHHHHHHHHHHhcCCceEEEEe
Confidence 479999999965432 233333 334444444433335777777654 345566666665554456789999
Q ss_pred ccccCccccHHHHHhCCccccccceEEEE
Q 005171 225 LDIMDRGTDARNLLLGKVIPLRLGYVGVV 253 (710)
Q Consensus 225 ~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~ 253 (710)
+|--..|--...+.. ...+..-|+||-
T Consensus 294 lDgtAKGG~il~I~~--~l~~PI~fiGvG 320 (340)
T COG0552 294 LDGTAKGGIILSIAY--ELGIPIKFIGVG 320 (340)
T ss_pred cccCCCcceeeeHHH--HhCCCEEEEeCC
Confidence 997666543322221 123344566653
No 398
>PRK13695 putative NTPase; Provisional
Probab=93.75 E-value=0.76 Score=44.89 Aligned_cols=22 Identities=14% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+++|..++|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998765
No 399
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.75 E-value=0.049 Score=56.22 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
-|++||++|+|||||||.|.|..-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 499999999999999999999863
No 400
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.72 E-value=0.093 Score=55.86 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+++|..|+||||++..|...
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999865
No 401
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=93.70 E-value=0.73 Score=50.45 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+|-.+|.|--|||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4688999999999999999999854
No 402
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=93.69 E-value=0.25 Score=47.36 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=28.8
Q ss_pred EEEEEecCCCcccchHHHHHH-HhhCCCCCcEEEeeccccccCc
Q 005171 188 LILAVTPANSDLANSDALQIA-GIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 188 iIL~V~~a~~d~~~~~~l~la-~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++|+|+++.......+ ..+. ..+...+.++|+|+||+|+.++
T Consensus 2 vvl~VvD~~~p~~~~~-~~i~~~~~~~~~~p~IiVlNK~Dl~~~ 44 (155)
T cd01849 2 VILEVLDARDPLGTRS-PDIERVLIKEKGKKLILVLNKADLVPK 44 (155)
T ss_pred EEEEEEeccCCccccC-HHHHHHHHhcCCCCEEEEEechhcCCH
Confidence 6788888876544433 2333 3444567999999999999753
No 403
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.53 E-value=0.23 Score=50.90 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=36.7
Q ss_pred ceEEEeC-CCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH-HHHHHhhCCCCCcEEEeecccc
Q 005171 149 DITLVDL-PGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-LQIAGIADPDGYRTIGIITKLD 226 (710)
Q Consensus 149 ~LtLVDt-PGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-l~la~~~dp~g~rtI~VlTK~D 226 (710)
++++||| .|+- .+-+.-++..|.+|++|.+....+.+++- .+|+.++. -+|+.+|+||+|
T Consensus 135 e~VivDtEAGiE----------------HfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg--~k~i~~V~NKv~ 196 (255)
T COG3640 135 EVVIVDTEAGIE----------------HFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELG--IKRIFVVLNKVD 196 (255)
T ss_pred cEEEEecccchh----------------hhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC--CceEEEEEeecc
Confidence 5778887 4542 22334456677444444444444555432 34555554 389999999999
Q ss_pred cc
Q 005171 227 IM 228 (710)
Q Consensus 227 l~ 228 (710)
..
T Consensus 197 e~ 198 (255)
T COG3640 197 EE 198 (255)
T ss_pred ch
Confidence 65
No 404
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.50 E-value=0.062 Score=53.38 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|+|.++|||||++++|+|.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3999999999999999999986
No 405
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=93.49 E-value=0.11 Score=56.00 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=44.9
Q ss_pred EEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc--cchHHHHHHHhhCCCCCc
Q 005171 140 LKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL--ANSDALQIAGIADPDGYR 217 (710)
Q Consensus 140 l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~--~~~~~l~la~~~dp~g~r 217 (710)
++|+.....-+||||+.|-.+ .++..+...-.+..+.-.+.+-+|..+ .+.+-+-+|-.+ ..+
T Consensus 211 vkIce~saKviTFIDLAGHEk------------YLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL---~VP 275 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEK------------YLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALAL---HVP 275 (641)
T ss_pred eeeccccceeEEEEeccchhh------------hhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhh---cCc
Confidence 455555555689999999432 222222222222223445555666554 334445555554 379
Q ss_pred EEEeeccccccCcc
Q 005171 218 TIGIITKLDIMDRG 231 (710)
Q Consensus 218 tI~VlTK~Dl~~~~ 231 (710)
+++|+||+|.....
