Query 005171
Match_columns 710
No_of_seqs 467 out of 2861
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 17:32:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 1E-114 4E-119 1010.8 47.8 669 21-709 25-740 (772)
2 3szr_A Interferon-induced GTP- 100.0 1.7E-83 5.8E-88 744.3 44.2 552 17-709 16-581 (608)
3 3t34_A Dynamin-related protein 100.0 5.7E-49 2E-53 428.5 29.4 319 22-340 1-328 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 2.4E-47 8.4E-52 414.7 34.6 337 21-359 5-344 (353)
5 1jwy_B Dynamin A GTPase domain 100.0 2.1E-39 7.3E-44 345.3 28.2 309 23-332 1-315 (315)
6 2aka_B Dynamin-1; fusion prote 100.0 3.9E-37 1.3E-41 325.0 32.2 299 22-322 1-299 (299)
7 3ljb_A Interferon-induced GTP- 100.0 1.8E-37 6.1E-42 320.4 16.5 258 340-710 4-271 (271)
8 2j69_A Bacterial dynamin-like 99.8 4.6E-18 1.6E-22 199.6 22.4 190 23-231 49-246 (695)
9 4dhe_A Probable GTP-binding pr 99.5 4.7E-13 1.6E-17 133.9 15.2 129 45-230 27-159 (223)
10 3pqc_A Probable GTP-binding pr 99.4 1.6E-12 5.5E-17 126.5 16.7 125 45-230 21-148 (195)
11 1wf3_A GTP-binding protein; GT 99.4 6.7E-13 2.3E-17 140.6 13.4 125 46-231 6-133 (301)
12 3iev_A GTP-binding protein ERA 99.4 2.7E-12 9.3E-17 136.3 17.6 125 47-229 10-136 (308)
13 1svi_A GTP-binding protein YSX 99.4 3E-12 1E-16 125.0 16.1 124 45-230 21-149 (195)
14 3t5d_A Septin-7; GTP-binding p 99.4 4.8E-12 1.7E-16 131.9 15.8 136 48-230 9-159 (274)
15 2qpt_A EH domain-containing pr 99.4 1.5E-12 5.2E-17 148.7 12.5 165 46-231 64-234 (550)
16 3lxx_A GTPase IMAP family memb 99.3 5.1E-12 1.8E-16 128.6 11.8 128 45-230 27-160 (239)
17 4dcu_A GTP-binding protein ENG 99.3 1.7E-11 5.7E-16 137.2 17.0 203 19-308 166-372 (456)
18 2xtp_A GTPase IMAP family memb 99.3 4.5E-11 1.5E-15 123.1 16.8 127 45-229 20-153 (260)
19 2hjg_A GTP-binding protein ENG 99.3 2.1E-11 7.1E-16 135.7 14.8 203 17-306 144-350 (436)
20 1mky_A Probable GTP-binding pr 99.3 1.3E-11 4.5E-16 137.3 13.0 123 47-228 1-123 (439)
21 1ky3_A GTP-binding protein YPT 99.3 2.1E-11 7.1E-16 117.0 12.5 119 46-229 7-132 (182)
22 2dyk_A GTP-binding protein; GT 99.3 1.6E-11 5.6E-16 115.5 11.1 122 47-230 1-123 (161)
23 3q72_A GTP-binding protein RAD 99.3 2.9E-11 9.8E-16 114.5 12.8 116 47-230 2-121 (166)
24 2qu8_A Putative nucleolar GTP- 99.3 1.2E-10 4.2E-15 117.3 18.2 126 46-230 28-157 (228)
25 2il1_A RAB12; G-protein, GDP, 99.3 2.5E-11 8.4E-16 118.9 12.1 117 47-229 26-145 (192)
26 2cxx_A Probable GTP-binding pr 99.3 1.1E-10 3.6E-15 113.1 16.5 123 47-230 1-137 (190)
27 2g6b_A RAS-related protein RAB 99.2 4.6E-11 1.6E-15 114.7 13.2 119 47-230 10-131 (180)
28 1zbd_A Rabphilin-3A; G protein 99.2 5.8E-11 2E-15 116.8 14.2 166 47-311 8-177 (203)
29 3iby_A Ferrous iron transport 99.2 2.8E-11 9.5E-16 125.1 11.8 122 47-230 1-125 (256)
30 3tw8_B RAS-related protein RAB 99.2 1.6E-11 5.4E-16 117.7 9.2 28 46-73 8-35 (181)
31 2f7s_A C25KG, RAS-related prot 99.2 8.8E-11 3E-15 116.9 14.9 68 148-229 84-155 (217)
32 4bas_A ADP-ribosylation factor 99.2 4E-11 1.4E-15 117.2 11.9 117 45-230 15-142 (199)
33 4dcu_A GTP-binding protein ENG 99.2 1.1E-11 3.9E-16 138.6 8.9 126 44-230 20-146 (456)
34 3bc1_A RAS-related protein RAB 99.2 1.3E-10 4.3E-15 112.6 15.2 68 148-229 70-141 (195)
35 1ega_A Protein (GTP-binding pr 99.2 7.6E-12 2.6E-16 132.4 6.9 123 45-229 6-130 (301)
36 3clv_A RAB5 protein, putative; 99.2 4.8E-11 1.6E-15 116.3 12.1 28 46-73 6-33 (208)
37 3lxw_A GTPase IMAP family memb 99.2 2.6E-11 9E-16 124.5 10.7 126 47-229 21-153 (247)
38 1g16_A RAS-related protein SEC 99.2 3.7E-11 1.2E-15 113.9 10.8 115 48-228 4-121 (170)
39 2fn4_A P23, RAS-related protei 99.2 4.1E-11 1.4E-15 114.8 11.2 117 46-229 8-128 (181)
40 1u8z_A RAS-related protein RAL 99.2 9.1E-11 3.1E-15 110.6 13.4 117 47-230 4-124 (168)
41 2bme_A RAB4A, RAS-related prot 99.2 9.9E-11 3.4E-15 113.1 13.6 117 47-229 10-129 (186)
42 1c1y_A RAS-related protein RAP 99.2 8.6E-11 2.9E-15 111.0 12.9 115 48-229 4-122 (167)
43 1wms_A RAB-9, RAB9, RAS-relate 99.2 8.5E-11 2.9E-15 112.4 12.9 117 47-229 7-130 (177)
44 2oil_A CATX-8, RAS-related pro 99.2 8E-11 2.7E-15 114.9 12.5 118 47-230 25-145 (193)
45 3con_A GTPase NRAS; structural 99.2 1.3E-10 4.3E-15 113.0 13.7 117 46-229 20-140 (190)
46 2lkc_A Translation initiation 99.2 2.8E-11 9.6E-16 116.0 8.8 117 45-230 6-122 (178)
47 3tkl_A RAS-related protein RAB 99.2 1.4E-10 4.8E-15 113.0 13.9 118 47-230 16-136 (196)
48 2hjg_A GTP-binding protein ENG 99.2 3.6E-11 1.2E-15 133.7 10.8 123 47-230 3-126 (436)
49 3cph_A RAS-related protein SEC 99.2 1.3E-10 4.3E-15 115.0 13.5 117 46-228 19-138 (213)
50 2nzj_A GTP-binding protein REM 99.2 1.5E-10 5.1E-15 110.3 13.5 119 47-230 4-126 (175)
51 2a9k_A RAS-related protein RAL 99.2 2E-10 6.8E-15 110.6 14.3 119 45-230 16-138 (187)
52 2ged_A SR-beta, signal recogni 99.2 5.8E-11 2E-15 115.7 10.4 54 19-72 20-73 (193)
53 2o52_A RAS-related protein RAB 99.2 1.3E-10 4.3E-15 114.7 12.9 117 47-229 25-144 (200)
54 3gee_A MNME, tRNA modification 99.2 1.1E-10 3.7E-15 131.0 13.8 121 48-230 234-358 (476)
55 4dsu_A GTPase KRAS, isoform 2B 99.2 2.3E-10 7.8E-15 110.5 14.3 116 48-230 5-124 (189)
56 2yc2_C IFT27, small RAB-relate 99.2 5.8E-11 2E-15 116.7 10.2 68 148-229 73-146 (208)
57 1z2a_A RAS-related protein RAB 99.2 4.7E-11 1.6E-15 112.9 8.9 26 47-72 5-30 (168)
58 3dz8_A RAS-related protein RAB 99.2 5.7E-11 2E-15 115.9 9.8 117 47-229 23-142 (191)
59 1z0f_A RAB14, member RAS oncog 99.2 6E-11 2E-15 113.4 9.4 118 46-229 14-134 (179)
60 1kao_A RAP2A; GTP-binding prot 99.2 8.7E-11 3E-15 110.6 10.4 115 48-229 4-122 (167)
61 2a5j_A RAS-related protein RAB 99.2 1.2E-10 4.1E-15 113.7 11.6 117 47-229 21-140 (191)
62 1vg8_A RAS-related protein RAB 99.2 8E-11 2.7E-15 115.9 10.3 28 46-73 7-34 (207)
63 2bov_A RAla, RAS-related prote 99.2 3.2E-10 1.1E-14 111.3 14.6 120 44-230 11-134 (206)
64 2gf9_A RAS-related protein RAB 99.2 8.1E-11 2.8E-15 114.6 9.9 118 47-230 22-142 (189)
65 2ce2_X GTPase HRAS; signaling 99.2 9.9E-11 3.4E-15 110.0 10.1 115 48-229 4-122 (166)
66 1mky_A Probable GTP-binding pr 99.1 2.7E-10 9.4E-15 126.7 15.1 205 17-306 145-356 (439)
67 1h65_A Chloroplast outer envel 99.1 1.9E-10 6.4E-15 119.5 12.7 126 45-231 37-170 (270)
68 3geh_A MNME, tRNA modification 99.1 6.2E-11 2.1E-15 132.5 9.7 121 48-231 225-346 (462)
69 2ew1_A RAS-related protein RAB 99.1 2.6E-10 8.8E-15 113.1 13.1 117 47-229 26-145 (201)
70 1ek0_A Protein (GTP-binding pr 99.1 7.8E-11 2.7E-15 111.4 8.9 117 48-230 4-123 (170)
71 1z0j_A RAB-22, RAS-related pro 99.1 7.8E-11 2.7E-15 111.6 8.9 118 47-230 6-126 (170)
72 1z08_A RAS-related protein RAB 99.1 6.2E-11 2.1E-15 112.5 8.1 118 47-230 6-126 (170)
73 1z06_A RAS-related protein RAB 99.1 1.2E-10 4.2E-15 113.3 10.2 119 46-230 19-142 (189)
74 2y8e_A RAB-protein 6, GH09086P 99.1 6.9E-11 2.3E-15 113.0 8.2 118 47-230 14-134 (179)
75 1x3s_A RAS-related protein RAB 99.1 1.6E-10 5.6E-15 112.2 11.0 117 47-229 15-135 (195)
76 3k53_A Ferrous iron transport 99.1 1.4E-10 4.8E-15 120.5 11.1 118 46-229 2-123 (271)
77 1xzp_A Probable tRNA modificat 99.1 8E-11 2.7E-15 132.2 9.9 119 48-229 244-364 (482)
78 2iwr_A Centaurin gamma 1; ANK 99.1 3.9E-10 1.3E-14 108.2 13.4 28 46-73 6-33 (178)
79 1r8s_A ADP-ribosylation factor 99.1 3.4E-10 1.2E-14 106.8 12.7 69 148-230 44-116 (164)
80 2bcg_Y Protein YP2, GTP-bindin 99.1 2.1E-10 7.2E-15 113.2 11.4 118 47-230 8-128 (206)
81 2erx_A GTP-binding protein DI- 99.1 8.3E-11 2.9E-15 111.5 8.2 68 149-230 52-124 (172)
82 3kkq_A RAS-related protein M-R 99.1 2.8E-10 9.7E-15 109.7 12.0 118 45-229 16-137 (183)
83 2qtf_A Protein HFLX, GTP-bindi 99.1 8.9E-10 3.1E-14 119.6 17.2 126 46-231 178-308 (364)
84 2efe_B Small GTP-binding prote 99.1 8.6E-11 3E-15 112.8 8.2 119 46-230 11-132 (181)
85 2hup_A RAS-related protein RAB 99.1 4.7E-10 1.6E-14 110.8 13.5 117 47-229 29-148 (201)
86 1zd9_A ADP-ribosylation factor 99.1 9.9E-10 3.4E-14 106.9 15.0 114 47-230 22-139 (188)
87 2wjg_A FEOB, ferrous iron tran 99.1 1.4E-10 4.9E-15 112.3 8.7 120 45-229 5-126 (188)
88 2fg5_A RAB-22B, RAS-related pr 99.1 2.3E-10 8E-15 111.8 10.3 117 47-229 23-142 (192)
89 2fu5_C RAS-related protein RAB 99.1 1.1E-10 3.6E-15 112.7 7.6 69 148-230 57-128 (183)
90 2q3h_A RAS homolog gene family 99.1 2.2E-10 7.4E-15 112.5 10.0 117 46-230 19-139 (201)
91 3q85_A GTP-binding protein REM 99.1 2.6E-10 9E-15 108.1 10.1 26 47-72 2-27 (169)
92 2gco_A H9, RHO-related GTP-bin 99.1 1.7E-10 5.7E-15 113.8 8.8 116 48-231 26-145 (201)
93 1mh1_A RAC1; GTP-binding, GTPa 99.1 2.4E-10 8.4E-15 110.0 9.7 117 47-231 5-125 (186)
94 2atx_A Small GTP binding prote 99.1 4E-10 1.4E-14 109.9 11.4 116 48-231 19-138 (194)
95 3oes_A GTPase rhebl1; small GT 99.1 7.1E-11 2.4E-15 116.4 6.0 118 46-230 23-144 (201)
96 2gj8_A MNME, tRNA modification 99.1 8.6E-10 2.9E-14 106.2 13.5 122 48-229 5-129 (172)
97 1upt_A ARL1, ADP-ribosylation 99.1 3.4E-10 1.2E-14 107.4 10.5 113 47-230 7-123 (171)
98 2j1l_A RHO-related GTP-binding 99.1 5.2E-10 1.8E-14 111.6 12.2 117 47-231 34-154 (214)
99 3t1o_A Gliding protein MGLA; G 99.1 1.3E-09 4.3E-14 105.9 14.6 69 148-230 74-150 (198)
100 3reg_A RHO-like small GTPase; 99.1 2.3E-10 7.8E-15 111.8 9.3 117 46-230 22-142 (194)
101 3a1s_A Iron(II) transport prot 99.1 5.1E-10 1.7E-14 115.7 12.4 117 47-229 5-124 (258)
102 3i8s_A Ferrous iron transport 99.1 2.4E-10 8.3E-15 119.1 10.1 121 47-229 3-126 (274)
103 2p5s_A RAS and EF-hand domain 99.1 3.7E-10 1.2E-14 111.1 10.7 118 46-229 27-147 (199)
104 2e87_A Hypothetical protein PH 99.1 2.6E-09 9E-14 115.5 18.4 125 45-230 165-295 (357)
105 2fv8_A H6, RHO-related GTP-bin 99.1 2.1E-10 7.3E-15 113.6 9.1 115 48-230 26-144 (207)
106 2fh5_B SR-beta, signal recogni 99.1 5.2E-10 1.8E-14 111.0 11.6 118 46-231 6-131 (214)
107 2wji_A Ferrous iron transport 99.1 5.8E-10 2E-14 106.4 11.5 116 48-229 4-122 (165)
108 2h57_A ADP-ribosylation factor 99.1 1.7E-10 6E-15 112.3 8.0 115 47-230 21-141 (190)
109 1zj6_A ADP-ribosylation factor 99.1 5.6E-10 1.9E-14 108.3 11.6 114 46-230 15-132 (187)
110 4gzl_A RAS-related C3 botulinu 99.1 2.1E-10 7.1E-15 113.6 8.4 119 46-232 29-151 (204)
111 1r2q_A RAS-related protein RAB 99.1 3.6E-10 1.2E-14 106.9 9.5 68 148-229 55-125 (170)
112 4djt_A GTP-binding nuclear pro 99.1 1.2E-10 4E-15 116.1 6.1 68 149-230 62-132 (218)
113 2hxs_A RAB-26, RAS-related pro 99.0 1.4E-10 4.8E-15 111.0 6.3 27 46-72 5-31 (178)
114 3def_A T7I23.11 protein; chlor 99.0 9E-10 3.1E-14 113.9 12.7 124 46-230 35-166 (262)
115 2atv_A RERG, RAS-like estrogen 99.0 1.1E-09 3.8E-14 107.2 12.6 116 46-229 27-146 (196)
116 3t5g_A GTP-binding protein RHE 99.0 1.9E-10 6.5E-15 110.7 6.9 117 47-230 6-126 (181)
117 1moz_A ARL1, ADP-ribosylation 99.0 5.1E-10 1.7E-14 107.7 9.9 114 46-230 17-134 (183)
118 1lnz_A SPO0B-associated GTP-bi 99.0 2.2E-10 7.5E-15 123.3 7.8 25 47-71 158-182 (342)
119 1ksh_A ARF-like protein 2; sma 99.0 6.4E-10 2.2E-14 107.6 10.2 114 46-230 17-134 (186)
120 3b1v_A Ferrous iron uptake tra 99.0 9.9E-10 3.4E-14 114.5 12.3 116 47-229 3-121 (272)
121 3cpj_B GTP-binding protein YPT 99.0 4.1E-10 1.4E-14 113.0 8.9 117 47-229 13-132 (223)
122 2b6h_A ADP-ribosylation factor 99.0 7.2E-10 2.5E-14 108.6 10.3 114 46-230 28-145 (192)
123 2h17_A ADP-ribosylation factor 99.0 5.1E-10 1.8E-14 108.2 8.5 113 47-230 21-137 (181)
124 2gf0_A GTP-binding protein DI- 99.0 4.5E-10 1.5E-14 109.6 8.1 27 46-72 7-33 (199)
125 3ihw_A Centg3; RAS, centaurin, 99.0 2.1E-09 7.2E-14 104.6 12.5 27 46-72 19-45 (184)
126 3bwd_D RAC-like GTP-binding pr 99.0 2.4E-10 8.2E-15 109.8 5.2 117 46-230 7-127 (182)
127 2j0v_A RAC-like GTP-binding pr 99.0 4.5E-10 1.6E-14 111.3 7.3 117 46-230 8-128 (212)
128 4dkx_A RAS-related protein RAB 99.0 1.5E-09 5E-14 109.3 10.4 69 148-229 62-132 (216)
129 1f6b_A SAR1; gtpases, N-termin 99.0 9.8E-10 3.4E-14 108.3 8.7 114 45-229 23-140 (198)
130 3llu_A RAS-related GTP-binding 99.0 2.8E-09 9.4E-14 104.6 11.9 119 46-230 19-144 (196)
131 3c5c_A RAS-like protein 12; GD 99.0 7.3E-10 2.5E-14 108.0 7.7 26 47-72 21-46 (187)
132 3q3j_B RHO-related GTP-binding 99.0 7.9E-10 2.7E-14 110.4 8.1 117 46-230 26-146 (214)
133 1gwn_A RHO-related GTP-binding 99.0 1.8E-09 6.1E-14 107.3 10.2 116 47-230 28-147 (205)
134 1m7b_A RND3/RHOE small GTP-bin 99.0 1.1E-09 3.7E-14 106.1 8.5 116 47-230 7-126 (184)
135 1fzq_A ADP-ribosylation factor 98.9 2.7E-09 9.1E-14 103.4 10.9 115 45-230 14-132 (181)
136 3cbq_A GTP-binding protein REM 98.9 2.9E-09 1E-13 104.7 11.0 26 46-71 22-47 (195)
137 1nrj_B SR-beta, signal recogni 98.9 2.4E-09 8E-14 106.6 10.4 28 45-72 10-37 (218)
138 3qq5_A Small GTP-binding prote 98.9 8E-10 2.7E-14 122.1 7.6 123 46-231 33-156 (423)
139 2x77_A ADP-ribosylation factor 98.9 8.9E-10 3E-14 107.0 7.1 114 46-230 21-138 (189)
140 4a9a_A Ribosome-interacting GT 98.9 1E-09 3.6E-14 119.1 8.2 122 46-228 71-195 (376)
141 3dpu_A RAB family protein; roc 98.9 5.1E-09 1.8E-13 119.3 14.2 128 44-230 38-165 (535)
142 3o47_A ADP-ribosylation factor 98.9 2.6E-09 8.9E-14 114.3 10.8 111 49-230 167-281 (329)
143 1m2o_B GTP-binding protein SAR 98.9 2E-09 6.9E-14 105.2 8.9 113 46-229 22-138 (190)
144 3l0i_B RAS-related protein RAB 98.9 5.2E-11 1.8E-15 117.2 -4.3 118 47-230 33-153 (199)
145 3lvq_E ARF-GAP with SH3 domain 98.9 5.2E-09 1.8E-13 118.0 11.4 113 47-230 322-438 (497)
146 3th5_A RAS-related C3 botulinu 98.4 3.1E-10 1.1E-14 111.9 0.0 68 149-230 79-149 (204)
147 3gj0_A GTP-binding nuclear pro 98.8 8.6E-10 3E-14 110.2 3.1 68 148-230 64-134 (221)
148 3sjy_A Translation initiation 98.8 1.4E-08 4.9E-13 111.6 12.9 67 148-230 75-144 (403)
149 2wkq_A NPH1-1, RAS-related C3 98.8 1.2E-08 4E-13 108.0 11.8 118 46-231 154-275 (332)
150 2g3y_A GTP-binding protein GEM 98.8 6.5E-08 2.2E-12 96.8 15.2 26 46-71 36-61 (211)
151 3p26_A Elongation factor 1 alp 98.8 3.3E-08 1.1E-12 111.2 14.4 146 46-230 32-186 (483)
152 3r7w_A Gtpase1, GTP-binding pr 98.8 1.4E-08 4.8E-13 107.5 10.7 73 148-229 52-129 (307)
153 1wb1_A Translation elongation 98.8 2E-08 6.9E-13 112.9 12.6 65 148-229 73-139 (482)
154 2qag_A Septin-2, protein NEDD5 98.8 1.1E-08 3.9E-13 110.8 9.9 81 148-230 95-189 (361)
155 3tr5_A RF-3, peptide chain rel 98.8 5E-09 1.7E-13 119.0 6.7 68 148-230 82-149 (528)
156 3cb4_D GTP-binding protein LEP 98.7 2.7E-08 9.2E-13 114.4 11.1 133 47-230 4-138 (599)
157 3j2k_7 ERF3, eukaryotic polype 98.7 2.7E-08 9.2E-13 110.6 10.6 148 46-230 16-170 (439)
158 2ywe_A GTP-binding protein LEP 98.7 4.4E-08 1.5E-12 112.5 12.5 133 47-230 6-140 (600)
159 2qag_B Septin-6, protein NEDD5 98.7 2.3E-08 7.9E-13 110.0 9.7 83 148-232 95-193 (427)
160 3izq_1 HBS1P, elongation facto 98.7 5.6E-08 1.9E-12 112.3 13.0 146 46-229 166-319 (611)
161 3izy_P Translation initiation 98.7 2E-09 6.9E-14 122.1 0.8 117 46-230 3-119 (537)
162 1wxq_A GTP-binding protein; st 98.7 9.4E-09 3.2E-13 112.8 6.1 36 49-85 2-38 (397)
163 2f9l_A RAB11B, member RAS onco 98.7 7.3E-08 2.5E-12 94.5 11.8 26 47-72 5-30 (199)
164 1kk1_A EIF2gamma; initiation o 98.7 1.7E-07 5.7E-12 103.2 14.6 67 148-230 83-152 (410)
165 2zej_A Dardarin, leucine-rich 98.7 1.9E-08 6.6E-13 97.4 6.2 23 48-70 3-25 (184)
166 2qag_C Septin-7; cell cycle, c 98.7 1.1E-07 3.7E-12 104.9 12.8 81 148-230 88-182 (418)
167 1pui_A ENGB, probable GTP-bind 98.6 6.5E-08 2.2E-12 95.3 9.5 78 149-231 73-153 (210)
168 2h5e_A Peptide chain release f 98.6 5.8E-08 2E-12 110.3 10.1 69 148-231 82-150 (529)
169 2cjw_A GTP-binding protein GEM 98.6 1.6E-07 5.4E-12 91.9 11.8 24 47-70 6-29 (192)
170 1s0u_A EIF-2-gamma, translatio 98.6 1.9E-07 6.5E-12 102.8 13.3 67 148-230 81-150 (408)
171 2c78_A Elongation factor TU-A; 98.6 7.3E-08 2.5E-12 105.9 9.6 67 148-229 75-142 (405)
172 2elf_A Protein translation elo 98.6 2.1E-07 7.1E-12 101.2 12.6 61 149-227 61-125 (370)
173 3ec1_A YQEH GTPase; atnos1, at 98.6 1.4E-08 4.9E-13 110.3 2.6 43 19-70 143-185 (369)
174 1g7s_A Translation initiation 98.6 1.6E-08 5.3E-13 116.4 2.9 66 149-229 71-136 (594)
175 1zun_B Sulfate adenylate trans 98.6 1.1E-07 3.7E-12 105.6 9.1 67 148-230 104-172 (434)
176 2xex_A Elongation factor G; GT 98.5 4.4E-08 1.5E-12 114.9 6.0 68 148-230 75-142 (693)
177 1d2e_A Elongation factor TU (E 98.5 2E-07 7E-12 102.1 10.4 65 148-229 66-133 (397)
178 1zo1_I IF2, translation initia 98.5 1E-08 3.5E-13 115.3 -0.1 65 149-230 52-118 (501)
179 3sop_A Neuronal-specific septi 98.5 1.9E-07 6.4E-12 97.1 9.4 83 148-232 60-157 (270)
180 3p32_A Probable GTPase RV1496/ 98.5 6.3E-07 2.2E-11 96.7 13.9 25 46-70 78-102 (355)
181 1f60_A Elongation factor EEF1A 98.5 2E-07 6.9E-12 104.1 10.3 143 46-229 6-159 (458)
182 2rdo_7 EF-G, elongation factor 98.5 3.7E-07 1.3E-11 107.2 12.8 68 148-230 82-149 (704)
183 2www_A Methylmalonic aciduria 98.5 5.7E-07 2E-11 96.9 11.9 26 45-70 72-97 (349)
184 2qnr_A Septin-2, protein NEDD5 98.5 7.2E-07 2.5E-11 94.1 12.1 81 148-230 76-170 (301)
185 1dar_A EF-G, elongation factor 98.4 1.8E-07 6.2E-12 109.6 7.6 69 148-231 77-145 (691)
186 3h2y_A GTPase family protein; 98.4 7.2E-08 2.5E-12 104.7 3.7 44 19-71 141-184 (368)
187 1oix_A RAS-related protein RAB 98.4 2.9E-07 1E-11 89.8 7.3 26 47-72 29-54 (191)
188 1jny_A EF-1-alpha, elongation 98.4 3.7E-07 1.3E-11 101.3 8.6 67 148-230 84-159 (435)
189 1n0u_A EF-2, elongation factor 98.4 2.4E-07 8.1E-12 111.0 7.0 66 148-228 98-163 (842)
190 1udx_A The GTP-binding protein 98.3 1.6E-06 5.3E-11 95.5 10.6 25 47-71 157-181 (416)
191 3avx_A Elongation factor TS, e 98.3 1.2E-06 4.1E-11 106.0 10.4 65 148-229 359-426 (1289)
192 3c5h_A Glucocorticoid receptor 98.3 3.2E-07 1.1E-11 94.2 4.2 25 46-70 18-51 (255)
193 2dy1_A Elongation factor G; tr 98.3 2E-06 6.9E-11 100.4 11.3 132 46-228 8-139 (665)
194 1jal_A YCHF protein; nucleotid 98.3 6.4E-07 2.2E-11 96.7 6.0 37 48-84 3-39 (363)
195 1r5b_A Eukaryotic peptide chai 98.3 8.6E-07 2.9E-11 99.3 7.3 65 148-229 121-195 (467)
196 3mca_A HBS1, elongation factor 98.3 2.9E-08 1E-12 114.3 -5.1 24 47-70 177-200 (592)
197 1yrb_A ATP(GTP)binding protein 98.2 1.4E-05 4.8E-10 81.5 14.3 29 45-73 12-45 (262)
198 3vqt_A RF-3, peptide chain rel 98.2 2.6E-06 8.7E-11 97.2 9.0 134 48-230 32-167 (548)
199 3r7w_B Gtpase2, GTP-binding pr 98.2 2.8E-06 9.7E-11 90.3 8.4 71 148-230 46-121 (331)
200 2ohf_A Protein OLA1, GTP-bindi 98.1 1.8E-06 6.2E-11 94.1 6.3 37 47-84 22-59 (396)
201 3dm5_A SRP54, signal recogniti 98.1 4.1E-05 1.4E-09 84.6 17.1 81 148-239 183-263 (443)
202 2j37_W Signal recognition part 98.1 1.3E-05 4.6E-10 90.1 13.3 77 148-236 184-261 (504)
203 1puj_A YLQF, conserved hypothe 98.1 6.2E-06 2.1E-10 86.1 9.6 31 47-77 120-150 (282)
204 2p67_A LAO/AO transport system 98.1 4.5E-06 1.5E-10 89.5 7.9 25 46-70 55-79 (341)
205 2qm8_A GTPase/ATPase; G protei 98.1 0.00012 4.1E-09 78.3 18.6 25 46-70 54-78 (337)
206 1tq4_A IIGP1, interferon-induc 98.0 1.2E-05 4.2E-10 88.3 10.2 70 147-228 119-188 (413)
207 2dby_A GTP-binding protein; GD 98.0 4.9E-06 1.7E-10 90.2 6.6 37 48-84 2-38 (368)
208 3j25_A Tetracycline resistance 98.0 2.4E-06 8.4E-11 99.2 4.1 133 48-231 3-135 (638)
209 2wsm_A Hydrogenase expression/ 98.0 1.3E-05 4.4E-10 79.5 8.1 25 46-70 29-53 (221)
210 4fn5_A EF-G 1, elongation fact 98.0 5.2E-06 1.8E-10 97.6 6.1 136 47-230 13-152 (709)
211 1f5n_A Interferon-induced guan 97.9 1.3E-05 4.5E-10 91.7 8.2 28 45-72 36-63 (592)
212 1ni3_A YCHF GTPase, YCHF GTP-b 97.8 1.8E-05 6E-10 86.4 6.8 38 47-84 20-58 (392)
213 3cnl_A YLQF, putative uncharac 97.8 1.2E-05 4.3E-10 82.9 4.1 27 48-74 100-126 (262)
214 2v3c_C SRP54, signal recogniti 97.7 3.4E-05 1.2E-09 85.3 6.7 78 148-237 181-260 (432)
215 3kl4_A SRP54, signal recogniti 97.6 0.00011 3.7E-09 81.2 9.4 82 148-238 180-261 (433)
216 2hf9_A Probable hydrogenase ni 97.6 0.00015 5.3E-09 71.9 9.6 26 46-71 37-62 (226)
217 2yhs_A FTSY, cell division pro 97.6 0.00012 4.1E-09 81.8 9.0 95 148-253 376-474 (503)
218 2px0_A Flagellar biosynthesis 97.6 0.00055 1.9E-08 71.8 13.1 97 148-259 183-281 (296)
219 2xxa_A Signal recognition part 97.5 0.00052 1.8E-08 75.8 11.8 78 148-236 184-261 (433)
220 1j8m_F SRP54, signal recogniti 97.3 0.00052 1.8E-08 72.0 9.6 82 148-238 181-262 (297)
221 1vma_A Cell division protein F 97.3 0.00018 6.1E-09 75.9 5.7 97 148-255 187-287 (306)
222 1rj9_A FTSY, signal recognitio 97.3 0.00063 2.2E-08 71.6 9.4 100 149-255 186-285 (304)
223 3q5d_A Atlastin-1; G protein, 97.2 0.00074 2.5E-08 74.7 9.5 25 46-70 66-90 (447)
224 3e70_C DPA, signal recognition 97.2 0.0013 4.4E-08 70.0 10.2 79 149-238 213-291 (328)
225 1zu4_A FTSY; GTPase, signal re 97.1 0.0074 2.5E-07 63.9 15.9 97 148-255 192-292 (320)
226 2ffh_A Protein (FFH); SRP54, s 97.0 0.0013 4.3E-08 72.5 8.8 79 148-237 181-259 (425)
227 2og2_A Putative signal recogni 96.6 0.0085 2.9E-07 64.4 11.4 85 149-238 242-326 (359)
228 3b9q_A Chloroplast SRP recepto 96.5 0.0088 3E-07 62.8 10.2 85 149-238 185-269 (302)
229 1ls1_A Signal recognition part 96.5 0.01 3.6E-07 61.9 10.4 95 148-255 181-275 (295)
230 1t9h_A YLOQ, probable GTPase E 95.5 0.0061 2.1E-07 64.1 3.1 24 48-71 174-197 (307)
231 4ido_A Atlastin-1; GTPase, GTP 95.3 0.066 2.3E-06 59.0 10.5 22 47-68 67-88 (457)
232 1puj_A YLQF, conserved hypothe 94.8 0.13 4.3E-06 53.3 10.8 54 173-230 12-65 (282)
233 3ney_A 55 kDa erythrocyte memb 94.0 0.022 7.4E-07 56.0 2.5 23 48-70 20-42 (197)
234 1lvg_A Guanylate kinase, GMP k 93.7 0.027 9.4E-07 54.9 2.6 22 49-70 6-27 (198)
235 1kgd_A CASK, peripheral plasma 93.6 0.028 9.7E-07 53.7 2.6 22 49-70 7-28 (180)
236 1ex7_A Guanylate kinase; subst 93.6 0.026 8.9E-07 54.9 2.3 35 50-84 4-40 (186)
237 2rcn_A Probable GTPase ENGC; Y 93.5 0.048 1.6E-06 58.5 4.4 23 49-71 217-239 (358)