T Consensus 276 VfvVVTKIDMCPAN 289 (641)
T KOG0463|consen 276 VFVVVTKIDMCPAN 289 (641)
T ss_pred EEEEEEeeccCcHH
Confidence 99999999998753
No 406
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.42 E-value=0.11 Score=49.17 Aligned_cols=52 Identities=10% Similarity=0.229 Sum_probs=35.0
Q ss_pred HHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCC--CCCcEEEeeccccccCc
Q 005171 177 MIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADP--DGYRTIGIITKLDIMDR 230 (710)
Q Consensus 177 lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp--~g~rtI~VlTK~Dl~~~ 230 (710)
.+.+.+.++| +||+|+++.......+ ..+.+.+.. .+++.++|+||+|+.++
T Consensus 4 ~~~~~i~~aD-~vl~ViD~~~p~~~~~-~~l~~~l~~~~~~k~~iivlNK~DL~~~ 57 (141)
T cd01857 4 QLWRVVERSD-IVVQIVDARNPLLFRP-PDLERYVKEVDPRKKNILLLNKADLLTE 57 (141)
T ss_pred HHHHHHhhCC-EEEEEEEccCCcccCC-HHHHHHHHhccCCCcEEEEEechhcCCH
Confidence 3567788888 6777778876655443 233333332 36899999999999754
No 407
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.40 E-value=0.077 Score=51.99 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+|+|..+||||||++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 3899999999999999999985
No 408
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=93.40 E-value=0.15 Score=59.56 Aligned_cols=65 Identities=20% Similarity=0.241 Sum_probs=43.6
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.-+.|||+||-.+- ...+....+-+| .-|+.+++......+. ..++|++--.+.+.|.|+||+|.
T Consensus 72 ~~~nlidspghvdf-------------~sevssas~l~d-~alvlvdvvegv~~qt-~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 72 YLINLIDSPGHVDF-------------SSEVSSASRLSD-GALVLVDVVEGVCSQT-YAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred eEEEEecCCCccch-------------hhhhhhhhhhcC-CcEEEEeeccccchhH-HHHHHHHHHccCceEEEEehhhh
Confidence 35899999997632 223333344454 3445556666665544 67778776778999999999994
No 409
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.35 E-value=0.29 Score=57.51 Aligned_cols=25 Identities=44% Similarity=0.727 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~ 75 (710)
.++|||+.|||||||++.|+|.- |.
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~--p~ 402 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL--PY 402 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CC
Confidence 59999999999999999999973 65
No 410
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=93.32 E-value=0.38 Score=50.96 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=35.5
Q ss_pred HHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 176 TMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 176 ~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
..+.+.+..+| +||+|+++.......+ ..+.+.+. +++.|+|+||+|+.++
T Consensus 13 ~~~~~~l~~aD-vVl~V~Dar~p~~~~~-~~i~~~l~--~kp~IiVlNK~DL~~~ 63 (276)
T TIGR03596 13 REIKEKLKLVD-VVIEVLDARIPLSSRN-PMIDEIRG--NKPRLIVLNKADLADP 63 (276)
T ss_pred HHHHHHHhhCC-EEEEEEeCCCCCCCCC-hhHHHHHC--CCCEEEEEEccccCCH
Confidence 34567788888 7888888876554433 33444442 5799999999999753
No 411
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.31 E-value=0.067 Score=50.83 Aligned_cols=23 Identities=39% Similarity=0.768 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
|.|.|||..++|||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999865
No 412
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.30 E-value=0.052 Score=52.51 Aligned_cols=22 Identities=36% Similarity=0.773 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
+|+|+|..|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5999999999999999999855
No 413
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.22 E-value=0.95 Score=44.29 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.|++.|+.|+|||+|+..+....