238 1znw_A Guanylate kinase, GMP k 93.4 0.032 1.1E-06 54.6 2.5 22 49-70 22-43 (207)
239 1ye8_A Protein THEP1, hypothet 93.1 0.04 1.4E-06 52.9 2.8 22 49-70 2-23 (178)
240 1u0l_A Probable GTPase ENGC; p 93.1 0.054 1.8E-06 56.6 3.8 23 49-71 171-193 (301)
241 3tif_A Uncharacterized ABC tra 93.0 0.046 1.6E-06 55.0 3.1 23 49-71 33-55 (235)
242 4dzz_A Plasmid partitioning pr 93.0 0.3 1E-05 46.8 8.9 66 148-228 76-143 (206)
243 1s96_A Guanylate kinase, GMP k 92.9 0.041 1.4E-06 54.8 2.6 23 49-71 18-40 (219)
244 3tr0_A Guanylate kinase, GMP k 92.9 0.043 1.5E-06 53.0 2.6 22 49-70 9-30 (205)
245 2gza_A Type IV secretion syste 92.8 0.054 1.9E-06 58.1 3.5 28 49-78 177-204 (361)
246 4fid_A G protein alpha subunit 92.8 0.11 3.7E-06 55.3 5.7 69 148-229 161-242 (340)
247 3tau_A Guanylate kinase, GMP k 92.8 0.056 1.9E-06 53.0 3.2 22 49-70 10-31 (208)
248 2pcj_A ABC transporter, lipopr 92.7 0.051 1.7E-06 54.2 2.9 23 49-71 32-54 (224)
249 1z6g_A Guanylate kinase; struc 92.7 0.045 1.5E-06 54.2 2.5 22 49-70 25-46 (218)
250 1zp6_A Hypothetical protein AT 92.7 0.058 2E-06 51.5 3.2 22 49-70 11-32 (191)
251 3a00_A Guanylate kinase, GMP k 92.7 0.046 1.6E-06 52.5 2.5 21 50-70 4-24 (186)
252 1zcb_A G alpha I/13; GTP-bindi 92.5 0.049 1.7E-06 58.5 2.6 69 148-229 201-282 (362)
253 1sgw_A Putative ABC transporte 92.5 0.062 2.1E-06 53.3 3.2 22 49-70 37-58 (214)
254 3c8u_A Fructokinase; YP_612366 92.5 0.044 1.5E-06 53.6 2.0 22 49-70 24-45 (208)
255 2cbz_A Multidrug resistance-as 92.4 0.061 2.1E-06 54.2 3.1 23 49-71 33-55 (237)
256 3ohm_A Guanine nucleotide-bind 92.4 0.07 2.4E-06 56.5 3.7 69 148-229 167-248 (327)
257 2pt7_A CAG-ALFA; ATPase, prote 92.4 0.052 1.8E-06 57.6 2.6 27 50-78 174-200 (330)
258 2onk_A Molybdate/tungstate ABC 92.4 0.066 2.3E-06 54.1 3.3 24 48-71 25-48 (240)
259 1mv5_A LMRA, multidrug resista 92.4 0.064 2.2E-06 54.2 3.2 23 49-71 30-52 (243)
260 4g1u_C Hemin import ATP-bindin 92.3 0.064 2.2E-06 55.1 3.1 22 49-70 39-60 (266)
261 2oap_1 GSPE-2, type II secreti 92.3 0.06 2E-06 60.6 3.1 30 50-81 263-292 (511)
262 2pze_A Cystic fibrosis transme 92.3 0.067 2.3E-06 53.5 3.2 22 49-70 36-57 (229)
263 1np6_A Molybdopterin-guanine d 92.2 0.068 2.3E-06 51.3 3.0 25 46-70 5-29 (174)
264 1b0u_A Histidine permease; ABC 92.2 0.068 2.3E-06 54.7 3.2 22 49-70 34-55 (262)
265 3gfo_A Cobalt import ATP-bindi 92.2 0.068 2.3E-06 55.2 3.2 22 49-70 36-57 (275)
266 1g6h_A High-affinity branched- 92.2 0.068 2.3E-06 54.5 3.1 23 49-71 35-57 (257)
267 2ff7_A Alpha-hemolysin translo 92.1 0.07 2.4E-06 54.1 3.1 23 49-71 37-59 (247)
268 1cip_A Protein (guanine nucleo 92.1 0.039 1.3E-06 59.1 1.2 70 147-229 192-274 (353)
269 2qi9_C Vitamin B12 import ATP- 92.0 0.075 2.6E-06 54.0 3.2 23 49-71 28-50 (249)
270 1ji0_A ABC transporter; ATP bi 92.0 0.075 2.6E-06 53.6 3.1 23 49-71 34-56 (240)
271 2olj_A Amino acid ABC transpor 91.9 0.078 2.7E-06 54.3 3.2 22 49-70 52-73 (263)
272 1vpl_A ABC transporter, ATP-bi 91.9 0.079 2.7E-06 54.1 3.2 23 49-71 43-65 (256)
273 2d2e_A SUFC protein; ABC-ATPas 91.9 0.08 2.8E-06 53.7 3.2 22 49-70 31-52 (250)
274 2ghi_A Transport protein; mult 91.8 0.08 2.7E-06 54.1 3.1 23 49-71 48-70 (260)
275 4gp7_A Metallophosphoesterase; 91.8 0.084 2.9E-06 50.0 3.1 21 49-69 11-31 (171)
276 2eyu_A Twitching motility prot 91.8 0.068 2.3E-06 54.7 2.6 22 49-70 27-48 (261)
277 2zu0_C Probable ATP-dependent 91.8 0.085 2.9E-06 54.1 3.3 23 49-71 48-70 (267)
278 1htw_A HI0065; nucleotide-bind 91.7 0.073 2.5E-06 50.2 2.5 23 49-71 35-57 (158)
279 2ixe_A Antigen peptide transpo 91.7 0.082 2.8E-06 54.4 3.1 22 49-70 47-68 (271)
280 1odf_A YGR205W, hypothetical 3 91.6 0.16 5.5E-06 52.8 5.2 49 22-70 6-54 (290)
281 2nq2_C Hypothetical ABC transp 91.6 0.086 2.9E-06 53.6 3.1 30 49-80 33-62 (253)
282 2yz2_A Putative ABC transporte 91.6 0.088 3E-06 53.9 3.1 23 49-71 35-57 (266)
283 2ihy_A ABC transporter, ATP-bi 91.5 0.09 3.1E-06 54.4 3.2 23 49-71 49-71 (279)
284 3asz_A Uridine kinase; cytidin 91.5 0.071 2.4E-06 51.9 2.3 22 49-70 8-29 (211)
285 2f1r_A Molybdopterin-guanine d 91.4 0.049 1.7E-06 52.1 0.9 23 48-70 3-25 (171)
286 2yv5_A YJEQ protein; hydrolase 91.2 0.14 4.7E-06 53.5 4.3 21 48-68 166-186 (302)
287 2v9p_A Replication protein E1; 91.1 0.09 3.1E-06 55.1 2.7 22 49-70 128-149 (305)
288 2j41_A Guanylate kinase; GMP, 91.1 0.094 3.2E-06 50.6 2.7 22 49-70 8-29 (207)
289 3nh6_A ATP-binding cassette SU 91.0 0.082 2.8E-06 55.5 2.3 22 49-70 82-103 (306)
290 4a74_A DNA repair and recombin 91.0 0.13 4.4E-06 50.4 3.6 30 49-78 27-56 (231)
291 2pjz_A Hypothetical protein ST 90.9 0.11 3.9E-06 53.1 3.2 25 49-75 32-56 (263)
292 4f4c_A Multidrug resistance pr 90.8 0.26 8.8E-06 61.8 6.9 22 49-70 446-467 (1321)
293 3b85_A Phosphate starvation-in 90.8 0.072 2.5E-06 52.6 1.5 21 50-70 25-45 (208)
294 3kta_A Chromosome segregation 90.7 0.097 3.3E-06 49.6 2.3 23 48-70 27-49 (182)
295 1kag_A SKI, shikimate kinase I 90.7 0.11 3.6E-06 48.8 2.6 22 49-70 6-27 (173)
296 3h2y_A GTPase family protein; 90.7 0.48 1.6E-05 50.8 8.0 56 172-231 57-112 (368)
297 1azs_C GS-alpha; complex (lyas 90.5 0.1 3.6E-06 56.7 2.5 69 148-229 217-298 (402)
298 3jvv_A Twitching mobility prot 90.4 0.11 3.6E-06 55.8 2.5 22 49-70 125-146 (356)
299 2bbs_A Cystic fibrosis transme 90.4 0.12 4.1E-06 53.7 2.9 23 49-71 66-88 (290)
300 2bdt_A BH3686; alpha-beta prot 90.4 0.11 3.9E-06 49.5 2.5 21 49-69 4-24 (189)
301 3ec1_A YQEH GTPase; atnos1, at 90.3 0.49 1.7E-05 50.7 7.6 56 172-231 59-114 (369)
302 3lnc_A Guanylate kinase, GMP k 90.3 0.094 3.2E-06 52.0 1.8 22 49-70 29-51 (231)
303 4eun_A Thermoresistant glucoki 90.2 0.12 4.1E-06 50.0 2.6 23 48-70 30-52 (200)
304 2bbw_A Adenylate kinase 4, AK4 90.1 0.18 6E-06 50.6 3.7 24 48-71 28-54 (246)
305 3aez_A Pantothenate kinase; tr 90.1 0.12 4.2E-06 54.2 2.6 26 45-70 87-113 (312)
306 2i3b_A HCR-ntpase, human cance 90.0 0.13 4.5E-06 49.9 2.6 22 49-70 3-24 (189)
307 2qor_A Guanylate kinase; phosp 89.8 0.17 5.7E-06 49.2 3.1 23 48-70 13-35 (204)
308 3tui_C Methionine import ATP-b 89.7 0.16 5.6E-06 54.5 3.3 23 49-71 56-78 (366)
309 1z47_A CYSA, putative ABC-tran 89.6 0.17 5.7E-06 54.2 3.2 23 49-71 43-65 (355)
310 3fvq_A Fe(3+) IONS import ATP- 89.5 0.16 5.4E-06 54.4 3.0 23 49-71 32-54 (359)
311 3ec2_A DNA replication protein 89.5 0.22 7.5E-06 47.1 3.7 44 24-70 18-61 (180)
312 2it1_A 362AA long hypothetical 89.4 0.18 6.2E-06 54.1 3.3 23 49-71 31-53 (362)
313 1knq_A Gluconate kinase; ALFA/ 89.4 0.16 5.4E-06 47.8 2.5 22 49-70 10-31 (175)
314 2yyz_A Sugar ABC transporter, 89.3 0.18 6.2E-06 54.0 3.2 23 49-71 31-53 (359)
315 1rz3_A Hypothetical protein rb 89.3 0.27 9.1E-06 47.7 4.2 22 49-70 24-45 (201)
316 3rlf_A Maltose/maltodextrin im 89.2 0.19 6.4E-06 54.3 3.3 23 49-71 31-53 (381)
317 3lw7_A Adenylate kinase relate 89.2 0.22 7.4E-06 46.1 3.4 20 48-67 2-21 (179)
318 1g29_1 MALK, maltose transport 89.2 0.19 6.3E-06 54.2 3.2 23 49-71 31-53 (372)
319 1lw7_A Transcriptional regulat 89.1 0.15 5.1E-06 54.5 2.4 23 48-70 171-193 (365)
320 1p9r_A General secretion pathw 89.1 0.15 5.3E-06 55.7 2.5 22 49-70 169-190 (418)
321 1v43_A Sugar-binding transport 89.0 0.2 6.8E-06 54.0 3.3 23 49-71 39-61 (372)
322 2xtz_A Guanine nucleotide-bind 89.0 0.085 2.9E-06 56.5 0.3 70 147-229 182-264 (354)
323 1xjc_A MOBB protein homolog; s 88.9 0.25 8.6E-06 47.1 3.6 24 47-70 4-27 (169)
324 2ewv_A Twitching motility prot 88.9 0.16 5.4E-06 54.7 2.5 22 49-70 138-159 (372)
325 1u0l_A Probable GTPase ENGC; p 88.9 0.093 3.2E-06 54.7 0.6 66 149-230 64-130 (301)
326 3uie_A Adenylyl-sulfate kinase 88.8 0.18 6E-06 48.8 2.5 23 48-70 26-48 (200)
327 2jeo_A Uridine-cytidine kinase 88.8 0.18 6E-06 50.7 2.5 22 49-70 27-48 (245)
328 1cke_A CK, MSSA, protein (cyti 88.7 0.2 6.9E-06 49.0 2.9 23 48-70 6-28 (227)
329 1f2t_A RAD50 ABC-ATPase; DNA d 88.7 0.22 7.4E-06 46.2 2.9 21 48-68 24-44 (149)
330 3kb2_A SPBC2 prophage-derived 88.6 0.26 8.7E-06 45.8 3.4 22 48-69 2-23 (173)
331 3d31_A Sulfate/molybdate ABC t 88.4 0.17 5.8E-06 54.0 2.2 23 49-71 28-50 (348)
332 4e22_A Cytidylate kinase; P-lo 88.2 0.18 6.3E-06 50.9 2.2 24 48-71 28-54 (252)
333 1nij_A Hypothetical protein YJ 88.1 0.14 4.8E-06 53.8 1.3 25 47-71 4-28 (318)
334 3gd7_A Fusion complex of cysti 88.0 0.23 8E-06 53.8 3.0 23 49-71 49-71 (390)
335 1sq5_A Pantothenate kinase; P- 87.9 0.2 6.8E-06 52.3 2.3 22 49-70 82-103 (308)
336 2qt1_A Nicotinamide riboside k 87.8 0.27 9.3E-06 47.6 3.1 27 44-70 17-44 (207)
337 4b4t_L 26S protease subunit RP 87.7 1.8 6.2E-05 47.4 10.0 33 34-70 205-238 (437)
338 1jjv_A Dephospho-COA kinase; P 87.6 0.29 1E-05 47.3 3.2 21 49-69 4-24 (206)
339 2if2_A Dephospho-COA kinase; a 87.6 0.24 8.3E-06 47.7 2.6 21 49-69 3-23 (204)
340 2ehv_A Hypothetical protein PH 87.5 0.29 9.9E-06 48.5 3.2 21 49-69 32-52 (251)
341 1oxx_K GLCV, glucose, ABC tran 87.5 0.17 5.8E-06 54.1 1.5 23 49-71 33-55 (353)
342 2npi_A Protein CLP1; CLP1-PCF1 87.5 0.21 7.3E-06 55.3 2.3 26 46-71 137-162 (460)
343 2x8a_A Nuclear valosin-contain 87.3 0.37 1.3E-05 49.4 3.9 32 35-70 35-67 (274)
344 3t61_A Gluconokinase; PSI-biol 87.2 0.26 8.7E-06 47.6 2.5 23 48-70 19-41 (202)
345 2jaq_A Deoxyguanosine kinase; 87.1 0.36 1.2E-05 46.1 3.5 22 49-70 2-23 (205)
346 4b4t_K 26S protease regulatory 87.1 1.7 5.9E-05 47.5 9.3 33 34-70 196-229 (428)
347 2vp4_A Deoxynucleoside kinase; 87.0 0.22 7.4E-06 49.5 1.9 22 49-70 22-43 (230)
348 1ly1_A Polynucleotide kinase; 87.0 0.34 1.2E-05 45.3 3.2 21 49-69 4-24 (181)
349 3qf7_A RAD50; ABC-ATPase, ATPa 86.9 0.31 1.1E-05 52.2 3.2 23 46-68 22-44 (365)
350 2kjq_A DNAA-related protein; s 86.9 0.19 6.3E-06 46.7 1.2 25 46-70 35-59 (149)
351 1qhx_A CPT, protein (chloramph 86.3 0.37 1.3E-05 45.1 3.0 22 49-70 5-26 (178)
352 1kht_A Adenylate kinase; phosp 85.8 0.41 1.4E-05 45.2 3.1 21 49-69 5-25 (192)
353 1nks_A Adenylate kinase; therm 85.8 0.38 1.3E-05 45.4 2.9 21 49-69 3-23 (194)
354 3tqc_A Pantothenate kinase; bi 85.8 0.32 1.1E-05 51.2 2.6 22 49-70 94-115 (321)
355 1yqt_A RNAse L inhibitor; ATP- 85.7 0.41 1.4E-05 54.1 3.5 22 49-70 49-70 (538)
356 1ixz_A ATP-dependent metallopr 85.6 0.53 1.8E-05 47.1 3.9 21 50-70 52-72 (254)
357 3vaa_A Shikimate kinase, SK; s 85.6 0.48 1.6E-05 45.7 3.5 22 48-69 26-47 (199)
358 4b4t_M 26S protease regulatory 85.3 3.2 0.00011 45.4 10.3 33 34-70 205-238 (434)
359 3thx_A DNA mismatch repair pro 85.1 3.5 0.00012 49.6 11.3 19 49-67 664-682 (934)
360 3trf_A Shikimate kinase, SK; a 85.1 0.52 1.8E-05 44.5 3.4 22 47-68 5-26 (185)
361 2yv5_A YJEQ protein; hydrolase 85.0 0.5 1.7E-05 49.1 3.5 53 177-230 72-125 (302)
362 3b60_A Lipid A export ATP-bind 84.9 0.43 1.5E-05 54.4 3.2 22 49-70 371-392 (582)
363 3b5x_A Lipid A export ATP-bind 84.9 0.45 1.5E-05 54.2 3.3 22 49-70 371-392 (582)
364 3ozx_A RNAse L inhibitor; ATP 84.7 0.45 1.5E-05 53.8 3.2 22 49-70 27-48 (538)
365 2rhm_A Putative kinase; P-loop 84.6 0.47 1.6E-05 45.0 2.9 21 49-69 7-27 (193)
366 3euj_A Chromosome partition pr 84.6 0.39 1.3E-05 53.5 2.6 23 48-70 30-52 (483)
367 1y63_A LMAJ004144AAA protein; 84.5 0.55 1.9E-05 44.7 3.3 24 47-70 10-33 (184)
368 2w0m_A SSO2452; RECA, SSPF, un 84.4 0.42 1.4E-05 46.5 2.5 22 49-70 25-46 (235)
369 4b4t_J 26S protease regulatory 84.4 4.6 0.00016 43.7 10.8 33 34-70 172-205 (405)
370 3cm0_A Adenylate kinase; ATP-b 84.3 0.54 1.8E-05 44.4 3.1 20 49-68 6-25 (186)
371 3qks_A DNA double-strand break 84.3 0.53 1.8E-05 45.9 3.2 21 48-68 24-44 (203)
372 2v54_A DTMP kinase, thymidylat 84.2 0.52 1.8E-05 45.1 3.0 22 49-70 6-27 (204)
373 3j16_B RLI1P; ribosome recycli 84.2 0.49 1.7E-05 54.3 3.3 23 49-71 105-127 (608)
374 2pez_A Bifunctional 3'-phospho 84.1 0.47 1.6E-05 44.7 2.6 22 49-70 7-28 (179)
375 2plr_A DTMP kinase, probable t 84.0 0.56 1.9E-05 45.1 3.2 21 49-69 6-26 (213)
376 1gtv_A TMK, thymidylate kinase 83.8 0.27 9.1E-06 47.6 0.7 22 49-70 2-23 (214)
377 1via_A Shikimate kinase; struc 83.8 0.57 2E-05 43.9 3.1 22 48-69 5-26 (175)
378 3fb4_A Adenylate kinase; psych 83.8 0.6 2.1E-05 45.3 3.3 20 49-68 2-21 (216)
379 1iy2_A ATP-dependent metallopr 83.7 0.72 2.5E-05 46.9 4.0 21 50-70 76-96 (278)
380 3bk7_A ABC transporter ATP-bin 83.7 0.55 1.9E-05 53.8 3.4 23 49-71 119-141 (607)
381 2z0h_A DTMP kinase, thymidylat 83.6 0.58 2E-05 44.4 3.1 22 49-70 2-23 (197)
382 3qf4_B Uncharacterized ABC tra 83.6 0.42 1.4E-05 54.7 2.4 22 49-70 383-404 (598)
383 2yl4_A ATP-binding cassette SU 83.4 0.41 1.4E-05 54.8 2.2 22 49-70 372-393 (595)
384 3iij_A Coilin-interacting nucl 83.4 0.59 2E-05 44.0 3.0 22 47-68 11-32 (180)
385 3ozx_A RNAse L inhibitor; ATP 83.4 0.55 1.9E-05 53.1 3.2 23 49-71 296-318 (538)
386 2iyv_A Shikimate kinase, SK; t 83.4 0.55 1.9E-05 44.3 2.8 21 48-68 3-23 (184)
387 3qf4_A ABC transporter, ATP-bi 83.2 0.43 1.5E-05 54.5 2.3 22 49-70 371-392 (587)
388 4a82_A Cystic fibrosis transme 83.2 0.38 1.3E-05 54.8 1.8 22 49-70 369-390 (578)
389 2c95_A Adenylate kinase 1; tra 83.0 0.68 2.3E-05 43.9 3.3 22 48-69 10-31 (196)
390 1cr0_A DNA primase/helicase; R 83.0 0.47 1.6E-05 48.8 2.3 22 49-70 37-58 (296)
391 1yqt_A RNAse L inhibitor; ATP- 83.0 0.64 2.2E-05 52.5 3.5 23 49-71 314-336 (538)
392 3dl0_A Adenylate kinase; phosp 83.0 0.68 2.3E-05 45.0 3.3 21 49-69 2-22 (216)
393 4b4t_I 26S protease regulatory 82.7 3.6 0.00012 44.9 9.2 32 35-70 207-239 (437)
394 2yvu_A Probable adenylyl-sulfa 82.7 0.68 2.3E-05 43.9 3.2 23 48-70 14-36 (186)
395 2wwf_A Thymidilate kinase, put 82.5 0.61 2.1E-05 44.9 2.8 22 48-69 11-32 (212)
396 3n70_A Transport activator; si 82.5 1.8 6.2E-05 39.3 5.9 38 29-70 10-47 (145)
397 2pbr_A DTMP kinase, thymidylat 82.5 0.67 2.3E-05 43.8 3.0 21 49-69 2-22 (195)
398 1e6c_A Shikimate kinase; phosp 82.4 0.68 2.3E-05 43.0 3.0 22 48-69 3-24 (173)
399 3bk7_A ABC transporter ATP-bin 82.3 0.65 2.2E-05 53.3 3.3 22 49-70 384-405 (607)
400 1nn5_A Similar to deoxythymidy 82.3 0.65 2.2E-05 44.8 2.9 21 49-69 11-31 (215)
401 1tev_A UMP-CMP kinase; ploop, 82.2 0.73 2.5E-05 43.5 3.2 21 49-69 5-25 (196)
402 2pt5_A Shikimate kinase, SK; a 82.2 0.78 2.7E-05 42.4 3.3 21 49-69 2-22 (168)
403 1qhl_A Protein (cell division 81.9 0.14 4.8E-06 51.3 -2.2 22 50-71 30-51 (227)
404 1jbk_A CLPB protein; beta barr 81.9 1.7 5.9E-05 40.2 5.6 24 47-70 43-66 (195)
405 1vht_A Dephospho-COA kinase; s 81.8 0.73 2.5E-05 44.9 3.0 21 49-69 6-26 (218)
406 4b4t_H 26S protease regulatory 81.7 5.4 0.00018 43.9 10.2 33 34-70 233-266 (467)
407 2bwj_A Adenylate kinase 5; pho 81.6 0.82 2.8E-05 43.5 3.3 22 48-69 13-34 (199)
408 3qkt_A DNA double-strand break 81.4 0.7 2.4E-05 48.8 2.9 21 48-68 24-44 (339)
409 3thx_B DNA mismatch repair pro 81.3 2.9 0.0001 50.1 8.5 22 49-70 675-696 (918)
410 1tue_A Replication protein E1; 81.1 1.5 5.3E-05 43.1 5.0 40 22-69 38-80 (212)
411 3j16_B RLI1P; ribosome recycli 81.1 0.77 2.6E-05 52.6 3.3 22 50-71 381-402 (608)
412 1uf9_A TT1252 protein; P-loop, 81.1 0.78 2.7E-05 43.7 2.9 23 48-70 9-31 (203)
413 1fnn_A CDC6P, cell division co 80.9 1.2 4E-05 47.1 4.5 24 47-70 44-67 (389)
414 1zd8_A GTP:AMP phosphotransfer 80.9 0.88 3E-05 44.7 3.3 22 48-69 8-29 (227)
415 2obl_A ESCN; ATPase, hydrolase 80.7 0.69 2.4E-05 49.2 2.6 23 49-71 73-95 (347)
416 1qf9_A UMP/CMP kinase, protein 80.6 0.83 2.8E-05 43.0 2.9 22 48-69 7-28 (194)
417 2cvh_A DNA repair and recombin 80.5 0.74 2.5E-05 44.5 2.5 21 49-69 22-42 (220)
418 3nwj_A ATSK2; P loop, shikimat 80.3 0.72 2.5E-05 46.7 2.4 23 47-69 48-70 (250)
419 1n0w_A DNA repair protein RAD5 80.2 0.76 2.6E-05 45.1 2.6 26 49-74 26-51 (243)
420 3ake_A Cytidylate kinase; CMP 80.2 1 3.4E-05 43.2 3.4 22 48-69 3-24 (208)
421 3auy_A DNA double-strand break 80.2 0.81 2.8E-05 48.9 2.9 21 48-68 26-46 (371)
422 2cdn_A Adenylate kinase; phosp 80.2 0.94 3.2E-05 43.5 3.2 21 49-69 22-42 (201)
423 2chg_A Replication factor C sm 80.1 2 6.7E-05 40.8 5.4 38 27-70 24-61 (226)
424 2dpy_A FLII, flagellum-specifi 80.0 0.74 2.5E-05 50.6 2.6 23 49-71 159-181 (438)
425 1gvn_B Zeta; postsegregational 80.0 0.78 2.7E-05 47.3 2.6 45 24-70 11-56 (287)
426 1e4v_A Adenylate kinase; trans 80.0 0.94 3.2E-05 44.0 3.1 21 49-69 2-22 (214)
427 1ukz_A Uridylate kinase; trans 79.8 0.97 3.3E-05 43.3 3.1 22 48-69 16-37 (203)
428 1svm_A Large T antigen; AAA+ f 79.7 0.76 2.6E-05 49.5 2.5 22 49-70 171-192 (377)
429 3a4m_A L-seryl-tRNA(SEC) kinas 79.6 0.96 3.3E-05 45.7 3.1 22 48-69 5-26 (260)
430 4aby_A DNA repair protein RECN 79.6 0.32 1.1E-05 52.5 -0.5 23 48-70 61-83 (415)
431 1zak_A Adenylate kinase; ATP:A 79.5 0.92 3.2E-05 44.3 2.9 22 48-69 6-27 (222)
432 2ze6_A Isopentenyl transferase 79.4 0.99 3.4E-05 45.5 3.2 22 49-70 3-24 (253)
433 1in4_A RUVB, holliday junction 79.4 0.81 2.8E-05 48.1 2.6 24 47-70 51-74 (334)
434 2o5v_A DNA replication and rep 79.3 0.81 2.8E-05 48.9 2.6 23 48-70 27-49 (359)
435 1w1w_A Structural maintenance 79.3 0.79 2.7E-05 50.0 2.5 23 49-71 28-50 (430)
436 1m7g_A Adenylylsulfate kinase; 79.2 0.86 2.9E-05 44.3 2.5 22 49-70 27-48 (211)
437 1aky_A Adenylate kinase; ATP:A 79.2 1.2 4E-05 43.5 3.5 22 48-69 5-26 (220)
438 1t9h_A YLOQ, probable GTPase E 79.1 1.8 6.3E-05 45.1 5.2 51 180-231 82-133 (307)
439 2vli_A Antibiotic resistance p 79.0 0.71 2.4E-05 43.3 1.8 21 49-69 7-27 (183)
440 1e69_A Chromosome segregation 78.9 0.71 2.4E-05 48.3 2.0 23 48-70 25-47 (322)
441 4f4c_A Multidrug resistance pr 77.8 0.68 2.3E-05 58.0 1.6 22 49-70 1107-1128(1321)
442 2xb4_A Adenylate kinase; ATP-b 77.8 1.3 4.5E-05 43.5 3.4 21 49-69 2-22 (223)
443 2ius_A DNA translocase FTSK; n 77.7 1 3.6E-05 50.4 2.9 23 47-69 167-189 (512)
444 1zuh_A Shikimate kinase; alpha 77.5 1.3 4.3E-05 41.1 3.1 22 47-68 7-28 (168)
445 2iw3_A Elongation factor 3A; a 77.5 0.79 2.7E-05 55.2 2.0 23 49-71 701-723 (986)
446 4eaq_A DTMP kinase, thymidylat 77.1 1.3 4.4E-05 44.0 3.1 22 49-70 28-49 (229)
447 3cnl_A YLQF, putative uncharac 77.0 1.1 3.8E-05 45.5 2.7 49 176-230 13-61 (262)
448 3tlx_A Adenylate kinase 2; str 76.6 1.5 5E-05 43.9 3.4 22 48-69 30-51 (243)
449 2grj_A Dephospho-COA kinase; T 76.6 1.3 4.6E-05 42.7 3.0 24 46-69 11-34 (192)
450 1sxj_E Activator 1 40 kDa subu 76.4 0.99 3.4E-05 47.3 2.2 25 46-70 35-59 (354)
451 3exa_A TRNA delta(2)-isopenten 76.4 1.7 5.7E-05 45.7 3.8 23 48-70 4-26 (322)
452 1nlf_A Regulatory protein REPA 76.1 1.1 3.7E-05 45.7 2.3 21 49-69 32-52 (279)
453 3syl_A Protein CBBX; photosynt 76.1 2.8 9.6E-05 42.8 5.5 33 38-70 58-90 (309)
454 2p5t_B PEZT; postsegregational 75.9 0.93 3.2E-05 45.6 1.7 26 45-70 29-55 (253)
455 1ak2_A Adenylate kinase isoenz 75.7 1.6 5.6E-05 43.0 3.5 22 48-69 17-38 (233)
456 3g5u_A MCG1178, multidrug resi 75.5 1.2 4E-05 55.7 2.8 22 49-70 418-439 (1284)
457 1lv7_A FTSH; alpha/beta domain 75.4 1.3 4.3E-05 44.3 2.6 22 49-70 47-68 (257)
458 3be4_A Adenylate kinase; malar 75.4 1.6 5.5E-05 42.5 3.3 22 48-69 6-27 (217)
459 3bos_A Putative DNA replicatio 75.0 1.8 6.1E-05 42.1 3.5 38 27-70 38-75 (242)
460 1sxj_C Activator 1 40 kDa subu 74.7 2.5 8.6E-05 44.2 4.8 38 27-70 32-69 (340)
461 3a8t_A Adenylate isopentenyltr 74.4 2.5 8.5E-05 44.7 4.6 23 48-70 41-63 (339)
462 3r20_A Cytidylate kinase; stru 74.3 1.7 5.8E-05 43.5 3.2 21 49-69 11-31 (233)
463 2p65_A Hypothetical protein PF 74.1 1.5 5.1E-05 40.6 2.6 24 47-70 43-66 (187)
464 2ga8_A Hypothetical 39.9 kDa p 74.1 3.7 0.00013 43.7 5.9 43 26-70 5-47 (359)
465 1uj2_A Uridine-cytidine kinase 74.1 1.6 5.6E-05 43.6 3.0 22 48-69 23-44 (252)
466 1ltq_A Polynucleotide kinase; 74.0 1.7 5.7E-05 44.5 3.2 21 49-69 4-24 (301)
467 1q3t_A Cytidylate kinase; nucl 73.9 1.5 5.3E-05 43.3 2.7 23 47-69 16-38 (236)
468 2qz4_A Paraplegin; AAA+, SPG7, 73.8 4 0.00014 40.4 5.9 23 48-70 40-62 (262)
469 2f6r_A COA synthase, bifunctio 73.8 1.6 5.3E-05 44.8 2.8 20 49-68 77-96 (281)
470 2w58_A DNAI, primosome compone 73.5 1.8 6.3E-05 41.3 3.1 44 25-70 34-77 (202)
471 3foz_A TRNA delta(2)-isopenten 73.1 1.9 6.4E-05 45.2 3.2 23 48-70 11-33 (316)
472 3cr8_A Sulfate adenylyltranfer 73.0 1 3.4E-05 51.0 1.2 22 49-70 371-392 (552)
473 2iw3_A Elongation factor 3A; a 72.8 1.5 5.2E-05 52.8 2.8 24 49-72 463-486 (986)
474 3co5_A Putative two-component 72.4 2.2 7.6E-05 38.7 3.2 21 50-70 30-50 (143)
475 2qen_A Walker-type ATPase; unk 71.9 4.3 0.00015 41.8 5.7 23 48-70 32-54 (350)
476 3ux8_A Excinuclease ABC, A sub 71.9 1.2 4.1E-05 51.6 1.5 20 49-68 350-369 (670)
477 2iut_A DNA translocase FTSK; n 71.3 2 6.7E-05 48.7 3.1 23 47-69 214-236 (574)
478 2qmh_A HPR kinase/phosphorylas 71.0 2.2 7.4E-05 41.8 2.9 23 48-70 35-57 (205)
479 4ag6_A VIRB4 ATPase, type IV s 71.0 2.1 7.1E-05 45.9 3.1 26 46-71 34-59 (392)
480 3g5u_A MCG1178, multidrug resi 70.9 2 6.8E-05 53.6 3.3 22 49-70 1061-1082(1284)
481 1njg_A DNA polymerase III subu 70.8 2.3 7.8E-05 40.9 3.1 22 49-70 47-68 (250)
482 3m6a_A ATP-dependent protease 70.4 3.1 0.00011 46.8 4.5 27 44-70 105-131 (543)
483 2ocp_A DGK, deoxyguanosine kin 69.4 2.4 8.1E-05 42.0 2.9 22 49-70 4-25 (241)
484 3sr0_A Adenylate kinase; phosp 68.9 2.9 9.8E-05 40.8 3.3 22 49-70 2-23 (206)
485 3h4m_A Proteasome-activating n 68.7 4.6 0.00016 40.6 5.0 23 48-70 52-74 (285)
486 2dr3_A UPF0273 protein PH0284; 68.6 2.5 8.7E-05 41.3 2.9 21 49-69 25-45 (247)
487 1pzn_A RAD51, DNA repair and r 68.5 2 6.9E-05 45.5 2.3 23 49-71 133-155 (349)
488 1a5t_A Delta prime, HOLB; zinc 68.4 44 0.0015 34.5 12.7 24 47-70 23-47 (334)
489 3zvl_A Bifunctional polynucleo 68.2 2.5 8.6E-05 45.9 3.1 23 48-70 259-281 (416)
490 3d3q_A TRNA delta(2)-isopenten 67.9 2.7 9.3E-05 44.5 3.1 22 49-70 9-30 (340)
491 1p5z_B DCK, deoxycytidine kina 67.7 1.8 6E-05 43.6 1.6 24 47-70 24-47 (263)
492 3t15_A Ribulose bisphosphate c 67.4 4.6 0.00016 41.4 4.7 27 44-70 32-59 (293)
493 2fna_A Conserved hypothetical 67.3 4.8 0.00017 41.4 4.9 23 48-70 31-53 (357)
494 2dhr_A FTSH; AAA+ protein, hex 67.0 5.3 0.00018 44.5 5.4 22 49-70 66-87 (499)
495 2bjv_A PSP operon transcriptio 66.8 7 0.00024 38.9 5.9 22 49-70 31-52 (265)
496 3umf_A Adenylate kinase; rossm 66.5 3.3 0.00011 40.9 3.2 27 44-70 25-52 (217)
497 1a7j_A Phosphoribulokinase; tr 66.3 1.7 5.9E-05 44.8 1.1 22 48-69 6-27 (290)
498 2ce7_A Cell division protein F 66.3 3.4 0.00012 45.8 3.6 22 49-70 51-72 (476)
499 2qby_A CDC6 homolog 1, cell di 66.2 2.4 8.3E-05 44.3 2.3 23 48-70 46-68 (386)
500 1ko7_A HPR kinase/phosphatase; 66.0 2.6 8.8E-05 44.1 2.4 23 49-71 146-168 (314)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=1.2e-114 Score=1010.75 Aligned_cols=669 Identities=42% Similarity=0.658 Sum_probs=558.8
Q ss_pred CCcchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCcccee
Q 005171 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGE 100 (710)
Q Consensus 21 ~~~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~ 100 (710)
-++++++++|+|+|.++.+|.+..+++|+|+|||.+|+|||||||+|+|.+|||++.++|||||+++++.+.+ .+|++
T Consensus 25 ~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~--~~~~~ 102 (772)
T 3zvr_A 25 GMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST--TEYAE 102 (772)
T ss_dssp CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECS--SCEEE
T ss_pred cHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCC--cchhh
Confidence 4699999999999999999998889999999999999999999999999999999999999999999998775 48999
Q ss_pred eecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHH
Q 005171 101 FLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMS 180 (710)
Q Consensus 101 ~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~ 180 (710)
+.+.+++.++++++++.++...+.+..|.+++++.+++.++|++|+.++++||||||+.+.+.++||.++...+.+++..
T Consensus 103 ~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~ 182 (772)
T 3zvr_A 103 FLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQ 182 (772)
T ss_dssp CSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHH
T ss_pred eeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceEEEEcCChhhh
Q 005171 181 YIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 260 (710)
Q Consensus 181 yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di 260 (710)
|+....++||+|++++.++..++.+.+++.+++.+.|+|+|+||+|+++++....+++.++.+++++||+.|+++|+.+.
T Consensus 183 yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G 262 (772)
T 3zvr_A 183 FVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDI 262 (772)
T ss_dssp HHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEES
T ss_pred HHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEeccccc
Confidence 99988889999999999999999878999999999999999999999988877777777777888999999999999988
Q ss_pred hhcccHHHHHHHHHHhccCCCccccccccCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCCCCCCh-
Q 005171 261 MFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESK- 339 (710)
Q Consensus 261 ~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~- 339 (710)
.....+.+++..|.+||..+|+|..+.+++|+..|.+.|.+.|..||++.||.++.+|+.++..++.++++||+++++.
T Consensus 263 ~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~~~~~~~ 342 (772)
T 3zvr_A 263 DGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKNFRPDDP 342 (772)
T ss_dssp SSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred ccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCCCCCCCh
Confidence 7778899999999999999999988899999999999999999999999999999999999999999999999776544
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCccccccccccccchHHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHhhcCCCCCC
Q 005171 340 AGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPKSAL 419 (710)
Q Consensus 340 ~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~f~~~l~~~~~~~~l~~~dI~~~i~n~~G~~~~l 419 (710)
.++..+|++++++|++.|.++|+|.++++++.+|+|||||+|+||+.|+..+..+++.+.+++.+|+++|+|++|+++++
T Consensus 343 ~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n~~G~~~~l 422 (772)
T 3zvr_A 343 ARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGL 422 (772)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHhCCCCCCCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 005171 420 FVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGHIIEM 499 (710)
Q Consensus 420 f~p~~~fe~lvk~~i~~l~~Psl~c~~~V~~eL~~i~~~~~~~~l~rfp~L~~~i~~vv~~~l~e~~~~a~~~v~~li~~ 499 (710)
|+|+.+||.||++||++|++||++||+.||+||.+++++|. .+|.|||+|++++.+++.++|++++.+|+++|.+||+|
T Consensus 423 f~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~-~~l~RfP~Lr~ei~~iv~~~Lre~~~~t~~~V~~LId~ 501 (772)
T 3zvr_A 423 FTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS-EKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDI 501 (772)
T ss_dssp CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHG-GGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999995 79999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCCCCchHHHHHHHHhhhhcCCCCCcccCCCCCCCCCCCCcccchhhhHhHhhhccccccCCC--------
Q 005171 500 EMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQG-------- 571 (710)
Q Consensus 500 E~~yInT~hpdF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 571 (710)
|++||||+||||+++++|+....++.+.+.. . .........++|++..+.+.+.+++
T Consensus 502 E~ayintnHpdf~~~~~~~~~~~~~~~~~~~-------~--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 566 (772)
T 3zvr_A 502 ELAYMNTNHEDFIGFANAQQRSNQMNKKKTS-------G--------NQDEILVIRKGWLTINNIGIMKGGSKEYWFVLT 566 (772)
T ss_dssp HHTCCCTTCTTCCCC------------------------------------CCEEEEEEEEESSSCCC---CCEEEEEEE
T ss_pred hcCCCCCCChhhhchHHHHHHHHHHhhcccc-------c--------CCccccceeeeeeeecccccccCCCccceeecc
Confidence 9999999999999999988655443222100 0 0001125678888877766654332
Q ss_pred ------CCCccccccc-------CCCCCCCCCCCcc---ccccCCCCCCCCCCCCCCCCCCCCCCccchhhHHhh-hhcC
Q 005171 572 ------VRPTVEVEKV-------APAGNTSGSSWGI---SSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAM-IHLR 634 (710)
Q Consensus 572 ------~~~~~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 634 (710)
++.+++.+++ ...++...||++. ..+|+. ..++.+ |++.+...+++++...++|.+. .+++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 644 (772)
T 3zvr_A 567 AENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNT-EQRNVY-KDYRQLELACETQEEVDSWKASFLRAG 644 (772)
T ss_dssp SSEEEEESSTTCCCEEEEEECTTEEEEEC-------CEEEEEEET-TSSCSB-TTBSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred ccccccccchhhhcccccccccccccchhhhccccccccccccCC-cccccc-chhhhhhhhccccccchhhHHhhhhcc
Confidence 1232222221 1122334455542 234554 345666 8888888888888777777643 4666
Q ss_pred CCCccc---------------CCCCCCChhHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcc------
Q 005171 635 EPPTIL---------------RPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVSGTINGIL------ 693 (710)
Q Consensus 635 ~~p~~~---------------~~~~~~s~rE~~e~e~Ir~LI~SYF~IVRK~I~D~VPKAIMhfLVN~~k~~l~------ 693 (710)
++|+.. .....+++|+++|||+||+||+|||+||||||+|+|||||||||||++|++++
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ 724 (772)
T 3zvr_A 645 VYPERVGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLAN 724 (772)
T ss_dssp CCBC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHH
T ss_pred cCCccccccccccccCCccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666443 22234678999999999999999999999999999999999999999999999
Q ss_pred cccCCCccchhhhccC
Q 005171 694 LLNKPSPSFMLCESYK 709 (710)
Q Consensus 694 ~~~~~~~~~~~~~~~~ 709 (710)
||+++|+++||+||+.
T Consensus 725 ly~~~~~~~lm~Es~~ 740 (772)
T 3zvr_A 725 LYSCGDQNTLMEESAE 740 (772)
T ss_dssp HHHTCCTTTTTCCCHH
T ss_pred HhcccCHHHHHhcCHH
Confidence 9999999999999973
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=1.7e-83 Score=744.32 Aligned_cols=552 Identities=30% Similarity=0.449 Sum_probs=459.5
Q ss_pred CcCCCCcchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCc
Q 005171 17 SAVPLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDE 96 (710)
Q Consensus 17 ~~~~~~~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~ 96 (710)
....+.+...++++ +.|.++.+|++..+++|+|+|||++||||||||++|+|. +.|+++|.||+++..+.+.+.....
T Consensus 16 l~~~~~~~~r~ll~-~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~ 93 (608)
T 3szr_A 16 LCSQYEEKVRPCID-LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNED 93 (608)
T ss_dssp ----CHHHHHHHHH-HHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSS
T ss_pred hhHHHHHHHHHHHH-HHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccc
Confidence 33345666667775 456778899999999999999999999999999999999 5699999999999998776655444
Q ss_pred cceeeecCC--CccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHH
Q 005171 97 EYGEFLHLP--GKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARI 174 (710)
Q Consensus 97 ~~~~~~~~~--g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i 174 (710)
.|....... ...+.++..+.+.+........+.+.+++...+.+.+.+|..|+|+|+|+||+...++++++.+...++
T Consensus 94 ~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i 173 (608)
T 3szr_A 94 KWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKI 173 (608)
T ss_dssp CCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHH
T ss_pred cceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHH
Confidence 555544322 234667788888888887777788889999999999999999999999999999998888988999999
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCcccc--HHHHHhCCccccccceEEE
Q 005171 175 RTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTD--ARNLLLGKVIPLRLGYVGV 252 (710)
Q Consensus 175 ~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~--~~~~l~~~~~~l~lG~~~V 252 (710)
.+++..|+.++.+++|+|++++.|.++++++++++.+++.|.+||+|+||+|++++++. ..+++.|+.+++++||++|
T Consensus 174 ~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v 253 (608)
T 3szr_A 174 KTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIV 253 (608)
T ss_dssp HHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECC
T ss_pred HHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999998875 4578899999999999999
Q ss_pred EcCChhhhhhcccHHHHHHHHHHhccCCCccccccc--cCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 005171 253 VNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLAD--RCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHA 330 (710)
Q Consensus 253 ~nrs~~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~--~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~ 330 (710)
+||+++|+..+.++.++++.|.+||.+||||+.+.+ ++||++|+++|+++|.+||+++||.++.+|+.++.+++.||+
T Consensus 254 ~nr~~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~ 333 (608)
T 3szr_A 254 KCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQ 333 (608)
T ss_dssp CCSCTTCTTTCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhcccCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998754 899999999999999999999999999999999999999999
Q ss_pred HhCCCCC-ChhhhHHHHHHHHHHHHHHHHhhccCCccccccccccccchHHHHHHHHHHHhhhh-cCCCCCCchHHHHHH
Q 005171 331 SYGEITE-SKAGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEE-VDPCEDLTDDDIRTA 408 (710)
Q Consensus 331 ~lg~~~~-~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~f~~~l~~-~~~~~~l~~~dI~~~ 408 (710)
+||++++ +..+++.+|++++++|++.|+++++|++.. ...++..+++|+.+|+. |...+.. .+++....+.+|+++
T Consensus 334 ~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~-~~~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~i~~~ 411 (608)
T 3szr_A 334 KYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETV-GEEDIRLFTRLRHEFHK-WSTIIENNFQEGHKILSRKIQKF 411 (608)
T ss_dssp TSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHSSCCCC-CTTCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcC-CCccccHHHHHHHHHHH-HHHHhhhcccccchhHHHHHHHH
Confidence 9999865 455688999999999999999999999752 23344455555665554 2222221 122344567899999
Q ss_pred HHhhcCCCCCCCCCChhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHHhhhh
Q 005171 409 IQNATGPKSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEP 488 (710)
Q Consensus 409 i~n~~G~~~~lf~p~~~fe~lvk~~i~~l~~Psl~c~~~V~~eL~~i~~~~~~~~l~rfp~L~~~i~~vv~~~l~e~~~~ 488 (710)
++|++|+++|+|+|+.+||.||++||++|++|+++|++.|++++.+++..++.++|.|||+|++++.+++.++++++..+
T Consensus 412 ~~~~~g~~~~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~~~f~rfp~L~~~~~~~i~~~~~~~~~~ 491 (608)
T 3szr_A 412 ENQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQERE 491 (608)
T ss_dssp HHHCCSCSSSCSSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHhhhhcCCCCCcccCCCCCCCCCCCCcccchhhhHhHhhhcccccc
Q 005171 489 SETMIGHIIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMA 568 (710)
Q Consensus 489 a~~~v~~li~~E~~yInT~hpdF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (710)
|+++|.++|+||+.| +|++|+|. .
T Consensus 492 a~~~i~~li~mE~~~-~~~d~~~~----------------~--------------------------------------- 515 (608)
T 3szr_A 492 GEKLIRLHFQMEQIV-YGAFQSSS----------------A--------------------------------------- 515 (608)
T ss_dssp HHHHHHHHHHHHHHC-CCC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhcc-ccCCcccc----------------C---------------------------------------
Confidence 999999999999976 56665443 0
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCccchhhHHhhhhcCCCCcccCCCCCCCh
Q 005171 569 DQGVRPTVEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSE 648 (710)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~ 648 (710)
+ . .+.
T Consensus 516 ------------------------~---------------~------------------------------------~~~ 520 (608)
T 3szr_A 516 ------------------------T---------------D------------------------------------SSM 520 (608)
T ss_dssp ------------------------------------------------------------------------------CT
T ss_pred ------------------------C---------------C------------------------------------ccH
Confidence 0 0 011
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcc------cccCCCccchhhhccC
Q 005171 649 QENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVSGTINGIL------LLNKPSPSFMLCESYK 709 (710)
Q Consensus 649 rE~~e~e~Ir~LI~SYF~IVRK~I~D~VPKAIMhfLVN~~k~~l~------~~~~~~~~~~~~~~~~ 709 (710)
+| |+.+|+|||+||+|+|.|+|||||||||||++++.|| ||+..++..||+|++.
T Consensus 521 ~e------i~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~~~~~~~~ll~E~~~ 581 (608)
T 3szr_A 521 EE------IFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSD 581 (608)
T ss_dssp TH------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCHHHHHHHTCCCHH
T ss_pred HH------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhCCCHH
Confidence 22 8999999999999999999999999999999999999 9999999999999974
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=5.7e-49 Score=428.50 Aligned_cols=319 Identities=47% Similarity=0.765 Sum_probs=288.2
Q ss_pred CcchHHHHHHHHHHHHHhCCCC--------CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccC
Q 005171 22 GGSVIPLVNKLQDIFAQLGSQS--------TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTK 93 (710)
Q Consensus 22 ~~~l~~~~~kl~d~~~~~g~~~--------~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~ 93 (710)
|++|++++|+|++++..+|... .+++|+|+|||++|||||||||+|+|.+|+|++.++|||+|+++++...+
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred ChhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC
Confidence 6889999999999999988531 26899999999999999999999999999999999999999999998765
Q ss_pred C-CccceeeecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHH
Q 005171 94 T-DEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEA 172 (710)
Q Consensus 94 ~-~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~ 172 (710)
. ...|+.+.+.++..+.+|++++.++..++.+..|.+.+|+..++.+++++|..++++||||||+.+....+|+.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~ 160 (360)
T 3t34_A 81 DGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVK 160 (360)
T ss_dssp SCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHH
T ss_pred CcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHH
Confidence 4 367888888889999999999999999999999999999999999999999999999999999999888888989999
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceEEE
Q 005171 173 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGV 252 (710)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V 252 (710)
.+..++..|+.+++++||+|.+++.+..+++++.+++.+++.+.|+|+|+||+|++++++...+++.+...++++||++|
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 240 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEE
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEE
Confidence 99999999999999999999999999888898999999999999999999999999988888888888889999999999
Q ss_pred EcCChhhhhhcccHHHHHHHHHHhccCCCccccccccCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 005171 253 VNRSQEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASY 332 (710)
Q Consensus 253 ~nrs~~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~l 332 (710)
+++++++++...++.++...|..||.++|+|+.+..++|+++|+++|+++|.+||+++||.++.+|+.++.+++++|++|
T Consensus 241 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~l 320 (360)
T 3t34_A 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRL 320 (360)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC----
T ss_pred EECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred CCCCCChh
Q 005171 333 GEITESKA 340 (710)
Q Consensus 333 g~~~~~~~ 340 (710)
|+++++..
T Consensus 321 g~~~~~~~ 328 (360)
T 3t34_A 321 GKPIAHGT 328 (360)
T ss_dssp --------
T ss_pred CCCCCCCH
Confidence 99987643
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=2.4e-47 Score=414.66 Aligned_cols=337 Identities=57% Similarity=0.909 Sum_probs=312.9
Q ss_pred CCcchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCcccee
Q 005171 21 LGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGE 100 (710)
Q Consensus 21 ~~~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~ 100 (710)
-|++|++++|+|+|.++.+|....+++|+|+|||.+|||||||||+|+|.+|+|++.++||++|.++++.+.+ .+|++
T Consensus 5 ~~~~l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~--~~~~~ 82 (353)
T 2x2e_A 5 SMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNAT--TEYAE 82 (353)
T ss_dssp -CCSCHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECS--SCEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCC--cccee
Confidence 4788999999999999999988889999999999999999999999999999999999999999999888764 58999
Q ss_pred eecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHH
Q 005171 101 FLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMS 180 (710)
Q Consensus 101 ~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~ 180 (710)
+.+.+|+.+++++++..+++.++.+..|.+.+++..++.+++++|+..+++||||||+.+.+.++|+.++.+.+++++..
T Consensus 83 ~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~ 162 (353)
T 2x2e_A 83 FLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQ 162 (353)
T ss_dssp ETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHH
T ss_pred eeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHH
Confidence 99999999999999999999999999898899999999999999999999999999999998889999998899999999
Q ss_pred HhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceEEEEcCChhhh
Q 005171 181 YIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDI 260 (710)
Q Consensus 181 yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di 260 (710)
|+.+++++||+|++++.++.+++++.+++.+++.+.|+|+|+||+|+++++++..+++.++..++++||+.|.++|+.+.
T Consensus 163 ~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~ 242 (353)
T 2x2e_A 163 FVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDI 242 (353)
T ss_dssp HHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHH
T ss_pred HHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccc
Confidence 99999999999999999999999878999999999999999999999988776677888888889999999999999998
Q ss_pred hhcccHHHHHHHHHHhccCCCccccccccCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 005171 261 MFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASYGEITESKA 340 (710)
Q Consensus 261 ~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~~~~~ 340 (710)
.....+.+++..|..||..++.|+....++|+..|.+.|++.|..|+++.||.++++|+.++..++.+|++||+.+++..
T Consensus 243 ~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~~~~~~~~ 322 (353)
T 2x2e_A 243 DGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDKH 322 (353)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred cccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCch
Confidence 87788999999999999999999999999999999999999999999999999999999999999999999997655432
Q ss_pred -h--hHHHHHHHHHHHHHHHHh
Q 005171 341 -G--QGALLLNILSKYSEAFSS 359 (710)
Q Consensus 341 -~--~~~~ll~~~~~f~~~~~~ 359 (710)
. ++.+|++++++|++.|+.
T Consensus 323 ~~~~~~~~~~~~~~~f~~~~~~ 344 (353)
T 2x2e_A 323 GTDSRVDEMLRMYHALKEALSI 344 (353)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 2 348999999999999964
No 5
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=2.1e-39 Score=345.33 Aligned_cols=309 Identities=59% Similarity=0.988 Sum_probs=249.4
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccC------CCc
Q 005171 23 GSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTK------TDE 96 (710)
Q Consensus 23 ~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~------~~~ 96 (710)
++|++++|+|+|+++.+|.. .+++|+|+|||.+|||||||||+|+|.+++|++.++||++|+++++...+ ...