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 59999999999999999998763
No 414
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=93.12 E-value=1.2 Score=48.35 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=29.2
Q ss_pred HHHHHHHhCCC---CCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 32 LQDIFAQLGSQ---STIELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 32 l~d~~~~~g~~---~~~~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
|+-.+...+.+ +.-..|+++|||+..+|||||...|+..
T Consensus 85 lH~ale~~R~~~e~~~~~GPrv~vVGp~d~GKsTl~r~L~ny 126 (415)
T KOG2749|consen 85 LHAALEKRRMQAEEESSYGPRVMVVGPTDVGKSTLCRILLNY 126 (415)
T ss_pred HHHHHHHHhhhhhhhhccCCEEEEECCCccchHHHHHHHHHH
Confidence 44444444433 3446999999999999999999999865
No 415
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.10 E-value=0.083 Score=51.58 Aligned_cols=30 Identities=30% Similarity=0.587 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCcc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~ 80 (710)
-+.|||..+|||||||++|.++ ++-+.|.+
T Consensus 34 VLgiVGESGSGKtTLL~~is~r--l~p~~G~v 63 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGR--LTPDAGTV 63 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcc--cCCCCCeE
Confidence 5799999999999999999998 35555543
No 416
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.07 E-value=0.06 Score=53.20 Aligned_cols=35 Identities=31% Similarity=0.498 Sum_probs=25.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCccCCCccccce
Q 005171 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p 84 (710)
|++.|+.|+|||||+.+|+...-+-.+...+||.|
T Consensus 7 ~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~p 41 (191)
T COG0194 7 IVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKP 41 (191)
T ss_pred EEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCC
Confidence 89999999999999999998752222333344443
No 417
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.06 E-value=0.081 Score=53.07 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC-CCccCCCccccce
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD-FLPRGNDICTRRP 84 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~-~lP~~~g~~Tr~p 84 (710)
-|+|+|.+|||||||++.|.+.- -+......+||.|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 48999999999999999999862 1122233455555
No 418
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=92.85 E-value=0.47 Score=56.86 Aligned_cols=22 Identities=50% Similarity=0.715 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+|||..|||||||++.|+|.
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl 502 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGF 502 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999997
No 419
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.82 E-value=0.1 Score=52.55 Aligned_cols=28 Identities=36% Similarity=0.412 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
.++++|..|||||||++.|+|.. |...|
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 56 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL--GPTSG 56 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 48999999999999999999973 44444
No 420
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=92.66 E-value=0.64 Score=51.57 Aligned_cols=168 Identities=17% Similarity=0.212 Sum_probs=91.7
Q ss_pred HHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccc
Q 005171 30 NKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF 109 (710)
Q Consensus 30 ~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~ 109 (710)
|-.+|+..+.|-..+ |.|||+.-+||||+|..++..-++|.-.+.--|.-..=.|.+. ..|++.
T Consensus 5 ~iykDIa~RT~GdIY-----iGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS-----------~aGktI 68 (492)
T PF09547_consen 5 DIYKDIAERTGGDIY-----IGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQS-----------GAGKTI 68 (492)
T ss_pred hHHHHHHHhcCCceE-----EEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcC-----------CCCCce
Confidence 456677777775443 8999999999999999999887777654321111000000000 012211
Q ss_pred cChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCC-cCCCCCCch-------------H--HHHH
Q 005171 110 YDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGIT-KVPVGEQPA-------------D--IEAR 173 (710)
Q Consensus 110 ~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~-~~~~~~q~~-------------d--i~~~ 173 (710)
.+-..+-+....+.+.+......++-|||--|+. ..+.|.... . ..+.