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~-~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~ 79 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSD-PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQ 79 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSC-TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCC
T ss_pred CchHHHHHHHHHHHHHcCCC-CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchh
Confidence 47999999999999999987 78999999999999999999999999999999999999999988877653 246
Q ss_pred cceeeecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHH
Q 005171 97 EYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRT 176 (710)
Q Consensus 97 ~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~ 176 (710)
.|+.+.+.+++.+.+++++.+++..++.+..|.+.+++..++.+++++|...+++||||||+.+.+..+++.++.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~ 159 (315)
T 1jwy_B 80 EWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRR 159 (315)
T ss_dssp CEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHH
T ss_pred hhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHH
Confidence 79999999999999999999999999999888889999999999999999999999999999876666666777788999
Q ss_pred HHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceEEEEcCC
Q 005171 177 MIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRS 256 (710)
Q Consensus 177 lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs 256 (710)
++..|+..++++|++|.+++.++...+...+++.+++.+.++++|+||+|+.++.....+.+.+...+++++|+.|.+.+
T Consensus 160 ~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 239 (315)
T 1jwy_B 160 MVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRS 239 (315)
T ss_dssp HHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCC
T ss_pred HHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCC
Confidence 99999999998888887777777766667888999988999999999999997766556677766667778999999999
Q ss_pred hhhhhhcccHHHHHHHHHHhccCCCccccccccCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 005171 257 QEDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSALVSVAKEHASY 332 (710)
Q Consensus 257 ~~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~l 332 (710)
...++....+.+.+..+.+||..+++|..+..+.|+..|...|.+.+..|+++.+|.++.+++..+.+++++|++|
T Consensus 240 a~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~l~~~ 315 (315)
T 1jwy_B 240 QEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGELSTY 315 (315)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred hhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Confidence 9988778889999999999999998898888899999999999999999999999999999999999999999875
No 6
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=3.9e-37 Score=325.03 Aligned_cols=299 Identities=61% Similarity=0.990 Sum_probs=270.0
Q ss_pred CcchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceee
Q 005171 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEF 101 (710)
Q Consensus 22 ~~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~ 101 (710)
|+++++++++|+|.++.+|.....++|+|+|||.+|||||||+|+|+|.+++|++.++||++|+++++.+.. ..|+++
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~--~~~~~~ 78 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST--TEYAEF 78 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECS--SCEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCC--cccchh
Confidence 678999999999999999988788999999999999999999999999999999999999999999887764 478899
Q ss_pred ecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHH
Q 005171 102 LHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSY 181 (710)
Q Consensus 102 ~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~y 181 (710)
.+..|..+++++.+...+...+.+..|.+.+++...+.+++++|...+++||||||+.+...++++.++...+..++..|
T Consensus 79 ~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 158 (299)
T 2aka_B 79 LHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQF 158 (299)
T ss_dssp TTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHH
T ss_pred hhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHH
Confidence 88889889999999999988888888888899999999999999888999999999998776677778888899999999
Q ss_pred hcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceEEEEcCChhhhh
Q 005171 182 IKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIM 261 (710)
Q Consensus 182 i~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~ 261 (710)
+..++++||+|++++.++..++...+++.+++.+.++++|+||+|+.+++....+.+.+....++.||+.+.+.|+.+..
T Consensus 159 ~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~ 238 (299)
T 2aka_B 159 VTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDID 238 (299)
T ss_dssp HTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTT
T ss_pred HcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhcc
Confidence 99999999999999999888887789999999999999999999999876656667777666777899999999998776
Q ss_pred hcccHHHHHHHHHHhccCCCccccccccCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 005171 262 FNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSAL 322 (710)
Q Consensus 262 ~~~s~~~a~~~E~~fF~~~~~~~~~~~~~Gi~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l 322 (710)
.-..+.+++..|..||...+.|.....++|+..|.+.|.+.+..|+++.||.++++|+.++
T Consensus 239 gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~~ 299 (299)
T 2aka_B 239 GKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299 (299)
T ss_dssp SCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhC
Confidence 6677888988999999888889999999999999999999999999999999999988753
No 7
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=320.43 Aligned_cols=258 Identities=17% Similarity=0.200 Sum_probs=188.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCCccccccccccccchHHHHHHHHHHHhhhhcCCCCCCch----HHHHHHHHhhcCC
Q 005171 340 AGQGALLLNILSKYSEAFSSMVEGKNEEMSTSELSGGARIHYIFQSIFVKSLEEVDPCEDLTD----DDIRTAIQNATGP 415 (710)
Q Consensus 340 ~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~~l~ggari~~~f~~~f~~~l~~~~~~~~l~~----~dI~~~i~n~~G~ 415 (710)
.++..+|+..++.|.+++.++++|+... ..|++||...+.+.|.+|...++....... .+|.+..++++|+
T Consensus 4 ~e~~~FLidkI~~F~~di~~l~~Gee~~-----~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGr 78 (271)
T 3ljb_A 4 NEKMFFLIDKVNAFNQDITALMQGEETV-----GEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGR 78 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCceecc-----cCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCc
Confidence 4578899999999999999999998752 347889999999999999876655433333 6677778899999
Q ss_pred CCCCCCCChhHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 005171 416 KSALFVPDVPFEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREGLEPSETMIGH 495 (710)
Q Consensus 416 ~~~lf~p~~~fe~lvk~~i~~l~~Psl~c~~~V~~eL~~i~~~~~~~~l~rfp~L~~~i~~vv~~~l~e~~~~a~~~v~~ 495 (710)
++|+|+|+.+||.||++||++|++||++|++.|+++|.+++.+++.++|.|||+|++.+.++|.++++++..+|++||++
T Consensus 79 ELPgFv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~~ 158 (271)
T 3ljb_A 79 ELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRL 158 (271)
T ss_dssp ----CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCCCCchHHHHHHHHhhhhcCCCCCcccCCCCCCCCCCCCcccchhhhHhHhhhccccccCCCCCCc
Q 005171 496 IIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGVRPT 575 (710)
Q Consensus 496 li~~E~~yInT~hpdF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (710)
+|+||+ +++|+|+.|.++.+.+. ... ..+ +
T Consensus 159 ~~~mE~-~vytqD~~Y~~~l~~~r-------~~~-----------~~~------~------------------------- 188 (271)
T 3ljb_A 159 HFQMEQ-IVYCQDQVYRGALQKVR-------EKE-----------LEE------E------------------------- 188 (271)
T ss_dssp HHHHHT-SCC----------------------------------------------------------------------
T ss_pred HHHHhc-ccccCCHHHHHHHHHHH-------HHH-----------hcc------c-------------------------
Confidence 999999 89999999987543211 000 000 0
Q ss_pred ccccccCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCccchhhHHhhhhcCCCCcccCCCCCCChhHHHHHH
Q 005171 576 VEVEKVAPAGNTSGSSWGISSIFGGSDNRVPAGKESVTNKPFSEPVQNVEHAFAMIHLREPPTILRPSESHSEQENVEIA 655 (710)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~rE~~e~e 655 (710)
...+ ..+.+ |... +....-.+.
T Consensus 189 --~~~~------~~~~~-----~~~~---------------------------------------------~~~~~~~~~ 210 (271)
T 3ljb_A 189 --KKKK------SWDFG-----AFQS---------------------------------------------SSATDSSME 210 (271)
T ss_dssp -----------------------------------------------------------------------------CHH
T ss_pred --cccc------ccccc-----cccC---------------------------------------------CCCccchHH
Confidence 0000 00000 0000 000002455
Q ss_pred HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHhhhhhcc------cccCCCccchhhhccCC
Q 005171 656 VTKLLLRSYYDIVRKNIEDSIPKAVMHFLVSGTINGIL------LLNKPSPSFMLCESYKT 710 (710)
Q Consensus 656 ~Ir~LI~SYF~IVRK~I~D~VPKAIMhfLVN~~k~~l~------~~~~~~~~~~~~~~~~~ 710 (710)
-|..++.|||+||+|+++|+|||+||+|||+.+++.|| ||+..++..||.|++.+
T Consensus 211 Ei~~~l~sYf~i~~~rl~d~IP~~I~~~ll~~~~~~lQ~~ml~~l~~~~~~~~LL~E~~d~ 271 (271)
T 3ljb_A 211 EIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDT 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSCGGGHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHhcCCCCC
Confidence 67789999999999999999999999999999999999 99999999999999864
No 8
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.78 E-value=4.6e-18 Score=199.59 Aligned_cols=190 Identities=20% Similarity=0.239 Sum_probs=124.5
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeee
Q 005171 23 GSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFL 102 (710)
Q Consensus 23 ~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~ 102 (710)
..+...+++|.+.+..+. -+.++|+|+|.+|+|||||||+|+|.+++|++..+||++|+.+.+..... ....
T Consensus 49 ~~l~~~l~~L~~~~~~l~----~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~----~t~~ 120 (695)
T 2j69_A 49 LSLERDIEDITIASKNLQ----QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKK----VTIH 120 (695)
T ss_dssp CCCHHHHHHHHHHHHHHH----HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCE----EEEE
T ss_pred hHHHHHHHHHHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCe----EEEE
Confidence 344555556655544442 23568999999999999999999999999999999999999997653211 1111
Q ss_pred cCCCc--cccChhHHHHHHH---HhhhhhcCCCCcccccceEEEEecCCc---cceEEEeCCCCCcCCCCCCchHHHHHH
Q 005171 103 HLPGK--RFYDFSEIRREIQ---AQTDKEAGGNKGVSDKQIRLKIFSPHV---LDITLVDLPGITKVPVGEQPADIEARI 174 (710)
Q Consensus 103 ~~~g~--~~~d~~~i~~~i~---~~t~~~~g~~~~~s~~~i~l~i~~p~~---~~LtLVDtPGl~~~~~~~q~~di~~~i 174 (710)
..+|. ...++..+...+. ...................++++.|.. .+++||||||+.... ..
T Consensus 121 ~~~g~~~~~~~~~~i~~~~~i~~~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~----------~~ 190 (695)
T 2j69_A 121 FNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE----------AR 190 (695)
T ss_dssp ESSSCCCCEEEHHHHHHHSCCCHHHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH----------TC
T ss_pred EcCCCcccccChhhhhhhhcCCHHHHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh----------hH
Confidence 11222 1222222221110 001111222334455677888888865 479999999987431 23
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 175 RTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 175 ~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
..++..|+..++ +||+|++++...+..+...+.+.+...+.++++|+||+|+.+..
T Consensus 191 ~~~~~~~i~~aD-~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 191 NELSLGYVNNCH-AILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp HHHHTHHHHSSS-EEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGG
T ss_pred HHHHHHHHHhCC-EEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECccccccc
Confidence 567788999998 77777888877766664344456666688999999999998653
No 9
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.47 E-value=4.7e-13 Score=133.94 Aligned_cols=129 Identities=22% Similarity=0.275 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCC-ccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFL-PRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~l-P~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (710)
-..|+|+|+|..|+|||||+|+|+|..++ ..+..+ +|+.....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~----------------------------------- 71 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYF----------------------------------- 71 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEE-----------------------------------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEE-----------------------------------
Confidence 46789999999999999999999998732 222211 22221111
Q ss_pred hhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCe--EEEEEecCCCccc
Q 005171 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSC--LILAVTPANSDLA 200 (710)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~--iIL~V~~a~~d~~ 200 (710)
.+.......++||||||+...... ....+.+..++..|+...+. ++++|+++...+.
T Consensus 72 ------------------~~~~~~~~~~~l~DtpG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~ 130 (223)
T 4dhe_A 72 ------------------SVGPAAEPVAHLVDLPGYGYAEVP---GAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLT 130 (223)
T ss_dssp ------------------EESCTTSCSEEEEECCCCCSSCCC---STHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC
T ss_pred ------------------EecCCCCCcEEEEcCCCCCcccCC---hhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCC
Confidence 111111246999999998765322 23356777888888876332 5777777776555
Q ss_pred chHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 201 NSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 201 ~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
..+ ..+.+.+...+.++|+|+||+|+.+.
T Consensus 131 ~~~-~~~~~~l~~~~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 131 ELD-RRMIEWFAPTGKPIHSLLTKCDKLTR 159 (223)
T ss_dssp HHH-HHHHHHHGGGCCCEEEEEECGGGSCH
T ss_pred HHH-HHHHHHHHhcCCCEEEEEeccccCCh
Confidence 443 45556565567899999999999864
No 10
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.44 E-value=1.6e-12 Score=126.45 Aligned_cols=125 Identities=22% Similarity=0.222 Sum_probs=80.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCcc-ccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC-TRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~-Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (710)
-..|+|+|+|..|+|||||+|+|++..+......+. |+.....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~------------------------------------ 64 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFY------------------------------------ 64 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEE------------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEE------------------------------------
Confidence 457899999999999999999999987433222211 1111000
Q ss_pred hhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCC--eEEEEEecCCCcccc
Q 005171 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPS--CLILAVTPANSDLAN 201 (710)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~--~iIL~V~~a~~d~~~ 201 (710)
.. ...+++|||||+..... +......++.+...|++..+ .++++|+++......
T Consensus 65 -----------------~~----~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~ 120 (195)
T 3pqc_A 65 -----------------LV----NSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQD 120 (195)
T ss_dssp -----------------EE----TTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH
T ss_pred -----------------EE----CCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCH
Confidence 00 12588999999765421 23334567778888887652 356677777655444
Q ss_pred hHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 202 SDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 202 ~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+ ..+.+.+...+.++++|+||+|+.++
T Consensus 121 ~~-~~~~~~~~~~~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 121 SD-LMMVEWMKSLNIPFTIVLTKMDKVKM 148 (195)
T ss_dssp HH-HHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred HH-HHHHHHHHHcCCCEEEEEEChhcCCh
Confidence 43 34444444447899999999999854
No 11
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.43 E-value=6.7e-13 Score=140.56 Aligned_cols=125 Identities=22% Similarity=0.222 Sum_probs=83.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
....|+|||.+|+|||||+|+|+|..+..++..+ +||..+...+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~----------------------------------- 50 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL----------------------------------- 50 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE-----------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEE-----------------------------------
Confidence 3457999999999999999999999875444332 3332211100
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
......++||||||+.+.. ..+.+.+...+..|++.++ ++|+|+++...+...+
T Consensus 51 -------------------~~~~~~l~l~DTpG~~~~~-----~~l~~~~~~~~~~~l~~ad-~il~VvD~~~~~~~~~- 104 (301)
T 1wf3_A 51 -------------------TEGRRQIVFVDTPGLHKPM-----DALGEFMDQEVYEALADVN-AVVWVVDLRHPPTPED- 104 (301)
T ss_dssp -------------------EETTEEEEEEECCCCCCCC-----SHHHHHHHHHHHHHTSSCS-EEEEEEETTSCCCHHH-
T ss_pred -------------------EeCCcEEEEecCccccchh-----hHHHHHHHHHHHHHHhcCC-EEEEEEECCCCCChHH-
Confidence 0012368999999987532 3556678888899999998 5566666665544433
Q ss_pred HHHHHhhCCC--CCcEEEeeccccccCcc
Q 005171 205 LQIAGIADPD--GYRTIGIITKLDIMDRG 231 (710)
Q Consensus 205 l~la~~~dp~--g~rtI~VlTK~Dl~~~~ 231 (710)
..+.+.+... +.++|+|+||+|+.+..
T Consensus 105 ~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~ 133 (301)
T 1wf3_A 105 ELVARALKPLVGKVPILLVGNKLDAAKYP 133 (301)
T ss_dssp HHHHHHHGGGTTTSCEEEEEECGGGCSSH
T ss_pred HHHHHHHHhhcCCCCEEEEEECcccCCch
Confidence 2333333333 68999999999998653
No 12
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.42 E-value=2.7e-12 Score=136.28 Aligned_cols=125 Identities=22% Similarity=0.291 Sum_probs=85.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...|+++|.+|||||||+|+|+|..+..++..+ +|+..+...+
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~------------------------------------ 53 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVK------------------------------------ 53 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE------------------------------------
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEE------------------------------------
Confidence 346999999999999999999999875444332 3332211110
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
..+....++||||||+.+... ...+.+.+...+..|+..++ ++|+|+++.......+ .
T Consensus 54 -----------------~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD-~il~VvD~~~~~~~~~-~ 111 (308)
T 3iev_A 54 -----------------NIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEAD-VILFMIDATEGWRPRD-E 111 (308)
T ss_dssp -----------------EETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCS-EEEEEEETTTBSCHHH-H
T ss_pred -----------------ecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCC-EEEEEEeCCCCCCchh-H
Confidence 011123689999999976431 13566778888899999998 5556666665554444 3
Q ss_pred HH-HHhhCCCCCcEEEeeccccccC
Q 005171 206 QI-AGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~l-a~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.+ ++.+...+.++++|+||+|+.+
T Consensus 112 ~~~~~~l~~~~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 112 EIYQNFIKPLNKPVIVVINKIDKIG 136 (308)
T ss_dssp HHHHHHTGGGCCCEEEEEECGGGSS
T ss_pred HHHHHHHHhcCCCEEEEEECccCCC
Confidence 33 5666556789999999999984
No 13
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.41 E-value=3e-12 Score=125.00 Aligned_cols=124 Identities=25% Similarity=0.310 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCC-c-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-I-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (710)
...++|+|+|..|+|||||+|+|++..+.+.... + +|+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 62 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTL-------------------------------------- 62 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCE--------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeE--------------------------------------
Confidence 3578999999999999999999999875332111 0 11110
Q ss_pred hhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCC---CeEEEEEecCCCcc
Q 005171 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQP---SCLILAVTPANSDL 199 (710)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~---~~iIL~V~~a~~d~ 199 (710)
....+ ...+.||||||+.... .+.+..+.+..+...|+... + ++++|.++....
T Consensus 63 ---------------~~~~~----~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d~~~~~ 119 (195)
T 1svi_A 63 ---------------NFYII----NDELHFVDVPGYGFAK---VSKSEREAWGRMIETYITTREELK-AVVQIVDLRHAP 119 (195)
T ss_dssp ---------------EEEEE----TTTEEEEECCCBCCCS---SCHHHHHHHHHHHHHHHHHCTTEE-EEEEEEETTSCC
T ss_pred ---------------EEEEE----CCcEEEEECCCCCccc---cCHHHHHHHHHHHHHHHhhhhcCC-EEEEEEECCCCC
Confidence 00111 1258999999976542 23444567788888888866 5 566666766555
Q ss_pred cchHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 200 ANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 200 ~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
...+ ..+.+.+...+.++++|+||+|+.+.
T Consensus 120 ~~~~-~~~~~~~~~~~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 120 SNDD-VQMYEFLKYYGIPVIVIATKADKIPK 149 (195)
T ss_dssp CHHH-HHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred CHHH-HHHHHHHHHcCCCEEEEEECcccCCh
Confidence 4443 34444444467899999999999864
No 14
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.38 E-value=4.8e-12 Score=131.89 Aligned_cols=136 Identities=21% Similarity=0.251 Sum_probs=79.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+|||.+|+|||||+|+|+|.+.++.+...++... ..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~-----~~------------------------------------ 47 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI-----KK------------------------------------ 47 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC-------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc-----CC------------------------------------
Confidence 4699999999999999999999887655432111100 00
Q ss_pred CCCCcccccceEEEEecCC-ccceEEEeCCCCCcCCCC-CCchHHHHHHHHHHHHHhcC-------------CCeEEEEE
Q 005171 128 GGNKGVSDKQIRLKIFSPH-VLDITLVDLPGITKVPVG-EQPADIEARIRTMIMSYIKQ-------------PSCLILAV 192 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~-~~~LtLVDtPGl~~~~~~-~q~~di~~~i~~lv~~yi~~-------------~~~iIL~V 192 (710)
++........+.... ...++||||||+.+.... +.-..+...+.+....|+.. .++++++|
T Consensus 48 ----t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i 123 (274)
T 3t5d_A 48 ----TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFI 123 (274)
T ss_dssp -----CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEE
T ss_pred ----ceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEe
Confidence 000111111111111 136999999999654221 21223333333444556654 56677777
Q ss_pred ecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 193 TPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 193 ~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.++...+...+ ..+++.+.. +.++|+|+||+|++.+
T Consensus 124 ~~~~~~~~~~d-~~~l~~l~~-~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 124 APSGHGLKPLD-IEFMKRLHE-KVNIIPLIAKADTLTP 159 (274)
T ss_dssp CSCCSSCCHHH-HHHHHHHTT-TSCEEEEESSGGGSCH
T ss_pred cCCCCCCCHHH-HHHHHHHhc-cCCEEEEEeccCCCCH
Confidence 77776666655 567777776 7999999999999854
No 15
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.37 E-value=1.5e-12 Score=148.74 Aligned_cols=165 Identities=16% Similarity=0.233 Sum_probs=98.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCC--ccCCCccccceEEEEecccCCCccceeeecCCCccc-cChhHHHHHHHHh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL--PRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF-YDFSEIRREIQAQ 122 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~l--P~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~-~d~~~i~~~i~~~ 122 (710)
..|.|+|+|.+|+|||||||+|+|..+. +++..++|.+.+.+...... .. .+|... .+...-...
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~------~i--~~g~~l~~~~~~~~~~---- 131 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETE------GT--VPGNALVVDPEKPFRK---- 131 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSS------EE--ECCC----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcc------cc--cCCceeeecCcccHHH----
Confidence 5689999999999999999999999875 67777888666555432110 00 011110 000000000
Q ss_pred hhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHH--HHHHHHHHhcCCCeEEEEEecCCC-cc
Q 005171 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEAR--IRTMIMSYIKQPSCLILAVTPANS-DL 199 (710)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~--i~~lv~~yi~~~~~iIL~V~~a~~-d~ 199 (710)
+...+..+....+++.+.++....++||||||+.+... ..+... +..++..|+..++ +||+|+++.. +.
T Consensus 132 ---L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~----~~~~~~~~f~~~~~~~l~~aD-~il~VvDa~~~~~ 203 (550)
T 2qpt_A 132 ---LNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAK----QRVSRGYDFPAVLRWFAERVD-LIILLFDAHKLEI 203 (550)
T ss_dssp ---------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCS-EEEEEEETTSCCC
T ss_pred ---HhhhcccccccceEEeccccccCCEEEEECcCCCCcch----hHHHHHhhHHHHHHHHHHhCC-EEEEEEeCCcCCC
Confidence 00112233444556666555446899999999975311 111111 5567788899898 4555566654 34
Q ss_pred cchHHHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 200 ANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 200 ~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
.. ....+++.+...+.++++|+||+|++++.
T Consensus 204 ~~-~~~~~l~~l~~~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 204 SD-EFSEAIGALRGHEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp CH-HHHHHHHHTTTCGGGEEEEEECGGGSCHH
T ss_pred CH-HHHHHHHHHHhcCCCEEEEEECCCccCHH
Confidence 33 33567777777788999999999998643
No 16
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.32 E-value=5.1e-12 Score=128.64 Aligned_cols=128 Identities=21% Similarity=0.240 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCC--ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND--ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g--~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (710)
-..++|+|||.+|+|||||+|+|+|..+...+.. .+|+.+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~---------------------------------- 72 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS---------------------------------- 72 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE----------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE----------------------------------
Confidence 3567899999999999999999999987544332 2333321111
Q ss_pred hhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 005171 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (710)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (710)
+.+. ...++||||||+.+....+ .++.+.+...+..+...+++ +|+|++++ .+...
T Consensus 73 -----------------~~~~---~~~i~liDTpG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~l~v~d~~-~~~~~ 128 (239)
T 3lxx_A 73 -----------------SSWK---ETELVVVDTPGIFDTEVPN--AETSKEIIRCILLTSPGPHA-LLLVVPLG-RYTEE 128 (239)
T ss_dssp -----------------EEET---TEEEEEEECCSCC-----C--HHHHHHHHHHHHHTTTCCSE-EEEEEETT-CCSSH
T ss_pred -----------------EEeC---CceEEEEECCCccCCCCCH--HHHHHHHHHHHHhcCCCCcE-EEEEeeCC-CCCHH
Confidence 0110 1358999999998654322 44555677777777778884 55555554 23332
Q ss_pred H--HHHHHHh-hCC-CCCcEEEeeccccccCc
Q 005171 203 D--ALQIAGI-ADP-DGYRTIGIITKLDIMDR 230 (710)
Q Consensus 203 ~--~l~la~~-~dp-~g~rtI~VlTK~Dl~~~ 230 (710)
+ .+..+.. +.. ...++++|+||+|+.+.
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 129 EHKATEKILKMFGERARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred HHHHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence 2 2222221 111 23589999999999864
No 17
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.32 E-value=1.7e-11 Score=137.22 Aligned_cols=203 Identities=17% Similarity=0.268 Sum_probs=116.1
Q ss_pred CCCCcchHHHHHHHHHHHHHhCCC-CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCc
Q 005171 19 VPLGGSVIPLVNKLQDIFAQLGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDE 96 (710)
Q Consensus 19 ~~~~~~l~~~~~kl~d~~~~~g~~-~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~ 96 (710)
+.-+..+-.+++.+.+.+...... ..-..++|+++|.+++|||||+|+|+|.+...++..+ +|+..
T Consensus 166 A~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~------------ 233 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA------------ 233 (456)
T ss_dssp TTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CT------------
T ss_pred cccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEE------------
Confidence 344566777777776544322211 2235678999999999999999999988643322221 11110
Q ss_pred cceeeecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHH
Q 005171 97 EYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRT 176 (710)
Q Consensus 97 ~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~ 176 (710)
.. ..+.+.+ ..++||||||+.+....+... + .+..
T Consensus 234 ~~---------------------------------------~~~~~~~---~~~~l~DT~G~~~~~~~~~~~--e-~~~~ 268 (456)
T 4dcu_A 234 VD---------------------------------------TSFTYNQ---QEFVIVDTAGMRKKGKVYETT--E-KYSV 268 (456)
T ss_dssp TS---------------------------------------EEEEETT---EEEEETTGGGTTTBTTBCCCC--S-HHHH
T ss_pred EE---------------------------------------EEEEECC---ceEEEEECCCCCcCcccchHH--H-HHHH
Confidence 00 1111111 268999999987543211111 1 2222
Q ss_pred H-HHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceEEEEcC
Q 005171 177 M-IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNR 255 (710)
Q Consensus 177 l-v~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nr 255 (710)
+ ...|++.++ ++|+|+++...+..++ ..++..+...+.++|+|+||+|+.+......+
T Consensus 269 ~~~~~~~~~ad-~~llviD~~~~~~~~~-~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~------------------- 327 (456)
T 4dcu_A 269 LRALKAIDRSE-VVAVVLDGEEGIIEQD-KRIAGYAHEAGKAVVIVVNKWDAVDKDESTMK------------------- 327 (456)
T ss_dssp HHHHHHHHHCS-EEEEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGSCCCSSHHH-------------------
T ss_pred HHHHHHHhhCC-EEEEEEeCCCCcCHHH-HHHHHHHHHcCCCEEEEEEChhcCCCchHHHH-------------------
Confidence 2 346888888 5666677776666555 45565555578999999999999864322110
Q ss_pred ChhhhhhcccHHHHHHHHHHhccCCCc-cccccccCCchhHHHHHHHHHHHHHH
Q 005171 256 SQEDIMFNRSIKDALVAEEKFFRSRPV-YNGLADRCGVPQLAKKLNQILVQHIK 308 (710)
Q Consensus 256 s~~di~~~~s~~~a~~~E~~fF~~~~~-~~~~~~~~Gi~~L~~~L~~~L~~~i~ 308 (710)
.+.+.......+....|. ..++..+.|+..|...|.+.+.++-+
T Consensus 328 ---------~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 328 ---------EFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp ---------HHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred ---------HHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 011111111122222222 24566789999999988887765543
No 18
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.29 E-value=4.5e-11 Score=123.13 Aligned_cols=127 Identities=18% Similarity=0.135 Sum_probs=78.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc--cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~--~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (710)
....+|+|+|.+|||||||+|+|+|...++.+..+ +|+......
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~---------------------------------- 65 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQ---------------------------------- 65 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEE----------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEE----------------------------------
Confidence 34578999999999999999999998865554432 333221110
Q ss_pred hhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 005171 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (710)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (710)
+.+ ....+.||||||+.+.... .......+...+..+++.++++|+ |+++.. +...
T Consensus 66 -----------------~~~---~~~~i~iiDTpG~~~~~~~--~~~~~~~i~~~~~~~~~~~d~il~-V~d~~~-~~~~ 121 (260)
T 2xtp_A 66 -----------------GSW---GNREIVIIDTPDMFSWKDH--CEALYKEVQRCYLLSAPGPHVLLL-VTQLGR-YTSQ 121 (260)
T ss_dssp -----------------EEE---TTEEEEEEECCGGGGSSCC--CHHHHHHHHHHHHHHTTCCSEEEE-EEETTC-CCHH
T ss_pred -----------------EEe---CCCEEEEEECcCCCCCCCC--HHHHHHHHHHHHHhcCCCCcEEEE-EEeCCC-CCHH
Confidence 000 0135899999999765322 223333455666778899985554 555543 3332
Q ss_pred H--HHHHHHhhCCC--CCcEEEeec-cccccC
Q 005171 203 D--ALQIAGIADPD--GYRTIGIIT-KLDIMD 229 (710)
Q Consensus 203 ~--~l~la~~~dp~--g~rtI~VlT-K~Dl~~ 229 (710)
+ .+..+.++.+. +.++|+|+| |+|+.+
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 122 DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 2 23444443221 467888888 999984
No 19
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.28 E-value=2.1e-11 Score=135.68 Aligned_cols=203 Identities=17% Similarity=0.262 Sum_probs=114.7
Q ss_pred CcCCCCcchHHHHHHHHHHHHHhCCC-CCCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEecccCC
Q 005171 17 SAVPLGGSVIPLVNKLQDIFAQLGSQ-STIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKT 94 (710)
Q Consensus 17 ~~~~~~~~l~~~~~kl~d~~~~~g~~-~~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~~~~~ 94 (710)
.++.-+..+-++++.+.+.+...... ..-..++|+|||.+|+|||||+|+|+|..+..++.- .+|+-.
T Consensus 144 iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~---------- 213 (436)
T 2hjg_A 144 ISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA---------- 213 (436)
T ss_dssp CBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-------------------
T ss_pred EeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeee----------
Confidence 34445677777877776654321110 122457999999999999999999999875322221 111111
Q ss_pred CccceeeecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHH
Q 005171 95 DEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARI 174 (710)
Q Consensus 95 ~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i 174 (710)
... .+.+.+ ..++||||||+.+..... ..++ .+
T Consensus 214 --~~~---------------------------------------~~~~~~---~~~~l~DT~G~~~~~~~~--~~~e-~~ 246 (436)
T 2hjg_A 214 --VDT---------------------------------------SFTYNQ---QEFVIVDTAGMRKKGKVY--ETTE-KY 246 (436)
T ss_dssp --CCE---------------------------------------EEEETT---EEEEETTHHHHTCBTTBC--CCCS-HH
T ss_pred --eEE---------------------------------------EEEECC---eEEEEEECCCcCcCcccc--chHH-HH
Confidence 000 111111 248999999985443211 1111 22
Q ss_pred HHH-HHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceEEEE
Q 005171 175 RTM-IMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVV 253 (710)
Q Consensus 175 ~~l-v~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~ 253 (710)
..+ ...|++.++ ++++|.++......++ ..++..+...+.++|+|+||+|+.+......+
T Consensus 247 ~~~~~~~~~~~ad-~~llv~D~~~~~s~~~-~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~----------------- 307 (436)
T 2hjg_A 247 SVLRALKAIDRSE-VVAVVLDGEEGIIEQD-KRIAGYAHEAGKAVVIVVNKWDAVDKDESTMK----------------- 307 (436)
T ss_dssp HHHHHHHHHHHCS-EEEEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGSCCCTTHHH-----------------
T ss_pred HHHHHHHHHHhCC-EEEEEEcCCcCCcHHH-HHHHHHHHHcCCcEEEEEECccCCCcchHHHH-----------------
Confidence 222 336788888 5666667776665555 45666655568999999999999864321100
Q ss_pred cCChhhhhhcccHHHHHHHHHHhccCCCc-cccccccCCchhHHHHHHHHHHHH
Q 005171 254 NRSQEDIMFNRSIKDALVAEEKFFRSRPV-YNGLADRCGVPQLAKKLNQILVQH 306 (710)
Q Consensus 254 nrs~~di~~~~s~~~a~~~E~~fF~~~~~-~~~~~~~~Gi~~L~~~L~~~L~~~ 306 (710)
.+.+....+..+....|. +.+...+.|+..|...+.+.+.++
T Consensus 308 -----------~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 308 -----------EFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp -----------HHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHh
Confidence 011111222222222222 245667899999998888776543
No 20
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.28 E-value=1.3e-11 Score=137.35 Aligned_cols=123 Identities=20% Similarity=0.312 Sum_probs=75.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
+|.|++||.+|+|||||+|+|+|..+.-++.. | +++++..++.
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~-----~------g~T~d~~~~~-------------------------- 43 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDE-----E------GVTRDPVQDT-------------------------- 43 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC-------------------------CCSEEE--------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCceecCC-----C------CCccceeeEE--------------------------
Confidence 58999999999999999999999864212211 1 1111111111
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (710)
+++. ...+.||||||+.... ...+.+.++.++..|+++++ +||+|+++...++..+ ..
T Consensus 44 -------------~~~~---~~~~~l~DT~G~~~~~----~~~~~~~~~~~~~~~~~~ad-~il~V~D~~~~~~~~d-~~ 101 (439)
T 1mky_A 44 -------------VEWY---GKTFKLVDTCGVFDNP----QDIISQKMKEVTLNMIREAD-LVLFVVDGKRGITKED-ES 101 (439)
T ss_dssp -------------EEET---TEEEEEEECTTTTSSG----GGCCCHHHHHHHHHHHTTCS-EEEEEEETTTCCCHHH-HH
T ss_pred -------------EEEC---CeEEEEEECCCccccc----cchHHHHHHHHHHHHHHhCC-EEEEEEECCCCCCHHH-HH
Confidence 1111 1258999999986431 11234567888899999998 5666667766555444 23
Q ss_pred HHHhhCCCCCcEEEeecccccc
Q 005171 207 IAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 207 la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
+++.+...+.++++|+||+|+.
T Consensus 102 i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 102 LADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp HHHHHHHHTCCEEEEEESCCSH
T ss_pred HHHHHHHcCCCEEEEEeCCCCc
Confidence 4444433468999999999985
No 21
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.27 E-value=2.1e-11 Score=116.96 Aligned_cols=119 Identities=13% Similarity=0.236 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||+|+|++..+.+......+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 45 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADF----------------------------------------- 45 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSC-----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEE-----------------------------------------
Confidence 356899999999999999999999875322111100000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH-
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~- 204 (710)
....+.+.+.....+.||||||.. .++.+...|++.++++|+++ ++.....-...
T Consensus 46 ----------~~~~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~ 101 (182)
T 1ky3_A 46 ----------LTKEVTVDGDKVATMQVWDTAGQE-------------RFQSLGVAFYRGADCCVLVY-DVTNASSFENIK 101 (182)
T ss_dssp ----------EEEEECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEE-ETTCHHHHHTHH
T ss_pred ----------EEEEEEEcCCcEEEEEEEECCCCh-------------HhhhhhHHHhhcCCEEEEEE-ECCChHHHHHHH
Confidence 000111111122468999999932 34556677899998655554 44433221111
Q ss_pred --HHHHHhh----CCCCCcEEEeeccccccC
Q 005171 205 --LQIAGIA----DPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 --l~la~~~----dp~g~rtI~VlTK~Dl~~ 229 (710)
+..+... ...+.++++|+||+|+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 102 SWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp HHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred HHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 2222221 235689999999999964
No 22
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.27 E-value=1.6e-11 Score=115.46 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=72.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
+|+|+|+|..|+|||||+|+|++..+...+..+ +|+...
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 40 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLK---------------------------------------- 40 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCE----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecce----------------------------------------
Confidence 478999999999999999999988653222211 111100
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
...+.+. ...+.||||||...... ....+......|+..++++|+ |.++.......+ .
T Consensus 41 -----------~~~~~~~---~~~~~l~Dt~G~~~~~~------~~~~~~~~~~~~~~~~~~~i~-v~d~~~~~~~~~-~ 98 (161)
T 2dyk_A 41 -----------EGVVETD---RGRFLLVDTGGLWSGDK------WEKKIQEKVDRALEDAEVVLF-AVDGRAELTQAD-Y 98 (161)
T ss_dssp -----------EEEEEET---TEEEEEEECGGGCSSSS------CCHHHHHHHHHHTTTCSEEEE-EEESSSCCCHHH-H
T ss_pred -----------EEEEEeC---CceEEEEECCCCCCccc------hHHHHHHHHHHHHHhCCEEEE-EEECCCcccHhH-H
Confidence 0011111 12589999999865321 223566777789999985555 555554443332 2
Q ss_pred HHHHhhCCCCCcEEEeeccccccCc
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+.+.+...+.++++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 99 EVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp HHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred HHHHHHHhcCCCEEEEEECcccccc
Confidence 2222232246889999999999864
No 23
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.27 E-value=2.9e-11 Score=114.51 Aligned_cols=116 Identities=12% Similarity=0.083 Sum_probs=55.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|+|..+.+....+.|.+...+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------- 42 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI--------------------------------------- 42 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE---------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE---------------------------------------
Confidence 46899999999999999999998865333222111111000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (710)
.+. .....+.+|||||.. ..+.+...|++.++++|+++.. +....-.....
T Consensus 43 --------------~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i~v~d~-~~~~s~~~~~~ 93 (166)
T 3q72_A 43 --------------VVD-GEEASLMVYDIWEQD-------------GGRWLPGHCMAMGDAYVIVYSV-TDKGSFEKASE 93 (166)
T ss_dssp --------------EET-TEEEEEEEEECC----------------------------CCEEEEEEET-TCHHHHHHHHH
T ss_pred --------------EEC-CEEEEEEEEECCCCc-------------cchhhhhhhhhhCCEEEEEEEC-CCHHHHHHHHH
Confidence 000 111358999999943 3445666788889866655543 32221112112
Q ss_pred ----HHHhhCCCCCcEEEeeccccccCc
Q 005171 207 ----IAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 207 ----la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+.+.....+.++++|+||+|+.+.
T Consensus 94 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 94 LRVQLRRARQTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp HHHHHHHCC---CCCEEEEEECTTCCSS
T ss_pred HHHHHHHhcCCCCCCEEEEEeccccccc
Confidence 222223357899999999999754
No 24
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.27 E-value=1.2e-10 Score=117.28 Aligned_cols=126 Identities=14% Similarity=0.190 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
..++|+|+|..|+|||||+|+|++..+.+.....+|+....-
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~-------------------------------------- 69 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVG-------------------------------------- 69 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEE--------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeee--------------------------------------
Confidence 467899999999999999999999876322111112211000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA--NSD 203 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~--~~~ 203 (710)
.+. .....+.||||||..+.+..+. ..+. . ..+..|...++ ++++|.+++.... ...
T Consensus 70 -------------~~~---~~~~~~~l~DtpG~~~~~~~~~-~~~~--~-~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 128 (228)
T 2qu8_A 70 -------------HFD---HKLNKYQIIDTPGLLDRAFENR-NTIE--M-TTITALAHING-VILFIIDISEQCGLTIKE 128 (228)
T ss_dssp -------------EEE---ETTEEEEEEECTTTTTSCGGGC-CHHH--H-HHHHHHHTSSE-EEEEEEETTCTTSSCHHH
T ss_pred -------------eee---cCCCeEEEEECCCCcCcccchh-hhHH--H-HHHHHhhcccc-EEEEEEecccccCcchHH
Confidence 000 0113689999999865321111 0111 1 22234566666 4555556554322 223
Q ss_pred HHHHHHhhCCC--CCcEEEeeccccccCc
Q 005171 204 ALQIAGIADPD--GYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l~la~~~dp~--g~rtI~VlTK~Dl~~~ 230 (710)
...++..+... +.++++|+||+|+.+.
T Consensus 129 ~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 129 QINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp HHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred HHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 34555555443 6899999999999864
No 25
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.26 E-value=2.5e-11 Score=118.93 Aligned_cols=117 Identities=17% Similarity=0.229 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.+......+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~------------------------------------------ 63 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDF------------------------------------------ 63 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEE------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeE------------------------------------------
Confidence 35799999999999999999999875322111110000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---H
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (710)
....+.+.+ ....+.||||||.. .+..+...|++.++++|+ |.+++....-. .
T Consensus 64 ---------~~~~~~~~~-~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~iil-V~D~~~~~s~~~~~~ 119 (192)
T 2il1_A 64 ---------KIKTVELRG-KKIRLQIWDTAGQE-------------RFNSITSAYYRSAKGIIL-VYDITKKETFDDLPK 119 (192)
T ss_dssp ---------EEEEEEETT-EEEEEEEEEECCSG-------------GGHHHHHHHHHHCSEEEE-EEETTCHHHHHTHHH
T ss_pred ---------EEEEEEECC-eEEEEEEEeCCCcH-------------HHHHHHHHHhcCCCEEEE-EEECcCHHHHHHHHH
Confidence 000111110 11368999999943 334566788888885555 55554332221 2
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
++..++...+.+.++++|+||+|+.+
T Consensus 120 ~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 120 WMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECccccc
Confidence 23455666666789999999999964
No 26
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.26 E-value=1.1e-10 Score=113.14 Aligned_cols=123 Identities=20% Similarity=0.349 Sum_probs=75.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
+++|+|+|..|+|||||+|+|++..+ +.+.. .+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~----------------------------------------- 38 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKI----------------------------------------- 38 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSC-----------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCcccee-----------------------------------------
Confidence 46899999999999999999999875 32221 111111
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcC-CCe--EEEEEecCCCcccc-
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQ-PSC--LILAVTPANSDLAN- 201 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~-~~~--iIL~V~~a~~d~~~- 201 (710)
..+.+ ..+.+|||||+..... .+....+.++.+...|++. .+. +++.|+++......
T Consensus 39 ------------~~~~~-----~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~ 99 (190)
T 2cxx_A 39 ------------IEIEW-----KNHKIIDMPGFGFMMG--LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII 99 (190)
T ss_dssp ------------EEEEE-----TTEEEEECCCBSCCTT--SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHH
T ss_pred ------------EEEec-----CCEEEEECCCcccccc--CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHH
Confidence 11111 1589999999764321 1233455677788888775 443 45556665432110
Q ss_pred h---------HHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 202 S---------DALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 202 ~---------~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
. ....+.+.+...+.++++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 100 KRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN 137 (190)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC
T ss_pred HhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc
Confidence 0 0122334444457899999999999865
No 27
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=4.6e-11 Score=114.68 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=70.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.+....+++.......
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~-------------------------------------- 51 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNK-------------------------------------- 51 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEE--------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEE--------------------------------------
Confidence 457999999999999999999998874433322221111000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SD 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~ 203 (710)
.+.+. .....+.||||||.. .++.+...|+.+++++|++ .++.....- ..
T Consensus 52 ------------~~~~~-~~~~~~~~~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v-~d~~~~~s~~~~~~ 104 (180)
T 2g6b_A 52 ------------VLDVD-GVKVKLQMWDTAGQE-------------RFRSVTHAYYRDAHALLLL-YDVTNKASFDNIQA 104 (180)
T ss_dssp ------------EEEET-TEEEEEEEEECCCC---------------------CCGGGCSEEEEE-EETTCHHHHHTHHH
T ss_pred ------------EEEEC-CEEEEEEEEeCCCcH-------------HHHHHHHHHccCCCEEEEE-EECCCHHHHHHHHH
Confidence 00010 001368999999943 3455667889999855554 454433221 12
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+..+....+.+.++++|+||+|+.+.
T Consensus 105 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 105 WLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp HHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred HHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 234455555567899999999999863
No 28
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.25 E-value=5.8e-11 Score=116.80 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=95.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.+......+ +...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~---~~~~-------------------------------------- 46 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG---IDFK-------------------------------------- 46 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCS---EEEE--------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc---eeEE--------------------------------------
Confidence 46899999999999999999999876332111000 0000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (710)
...+.+. .....+.||||||.. .++.+...|++.++++|+ |.++.....-..
T Consensus 47 ----------~~~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~-v~d~~~~~s~~~~~~ 101 (203)
T 1zbd_A 47 ----------VKTIYRN-DKRIKLQIWDTAGLE-------------RYRTITTAYYRGAMGFIL-MYDITNEESFNAVQD 101 (203)
T ss_dssp ----------EEEEEET-TEEEEEEEEEECCSG-------------GGHHHHHTTGGGCSEEEE-EEETTCHHHHHHHHH
T ss_pred ----------EEEEEEC-CeEEEEEEEECCCch-------------hhcchHHHhhcCCCEEEE-EEECcCHHHHHHHHH
Confidence 0000000 012368999999964 234567789999985555 445543322111
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceEEEEcCChhhhhhcccHHHHHHHHHHhccCCCc-
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKDALVAEEKFFRSRPV- 282 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~di~~~~s~~~a~~~E~~fF~~~~~- 282 (710)
++..+......+.++++|+||+|+.+.... +..++...-..+ . .+.
T Consensus 102 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~~-------------------------------~~~~~~~~~~~~-~-~~~~ 148 (203)
T 1zbd_A 102 WSTQIKTYSWDNAQVLLVGNKCDMEDERVV-------------------------------SSERGRQLADHL-G-FEFF 148 (203)
T ss_dssp HHHHHHHHSCSSCEEEEEEECTTCTTSCCS-------------------------------CHHHHHHHHHHH-T-CEEE
T ss_pred HHHHHHHhcCCCCCEEEEEECcccCccccc-------------------------------CHHHHHHHHHHC-C-CeEE
Confidence 233344444457899999999999753210 011111110111 0 011
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHhhh
Q 005171 283 YNGLADRCGVPQLAKKLNQILVQHIKAIL 311 (710)
Q Consensus 283 ~~~~~~~~Gi~~L~~~L~~~L~~~i~~~L 311 (710)
..+...+.|+..|...|.+.+.+++...+
T Consensus 149 ~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~ 177 (203)
T 1zbd_A 149 EASAKDNINVKQTFERLVDVICEKMSESL 177 (203)
T ss_dssp ECBTTTTBSSHHHHHHHHHHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 23456778999999988887777665543
No 29
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.24 E-value=2.8e-11 Score=125.12 Aligned_cols=122 Identities=18% Similarity=0.249 Sum_probs=74.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
.|+|+|+|.+|+|||||+|+|+|..+ .++.- .+|.-. ..+
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~------------~~~-------------------------- 41 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEK------------KTG-------------------------- 41 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEE------------EEE--------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEE------------EEE--------------------------
Confidence 48999999999999999999999863 22211 111110 000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHh--cCCCeEEEEEecCCCcccchH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYI--KQPSCLILAVTPANSDLANSD 203 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi--~~~~~iIL~V~~a~~d~~~~~ 203 (710)
.+.+. ...+.||||||+.+....++... ..+.+...|+ .+++. +++|+++... ..
T Consensus 42 -------------~~~~~---~~~~~lvDtpG~~~~~~~~~~~~---~~e~i~~~~~~~~~~d~-vi~VvDas~~---~~ 98 (256)
T 3iby_A 42 -------------EFLLG---EHLIEITDLPGVYSLVANAEGIS---QDEQIAAQSVIDLEYDC-IINVIDACHL---ER 98 (256)
T ss_dssp -------------EEEET---TEEEEEEECCCCSSCC------C---HHHHHHHHHHHHSCCSE-EEEEEEGGGH---HH
T ss_pred -------------EEEEC---CeEEEEEeCCCcccccccccCCC---HHHHHHHHHHhhCCCCE-EEEEeeCCCc---hh
Confidence 11111 12689999999976542211112 2234556777 78884 5555555442 22
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+.+..++...+.++++|+||+|+...
T Consensus 99 ~~~l~~~l~~~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 99 HLYLTSQLFELGKPVVVALNMMDIAEH 125 (256)
T ss_dssp HHHHHHHHTTSCSCEEEEEECHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEChhcCCc
Confidence 355667777778999999999999753
No 30
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.23 E-value=1.6e-11 Score=117.71 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~l 73 (710)
..++|+|+|..++|||||+|+|++..+.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~ 35 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC--
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4678999999999999999999998763
No 31
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.23 E-value=8.8e-11 Score=116.91 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=46.5
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCC----CCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADP----DGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp----~g~rtI~VlT 223 (710)
..+.|||||| .+.++.+...|++.++++| +|.++.....-.....+...+.. .+.++++|+|
T Consensus 84 ~~l~l~Dt~G-------------~~~~~~~~~~~~~~~d~ii-lV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 84 VHLQLWDTAG-------------QERFRSLTTAFFRDAMGFL-LMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp EEEEEEEEES-------------HHHHHHHHHHHHTTCCEEE-EEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred EEEEEEECCC-------------cHhHHhHHHHHhcCCCEEE-EEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 3689999999 2356777889999998555 55555543333333344555543 4688999999
Q ss_pred cccccC
Q 005171 224 KLDIMD 229 (710)
Q Consensus 224 K~Dl~~ 229 (710)
|+|+.+
T Consensus 150 K~Dl~~ 155 (217)
T 2f7s_A 150 KADLPD 155 (217)
T ss_dssp CTTCGG
T ss_pred CCcccc
Confidence 999965
No 32
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.23 E-value=4e-11 Score=117.15 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=69.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
...++|+|+|..++|||||+|+|++..+......+++... ..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~-~~------------------------------------- 56 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN-VE------------------------------------- 56 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE-EE-------------------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee-EE-------------------------------------
Confidence 4567899999999999999999999886332222111100 00
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
.+ . .....+.||||||... ++.+...|++.++++|++ .++.....-...
T Consensus 57 --------------~~--~-~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v-~D~~~~~s~~~~ 105 (199)
T 4bas_A 57 --------------TF--E-KGRVAFTVFDMGGAKK-------------FRGLWETYYDNIDAVIFV-VDSSDHLRLCVV 105 (199)
T ss_dssp --------------EE--E-ETTEEEEEEEECCSGG-------------GGGGGGGGCTTCSEEEEE-EETTCGGGHHHH
T ss_pred --------------EE--E-eCCEEEEEEECCCCHh-------------HHHHHHHHHhcCCEEEEE-EECCcHHHHHHH
Confidence 00 0 0123689999999642 345556789999855555 455433222222
Q ss_pred HHHHHhhCC-----------CCCcEEEeeccccccCc
Q 005171 205 LQIAGIADP-----------DGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp-----------~g~rtI~VlTK~Dl~~~ 230 (710)
......+.. .+.++|+|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 106 KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 222222211 26899999999999764
No 33
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.23 E-value=1.1e-11 Score=138.57 Aligned_cols=126 Identities=21% Similarity=0.241 Sum_probs=77.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHh
Q 005171 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQ 122 (710)
Q Consensus 44 ~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~ 122 (710)
....|.|+|||.+|+|||||+|+|+|..+..+...+ +|+...
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~------------------------------------- 62 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRI------------------------------------- 62 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CE-------------------------------------
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEE-------------------------------------
Confidence 346899999999999999999999997653222211 111111
Q ss_pred hhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 005171 123 TDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (710)
Q Consensus 123 t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (710)
...+... ...++||||||+.... ..+.+.++.++..|+..++ +||+|+++...+...
T Consensus 63 ----------------~~~~~~~-~~~~~liDT~G~~~~~-----~~~~~~~~~~~~~~~~~ad-~il~VvD~~~~~~~~ 119 (456)
T 4dcu_A 63 ----------------YSSAEWL-NYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEAD-VIIFMVNGREGVTAA 119 (456)
T ss_dssp ----------------EEECTTC-SSCCEEECCCC-----------CCHHHHHHHHHHHHHHCS-EEEEEEESSSCSCHH
T ss_pred ----------------EEEEEEC-CceEEEEECCCCCCcc-----hHHHHHHHHHHHhhHhhCC-EEEEEEeCCCCCChH
Confidence 1111111 1368999999987321 2346788889999999998 566666776666555
Q ss_pred HHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 203 DALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 203 ~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+ ..+++.+...+.++|+|+||+|+.+.
T Consensus 120 d-~~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 120 D-EEVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp H-HHHHHHHTTCCSCEEEEEECC-----
T ss_pred H-HHHHHHHHHcCCCEEEEEECccchhh
Confidence 5 56777777788999999999998753
No 34
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.22 E-value=1.3e-10 Score=112.57 Aligned_cols=68 Identities=13% Similarity=0.247 Sum_probs=43.9
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---HHHHHhhCC-CCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIADP-DGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l~la~~~dp-~g~rtI~VlT 223 (710)
..+.||||||.. .++.+...|+++++++|+ |.++.....-.+. +..+..... .+.++++|+|
T Consensus 70 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 135 (195)
T 3bc1_A 70 IHLQLWDTAGLE-------------RFRSLTTAFFRDAMGFLL-LFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGN 135 (195)
T ss_dssp EEEEEEEECCSG-------------GGHHHHHHTTTTCSEEEE-EEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEE
T ss_pred EEEEEEeCCCcH-------------HHHHHHHHHHcCCCEEEE-EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 368999999963 345667889999985555 5555433222222 222222222 5689999999
Q ss_pred cccccC
Q 005171 224 KLDIMD 229 (710)
Q Consensus 224 K~Dl~~ 229 (710)
|+|+.+
T Consensus 136 K~Dl~~ 141 (195)
T 3bc1_A 136 KSDLED 141 (195)
T ss_dssp CTTCGG
T ss_pred Cccccc
Confidence 999975
No 35
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.22 E-value=7.6e-12 Score=132.43 Aligned_cols=123 Identities=21% Similarity=0.258 Sum_probs=78.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (710)
...+.|+|||.+|+|||||+|+|+|..+.+++..+ +||.... +.+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~------------gi~---------------------- 51 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIV------------GIH---------------------- 51 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEE------------EEE----------------------
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEE------------EEE----------------------
Confidence 34467999999999999999999998764433322 2332211 000
Q ss_pred hhhcCCCCcccccceEEEEecCCccceEEEeCCCCC-cCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 005171 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGIT-KVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (710)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~-~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (710)
.. ....+++|||||+. .. ...+...+...+..++...+ ++++|+++.. +...
T Consensus 52 -------------------~~-~~~~i~~iDTpG~~~~~-----~~~l~~~~~~~~~~~l~~~D-~vl~Vvd~~~-~~~~ 104 (301)
T 1ega_A 52 -------------------TE-GAYQAIYVDTPGLHMEE-----KRAINRLMNKAASSSIGDVE-LVIFVVEGTR-WTPD 104 (301)
T ss_dssp -------------------EE-TTEEEEEESSSSCCHHH-----HHHHHHHHTCCTTSCCCCEE-EEEEEEETTC-CCHH
T ss_pred -------------------EE-CCeeEEEEECcCCCccc-----hhhHHHHHHHHHHHHHhcCC-EEEEEEeCCC-CCHH
Confidence 00 11368999999986 21 01222233344566777887 5666666655 5544
Q ss_pred HHHHHHHhhCCCCCcEEEeeccccccC
Q 005171 203 DALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 203 ~~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
+ ..+++.+...+.|.|+|+||+|+..
T Consensus 105 ~-~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 105 D-EMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp H-HHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred H-HHHHHHHHhcCCCEEEEEECcccCc
Confidence 4 4556666656789999999999986
No 36
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.22 E-value=4.8e-11 Score=116.29 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~l 73 (710)
...+|+|+|..++|||||+|+|++..+.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~ 33 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFH 33 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC
Confidence 3568999999999999999999999764
No 37
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.22 E-value=2.6e-11 Score=124.51 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=70.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc--cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI--CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~--~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
-.+|+|||.+|+|||||+|+|+|..+...+... +|+.+......
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~---------------------------------- 66 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRR---------------------------------- 66 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEE----------------------------------
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEE----------------------------------
Confidence 457999999999999999999999876544322 44433211110
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH-
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD- 203 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~- 203 (710)
+ ....++||||||+.+...... ......+...+..+...++ ++|+|++++. +...+
T Consensus 67 -----------------~---~~~~i~liDTPG~~~~~~~~~-~~~~~~i~~~~~~~~~~~d-~il~V~d~~~-~~~~~~ 123 (247)
T 3lxw_A 67 -----------------W---DKCHVEVVDTPDIFSSQVSKT-DPGCEERGHCYLLSAPGPH-ALLLVTQLGR-FTAQDQ 123 (247)
T ss_dssp -----------------E---TTEEEEEEECCSCSSTTHHHH-STTSHHHHHHHHHHTTCCS-EEEEEEETTB-CCHHHH
T ss_pred -----------------E---CCcEEEEEECCCCCCCCCCcH-HHHHHHHHHHHHhcCCCCC-EEEEEEeCCC-CCHHHH
Confidence 0 013589999999975421100 0011122222223348888 5555666653 43333
Q ss_pred -HHHHHHhhCCC---CCcEEEeeccccccC
Q 005171 204 -ALQIAGIADPD---GYRTIGIITKLDIMD 229 (710)
Q Consensus 204 -~l~la~~~dp~---g~rtI~VlTK~Dl~~ 229 (710)
.++.++++-.. +.++|+|.||.|+.+
T Consensus 124 ~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 124 QAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 23444443221 578999999999965
No 38
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.22 E-value=3.7e-11 Score=113.92 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=67.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+|+|..++|||||+|+|++..+.+......+.....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 42 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI----------------------------------------- 42 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEE-----------------------------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEE-----------------------------------------
Confidence 579999999999999999999987633221111100000
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDA 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~~ 204 (710)
..+.+.+ ....+.||||||.... ..+...|++.++++| +|.++.....- ...
T Consensus 43 ----------~~~~~~~-~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~ 97 (170)
T 1g16_A 43 ----------KTVDING-KKVKLQIWDTAGQERF-------------RTITTAYYRGAMGII-LVYDITDERTFTNIKQW 97 (170)
T ss_dssp ----------EEEESSS-CEEEEEEECCTTGGGT-------------SCCCHHHHTTEEEEE-EEEETTCHHHHHTHHHH
T ss_pred ----------EEEEECC-EEEEEEEEeCCCChhh-------------hhhHHHHhccCCEEE-EEEECCCHHHHHHHHHH
Confidence 0011100 1135899999995432 234456888888555 45555433221 122
Q ss_pred HHHHHhhCCCCCcEEEeecccccc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
+..+......+.++++|+||+|+.