T Consensus 69 ----------------mTTEPKFiP~eAv~I~l~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eA 132 (492)
T PF09547_consen 69 ----------------MTTEPKFIPNEAVEITLDDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEA 132 (492)
T ss_pred ----------------eccCCcccCCcceEEEecCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHH
Confidence 0111233444556677766666688899998874 222222111 1 1111
Q ss_pred HHHHHHHHhcCCCeEEEEEe-cCC-CcccchHH----HHHHHhhCCCCCcEEEeeccccccC
Q 005171 174 IRTMIMSYIKQPSCLILAVT-PAN-SDLANSDA----LQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 174 i~~lv~~yi~~~~~iIL~V~-~a~-~d~~~~~~----l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.+==+++-|....+|=++|+ +.+ .++...+- -+...++..-|+|.++|+|-.+--.
T Consensus 133 AeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s 194 (492)
T PF09547_consen 133 AEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYS 194 (492)
T ss_pred HhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCC
Confidence 11123455665555655554 333 23333221 3456777777899999998765443
No 421
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.61 E-value=0.1 Score=52.89 Aligned_cols=28 Identities=39% Similarity=0.455 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
.++|+|..|||||||++.|+|. +|...|
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G 59 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL--DRPTSG 59 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC--cCCCce
Confidence 5899999999999999999997 344444
No 422
>PLN03232 ABC transporter C family member; Provisional
Probab=92.53 E-value=0.61 Score=60.84 Aligned_cols=22 Identities=41% Similarity=0.767 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|||+.|||||||+++|+|.
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~ 666 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGE 666 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5999999999999999999997
No 423
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=92.48 E-value=0.43 Score=50.18 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
+--|.|+|.+-+|||.|+|.|+|.
T Consensus 21 v~vvsi~G~~rtGKSfLln~l~~~ 44 (260)
T PF02263_consen 21 VAVVSIVGPYRTGKSFLLNQLLGP 44 (260)
T ss_dssp EEEEEEEEETTSSHHHHHHHHCCB
T ss_pred EEEEEeecCCccchHHHHHHHhcc
Confidence 345889999999999999999984
No 424
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.47 E-value=0.13 Score=51.20 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+|+|++|||||||++.|+..
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999875
No 425
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.38 E-value=0.11 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~ 68 (710)
+.|-|+|+|.+||||||+.+.|.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999999998
No 426
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=92.35 E-value=0.57 Score=49.95 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=35.7
Q ss_pred HHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 176 TMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 176 ~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
..+.+.+..+| +||+|+++...+...+ ..+.+.+. +++.|+|+||+|+.+.
T Consensus 16 ~~l~~~l~~aD-vIL~VvDar~p~~~~~-~~l~~~~~--~kp~iiVlNK~DL~~~ 66 (287)
T PRK09563 16 REIKENLKLVD-VVIEVLDARIPLSSEN-PMIDKIIG--NKPRLLILNKSDLADP 66 (287)
T ss_pred HHHHHHhhhCC-EEEEEEECCCCCCCCC-hhHHHHhC--CCCEEEEEEchhcCCH
Confidence 34567788888 7888888876655443 22333332 6889999999999753
No 427
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.29 E-value=0.11 Score=56.77 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~T 81 (710)
.|+|+|.+||||||++++|++. +|.+..++|
T Consensus 164 nilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 4999999999999999999986 365544433
No 428
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=92.29 E-value=2 Score=43.08 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005171 49 QVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~ 68 (710)
.++++|+.++||||||..|.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999988
No 429
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.20 E-value=0.61 Score=39.69 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005171 50 VAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~ 70 (710)
|++.|..|+|||++...|...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999999998653
No 430
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=92.20 E-value=0.13 Score=58.86 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=24.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
-.+++||..|+|||||++.|+|. +|-..|
T Consensus 348 ~~talvG~SGaGKSTLl~lL~G~--~~~~~G 376 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLLGF--LAPTQG 376 (559)
T ss_pred cEEEEECCCCCCHHHHHHHHhCc--CCCCCc
Confidence 36999999999999999999995 454444
No 431
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=92.18 E-value=0.78 Score=55.30 Aligned_cols=22 Identities=45% Similarity=0.524 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+++||+.|+|||||++.|.|.