T Consensus 98 ~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 98 FKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp HHHHHHHSCTTCEEEEEEECTTCT
T ss_pred HHHHHHhcCCCCcEEEEEECccCC
Confidence 344445555578999999999994
No 39
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.22 E-value=4.1e-11 Score=114.78 Aligned_cols=117 Identities=19% Similarity=0.306 Sum_probs=70.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
..++|+|+|..|+|||||+|+|++..+.+ ....+|+.... ......+
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~-------------~~~~~~~------------------- 54 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVS-DYDPTIEDSYT-------------KICSVDG------------------- 54 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCS-SCCTTCCEEEE-------------EEEEETT-------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCCcCceEE-------------EEEEECC-------------------
Confidence 45689999999999999999999986532 22222221110 0000000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH-
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~- 204 (710)
....+.||||||.... ..+...|+..++++|+++ ++.....-...
T Consensus 55 --------------------~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~ 100 (181)
T 2fn4_A 55 --------------------IPARLDILDTAGQEEF-------------GAMREQYMRAGHGFLLVF-AINDRQSFNEVG 100 (181)
T ss_dssp --------------------EEEEEEEEECCCTTTT-------------SCCHHHHHHHCSEEEEEE-ETTCHHHHHHHH
T ss_pred --------------------EEEEEEEEECCCchhh-------------HHHHHHHHhhCCEEEEEE-eCCCHHHHHHHH
Confidence 0135899999995432 233456777888555554 44432211111
Q ss_pred --H-HHHHhhCCCCCcEEEeeccccccC
Q 005171 205 --L-QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 --l-~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
+ .+.+.....+.++++|+||+|+.+
T Consensus 101 ~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 101 KLFTQILRVKDRDDFPVVLVGNKADLES 128 (181)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECGGGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 1 233555566789999999999975
No 40
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.22 E-value=9.1e-11 Score=110.61 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=69.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..|+|||||+|+|++..+. ....+++.......
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~-------------------------------------- 44 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKK-------------------------------------- 44 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEE--------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC-CCCCCCcceEEEEE--------------------------------------
Confidence 357999999999999999999988753 22222221111000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (710)
+.+. .....+.||||||.. ....+...|++.++++|+++ ++.....-..
T Consensus 45 -------------~~~~-~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~ 96 (168)
T 1u8z_A 45 -------------VVLD-GEEVQIDILDTAGQE-------------DYAAIRDNYFRSGEGFLCVF-SITEMESFAATAD 96 (168)
T ss_dssp -------------EEET-TEEEEEEEEECCC----------------CHHHHHHHHHHCSEEEEEE-ETTCHHHHHHHHH
T ss_pred -------------EEEC-CEEEEEEEEECCCcc-------------hhHHHHHHHhhcCCEEEEEE-ECCCHHHHHHHHH
Confidence 0000 011368999999943 33456677888888655554 4443221111
Q ss_pred HH-HHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 AL-QIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l-~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+ .+.+.....+.++++|+||+|+.+.
T Consensus 97 ~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 97 FREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 12 2333344457899999999999753
No 41
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.21 E-value=9.9e-11 Score=113.08 Aligned_cols=117 Identities=19% Similarity=0.204 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.+......+.....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 49 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGS---------------------------------------- 49 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEE----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE----------------------------------------
Confidence 4689999999999999999999887633222111100000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---H
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (710)
..+.+.+ ....+.||||||.. .++.+...|++.++++|+++ ++.....-. .
T Consensus 50 -----------~~~~~~~-~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~ 103 (186)
T 2bme_A 50 -----------KIINVGG-KYVKLQIWDTAGQE-------------RFRSVTRSYYRGAAGALLVY-DITSRETYNALTN 103 (186)
T ss_dssp -----------EEEEETT-EEEEEEEEEECCSG-------------GGHHHHHTTSTTCSEEEEEE-ETTCHHHHHTHHH
T ss_pred -----------EEEEECC-EEEEEEEEeCCCcH-------------HHHHHHHHHHhcCCEEEEEE-ECcCHHHHHHHHH
Confidence 0001100 11358999999943 34556778999998555554 444322211 1
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
++..++.....+.++++|+||+|+.+
T Consensus 104 ~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 104 WLTDARMLASQNIVIILCGNKKDLDA 129 (186)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECccccc
Confidence 23334455556789999999999964
No 42
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.21 E-value=8.6e-11 Score=110.98 Aligned_cols=115 Identities=19% Similarity=0.216 Sum_probs=67.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+|+|..++|||||+|+|++..+.+ ...+++...... .
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~-------------~-------------------------- 43 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVE-KYDPTIEDSYRK-------------Q-------------------------- 43 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCC-SCCCCSEEEEEE-------------E--------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCccceEEE-------------E--------------------------
Confidence 479999999999999999999876522 221111111000 0
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc--cc-hHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL--AN-SDA 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~--~~-~~~ 204 (710)
+.+. .....+.||||||.... ..+...|++.++++|+++ ++.... .. ...
T Consensus 44 ------------~~~~-~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~ 96 (167)
T 1c1y_A 44 ------------VEVD-CQQCMLEILDTAGTEQF-------------TAMRDLYMKNGQGFALVY-SITAQSTFNDLQDL 96 (167)
T ss_dssp ------------EESS-SCEEEEEEEEECSSCSS-------------TTHHHHHHHHCSEEEEEE-ETTCHHHHHTHHHH
T ss_pred ------------EEEC-CEEEEEEEEECCChHHH-------------HHHHHHHhccCCEEEEEE-ECCCHHHHHHHHHH
Confidence 0000 01135899999996532 234456778888655554 444321 11 112
Q ss_pred HH-HHHhhCCCCCcEEEeeccccccC
Q 005171 205 LQ-IAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 l~-la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
+. +.+.....+.++++|+||+|+.+
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 97 REQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp HHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred HHHHHHhhCcCCCcEEEEEECccccc
Confidence 22 33334455789999999999975
No 43
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.21 E-value=8.5e-11 Score=112.44 Aligned_cols=117 Identities=18% Similarity=0.282 Sum_probs=67.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..|+|||||+|+|++..+.+... +++... +
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~-------------~---------------------------- 44 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLF-HTIGVE-------------F---------------------------- 44 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEE-------------E----------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCC-Cceeee-------------E----------------------------
Confidence 4689999999999999999999887532111 100000 0
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (710)
....+.+.+ ....+.||||||.. .++.+...|++.++++|+++ ++.....-..
T Consensus 45 ---------~~~~~~~~~-~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~ 100 (177)
T 1wms_A 45 ---------LNKDLEVDG-HFVTMQIWDTAGQE-------------RFRSLRTPFYRGSDCCLLTF-SVDDSQSFQNLSN 100 (177)
T ss_dssp ---------EEEEEEETT-EEEEEEEEECCCCG-------------GGHHHHGGGGTTCSEEEEEE-ETTCHHHHHTHHH
T ss_pred ---------EEEEEEECC-EEEEEEEEeCCCch-------------hhhhhHHHHHhcCCEEEEEE-ECcCHHHHHHHHH
Confidence 000111110 11368999999943 34456678899998555554 4443222111
Q ss_pred HHHHHHhhC----CCCCcEEEeeccccccC
Q 005171 204 ALQIAGIAD----PDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~d----p~g~rtI~VlTK~Dl~~ 229 (710)
++..+.... ..+.++++|+||+|+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 101 WKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp HHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred HHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 122222221 25689999999999973
No 44
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.20 E-value=8e-11 Score=114.86 Aligned_cols=118 Identities=12% Similarity=0.144 Sum_probs=70.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.+...... .....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~~~---------------------------------------- 63 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI-GVEFS---------------------------------------- 63 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCS-SEEEE----------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-ceeEE----------------------------------------
Confidence 4689999999999999999999987643221110 00000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---H
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (710)
...+.+. .....+.||||||.... +.+...|++.++.+|++ .++.....-. .
T Consensus 64 ----------~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v-~D~~~~~s~~~~~~ 118 (193)
T 2oil_A 64 ----------TRTVMLG-TAAVKAQIWDTAGLERY-------------RAITSAYYRGAVGALLV-FDLTKHQTYAVVER 118 (193)
T ss_dssp ----------EEEEEET-TEEEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEEEE-EETTCHHHHHTHHH
T ss_pred ----------EEEEEEC-CEEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEE-EECCCHHHHHHHHH
Confidence 0001110 11236899999997532 23456788889855554 5554332211 1
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+..+......+.++++|+||+|+.+.
T Consensus 119 ~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 119 WLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp HHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 233333444457899999999999753
No 45
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.20 E-value=1.3e-10 Score=113.01 Aligned_cols=117 Identities=16% Similarity=0.168 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
.-.+|+|+|..|+|||||+|+|++..+.+... .++......
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~-------------------------------------- 60 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD-PTIEDSYRK-------------------------------------- 60 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCC-TTCCEEEEE--------------------------------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccC-CccceEEEE--------------------------------------
Confidence 34579999999999999999999887533221 111111000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH-
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~- 204 (710)
.+.+. .....+.||||||.. .+..+...|+..++++|++ .++.....-.+.
T Consensus 61 -------------~~~~~-~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~ 112 (190)
T 3con_A 61 -------------QVVID-GETCLLDILDTAGQE-------------EYSAMRDQYMRTGEGFLCV-FAINNSKSFADIN 112 (190)
T ss_dssp -------------EEEET-TEEEEEEEEECCC------------------------CTTCSEEEEE-EETTCHHHHHHHH
T ss_pred -------------EEEEC-CEEEEEEEEECCChH-------------HHHHHHHHhhCcCCEEEEE-EECcCHHHHHHHH
Confidence 00000 011358999999943 3445667889999865554 444432222222
Q ss_pred --HHHHHhh-CCCCCcEEEeeccccccC
Q 005171 205 --LQIAGIA-DPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 --l~la~~~-dp~g~rtI~VlTK~Dl~~ 229 (710)
+..+... ...+.++++|+||+|+.+
T Consensus 113 ~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 113 LYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp HHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 2223332 234689999999999975
No 46
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.20 E-value=2.8e-11 Score=115.96 Aligned_cols=117 Identities=20% Similarity=0.248 Sum_probs=73.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
-..++|+|+|..++|||||+|+|++..+.+.....+|...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~---------------------------------------- 45 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI---------------------------------------- 45 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTC----------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEee----------------------------------------
Confidence 4578999999999999999999999876433222111110
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
....+.+. ...+.||||||..... .+...|+..++++|++ .+++.... ...
T Consensus 46 -----------~~~~~~~~---~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v-~d~~~~~~-~~~ 96 (178)
T 2lkc_A 46 -----------GAYQVTVN---DKKITFLDTPGHEAFT-------------TMRARGAQVTDIVILV-VAADDGVM-PQT 96 (178)
T ss_dssp -----------CCCEEEET---TEEEEESCCCSSSSSS-------------CSCCSSCCCCCEEEEE-EETTCCCC-HHH
T ss_pred -----------eEEEEEeC---CceEEEEECCCCHHHH-------------HHHHHHHhhCCEEEEE-EECCCCCc-HHH
Confidence 00011111 1257899999965432 1223567788755554 45554332 334
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+..++.+...+.++++|+||+|+.+.
T Consensus 97 ~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 97 VEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp HHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred HHHHHHHHhCCCCEEEEEECccCCcC
Confidence 55666665567899999999999864
No 47
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.19 E-value=1.4e-10 Score=112.97 Aligned_cols=118 Identities=15% Similarity=0.194 Sum_probs=72.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.+......|......
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------- 56 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR--------------------------------------- 56 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEE---------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEE---------------------------------------
Confidence 46899999999999999999999876332221111111000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SD 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~ 203 (710)
.+.+.+ ....+.||||||.. .++.+...|++.++.+|++ .++.....- ..
T Consensus 57 ------------~~~~~~-~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~ 109 (196)
T 3tkl_A 57 ------------TIELDG-KTIKLQIWDTAGQE-------------RFRTITSSYYRGAHGIIVV-YDVTDQESFNNVKQ 109 (196)
T ss_dssp ------------EEEETT-EEEEEEEEEECCSG-------------GGCTTHHHHHTTCSEEEEE-EETTCHHHHHTHHH
T ss_pred ------------EEEECC-EEEEEEEEECCCcH-------------hhhhhHHHHHhhCCEEEEE-EECcCHHHHHHHHH
Confidence 011100 11358999999943 2334566789999855554 444432211 22
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++..+......+.++++|+||+|+.+.
T Consensus 110 ~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 110 WLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccc
Confidence 344455555667899999999999754
No 48
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.19 E-value=3.6e-11 Score=133.75 Aligned_cols=123 Identities=22% Similarity=0.258 Sum_probs=75.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
.|.|++||.+|+|||||+|+|+|..+..++..+ +||-. .++..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~------------~~~~~------------------------ 46 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDR------------IYSSA------------------------ 46 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------C------------EEEEC------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccce------------EEEEE------------------------
Confidence 589999999999999999999997653222211 12111 11110
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
... ...++||||||+.... .++.+.++.++..|++.++ ++|+|+++.......+ .
T Consensus 47 -----------------~~~-~~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~ad-~il~vvD~~~~~~~~d-~ 101 (436)
T 2hjg_A 47 -----------------EWL-NYDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEAD-VIIFMVNGREGVTAAD-E 101 (436)
T ss_dssp -----------------TTC-SSCCEEEC--------------CHHHHHHHHHHHHHHHCS-EEEEEEETTTCSCHHH-H
T ss_pred -----------------EEC-CceEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCC-EEEEEEeCCCCCCHHH-H
Confidence 000 1358999999986331 2366788889999999998 5666667766655544 4
Q ss_pred HHHHhhCCCCCcEEEeeccccccCc
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+++.+...+.++++|+||+|+.+.
T Consensus 102 ~~~~~l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 102 EVAKILYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHHHHHTTCCSCEEEEEECCCC---
T ss_pred HHHHHHHHcCCCEEEEEECccCccc
Confidence 5667677778999999999999754
No 49
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.19 E-value=1.3e-10 Score=115.00 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=70.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
..++|+|+|..++|||||+|+|++..+.+......+.....
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--------------------------------------- 59 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI--------------------------------------- 59 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEE---------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE---------------------------------------
Confidence 45789999999999999999999887633222111111000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---h
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---S 202 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~ 202 (710)
..+.+.+ ....+.||||||... ++.+...|+..++++|++ .++.....- .
T Consensus 60 ------------~~~~~~~-~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v-~d~~~~~s~~~~~ 112 (213)
T 3cph_A 60 ------------KTVDING-KKVKLQLWDTAGQER-------------FRTITTAYYRGAMGIILV-YDVTDERTFTNIK 112 (213)
T ss_dssp ------------EEEEETT-EEEEEEEECCTTGGG-------------GTCCCHHHHTTCSEEEEE-EETTCHHHHHTHH
T ss_pred ------------EEEEECC-EEEEEEEEeCCCcHH-------------HHHHHHHHhccCCEEEEE-EECCCHHHHHHHH
Confidence 0111110 013589999999542 233456788899855555 444432211 1
Q ss_pred HHHHHHHhhCCCCCcEEEeecccccc
Q 005171 203 DALQIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 203 ~~l~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
.++..+....+.+.++++|+||+|+.
T Consensus 113 ~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 113 QWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp HHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 23344455555578999999999994
No 50
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.19 E-value=1.5e-10 Score=110.34 Aligned_cols=119 Identities=16% Similarity=0.116 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
.++|+|+|..|+|||||+|+|+|..+.+....+.+.. +
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~--------------~---------------------------- 41 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDV--------------Y---------------------------- 41 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSE--------------E----------------------------
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccce--------------e----------------------------
Confidence 4689999999999999999999987632222111000 0
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH--
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (710)
...+.+.+ ....+.+|||||.... ....+...|++.++++|+++. .+....-...
T Consensus 42 ----------~~~~~~~~-~~~~~~~~D~~g~~~~-----------~~~~~~~~~~~~~~~~i~v~d-~~~~~s~~~~~~ 98 (175)
T 2nzj_A 42 ----------ERTLTVDG-EDTTLVVVDTWEAEKL-----------DKSWSQESCLQGGSAYVIVYS-IADRGSFESASE 98 (175)
T ss_dssp ----------EEEEEETT-EEEEEEEECCC------------------CHHHHHTTTSCSEEEEEEE-TTCHHHHHHHHH
T ss_pred ----------EEEEEECC-EEEEEEEEecCCCCcc-----------chhhhHHhhcccCCEEEEEEE-CCCHHHHHHHHH
Confidence 00111110 1135899999996431 123445678888886665554 3322111111
Q ss_pred -HHHHHhh-CCCCCcEEEeeccccccCc
Q 005171 205 -LQIAGIA-DPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 -l~la~~~-dp~g~rtI~VlTK~Dl~~~ 230 (710)
+..+... ...+.++++|+||+|+.+.
T Consensus 99 ~~~~l~~~~~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 99 LRIQLRRTHQADHVPIILVGNKADLARC 126 (175)
T ss_dssp HHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred HHHHHHHhhccCCCCEEEEEEChhhccc
Confidence 2222222 2347899999999999753
No 51
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.19 E-value=2e-10 Score=110.59 Aligned_cols=119 Identities=15% Similarity=0.201 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
....+|+|+|..++|||||+|+|++..+.+ ....++.......
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~------------------------------------ 58 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVE-DYEPTKADSYRKK------------------------------------ 58 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCTTCCEEEEEE------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCC-cCCCccceEEEEE------------------------------------
Confidence 345689999999999999999999887532 2222222111100
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH-
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD- 203 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~- 203 (710)
+.+. .....+.||||||... +..+...|+...+++|+++ ++.....-..
T Consensus 59 ---------------~~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~ 108 (187)
T 2a9k_A 59 ---------------VVLD-GEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVF-SITEMESFAAT 108 (187)
T ss_dssp ---------------EEET-TEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEE-ETTCHHHHHHH
T ss_pred ---------------EEEC-CEEEEEEEEECCCCcc-------------cHHHHHHHhccCCEEEEEE-ECcCHHHHHHH
Confidence 0000 0013589999999542 2345667888888655554 4443221111
Q ss_pred --HH-HHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 --AL-QIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 --~l-~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+ .+.+.....+.++++|+||+|+.+.
T Consensus 109 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 109 ADFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HHHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 12 2333444457899999999999753
No 52
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.18 E-value=5.8e-11 Score=115.71 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=38.7
Q ss_pred CCCCcchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 19 VPLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 19 ~~~~~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
......+-.+.+.+.+.+........-..++|+|+|..|||||||+|+|++..+
T Consensus 20 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 20 SINKRKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp BTTTTBCHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346667777888887776666544445678999999999999999999999875
No 53
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.18 E-value=1.3e-10 Score=114.68 Aligned_cols=117 Identities=20% Similarity=0.193 Sum_probs=66.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.+......+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~------------------------------------------ 62 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEF------------------------------------------ 62 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCE------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCccccee------------------------------------------
Confidence 46899999999999999999999875322111100000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (710)
....+.+. .....+.||||||. ..+..+...|++.++++|+++ ++.....-..
T Consensus 63 ---------~~~~~~~~-~~~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~ 118 (200)
T 2o52_A 63 ---------GSRVVNVG-GKTVKLQIWDTAGQ-------------ERFRSVTRSYYRGAAGALLVY-DITSRETYNSLAA 118 (200)
T ss_dssp ---------EEEEEEET-TEEEEEEEECCTTH-------------HHHSCCCHHHHTTCSEEEEEE-ETTCHHHHHTHHH
T ss_pred ---------EEEEEEEC-CeeeEEEEEcCCCc-------------HhHHHHHHHHhccCCEEEEEE-ECcCHHHHHHHHH
Confidence 00011111 01136899999993 234455677899998655554 4443222122
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
++..+......+.++++|+||+|+.+
T Consensus 119 ~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 119 WLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp HHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECCCccc
Confidence 23333444445789999999999964
No 54
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.18 E-value=1.1e-10 Score=131.04 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=60.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
.+|+|+|.+|+|||||+|+|+|.++..++.-+ +|+-.+.
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~---------------------------------------- 273 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIE---------------------------------------- 273 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------C----------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEE----------------------------------------
Confidence 45999999999999999999998643222211 1211100
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---H
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (710)
..+.+. ...++||||||+.+.. ..++...-.....|+..++ ++|+|++++...... .
T Consensus 274 -----------~~i~~~---g~~l~liDT~G~~~~~-----~~ve~~gi~~~~~~~~~aD-~vl~VvD~s~~~s~~~~~~ 333 (476)
T 3gee_A 274 -----------ECFIHD---KTMFRLTDTAGLREAG-----EEIEHEGIRRSRMKMAEAD-LILYLLDLGTERLDDELTE 333 (476)
T ss_dssp -----------EEEEET---TEEEEEEC-------------------------CCCSSCS-EEEEEEETTTCSSGGGHHH
T ss_pred -----------EEEEEC---CeEEEEEECCCCCcch-----hHHHHHHHHHHHhhcccCC-EEEEEEECCCCcchhhhHH
Confidence 011111 1359999999986431 1111111233456888898 566666666554432 3
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
...+.+.+. +.++|+|+||+|+.+.
T Consensus 334 ~~~~l~~l~--~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 334 IRELKAAHP--AAKFLTVANKLDRAAN 358 (476)
T ss_dssp HHHHHHHCT--TSEEEEEEECTTSCTT
T ss_pred HHHHHHhcC--CCCEEEEEECcCCCCc
Confidence 355666665 6899999999999764
No 55
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.18 E-value=2.3e-10 Score=110.51 Aligned_cols=116 Identities=18% Similarity=0.227 Sum_probs=67.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+|+|..|+|||||+|+|++..+.+... .+|.......
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~--------------------------------------- 44 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYD-PTIEDSYRKQ--------------------------------------- 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCCCCC-TTCCEEEEEE---------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CCchheEEEE---------------------------------------
Confidence 479999999999999999999887532222 2221111000
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---H
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---A 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~ 204 (710)
+.+. .....+.||||||.. .+..+...|+..++++|+++ +++....-.. .
T Consensus 45 ------------~~~~-~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~ 97 (189)
T 4dsu_A 45 ------------VVID-GETCLLDILDTAGQE-------------EYSAMRDQYMRTGEGFLCVF-AINNTKSFEDIHHY 97 (189)
T ss_dssp ------------EEET-TEEEEEEEEECCCC----------------CTTHHHHHHHCSEEEEEE-ETTCHHHHHHHHHH
T ss_pred ------------EEEC-CcEEEEEEEECCCcH-------------HHHHHHHHHHhcCCEEEEEE-ECCCHHHHHHHHHH
Confidence 0000 011358899999954 23345567888888555554 4443221111 1
Q ss_pred HH-HHHhhCCCCCcEEEeeccccccCc
Q 005171 205 LQ-IAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~-la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+. +.......+.++++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 98 REQIKRVKDSEDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp HHHHHHHTTCSCCCEEEEEECTTSSSC
T ss_pred HHHHHHhcCCCCCcEEEEEECccCccc
Confidence 22 223344457899999999999753
No 56
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.18 E-value=5.8e-11 Score=116.73 Aligned_cols=68 Identities=21% Similarity=0.225 Sum_probs=42.1
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---HHHHHHhhCC---CCCcEEEe
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADP---DGYRTIGI 221 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l~la~~~dp---~g~rtI~V 221 (710)
..+.||||||.. .+..+...|++.++++|+ |.++.....-.. ++..+....+ .+.++++|
T Consensus 73 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 138 (208)
T 2yc2_C 73 VELFLLDTAGSD-------------LYKEQISQYWNGVYYAIL-VFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138 (208)
T ss_dssp EEEEEEETTTTH-------------HHHHHHSTTCCCCCEEEE-EEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEE
T ss_pred EEEEEEECCCcH-------------HHHHHHHHHHhhCcEEEE-EEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEE
Confidence 368999999953 456677889999985555 455543322222 2333344444 57899999
Q ss_pred eccccccC
Q 005171 222 ITKLDIMD 229 (710)
Q Consensus 222 lTK~Dl~~ 229 (710)
+||+|+.+
T Consensus 139 ~nK~Dl~~ 146 (208)
T 2yc2_C 139 ANKTDLPP 146 (208)
T ss_dssp EECC----
T ss_pred EECcccch
Confidence 99999975
No 57
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.17 E-value=4.7e-11 Score=112.92 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
..+|+|+|..++|||||+|+|++..+
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC
Confidence 45799999999999999999998865
No 58
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=5.7e-11 Score=115.95 Aligned_cols=117 Identities=19% Similarity=0.228 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.+......+ . .+
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~----------~----~~---------------------------- 60 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG----------I----DF---------------------------- 60 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEET----------T----TE----------------------------
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCee----------e----EE----------------------------
Confidence 46799999999999999999998775322110000 0 00
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SD 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~ 203 (710)
....+.+.+ ....+.|||||| .+.++.+...|++.++++|++ .++.....- ..
T Consensus 61 ---------~~~~~~~~~-~~~~~~i~Dt~G-------------~~~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~ 116 (191)
T 3dz8_A 61 ---------KVKTVYRHE-KRVKLQIWDTAG-------------QERYRTITTAYYRGAMGFILM-YDITNEESFNAVQD 116 (191)
T ss_dssp ---------EEEEEEETT-TTEEEEEECHHH-------------HHHCHHHHHHHHTTCCEEEEE-EETTCHHHHHTHHH
T ss_pred ---------EEEEEEECC-EEEEEEEEeCCC-------------hHHHHHHHHHHHccCCEEEEE-EECcCHHHHHHHHH
Confidence 000111111 123689999999 235667788899999855554 444432111 22
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
++..++.....+.++++|+||+|+.+
T Consensus 117 ~~~~i~~~~~~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 117 WATQIKTYSWDNAQVILVGNKCDMEE 142 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 34445555556789999999999964
No 59
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.16 E-value=6e-11 Score=113.43 Aligned_cols=118 Identities=16% Similarity=0.176 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||+|+|++..+..... .++.....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~--------------------------------------- 53 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCP-HTIGVEFG--------------------------------------- 53 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCT-TSCCCCEE---------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-CccceEEE---------------------------------------
Confidence 35689999999999999999999987632211 11111000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH--
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD-- 203 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~-- 203 (710)
...+.+.+ ....+.||||||.. .++.+...|++.++++|+ |.+++....-.+
T Consensus 54 -----------~~~~~~~~-~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 107 (179)
T 1z0f_A 54 -----------TRIIEVSG-QKIKLQIWDTAGQE-------------RFRAVTRSYYRGAAGALM-VYDITRRSTYNHLS 107 (179)
T ss_dssp -----------EEEEEETT-EEEEEEEEECTTGG-------------GTCHHHHHHHHTCSEEEE-EEETTCHHHHHTHH
T ss_pred -----------EEEEEECC-eEEEEEEEECCCCh-------------HhhhhHHHHhccCCEEEE-EEeCcCHHHHHHHH
Confidence 00111100 11368999999943 234566788999985555 455543322222
Q ss_pred -HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 -ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 -~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
++..++.....+.++++|+||+|+.+
T Consensus 108 ~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 108 SWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECccccc
Confidence 23334555555789999999999964
No 60
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.16 E-value=8.7e-11 Score=110.62 Aligned_cols=115 Identities=20% Similarity=0.221 Sum_probs=68.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+|+|..|+|||||+|+|++..+.+... +++.... ..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~-------------~~--------------------------- 42 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYD-PTIEDFY-------------RK--------------------------- 42 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCC-TTCCEEE-------------EE---------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCC-CCcceeE-------------EE---------------------------
Confidence 479999999999999999999887633221 1111100 00
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~--- 204 (710)
.+.+. .....+.||||||... +..+...|++..+.+|+++ ++.....-...
T Consensus 43 -----------~~~~~-~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~ 96 (167)
T 1kao_A 43 -----------EIEVD-SSPSVLEILDTAGTEQ-------------FASMRDLYIKNGQGFILVY-SLVNQQSFQDIKPM 96 (167)
T ss_dssp -----------EEEET-TEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEE-ETTCHHHHHHHHHH
T ss_pred -----------EEEEC-CEEEEEEEEECCCchh-------------hHHHHHHHhccCCEEEEEE-eCCCHHHHHHHHHH
Confidence 00110 0113589999999542 2345567888888655554 44432211111
Q ss_pred -HHHHHhhCCCCCcEEEeeccccccC
Q 005171 205 -LQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 -l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..+.+.....+.++++|+||+|+.+
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 97 RDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp HHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred HHHHHHhcCCCCCCEEEEEECCcccc
Confidence 1233444455789999999999974
No 61
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.16 E-value=1.2e-10 Score=113.66 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=68.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.+......+... .
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--------------~--------------------------- 59 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF--------------G--------------------------- 59 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSE--------------E---------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccccee--------------E---------------------------
Confidence 34799999999999999999999876332211101000 0
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---H
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (710)
...+.+.+ ....+.||||||... ++.+...|++.++++|++ .++.....-. .
T Consensus 60 ----------~~~~~~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v-~d~~~~~s~~~~~~ 114 (191)
T 2a5j_A 60 ----------ARMVNIDG-KQIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLV-YDITRRETFNHLTS 114 (191)
T ss_dssp ----------EEEEEETT-EEEEEEEECCTTGGG-------------TSCCCHHHHTTCSEEEEE-EETTCHHHHHTHHH
T ss_pred ----------EEEEEECC-EEEEEEEEECCCchh-------------hhhhHHHHhccCCEEEEE-EECCCHHHHHHHHH
Confidence 00111110 113689999999542 223455788899865555 4444322211 2
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.+..+......+.++++|+||+|+.+
T Consensus 115 ~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 115 WLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHhcCCCCCEEEEEECcccCC
Confidence 23334444455789999999999964
No 62
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.16 E-value=8e-11 Score=115.91 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~l 73 (710)
...+|+|+|..++|||||+|+|++..+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~ 34 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS 34 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 3468999999999999999999998764
No 63
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.16 E-value=3.2e-10 Score=111.35 Aligned_cols=120 Identities=15% Similarity=0.215 Sum_probs=72.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhh
Q 005171 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (710)
Q Consensus 44 ~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (710)
....++|+|+|..++|||||+|+|++..+.+ ...+++.......