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5999999999999999999996
No 432
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.14 E-value=0.12 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.640 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++|+|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 37899999999999999999973
No 433
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.12 E-value=0.89 Score=48.51 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=52.2
Q ss_pred eEEEeCCCCCcC-C---CCCCchHHHHHHHHHHHHHhcCCCeEEEE--EecCCCcccchHHHHHHHhhCCCCCcEEEeec
Q 005171 150 ITLVDLPGITKV-P---VGEQPADIEARIRTMIMSYIKQPSCLILA--VTPANSDLANSDALQIAGIADPDGYRTIGIIT 223 (710)
Q Consensus 150 LtLVDtPGl~~~-~---~~~q~~di~~~i~~lv~~yi~~~~~iIL~--V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlT 223 (710)
|.+|.+++-.+. | .++| ++--.+++....+|. |+|| .++|-+.-+++..+.+++.+.....=||+.+|
T Consensus 126 LelVgL~dk~~~yP~qLSGGQ-----KQRVaIARALa~~P~-iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlIT 199 (339)
T COG1135 126 LELVGLSDKADRYPAQLSGGQ-----KQRVAIARALANNPK-ILLCDEATSALDPETTQSILELLKDINRELGLTIVLIT 199 (339)
T ss_pred HHHcCChhhhccCchhcCcch-----hhHHHHHHHHhcCCC-EEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 455666654322 1 2443 344445555556775 6666 34444556667779999999888788999988
Q ss_pred cccccCccccHHHHHhCCccccccceEE
Q 005171 224 KLDIMDRGTDARNLLLGKVIPLRLGYVG 251 (710)
Q Consensus 224 K~Dl~~~~~~~~~~l~~~~~~l~lG~~~ 251 (710)
+ .-+..+-+.+++.-+..|-+.
T Consensus 200 H------Em~Vvk~ic~rVavm~~G~lv 221 (339)
T COG1135 200 H------EMEVVKRICDRVAVLDQGRLV 221 (339)
T ss_pred c------hHHHHHHHhhhheEeeCCEEE
Confidence 6 112233344555555555553
No 434
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.12 E-value=0.12 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58999999999999999999973
No 435
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.09 E-value=0.15 Score=52.39 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
.++++|..|||||||++.|.|.- |...|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 60 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE--RPTSG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58999999999999999999973 44444
No 436
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.03 E-value=0.13 Score=51.15 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..|||||||++.|.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 437
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.99 E-value=0.14 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 438
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.96 E-value=0.13 Score=52.89 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|+|..|||||||++.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999997
No 439
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=91.96 E-value=0.14 Score=55.04 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~ 79 (710)
.++++|..|||||||++.|.|. +|-..|.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl--~~p~~G~ 63 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNAL--LLPDTGT 63 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCC--CCCCCcE
Confidence 5999999999999999999997 3444453
No 440
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.92 E-value=0.12 Score=52.28 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++++|..|||||||++.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999997
No 441
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.87 E-value=0.16 Score=50.69 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..|+|||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 442
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.87 E-value=0.17 Score=50.04 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 443
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.85 E-value=0.13 Score=51.95 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
.++++|..|+|||||++.|.|. +|...|
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G 54 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL--TPPSSG 54 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC--CCCCcc
Confidence 6999999999999999999996 344444
No 444
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.84 E-value=0.16 Score=51.89 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
.++|+|..|+|||||++.|.|.. |-..|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 58 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY--DPQKG 58 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCC
Confidence 48999999999999999999973 44444
No 445
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=91.83 E-value=0.29 Score=39.08 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=30.1
Q ss_pred HHHHHHhcCCCeEEEEEecCCC--cccchHHHHHHHhhCCC--CCcEEEeecccc
Q 005171 176 TMIMSYIKQPSCLILAVTPANS--DLANSDALQIAGIADPD--GYRTIGIITKLD 226 (710)
Q Consensus 176 ~lv~~yi~~~~~iIL~V~~a~~--d~~~~~~l~la~~~dp~--g~rtI~VlTK~D 226 (710)
......+++-.+.||++.+... +.+-.+-+.+.+++.+. ++|.+.|+||+|
T Consensus 4 ~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 4 MQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 3444566666678888887763 33334446677777665 689999999998
No 446
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.83 E-value=0.16 Score=50.69 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..|+|||||++.|.|..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 447
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=91.83 E-value=0.17 Score=52.22 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|+|..|||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999997
No 448
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.80 E-value=0.13 Score=51.97 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..|||||||++.|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 449
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.80 E-value=0.14 Score=52.16 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++++|..|||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999997
No 450
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=91.79 E-value=0.17 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 451
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.78 E-value=0.17 Score=50.79 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
-.++++|..|+|||||++.|.|..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999999974
No 452
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.78 E-value=0.58 Score=53.30 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 171 EARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 171 ~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+.|--.+.+..++++. |++...|+..+.. .+.+++.... -.++-+|.|+-..|++..