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~----------------------------------- 54 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVE-DYEPTKADSYRKK----------------------------------- 54 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCTTCCEEEEEE-----------------------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceEEEEE-----------------------------------
Confidence 3456789999999999999999999887532 2222221111000
Q ss_pred hhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch-
Q 005171 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS- 202 (710)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~- 202 (710)
+.+. .....+.||||||... +..+...|+...+++|+++ ++.....-.
T Consensus 55 ----------------~~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~ 103 (206)
T 2bov_A 55 ----------------VVLD-GEEVQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVF-SITEMESFAA 103 (206)
T ss_dssp ----------------EEET-TEEEEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEE-ETTCHHHHHH
T ss_pred ----------------EEEC-CEEEEEEEEcCCChhh-------------hHHHHHHHHhhCCEEEEEE-ECCCHHHHHH
Confidence 0000 0113689999999542 2345667888888655554 444322111
Q ss_pred --HHHH-HHHhhCCCCCcEEEeeccccccCc
Q 005171 203 --DALQ-IAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 203 --~~l~-la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.++. +.+.....+.++++|+||+|+.+.
T Consensus 104 ~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 104 TADFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp HHHHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 1122 233334457899999999999753
No 64
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.15 E-value=8.1e-11 Score=114.56 Aligned_cols=118 Identities=17% Similarity=0.196 Sum_probs=70.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.+......+. .+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~--------------~~~--------------------------- 60 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGI--------------DFK--------------------------- 60 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCC--------------EEE---------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeE--------------EEE---------------------------
Confidence 457999999999999999999998763321111000 000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---H
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (710)
...+.+. .....+.||||||.... +.+...|++.++++|+ |.+++....-. .
T Consensus 61 ----------~~~~~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~-v~d~~~~~s~~~~~~ 115 (189)
T 2gf9_A 61 ----------VKTVYRH-DKRIKLQIWDTAGQERY-------------RTITTAYYRGAMGFLL-MYDIANQESFAAVQD 115 (189)
T ss_dssp ----------EEEEEET-TEEEEEEEEECCSCCSS-------------CCSGGGGGTTCSEEEE-EEETTCHHHHHTHHH
T ss_pred ----------EEEEEEC-CeEEEEEEEeCCCcHHH-------------hhhHHHhccCCCEEEE-EEECCCHHHHHHHHH
Confidence 0000110 01136899999996432 1234568888985555 44554322211 2
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++..+......+.++++|+||+|+.+.
T Consensus 116 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 116 WATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccc
Confidence 233444444457899999999999753
No 65
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.15 E-value=9.9e-11 Score=109.95 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=67.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+|+|..|+|||||+|+|++..+.+... .++......
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~~~~---------------------------------------- 42 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECD-PTIEDSYRK---------------------------------------- 42 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCC-TTCCEEEEE----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccC-CccceEEEE----------------------------------------
Confidence 369999999999999999999887533221 111110000
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~--- 204 (710)
.+.+. .....+.||||||.... ..+...|+..++.+|+++ ++.....-...
T Consensus 43 -----------~~~~~-~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~~~~~~~~~ 96 (166)
T 2ce2_X 43 -----------QVVID-GETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVF-AINNTKSFEDIHQY 96 (166)
T ss_dssp -----------EEEET-TEEEEEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEE-ETTCHHHHHHHHHH
T ss_pred -----------EEEEC-CEEEEEEEEECCCchhh-------------hHHHHHhhccCCEEEEEE-ECCCHHHHHHHHHH
Confidence 00000 01135899999996532 234556788888655555 44432221221
Q ss_pred HHHHHh-hCCCCCcEEEeeccccccC
Q 005171 205 LQIAGI-ADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 l~la~~-~dp~g~rtI~VlTK~Dl~~ 229 (710)
+..+.. ....+.++++|+||+|+.+
T Consensus 97 ~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 97 REQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp HHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 222222 2334789999999999976
No 66
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.15 E-value=2.7e-10 Score=126.71 Aligned_cols=205 Identities=16% Similarity=0.260 Sum_probs=110.6
Q ss_pred CcCCCCcchHHHHHHHHHHHHHhCCC--C---CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEec
Q 005171 17 SAVPLGGSVIPLVNKLQDIFAQLGSQ--S---TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLL 90 (710)
Q Consensus 17 ~~~~~~~~l~~~~~kl~d~~~~~g~~--~---~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~ 90 (710)
.++.-+..+-++++.+.+.+...+.. . .-..++|+|||.+|||||||+|+|+|.....++.- .+|+.+.
T Consensus 145 iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~----- 219 (439)
T 1mky_A 145 VSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPV----- 219 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------C-----
T ss_pred EeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCce-----
Confidence 34445667777888877766543311 1 23457999999999999999999999864322221 1222211
Q ss_pred ccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHH
Q 005171 91 QTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADI 170 (710)
Q Consensus 91 ~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di 170 (710)
.+ .+.+.+ ..+.+|||||+.+..... +..+
T Consensus 220 -------~~---------------------------------------~i~~~g---~~~~l~Dt~G~~~~~~~~-~~~~ 249 (439)
T 1mky_A 220 -------DD---------------------------------------EVFIDG---RKYVFVDTAGLRRKSRVE-PRTV 249 (439)
T ss_dssp -------CE---------------------------------------EEEETT---EEEEESSCSCC------------
T ss_pred -------EE---------------------------------------EEEECC---EEEEEEECCCCccccccc-hhhH
Confidence 01 111211 258899999985321100 0000
Q ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCccccHHHHHhCCccccccceE
Q 005171 171 EARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYV 250 (710)
Q Consensus 171 ~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~~~~~~~l~~~~~~l~lG~~ 250 (710)
+......+..++..++ ++++|.++.......+ ..++..+...+.++++|+||+|+.+......+
T Consensus 250 e~~~~~~~~~~i~~ad-~vllv~d~~~~~~~~~-~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~-------------- 313 (439)
T 1mky_A 250 EKYSNYRVVDSIEKAD-VVVIVLDATQGITRQD-QRMAGLMERRGRASVVVFNKWDLVVHREKRYD-------------- 313 (439)
T ss_dssp CCSCCHHHHHHHHHCS-EEEEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGSTTGGGCHH--------------
T ss_pred HHHHHHHHHHHHhhCC-EEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECccCCCchhhHHH--------------
Confidence 0000011245777787 5555666665554444 44555555568999999999999864221000
Q ss_pred EEEcCChhhhhhcccHHHHHHHHHHhccCCCc-cccccccCCchhHHHHHHHHHHHH
Q 005171 251 GVVNRSQEDIMFNRSIKDALVAEEKFFRSRPV-YNGLADRCGVPQLAKKLNQILVQH 306 (710)
Q Consensus 251 ~V~nrs~~di~~~~s~~~a~~~E~~fF~~~~~-~~~~~~~~Gi~~L~~~L~~~L~~~ 306 (710)
.+.+....+..++...|. +.++.++.|+..|.+.+.+.+.++
T Consensus 314 --------------~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 314 --------------EFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp --------------HHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 011122222222222232 255667889999988887766544
No 67
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.14 E-value=1.9e-10 Score=119.51 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=73.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (710)
..-++|+|+|..|+|||||+|+|+|..+.+++.. .+|+.+....
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~----------------------------------- 81 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVS----------------------------------- 81 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEE-----------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEE-----------------------------------
Confidence 3457899999999999999999999987554432 2232221111
Q ss_pred hhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCCeEEEEEecCCC-ccc
Q 005171 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANS-DLA 200 (710)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~-d~~ 200 (710)
+.. ....++||||||+.+..... ..+.+.+..|+. .++++ |+|.+.+. .+.
T Consensus 82 ------------------~~~-~~~~l~iiDTpG~~~~~~~~------~~~~~~i~~~~~~~~~d~i-l~v~~~d~~~~~ 135 (270)
T 1h65_A 82 ------------------RSR-AGFTLNIIDTPGLIEGGYIN------DMALNIIKSFLLDKTIDVL-LYVDRLDAYRVD 135 (270)
T ss_dssp ------------------EEE-TTEEEEEEECCCSEETTEEC------HHHHHHHHHHTTTCEECEE-EEEEESSCCCCC
T ss_pred ------------------Eee-CCeEEEEEECCCCCCCccch------HHHHHHHHHHhhcCCCCEE-EEEEeCCCCcCC
Confidence 110 11369999999986542111 123334455543 56644 44433332 343
Q ss_pred chH--HHHHHHhhCCCC--CcEEEeeccccccCcc
Q 005171 201 NSD--ALQIAGIADPDG--YRTIGIITKLDIMDRG 231 (710)
Q Consensus 201 ~~~--~l~la~~~dp~g--~rtI~VlTK~Dl~~~~ 231 (710)
..+ .++.+....+.. .++++|+||+|+.++.
T Consensus 136 ~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 136 NLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 322 233333322222 5899999999997653
No 68
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.14 E-value=6.2e-11 Score=132.52 Aligned_cols=121 Identities=21% Similarity=0.228 Sum_probs=65.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
.+|+++|.+|+|||||+|+|+|.++..+..- .+|+... .
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~-------------~--------------------------- 264 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVV-------------E--------------------------- 264 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHH-------------H---------------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEE-------------E---------------------------
Confidence 4699999999999999999999765322221 1121110 0
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (710)
..+.+. ...++||||||+.+.. ..++...-.....++..++ ++|+|+++.......+ ..
T Consensus 265 -----------~~i~~~---g~~v~liDT~G~~~~~-----~~ve~~gi~~~~~~~~~aD-~vl~VvD~s~~~~~~~-~~ 323 (462)
T 3geh_A 265 -----------SQLVVG---GIPVQVLDTAGIRETS-----DQVEKIGVERSRQAANTAD-LVLLTIDAATGWTTGD-QE 323 (462)
T ss_dssp -----------HEEEET---TEEEEECC-------------------------CCCCSCS-EEEEEEETTTCSCHHH-HH
T ss_pred -----------EEEEEC---CEEEEEEECCccccch-----hHHHHHHHHHHhhhhhcCC-EEEEEeccCCCCCHHH-HH
Confidence 011111 1358999999985431 1111111123456778888 5666666665554443 45
Q ss_pred HHHhhCCCCCcEEEeeccccccCcc
Q 005171 207 IAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 207 la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
+.+.+.. .++|+|+||+|+.+..
T Consensus 324 i~~~l~~--~piivV~NK~Dl~~~~ 346 (462)
T 3geh_A 324 IYEQVKH--RPLILVMNKIDLVEKQ 346 (462)
T ss_dssp HHHHHTT--SCEEEEEECTTSSCGG
T ss_pred HHHhccC--CcEEEEEECCCCCcch
Confidence 5566643 6999999999998643
No 69
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.14 E-value=2.6e-10 Score=113.10 Aligned_cols=117 Identities=17% Similarity=0.270 Sum_probs=72.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+- ....+++.....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~---------------------------------------- 64 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFM---------------------------------------- 64 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCCSEEEE----------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEE----------------------------------------
Confidence 468999999999999999999988652 222211110000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SD 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~ 203 (710)
...+.+.+ ....+.||||||.. .++.+...|++.++++|+++ ++.....- ..
T Consensus 65 ----------~~~~~~~~-~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~-D~~~~~s~~~~~~ 119 (201)
T 2ew1_A 65 ----------IKTVEING-EKVKLQIWDTAGQE-------------RFRSITQSYYRSANALILTY-DITCEESFRCLPE 119 (201)
T ss_dssp ----------EEEEEETT-EEEEEEEEEECCSG-------------GGHHHHGGGSTTCSEEEEEE-ETTCHHHHHTHHH
T ss_pred ----------EEEEEECC-EEEEEEEEECCCcH-------------HHHHHHHHHHhcCCEEEEEE-ECCCHHHHHHHHH
Confidence 00111110 11358999999943 34566778999998555554 44432211 22
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
++..++...+.+.++++|+||+|+.+
T Consensus 120 ~~~~i~~~~~~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 120 WLREIEQYASNKVITVLVGNKIDLAE 145 (201)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 34445555566789999999999974
No 70
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.14 E-value=7.8e-11 Score=111.44 Aligned_cols=117 Identities=17% Similarity=0.232 Sum_probs=69.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+|+|..++|||||+|+|++..+.+......+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~------------------------------------------ 41 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFL------------------------------------------ 41 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE------------------------------------------
Confidence 46999999999999999999988763322111110000
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA--- 204 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~--- 204 (710)
...+.+. .....+.||||||.. .+..+...|+++++++|+ |.+++....-.+.
T Consensus 42 ---------~~~~~~~-~~~~~~~~~D~~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~ 97 (170)
T 1ek0_A 42 ---------TQRVTIN-EHTVKFEIWDTAGQE-------------RFASLAPXYYRNAQAALV-VYDVTKPQSFIKARHW 97 (170)
T ss_dssp ---------EEEEEET-TEEEEEEEEEECCSG-------------GGGGGHHHHHTTCSEEEE-EEETTCHHHHHHHHHH
T ss_pred ---------EEEEEEC-CEEEEEEEEECCCCh-------------hhhhhhhhhhccCcEEEE-EEecCChHHHHHHHHH
Confidence 0001110 011358999999943 233456778999985554 4555443222222
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+..+......+.++++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 98 VKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred HHHHHHhcCCCCcEEEEEECCCcccc
Confidence 22233333457889999999999754
No 71
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.14 E-value=7.8e-11 Score=111.63 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=71.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.+.... +......
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~---------------------------------------- 44 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINP-TIGASFM---------------------------------------- 44 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCC-CCSEEEE----------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCC-ceeEEEE----------------------------------------
Confidence 35799999999999999999999876332111 0000000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (710)
...+.+. .....+.||||||... .+.+...|++.++++|++ .+++....-..
T Consensus 45 ----------~~~~~~~-~~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v-~d~~~~~s~~~~~~ 99 (170)
T 1z0j_A 45 ----------TKTVQYQ-NELHKFLIWDTAGLER-------------FRALAPMYYRGSAAAIIV-YDITKEETFSTLKN 99 (170)
T ss_dssp ----------EEEEEET-TEEEEEEEEEECCSGG-------------GGGGTHHHHTTCSEEEEE-EETTCHHHHHHHHH
T ss_pred ----------EEEEEEC-CeEEEEEEEcCCCchh-------------hhcccHhhCcCCCEEEEE-EECcCHHHHHHHHH
Confidence 0000000 0113689999999642 334556788999855554 45543322222
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+..++.......++++|+||+|+.+.
T Consensus 100 ~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 100 WVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp HHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred HHHHHHHhCCCCCcEEEEEECCccccc
Confidence 234444454556889999999999753
No 72
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.14 E-value=6.2e-11 Score=112.47 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.+......+.....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~---------------------------------------- 45 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLT---------------------------------------- 45 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEE----------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEE----------------------------------------
Confidence 3579999999999999999999887532211111100000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (710)
..+.+.+ ....+.||||||.. ....+...|++.++++|++ .++.....-..
T Consensus 46 -----------~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~ 99 (170)
T 1z08_A 46 -----------KKLNIGG-KRVNLAIWDTAGQE-------------RFHALGPIYYRDSNGAILV-YDITDEDSFQKVKN 99 (170)
T ss_dssp -----------EEEESSS-CEEEEEEEECCCC--------------------CCSSTTCSEEEEE-EETTCHHHHHHHHH
T ss_pred -----------EEEEECC-EEEEEEEEECCCcH-------------hhhhhHHHHhccCCEEEEE-EECcCHHHHHHHHH
Confidence 0011100 11368999999943 2344556688888855555 44443222112
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++..++...+.+.++++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 100 WVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp HHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCeEEEEEECcccccc
Confidence 122333333346889999999999753
No 73
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.13 E-value=1.2e-10 Score=113.26 Aligned_cols=119 Identities=16% Similarity=0.229 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||+|+|++..+.+......+.. +
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--------------~--------------------------- 57 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVD--------------F--------------------------- 57 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCC--------------E---------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceE--------------E---------------------------
Confidence 34679999999999999999999887633221110000 0
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHH-HHHHHHhcCCCeEEEEEecCCCcccc---
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIR-TMIMSYIKQPSCLILAVTPANSDLAN--- 201 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~-~lv~~yi~~~~~iIL~V~~a~~d~~~--- 201 (710)
....+.+.+ ....+.||||||.. .++ .+...|++.++++|+ |.++.....-
T Consensus 58 ----------~~~~~~~~~-~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~~d~iil-v~D~~~~~s~~~~ 112 (189)
T 1z06_A 58 ----------RERAVDIDG-ERIKIQLWDTAGQE-------------RFRKSMVQHYYRNVHAVVF-VYDMTNMASFHSL 112 (189)
T ss_dssp ----------EEEEEEETT-EEEEEEEEECCCSH-------------HHHTTTHHHHHTTCCEEEE-EEETTCHHHHHTH
T ss_pred ----------EEEEEEECC-EEEEEEEEECCCch-------------hhhhhhhHHHhcCCCEEEE-EEECcCHHHHHHH
Confidence 000111111 11368999999932 344 677789999985555 4554432111
Q ss_pred hHHHH-HHHhhCCCCCcEEEeeccccccCc
Q 005171 202 SDALQ-IAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 202 ~~~l~-la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
..++. +.+.+...+.++++|+||+|+.+.
T Consensus 113 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 113 PAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp HHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 11222 333344567899999999999653
No 74
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.13 E-value=6.9e-11 Score=113.00 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
-.+|+|+|..|+|||||+|+|++..+.+......+......
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------- 54 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK--------------------------------------- 54 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE---------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEE---------------------------------------
Confidence 35799999999999999999998876332221111100000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---H
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (710)
.+.+.+ ....+.||||||... +..+...|+.+++.+|+ |.+++....-. .
T Consensus 55 ------------~~~~~~-~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~ 107 (179)
T 2y8e_A 55 ------------TMYLED-RTVRLQLWDTAGQER-------------FRSLIPSYIRDSTVAVV-VYDITNTNSFHQTSK 107 (179)
T ss_dssp ------------EEEETT-EEEEEEEEEECCSGG-------------GGGGSHHHHHTCSEEEE-EEETTCHHHHHTHHH
T ss_pred ------------EEEECC-eEEEEEEEECCCcHH-------------HHHHHHHHhcCCCEEEE-EEECCCHHHHHHHHH
Confidence 000100 113589999999532 33455678888985555 45554322111 1
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+..+....+.+.++++|+||+|+.++
T Consensus 108 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 108 WIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp HHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECCccccc
Confidence 223333333456889999999999753
No 75
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.13 E-value=1.6e-10 Score=112.24 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=69.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.+......+ ....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~-~~~~---------------------------------------- 53 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG-VDFK---------------------------------------- 53 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS-EEEE----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccc-eEEE----------------------------------------
Confidence 45899999999999999999999876332211111 0000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (710)
...+.+. .....+.||||||... ++.+...|++.++++| +|.++.....-.....
T Consensus 54 ----------~~~~~~~-~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~ 108 (195)
T 1x3s_A 54 ----------VKTISVD-GNKAKLAIWDTAGQER-------------FRTLTPSYYRGAQGVI-LVYDVTRRDTFVKLDN 108 (195)
T ss_dssp ----------EEEEEET-TEEEEEEEEEECSSGG-------------GCCSHHHHHTTCCEEE-EEEETTCHHHHHTHHH
T ss_pred ----------EEEEEEC-CeEEEEEEEeCCCchh-------------hhhhhHHHhccCCEEE-EEEECcCHHHHHHHHH
Confidence 0001110 0113689999999542 2334567888898554 5555544322222223
Q ss_pred HHHhhC----CCCCcEEEeeccccccC
Q 005171 207 IAGIAD----PDGYRTIGIITKLDIMD 229 (710)
Q Consensus 207 la~~~d----p~g~rtI~VlTK~Dl~~ 229 (710)
+...+. ..+.++++|+||+|+.+
T Consensus 109 ~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 109 WLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp HHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred HHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 333333 24688999999999953
No 76
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.13 E-value=1.4e-10 Score=120.53 Aligned_cols=118 Identities=23% Similarity=0.303 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
..+.|+++|.+|||||||+|+|+|..+ +++.-+ +|...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~---------------------------------------- 40 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEK---------------------------------------- 40 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEE----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEe----------------------------------------
Confidence 357899999999999999999999865 333211 11100
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHh--cCCCeEEEEEecCCCcccch
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYI--KQPSCLILAVTPANSDLANS 202 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi--~~~~~iIL~V~~a~~d~~~~ 202 (710)
....+.+. ...+.||||||+.+..... .. ..+...|+ .+++ ++++|+++....
T Consensus 41 -----------~~~~~~~~---~~~~~l~DtpG~~~~~~~~----~~---~~~~~~~~~~~~~d-~vi~v~D~~~~~--- 95 (271)
T 3k53_A 41 -----------KEGIMEYR---EKEFLVVDLPGIYSLTAHS----ID---ELIARNFILDGNAD-VIVDIVDSTCLM--- 95 (271)
T ss_dssp -----------EEEEEEET---TEEEEEEECCCCSCCCSSC----HH---HHHHHHHHHTTCCS-EEEEEEEGGGHH---
T ss_pred -----------eEEEEEEC---CceEEEEeCCCccccccCC----HH---HHHHHHhhhccCCc-EEEEEecCCcch---
Confidence 00011111 1248999999987543211 11 22445566 5677 455555555432
Q ss_pred HHHHHHHhhCCCC-CcEEEeeccccccC
Q 005171 203 DALQIAGIADPDG-YRTIGIITKLDIMD 229 (710)
Q Consensus 203 ~~l~la~~~dp~g-~rtI~VlTK~Dl~~ 229 (710)
..+.+..++...+ .++++|+||+|+.+
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 96 RNLFLTLELFEMEVKNIILVLNKFDLLK 123 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred hhHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence 2233444443445 89999999999864
No 77
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.13 E-value=8e-11 Score=132.25 Aligned_cols=119 Identities=23% Similarity=0.261 Sum_probs=72.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
.+|++||.+|+|||||||+|+|.++..+..- .+|+-++.-
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~--------------------------------------- 284 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISE--------------------------------------- 284 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCE---------------------------------------
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEE---------------------------------------
Confidence 5799999999999999999999865323222 223222100
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCC-cCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGIT-KVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~-~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
.+.+. ...++||||||+. ..... ++..--.....|++.++ ++|+|+++.......+ .
T Consensus 285 ------------~i~~~---g~~~~l~DTaG~~~~~~~~-----ve~~gi~~~~~~~~~aD-~vl~VvD~s~~~s~~~-~ 342 (482)
T 1xzp_A 285 ------------EIVIR---GILFRIVDTAGVRSETNDL-----VERLGIERTLQEIEKAD-IVLFVLDASSPLDEED-R 342 (482)
T ss_dssp ------------EEEET---TEEEEEEESSCCCSSCCTT-----CCCCCHHHHHHHHHHCS-EEEEEEETTSCCCHHH-H
T ss_pred ------------EEecC---CeEEEEEECCCccccchhh-----HHHHHHHHHHHHhhccc-EEEEEecCCCCCCHHH-H
Confidence 11111 1358999999987 43211 01011123456888888 5666666655443333 4
Q ss_pred HHHHhhCCCCCcEEEeeccccccC
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
++.+.+ .+.++|+|+||+|+.+
T Consensus 343 ~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 343 KILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp HHHHHH--TTSSEEEEEEECSSCC
T ss_pred HHHHHh--cCCCEEEEEECccccc
Confidence 455555 2689999999999975
No 78
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.13 E-value=3.9e-10 Score=108.16 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~l 73 (710)
...+|+|+|+.++|||||+|+|++..+.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~ 33 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQ 33 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 3457999999999999999999998764
No 79
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.13 E-value=3.4e-10 Score=106.83 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=43.9
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhh----CCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIA----DPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~----dp~g~rtI~VlT 223 (710)
..+.||||||.. .++.+...|+++++++|+ |.+++....-.........+ ...+.++++|+|
T Consensus 44 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 109 (164)
T 1r8s_A 44 ISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLIF-VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 109 (164)
T ss_dssp CEEEEEECCCCG-------------GGHHHHHHHTTTCSEEEE-EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EEEEEEEcCCCh-------------hhHHHHHHHhccCCEEEE-EEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEE
Confidence 468999999964 245667789999986555 45554332222222222222 223689999999
Q ss_pred cccccCc
Q 005171 224 KLDIMDR 230 (710)
Q Consensus 224 K~Dl~~~ 230 (710)
|+|+.+.
T Consensus 110 K~Dl~~~ 116 (164)
T 1r8s_A 110 KQDLPNA 116 (164)
T ss_dssp CTTSTTC
T ss_pred CcCCcCC
Confidence 9999753
No 80
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.12 E-value=2.1e-10 Score=113.18 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.. ...+++... +.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~-------------~~--------------------------- 46 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVD-------------FK--------------------------- 46 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCC-------------EE---------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccce-------------eE---------------------------
Confidence 4689999999999999999999987522 111110000 00
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (710)
...+.+.+ ....+.||||||.... +.+...|++.++.+| +|.++.....-..
T Consensus 47 ----------~~~~~~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~vi-lv~d~~~~~s~~~~~~ 101 (206)
T 2bcg_Y 47 ----------IKTVELDG-KTVKLQIWDTAGQERF-------------RTITSSYYRGSHGII-IVYDVTDQESFNGVKM 101 (206)
T ss_dssp ----------EEEEEETT-EEEEEEEECCTTTTTT-------------TCCCGGGGTTCSEEE-EEEETTCHHHHHHHHH
T ss_pred ----------EEEEEECC-EEEEEEEEeCCChHHH-------------HHHHHHhccCCCEEE-EEEECcCHHHHHHHHH
Confidence 00111110 1136899999995432 233456888888554 5555544322222
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++..+......+.++++|+||+|+.+.
T Consensus 102 ~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 102 WLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 233344444557899999999999753
No 81
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.12 E-value=8.3e-11 Score=111.48 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=41.2
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hHHHHHHHhhCC--CCCcEEEeec
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDALQIAGIADP--DGYRTIGIIT 223 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~~l~la~~~dp--~g~rtI~VlT 223 (710)
.+.||||||..+. ..+...|+..++++|+++ +++....- ...+..+.+... .+.++++|+|
T Consensus 52 ~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~n 117 (172)
T 2erx_A 52 TLQITDTTGSHQF-------------PAMQRLSISKGHAFILVY-SITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 117 (172)
T ss_dssp EEEEEECCSCSSC-------------HHHHHHHHHHCSEEEEEE-ETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEE
T ss_pred EEEEEECCCchhh-------------HHHHHHhcccCCEEEEEE-ECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEE
Confidence 5899999996532 345566888888555554 44432111 122233333322 3688999999
Q ss_pred cccccCc
Q 005171 224 KLDIMDR 230 (710)
Q Consensus 224 K~Dl~~~ 230 (710)
|+|+.+.
T Consensus 118 K~Dl~~~ 124 (172)
T 2erx_A 118 KCDESPS 124 (172)
T ss_dssp CGGGGGG
T ss_pred ccccccc
Confidence 9999753
No 82
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.12 E-value=2.8e-10 Score=109.66 Aligned_cols=118 Identities=16% Similarity=0.267 Sum_probs=69.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
....+|+|+|..++|||||+|+|++..+. ....+++...... .....+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~-------------~~~~~~------------------ 63 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPTIEDSYLK-------------HTEIDN------------------ 63 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEE-------------EEEETT------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceeEE-------------EEEeCC------------------
Confidence 44567999999999999999999988653 2222222111100 000000
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN--- 201 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~--- 201 (710)
....+.||||||... +..+...|++.++++|+++ +++....-
T Consensus 64 ---------------------~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~ 108 (183)
T 3kkq_A 64 ---------------------QWAILDVLDTAGQEE-------------FSAMREQYMRTGDGFLIVY-SVTDKASFEHV 108 (183)
T ss_dssp ---------------------EEEEEEEEECCSCGG-------------GCSSHHHHHHHCSEEEEEE-ETTCHHHHHTH
T ss_pred ---------------------cEEEEEEEECCCchh-------------hHHHHHHHHhcCCEEEEEE-ECCCHHHHHHH
Confidence 112478899999542 2334456788888555554 44432111
Q ss_pred hHHHH-HHHhhCCCCCcEEEeeccccccC
Q 005171 202 SDALQ-IAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 202 ~~~l~-la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
...+. +.+.....+.++++|+||+|+.+
T Consensus 109 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 109 DRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp HHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred HHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 11222 33444556789999999999975
No 83
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.12 E-value=8.9e-10 Score=119.57 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
..|.|++||.+|||||||+|+|+|..+...+.-.+|+-++.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~--------------------------------------- 218 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKR--------------------------------------- 218 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCE---------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEE---------------------------------------
Confidence 57889999999999999999999987522222222322211
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc--cch-
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL--ANS- 202 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~--~~~- 202 (710)
-.+.+.+ ..+.++||||+... .|.++.+.++.. ..++..++ ++++|+++.... ...