T Consensus 492 ekQrvslaRa~lKda~--Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~ll~~ 551 (591)
T KOG0057|consen 492 EKQRVSLARAFLKDAP--ILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLDLLKD 551 (591)
T ss_pred hHHHHHHHHHHhcCCC--eEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecchhHhc
Confidence 4566677788888886 5555555544432 2334444442 235666778888887653
No 453
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.77 E-value=0.17 Score=51.23 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCCeEEEE--EecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceE
Q 005171 173 RIRTMIMSYIKQPSCLILA--VTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYV 250 (710)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~--V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~ 250 (710)
|--.+++...-+|+ ++|+ .++|-...-..+.+...+.+...| -|++|+|+= -.-..-..++++.+..|.+
T Consensus 143 QRVAIARALaM~P~-vmLFDEPTSALDPElv~EVL~vm~~LA~eG-mTMivVTHE------M~FAr~VadrviFmd~G~i 214 (240)
T COG1126 143 QRVAIARALAMDPK-VMLFDEPTSALDPELVGEVLDVMKDLAEEG-MTMIIVTHE------MGFAREVADRVIFMDQGKI 214 (240)
T ss_pred HHHHHHHHHcCCCC-EEeecCCcccCCHHHHHHHHHHHHHHHHcC-CeEEEEech------hHHHHHhhheEEEeeCCEE
Confidence 33344444455776 7777 445545555566678888887776 677777751 1112234466677777766
Q ss_pred EEEc
Q 005171 251 GVVN 254 (710)
Q Consensus 251 ~V~n 254 (710)
....
T Consensus 215 ie~g 218 (240)
T COG1126 215 IEEG 218 (240)
T ss_pred EEec
Confidence 5543
No 454
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=91.75 E-value=0.18 Score=49.12 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 28 LVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 28 ~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+++|.+.+. ....-+.+-++|+|..|+|||+|++++...
T Consensus 8 e~~~l~~~l~---~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 8 EIERLRDLLD---AAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp HHHHHHHTTG---GTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555443 122345578999999999999999998765
No 455
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.74 E-value=0.14 Score=50.61 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.++|+|+.|+||||||+.|++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999999863
No 456
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.71 E-value=0.16 Score=51.34 Aligned_cols=27 Identities=37% Similarity=0.708 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRG 76 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~ 76 (710)
.++|+|+.||||||||.+|+|. +.|.+
T Consensus 29 v~ailGPNGAGKSTlLk~LsGe-l~p~~ 55 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGE-LSPDS 55 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCc-cCCCC
Confidence 5899999999999999999998 44443
No 457
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.71 E-value=0.14 Score=51.69 Aligned_cols=22 Identities=18% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++++|..|||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999997
No 458
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=91.70 E-value=0.14 Score=55.63 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
-++++|+.||||||||+.|.|..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999986
No 459
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=91.70 E-value=0.14 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999973
No 460
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=91.68 E-value=0.16 Score=47.11 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=51.5
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCC-cccc-hHHHHHHHhhCCCCCcEEEeeccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS-DLAN-SDALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~-d~~~-~~~l~la~~~dp~g~rtI~VlTK~ 225 (710)
..|.+|||.| ++.++..+-.|.+.+++++|+..-+|. .+.| +.++.-+.++.........+-||+
T Consensus 47 vklqiwdtag-------------qerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~ 113 (192)
T KOG0083|consen 47 VKLQIWDTAG-------------QERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKC 113 (192)
T ss_pred EEEEEeeccc-------------hHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhcccc
Confidence 4699999999 678999999999999988777655553 2333 233455566655566778899999
Q ss_pred cccCc
Q 005171 226 DIMDR 230 (710)
Q Consensus 226 Dl~~~ 230 (710)
|+..+
T Consensus 114 d~a~e 118 (192)
T KOG0083|consen 114 DLAHE 118 (192)
T ss_pred ccchh
Confidence 99653
No 461
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=91.66 E-value=0.15 Score=52.39 Aligned_cols=28 Identities=36% Similarity=0.377 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
.++|+|..|||||||++.|.|.- |-..|
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~--~~~~G 58 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY--DPTSG 58 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC--CCCCC
Confidence 58999999999999999999973 44444
No 462
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=91.65 E-value=0.16 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|+|..|+|||||++.|.|.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999997
No 463
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.58 E-value=0.19 Score=48.27 Aligned_cols=30 Identities=37% Similarity=0.446 Sum_probs=24.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~ 79 (710)
..++++|..++|||||+++|.|.- +...|.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~ 55 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGE 55 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccE
Confidence 368999999999999999999973 444443
No 464
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.57 E-value=0.15 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++|+|..||||||||+.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 465
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.55 E-value=0.16 Score=49.33 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999974
No 466
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.54 E-value=0.14 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||+++|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999973
No 467
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=91.53 E-value=0.18 Score=52.80 Aligned_cols=21 Identities=38% Similarity=0.718 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005171 50 VAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~ 70 (710)
++++|+.||||||||.+|.|.
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 899999999999999999996
No 468
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=91.53 E-value=0.18 Score=51.28 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCcc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~ 80 (710)
.++++|+.|||||||++.|+|.. |-.+|.+
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i 44 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD--APDEGDF 44 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--cCCCCCE
Confidence 47899999999999999999973 4445543
No 469
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.53 E-value=0.15 Score=51.83 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..|||||||++.|+|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999973
No 470
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=91.50 E-value=0.16 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++|+|..|||||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 471
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=91.49 E-value=0.99 Score=49.00 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.|-.+|-|-=|||||||||.|+...
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~ 25 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANR 25 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhcc
Confidence 4777888888999999999999764
No 472
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=91.48 E-value=0.14 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999999973
No 473
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.47 E-value=0.18 Score=50.67 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDI 79 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~ 79 (710)
.++|+|..|+|||||++.|+|.. |...|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~ 64 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL--EAEEGK 64 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhccc--CCCCCe
Confidence 58999999999999999999973 444553
No 474
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=91.44 E-value=0.18 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|+|..|+|||||++.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999999996
No 475
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.43 E-value=0.19 Score=52.02 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
.++|+|..|||||||++.|+|.- +-..|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G 58 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI--DPTEG 58 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58999999999999999999973 43444
No 476
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=91.43 E-value=0.15 Score=50.48 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
-|+++|..|||||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 38999999999999999998863
No 477
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=91.42 E-value=3.5 Score=41.32 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++|+|..++||||||..|.+..
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHH
Confidence 69999999999999999999543
No 478
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=91.42 E-value=0.18 Score=51.50 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
-++++|..||||||+|++|+|.- |..+|
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~--~~~~G 58 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLV--RPRSG 58 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCe
Confidence 38999999999999999999973 44343
No 479
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.40 E-value=0.16 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|+|..|||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999996
No 480
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.37 E-value=0.15 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++++|..|||||||++.|.|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999996
No 481
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.35 E-value=0.17 Score=51.13 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++++|..|||||||++.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999996
No 482
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.32 E-value=0.2 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..|+|||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 483
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.32 E-value=0.16 Score=52.14 Aligned_cols=22 Identities=50% Similarity=0.677 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|+|..|||||||++.|.|.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999997
No 484
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=91.30 E-value=0.18 Score=51.28 Aligned_cols=23 Identities=57% Similarity=0.729 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++|+|..|||||||++.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 485
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.29 E-value=0.19 Score=50.91 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
.++|+|..|+|||||++.|.|.. |...|
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G 66 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL--HVESG 66 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCe
Confidence 58899999999999999999973 44455
No 486
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=91.28 E-value=0.16 Score=51.23 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
.++++|..|||||||++.|+|.- |...|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 55 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE--EPDSG 55 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 58999999999999999999973 44444
No 487
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=91.27 E-value=0.17 Score=45.87 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+|+|.++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999865
No 488
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.25 E-value=0.18 Score=52.93 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCcc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~ 80 (710)
.++|+|..|||||||++.|+|.. +-..|.+
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~--~p~~G~I 57 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKL--KPNLGKF 57 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCCceE
Confidence 69999999999999999999973 4445533
No 489
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.23 E-value=0.2 Score=50.61 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+|+|.+|||||||+++|...
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhc
Confidence 3778899999999999999854
No 490
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.23 E-value=0.18 Score=49.57 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++++|+.|+|||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999996
No 491
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=91.22 E-value=0.2 Score=52.74 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
.++|+|..|+|||||++.|+|.- |-.+|
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~--~p~~G 68 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMI--EPTSG 68 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCC
Confidence 58999999999999999999973 44444
No 492
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=91.17 E-value=0.19 Score=50.25 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++|+|..|+|||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 493
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=91.16 E-value=0.2 Score=50.89 Aligned_cols=28 Identities=36% Similarity=0.529 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
.++|+|..|+|||||++.|.|.. |...|
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G 59 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLY--KPTSG 59 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCC
Confidence 48999999999999999999974 44444
No 494
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.16 E-value=0.2 Score=51.34 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|++||..+|||||||.+|.|.
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 4999999999999999999994
No 495
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.14 E-value=0.17 Score=52.18 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..|||||||++.|+|.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 48999999999999999999963
No 496
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.13 E-value=0.17 Score=50.94 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
.++|+|..|||||||++.|.|.. |..+|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G 55 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI--KPDSG 55 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc--CCCce
Confidence 48999999999999999999973 43444
No 497
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.11 E-value=0.19 Score=51.49 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++|+|..|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 48999999999999999999984
No 498
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=91.09 E-value=0.34 Score=49.37 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=44.0
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc------chHHHHHHHhhCCCCCcEEEee
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA------NSDALQIAGIADPDGYRTIGII 222 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~------~~~~l~la~~~dp~g~rtI~Vl 222 (710)
-|.+||--| |..-++......-..-.++.. ++++|.++..+-- .+.+++...+..|. -+++..+
T Consensus 54 ~LnlwDcGg--------qe~fmen~~~~q~d~iF~nV~-vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~-AkiF~l~ 123 (295)
T KOG3886|consen 54 VLNLWDCGG--------QEEFMENYLSSQEDNIFRNVQ-VLIYVFDVESREMEKDFHYYQKCLEALLQNSPE-AKIFCLL 123 (295)
T ss_pred eeehhccCC--------cHHHHHHHHhhcchhhheehe-eeeeeeeccchhhhhhHHHHHHHHHHHHhcCCc-ceEEEEE
Confidence 377899877 323333333322223334454 5666777765422 23345556666664 6788899
Q ss_pred ccccccCcccc
Q 005171 223 TKLDIMDRGTD 233 (710)
Q Consensus 223 TK~Dl~~~~~~ 233 (710)
+|.|++..+.+
T Consensus 124 hKmDLv~~d~r 134 (295)
T KOG3886|consen 124 HKMDLVQEDAR 134 (295)
T ss_pred eechhcccchH
Confidence 99999976654
No 499
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.08 E-value=0.2 Score=53.30 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
.++|+|..|||||||++.|+|.- |...|
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~--~p~~G 62 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALL--KPSSG 62 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 48999999999999999999963 44455
No 500
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.05 E-value=0.19 Score=49.21 Aligned_cols=23 Identities=17% Similarity=0.481 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++|+|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
Done!