T Consensus 219 ------------~~i~~~g---~~v~l~DT~G~i~~----lp~~lve~f~~t-l~~~~~aD-~il~VvD~s~~~~~~~~~ 277 (364)
T 2qtf_A 219 ------------YAIPINN---RKIMLVDTVGFIRG----IPPQIVDAFFVT-LSEAKYSD-ALILVIDSTFSENLLIET 277 (364)
T ss_dssp ------------EEEEETT---EEEEEEECCCBCSS----CCGGGHHHHHHH-HHGGGGSS-EEEEEEETTSCHHHHHHH
T ss_pred ------------EEEEECC---EEEEEEeCCCchhc----CCHHHHHHHHHH-HHHHHhCC-EEEEEEECCCCcchHHHH
Confidence 1122222 35789999997542 234444455554 45778887 566666655432 111
Q ss_pred --HHHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 203 --DALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 203 --~~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
.+..+++.+...+.++|+|.||+|+.+.+
T Consensus 278 ~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 278 LQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp HHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred HHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 12355666665678999999999998653
No 84
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.12 E-value=8.6e-11 Score=112.83 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=70.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||+|+|++..+.+......+.. +.
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--------------~~-------------------------- 50 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA--------------FF-------------------------- 50 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCS--------------EE--------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeE--------------EE--------------------------
Confidence 34579999999999999999999887633221110000 00
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH-
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA- 204 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~- 204 (710)
...+.+. .....+.||||||.. .++.+...|++.++.+|+ |.+++....-...
T Consensus 51 -----------~~~~~~~-~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 104 (181)
T 2efe_B 51 -----------SQTLAVN-DATVKFEIWDTAGQE-------------RYHSLAPMYYRGAAAAII-VFDVTNQASFERAK 104 (181)
T ss_dssp -----------EEEEEET-TEEEEEEEEECCCSG-------------GGGGGTHHHHTTCSEEEE-EEETTCHHHHHHHH
T ss_pred -----------EEEEEEC-CEEEEEEEEeCCCCh-------------hhhhhhHHHhccCCEEEE-EEECCCHHHHHHHH
Confidence 0001110 011368999999943 233456678899985554 5555443222222
Q ss_pred --HHHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 --LQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 --l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+..+......+.++++|+||+|+.+.
T Consensus 105 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 105 KWVQELQAQGNPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 23333333446889999999999753
No 85
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.11 E-value=4.7e-10 Score=110.75 Aligned_cols=117 Identities=20% Similarity=0.219 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.+ ...++... .+.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~-------------~~~--------------------------- 67 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGV-------------DFT--------------------------- 67 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC------------------------CEE---------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcce-------------EEE---------------------------
Confidence 4689999999999999999999887521 11110000 000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---H
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---D 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~ 203 (710)
...+.+.+ ....+.||||||.. .++.+...|++.++++|+++ ++.....-. .
T Consensus 68 ----------~~~~~~~~-~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~iilv~-D~~~~~s~~~~~~ 122 (201)
T 2hup_A 68 ----------MKTLEIQG-KRVKLQIWDTAGQE-------------RFRTITQSYYRSANGAILAY-DITKRSSFLSVPH 122 (201)
T ss_dssp ----------EEEEEETT-EEEEEEEECCTTCG-------------GGHHHHHHHHTTCSEEEEEE-ETTBHHHHHTHHH
T ss_pred ----------EEEEEECC-EEEEEEEEECCCcH-------------hHHHHHHHHHhhCCEEEEEE-ECCCHHHHHHHHH
Confidence 00111110 11368999999953 34556778999998655554 444322111 2
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
++..+......+.++++|+||+|+.+
T Consensus 123 ~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 123 WIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHhcCCCCCEEEEEECCcccc
Confidence 23334444455789999999999975
No 86
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.10 E-value=9.9e-10 Score=106.92 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=69.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
-.+|+|+|..++|||||+|+|++..+.+ ...+++... +.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~-------------~~--------------------------- 60 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNE-DMIPTVGFN-------------MR--------------------------- 60 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEE-------------EE---------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCC-ccCCCCcee-------------EE---------------------------
Confidence 3579999999999999999999877531 111111000 00
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (710)
.+ .. ....+.||||||.. .++.+...|+++++++|++ .++.....-.....
T Consensus 61 ------------~~--~~-~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v-~D~~~~~s~~~~~~ 111 (188)
T 1zd9_A 61 ------------KI--TK-GNVTIKLWDIGGQP-------------RFRSMWERYCRGVSAIVYM-VDAADQEKIEASKN 111 (188)
T ss_dssp ------------EE--EE-TTEEEEEEEECCSH-------------HHHTTHHHHHTTCSEEEEE-EETTCGGGHHHHHH
T ss_pred ------------EE--Ee-CCEEEEEEECCCCH-------------hHHHHHHHHHccCCEEEEE-EECCCHHHHHHHHH
Confidence 00 00 12368999999942 4556777899999855554 45543322222222
Q ss_pred HHHhh----CCCCCcEEEeeccccccCc
Q 005171 207 IAGIA----DPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 207 la~~~----dp~g~rtI~VlTK~Dl~~~ 230 (710)
....+ ...+.++++|+||+|+.+.
T Consensus 112 ~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 112 ELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 22222 2257899999999999754
No 87
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.10 E-value=1.4e-10 Score=112.28 Aligned_cols=120 Identities=20% Similarity=0.293 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
...++|+|+|..|+|||||+|+|+|..+.+.....+|..+.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~--------------------------------------- 45 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKK--------------------------------------- 45 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEE---------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccce---------------------------------------
Confidence 34578999999999999999999997642111111111110
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCCeEEEEEecCCCcccch
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANS 202 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~ 202 (710)
...+.+. ...+.||||||........ ..+.+...|+. .++ ++++|.++.. . .
T Consensus 46 ------------~~~~~~~---~~~~~l~Dt~G~~~~~~~~-------~~~~~~~~~~~~~~~~-~~i~v~d~~~-~--~ 99 (188)
T 2wjg_A 46 ------------EGEFEYN---GEKFKVVDLPGVYSLTANS-------IDEIIARDYIINEKPD-LVVNIVDATA-L--E 99 (188)
T ss_dssp ------------EEEEEET---TEEEEEEECCCCSCCSSSS-------HHHHHHHHHHHHHCCS-EEEEEEEGGG-H--H
T ss_pred ------------EEEEEeC---CcEEEEEECCCcCcccccc-------HHHHHHHHHHhccCCC-EEEEEecchh-H--H
Confidence 0011111 1368999999986542111 12233445554 466 5556666543 1 1
Q ss_pred HHHHHHHhhCCCCCcEEEeeccccccC
Q 005171 203 DALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 203 ~~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
....+...+...+.++++|+||+|+..
T Consensus 100 ~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 100 RNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 123344444445789999999999864
No 88
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.10 E-value=2.3e-10 Score=111.80 Aligned_cols=117 Identities=14% Similarity=0.114 Sum_probs=70.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.+... ++.... +.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~-------------~~--------------------------- 61 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNIS-PTIGAS-------------FM--------------------------- 61 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCC-CCSSEE-------------EE---------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcC-CCccee-------------EE---------------------------
Confidence 4679999999999999999999987522111 000000 00
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (710)
...+.+. .....+.||||||.. .+..+...|++.++++|++ .+++....-..
T Consensus 62 ----------~~~~~~~-~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~iilV-~d~~~~~s~~~~~~ 116 (192)
T 2fg5_A 62 ----------TKTVPCG-NELHKFLIWDTAGQE-------------RFHSLAPMYYRGSAAAVIV-YDITKQDSFYTLKK 116 (192)
T ss_dssp ----------EEEEECS-SSEEEEEEEEECCSG-------------GGGGGTHHHHTTCSEEEEE-EETTCTHHHHHHHH
T ss_pred ----------EEEEEeC-CEEEEEEEEcCCCch-------------hhHhhhHHhhccCCEEEEE-EeCCCHHHHHHHHH
Confidence 0000000 012368999999943 2334556788999855554 45443322222
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
++..++...+.+.++++|+||+|+.+
T Consensus 117 ~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 117 WVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHhCCCCCcEEEEEECccccc
Confidence 23344455555789999999999974
No 89
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.09 E-value=1.1e-10 Score=112.70 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=36.7
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---HHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD---ALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~---~l~la~~~dp~g~rtI~VlTK 224 (710)
..+.||||||.. .++.+...|+++++++|+ |.+++....-.. ++..+......+.++++|+||
T Consensus 57 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 122 (183)
T 2fu5_C 57 IKLQIWDTAGQE-------------RFRTITTAYYRGAMGIML-VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNK 122 (183)
T ss_dssp EEEEEEEC----------------------CCTTTTTCSEEEE-EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEcCCCCh-------------hhhhhHHHHHhcCCEEEE-EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 368999999943 334556678889985555 455443222122 223333443457899999999
Q ss_pred ccccCc
Q 005171 225 LDIMDR 230 (710)
Q Consensus 225 ~Dl~~~ 230 (710)
+|+.+.
T Consensus 123 ~Dl~~~ 128 (183)
T 2fu5_C 123 CDVNDK 128 (183)
T ss_dssp --CCSC
T ss_pred ccCCcc
Confidence 999753
No 90
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.09 E-value=2.2e-10 Score=112.49 Aligned_cols=117 Identities=13% Similarity=0.103 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||+++|++..+ +....++|......
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 59 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSA-------------------------------------- 59 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEE--------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEE--------------------------------------
Confidence 456899999999999999999999874 32222222211100
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH--
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD-- 203 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~-- 203 (710)
.+.+. .....+.||||||.... +.+...|+.+++++|++ .+++....-.+
T Consensus 60 -------------~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v-~d~~~~~s~~~~~ 111 (201)
T 2q3h_A 60 -------------VVSVD-GRPVRLQLCDTAGQDEF-------------DKLRPLCYTNTDIFLLC-FSVVSPSSFQNVS 111 (201)
T ss_dssp -------------EEEET-TEEEEEEEEECCCSTTC-------------SSSGGGGGTTCSEEEEE-EETTCHHHHHHHH
T ss_pred -------------EEEEC-CEEEEEEEEECCCCHHH-------------HHHhHhhcCCCcEEEEE-EECCCHHHHHHHH
Confidence 00000 01135889999997532 12334588888855544 45443322222
Q ss_pred --HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 --ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 --~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++..++...+ +.++++|+||+|+.+.
T Consensus 112 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 112 EKWVPEIRCHCP-KAPIILVGTQSDLRED 139 (201)
T ss_dssp HTHHHHHHHHCS-SSCEEEEEECGGGGGC
T ss_pred HHHHHHHHHhCC-CCCEEEEEECHhhhhc
Confidence 2233344333 6899999999999864
No 91
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.09 E-value=2.6e-10 Score=108.14 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
+.+|+|+|..++|||||+|+|++..+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccC
Confidence 45899999999999999999998764
No 92
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.09 E-value=1.7e-10 Score=113.83 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=68.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+|+|..++|||||+|+|++..+. ....+++... +.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~-------------~~---------------------------- 63 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFEN-------------YI---------------------------- 63 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCC-------------CE----------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccce-------------EE----------------------------
Confidence 47999999999999999999998752 2211111100 00
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch----H
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS----D 203 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~----~ 203 (710)
..+.+.+ ....+.||||||... ++.+...|++.++.+|++ .+++....-. .
T Consensus 64 ----------~~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~ 118 (201)
T 2gco_A 64 ----------ADIEVDG-KQVELALWDTAGQED-------------YDRLRPLSYPDTDVILMC-FSIDSPDSLENIPEK 118 (201)
T ss_dssp ----------EEEEETT-EEEEEEEECCCCSGG-------------GTTTGGGGCTTCSEEEEE-EETTCHHHHHHHHHT
T ss_pred ----------EEEEECC-EEEEEEEEECCCchh-------------HHHHHHHhcCCCCEEEEE-EECCCHHHHHHHHHH
Confidence 0011100 113689999999532 223445688889855554 4444321111 2
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
++..++...+ +.++++|+||+|+.+..
T Consensus 119 ~~~~~~~~~~-~~piilv~nK~Dl~~~~ 145 (201)
T 2gco_A 119 WTPEVKHFCP-NVPIILVGNKKDLRQDE 145 (201)
T ss_dssp HHHHHHHHST-TCCEEEEEECGGGTTCH
T ss_pred HHHHHHHhCC-CCCEEEEEecHHhhcCc
Confidence 2334444433 68999999999998653
No 93
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.08 E-value=2.4e-10 Score=109.99 Aligned_cols=117 Identities=16% Similarity=0.086 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+++|++..+.+ ...+++......
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~--------------------------------------- 44 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPG-EYIPTVFDNYSA--------------------------------------- 44 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCS-SCCCCSCCEEEE---------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCC-CcCCcccceeEE---------------------------------------
Confidence 3579999999999999999999876532 211111111000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (710)
.+.+.+ ....+.||||||... ++.+...|++.++++|++ .+++....-.+
T Consensus 45 ------------~~~~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~ 97 (186)
T 1mh1_A 45 ------------NVMVDG-KPVNLGLWDTAGQED-------------YDRLRPLSYPQTDVSLIC-FSLVSPASFENVRA 97 (186)
T ss_dssp ------------EEEETT-EEEEEEEECCCCSGG-------------GTTTGGGGCTTCSEEEEE-EETTCHHHHHHHHH
T ss_pred ------------EEEECC-EEEEEEEEECCCCHh-------------HHHHHHHhccCCcEEEEE-EECCChhhHHHHHH
Confidence 000100 113588999999643 233445688888855554 45443222111
Q ss_pred -HHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 204 -ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 204 -~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
++..++...+ +.++++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~-~~piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 98 KWYPEVRHHCP-NTPIILVGTKLDLRDDK 125 (186)
T ss_dssp THHHHHHHHST-TSCEEEEEECHHHHTCH
T ss_pred HHHHHHHHhCC-CCCEEEEeEcccccccc
Confidence 2334444444 68999999999998653
No 94
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.08 E-value=4e-10 Score=109.94 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=69.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+|+|..++|||||+++|++..+ +....+++......
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~---------------------------------------- 57 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAV---------------------------------------- 57 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEE----------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEE----------------------------------------
Confidence 4799999999999999999998865 22222222111100
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc--ch--H
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA--NS--D 203 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~--~~--~ 203 (710)
.+.+. .....+.||||||..+. +.+...|+++++++|++ .++..... .. .
T Consensus 58 -----------~~~~~-~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~ 111 (194)
T 2atx_A 58 -----------SVTVG-GKQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLIC-FSVVNPASFQNVKEE 111 (194)
T ss_dssp -----------EEESS-SCEEEEEEECCCCSSSS-------------TTTGGGGCTTCSEEEEE-EETTCHHHHHHHHHT
T ss_pred -----------EEEEC-CEEEEEEEEECCCCcch-------------hHHHHHhcCCCCEEEEE-EECCCHHHHHHHHHH
Confidence 00000 01135899999996532 23445688889855554 44443321 11 2
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
++..++...+ +.++++|+||+|+.+..
T Consensus 112 ~~~~~~~~~~-~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 112 WVPELKEYAP-NVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp HHHHHHHHST-TCCEEEEEECTTSTTCH
T ss_pred HHHHHHHhCC-CCCEEEEEEChhhcccc
Confidence 2334444433 68999999999998653
No 95
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.08 E-value=7.1e-11 Score=116.37 Aligned_cols=118 Identities=17% Similarity=0.185 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||+|+|++..+.. ...+++...... .....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~-------------~~~~~-------------------- 68 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSE-GYDPTVENTYSK-------------IVTLG-------------------- 68 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS-CCCCCSEEEEEE-------------EEC----------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCC-CCCCccceEEEE-------------EEEEC--------------------
Confidence 45689999999999999999999987632 222222111100 00000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
.....+.||||||.... ..+...|++.++.+|+++ +++....-....
T Consensus 69 -------------------~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~ 115 (201)
T 3oes_A 69 -------------------KDEFHLHLVDTAGQDEY-------------SILPYSFIIGVHGYVLVY-SVTSLHSFQVIE 115 (201)
T ss_dssp ---------------------CEEEEEEEECCCCTT-------------CCCCGGGTTTCCEEEEEE-ETTCHHHHHHHH
T ss_pred -------------------CEEEEEEEEECCCccch-------------HHHHHHHHhcCCEEEEEE-eCCCHHHHHHHH
Confidence 01135899999996532 123446888888555554 444322222222
Q ss_pred HHHHhh----CCCCCcEEEeeccccccCc
Q 005171 206 QIAGIA----DPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 206 ~la~~~----dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+...+ ...+.++++|+||+|+.+.
T Consensus 116 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 116 SLYQKLHEGHGKTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp HHHHHHHC-----CCCEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccCccc
Confidence 233332 2346899999999999753
No 96
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.08 E-value=8.6e-10 Score=106.19 Aligned_cols=122 Identities=21% Similarity=0.217 Sum_probs=70.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
.+|+|||.+|+|||||+|+|+|..+..+...+ +|+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~---------------------------------------- 44 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR---------------------------------------- 44 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEE----------------------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceee----------------------------------------
Confidence 47999999999999999999998642122111 1111100
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN--SDA 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~--~~~ 204 (710)
-.+.+.+ ..+.+|||||+.+.. ..+....-.....|++.++.+ ++|.++....+. ..+
T Consensus 45 -----------~~~~~~~---~~~~l~Dt~G~~~~~-----~~~~~~~~~~~~~~~~~ad~~-i~v~D~~~~~s~~~~~~ 104 (172)
T 2gj8_A 45 -----------EHIHIDG---MPLHIIDTAGLREAS-----DEVERIGIERAWQEIEQADRV-LFMVDGTTTDAVDPAEI 104 (172)
T ss_dssp -----------EEEEETT---EEEEEEECCCCSCCS-----SHHHHHHHHHHHHHHHTCSEE-EEEEETTTCCCCSHHHH
T ss_pred -----------EEEEECC---eEEEEEECCCcccch-----hHHHHHHHHHHHHHHHhCCEE-EEEEECCCCCCHHHHHH
Confidence 0111111 247899999986431 112211112234678888854 455555433222 223
Q ss_pred HHHHHhhCCCCCcEEEeeccccccC
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
+..+....+.+.++|+|+||+|+.+
T Consensus 105 ~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 105 WPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp CHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred HHHHHHhcccCCCEEEEEECccCCc
Confidence 3444444455789999999999964
No 97
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.08 E-value=3.4e-10 Score=107.43 Aligned_cols=113 Identities=16% Similarity=0.105 Sum_probs=68.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.... +|.... .
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~t~~~~------------~---------------------------- 43 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVTTI---PTIGFN------------V---------------------------- 43 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCCC---CCSSEE------------E----------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCcC---CcCccc------------e----------------------------
Confidence 468999999999999999999987652111 111000 0
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (710)
..+.+. ...+.||||||... ++.+...|++.++++|+ |.+++....-.....
T Consensus 44 -----------~~~~~~---~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~-v~d~~~~~s~~~~~~ 95 (171)
T 1upt_A 44 -----------ETVTYK---NLKFQVWDLGGLTS-------------IRPYWRCYYSNTDAVIY-VVDSCDRDRIGISKS 95 (171)
T ss_dssp -----------EEEEET---TEEEEEEEECCCGG-------------GGGGGGGGCTTCSEEEE-EEETTCCTTHHHHHH
T ss_pred -----------EEEEEC---CEEEEEEECCCChh-------------hhHHHHHHhccCCEEEE-EEECCCHHHHHHHHH
Confidence 011111 23689999999642 23445678889985554 455544322222222
Q ss_pred HHH-hhC---CCCCcEEEeeccccccCc
Q 005171 207 IAG-IAD---PDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 207 la~-~~d---p~g~rtI~VlTK~Dl~~~ 230 (710)
... .+. ..+.++++|+||+|+.+.
T Consensus 96 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 96 ELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp HHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 222 222 257899999999999764
No 98
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.08 E-value=5.2e-10 Score=111.58 Aligned_cols=117 Identities=16% Similarity=0.168 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+ +....+++......
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~--------------------------------------- 73 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYMV--------------------------------------- 73 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEE---------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEEE---------------------------------------
Confidence 45799999999999999999999875 22221111111000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (710)
.+.+.+ ....+.||||||.. .++.+...|+..++++|++ .+++....-..
T Consensus 74 ------------~~~~~~-~~~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~ 126 (214)
T 2j1l_A 74 ------------NLQVKG-KPVHLHIWDTAGQD-------------DYDRLRPLFYPDASVLLLC-FDVTSPNSFDNIFN 126 (214)
T ss_dssp ------------EEEETT-EEEEEEEEEC----------------------------CEEEEEEE-EETTCHHHHHHHHH
T ss_pred ------------EEEECC-EEEEEEEEECCCch-------------hhhHHHHHHhccCCEEEEE-EECcCHHHHHHHHH
Confidence 001100 11358999999943 3445666788899855554 45443222111
Q ss_pred -HHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 204 -ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 204 -~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
++..++... .+.++++|+||+|+.+..
T Consensus 127 ~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 127 RWYPEVNHFC-KKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp THHHHHHHHC-SSCCEEEEEECGGGGSCH
T ss_pred HHHHHHHHhC-CCCCEEEEEEChhhhccc
Confidence 223333333 358899999999998653
No 99
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.08 E-value=1.3e-09 Score=105.90 Aligned_cols=69 Identities=12% Similarity=0.119 Sum_probs=42.7
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chHH----HHHHHhh--CCCCCcEE
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLA--NSDA----LQIAGIA--DPDGYRTI 219 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~--~~~~----l~la~~~--dp~g~rtI 219 (710)
..+.||||||... ++.+...|+++++++|++ .++..... +.+. ..+..++ ...+.+++
T Consensus 74 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v-~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~pii 139 (198)
T 3t1o_A 74 TRFHLYTVPGQVF-------------YNASRKLILRGVDGIVFV-ADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIV 139 (198)
T ss_dssp EEEEEEECCSCCS-------------CSHHHHHHTTTCCEEEEE-EECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEE
T ss_pred eEEEEEeCCChHH-------------HHHHHHHHHhcCCEEEEE-EECCcchhhHhHHHHHHHHHHHHhhccccCCCCEE
Confidence 3589999999643 234556799999855554 45442211 1111 2233333 23478999
Q ss_pred EeeccccccCc
Q 005171 220 GIITKLDIMDR 230 (710)
Q Consensus 220 ~VlTK~Dl~~~ 230 (710)
+|+||+|+.+.
T Consensus 140 lv~NK~Dl~~~ 150 (198)
T 3t1o_A 140 IQVNKRDLPDA 150 (198)
T ss_dssp EEEECTTSTTC
T ss_pred EEEEchhcccc
Confidence 99999999753
No 100
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.08 E-value=2.3e-10 Score=111.80 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||+|+|++..+ +....+++...... .
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~-------------~------------------------ 63 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSH-------------V------------------------ 63 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEE-------------E------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEE-------------E------------------------
Confidence 345799999999999999999999875 22222211111000 0
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--- 202 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--- 202 (710)
+.+. .....+.||||||.. .+..+...|+++++++|++ .+++....-.
T Consensus 64 --------------~~~~-~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~ 114 (194)
T 3reg_A 64 --------------MKYK-NEEFILHLWDTAGQE-------------EYDRLRPLSYADSDVVLLC-FAVNNRTSFDNIS 114 (194)
T ss_dssp --------------EEET-TEEEEEEEEEECCSG-------------GGTTTGGGGCTTCSEEEEE-EETTCHHHHHHHH
T ss_pred --------------EEEC-CEEEEEEEEECCCcH-------------HHHHHhHhhccCCcEEEEE-EECCCHHHHHHHH
Confidence 0000 011357999999943 2334556788999855554 4444332211
Q ss_pred -HHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 203 -DALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 203 -~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.++..++... .+.++++|+||+|+.+.
T Consensus 115 ~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 115 TKWEPEIKHYI-DTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp HTHHHHHHHHC-TTSEEEEEEECGGGCCT
T ss_pred HHHHHHHHHhC-CCCCEEEEEEChhhccC
Confidence 1233334333 35899999999999853
No 101
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.08 E-value=5.1e-10 Score=115.73 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=71.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
.++|+|+|.+|+|||||+|+|+|..+. ++.- .+|...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~----------------------------------------- 42 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEK----------------------------------------- 42 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEE-----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEE-----------------------------------------
Confidence 467999999999999999999998652 2111 111110
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHh--cCCCeEEEEEecCCCcccchH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYI--KQPSCLILAVTPANSDLANSD 203 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi--~~~~~iIL~V~~a~~d~~~~~ 203 (710)
....+... ...+.||||||..+.... ..+ ..+...|+ ..++ ++++|+++.....
T Consensus 43 ------------~~~~~~~~-~~~~~l~DtpG~~~~~~~----~~~---e~v~~~~~~~~~~d-~ii~V~D~t~~~~--- 98 (258)
T 3a1s_A 43 ------------KEGVFTYK-GYTINLIDLPGTYSLGYS----SID---EKIARDYLLKGDAD-LVILVADSVNPEQ--- 98 (258)
T ss_dssp ------------EEEEEEET-TEEEEEEECCCCSSCCSS----SHH---HHHHHHHHHHSCCS-EEEEEEETTSCHH---
T ss_pred ------------EEEEEEEC-CeEEEEEECCCcCccCCC----CHH---HHHHHHHHhhcCCC-EEEEEeCCCchhh---
Confidence 01111111 146899999998754311 112 23445566 4676 5556666654322
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.+.+..++...+.++++|+||+|+.+
T Consensus 99 ~~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 99 SLYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 23455555556899999999999864
No 102
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.08 E-value=2.4e-10 Score=119.13 Aligned_cols=121 Identities=22% Similarity=0.289 Sum_probs=70.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
-+.|+++|.+|+|||||+|+|+|..+ .++.-+ +|..+. .+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~------------~~-------------------------- 43 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERK------------EG-------------------------- 43 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEE------------EE--------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEE------------EE--------------------------
Confidence 36799999999999999999999864 332211 111110 00
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHh--cCCCeEEEEEecCCCcccchH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYI--KQPSCLILAVTPANSDLANSD 203 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi--~~~~~iIL~V~~a~~d~~~~~ 203 (710)
.+... ...+.||||||+.+.........+++ .+...|+ ..++. +++|+++.....
T Consensus 44 ---------------~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~e---~i~~~~~~~~~~d~-ii~VvD~~~~~~--- 100 (274)
T 3i8s_A 44 ---------------QFSTT-DHQVTLVDLPGTYSLTTISSQTSLDE---QIACHYILSGDADL-LINVVDASNLER--- 100 (274)
T ss_dssp ---------------EEECS-SCEEEEEECCCCSCSCC----CCHHH---HHHHHHHHHTCCSE-EEEEEEGGGHHH---
T ss_pred ---------------EEEeC-CCceEEEECcCCCccccccccCCHHH---HHHHHHHhhcCCCE-EEEEecCCChHH---
Confidence 01111 13589999999876542111112222 3344555 57774 555555554221
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.+.+..++...+.++|+|+||+|+.+
T Consensus 101 ~~~~~~~l~~~~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 101 NLYLTLQLLELGIPCIVALNMLDIAE 126 (274)
T ss_dssp HHHHHHHHHHHTCCEEEEEECHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECccchh
Confidence 23344444444789999999999964
No 103
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.08 E-value=3.7e-10 Score=111.05 Aligned_cols=118 Identities=18% Similarity=0.221 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||+|+|++..+.+.... ++. ..+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~-------------~~~--------------------------- 65 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISA-TLG-------------VDF--------------------------- 65 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------C---------------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCC-Ccc-------------cee---------------------------
Confidence 457899999999999999999998875211110 000 000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--- 202 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--- 202 (710)
....+.+.+ ....+.||||||... ++.+...|++.++++|++ .++.....-.
T Consensus 66 ----------~~~~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv-~d~~~~~s~~~~~ 120 (199)
T 2p5s_A 66 ----------QMKTLIVDG-ERTVLQLWDTAGQER-------------FRSIAKSYFRKADGVLLL-YDVTCEKSFLNIR 120 (199)
T ss_dssp ----------EEEEEEETT-EEEEEEEEECTTCTT-------------CHHHHHHHHHHCSEEEEE-EETTCHHHHHTHH
T ss_pred ----------EEEEEEECC-EEEEEEEEECCCCcc-------------hhhhHHHHHhhCCEEEEE-EECCChHHHHHHH
Confidence 000111111 113589999999542 345667788888855555 4544332211
Q ss_pred HHHHHHHhhCCCCCcEEEeeccccccC
Q 005171 203 DALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 203 ~~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.++..++.....+.++++|+||+|+.+
T Consensus 121 ~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 121 EWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp HHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECccccc
Confidence 223444555555789999999999964
No 104
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.08 E-value=2.6e-09 Score=115.52 Aligned_cols=125 Identities=22% Similarity=0.329 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCC-CccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~-g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (710)
...+.|+|||.+|+|||||+|+|+|..+ ..+. ..+|+.+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~------------------------------------ 207 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVG------------------------------------ 207 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEE------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEE------------------------------------
Confidence 4678999999999999999999999863 1211 1122221100
Q ss_pred hhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc----c
Q 005171 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD----L 199 (710)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d----~ 199 (710)
. +.. ....+.+|||||+...+... ...++ ...+..+...++ .+|+|.++... +
T Consensus 208 ---------------~--~~~-~~~~~~l~Dt~G~~~~~~~~-~~~~~---~~~~~~~~~~ad-~illV~D~s~~~~~~~ 264 (357)
T 2e87_A 208 ---------------Q--FED-GYFRYQIIDTPGLLDRPISE-RNEIE---KQAILALRYLGN-LIIYIFDPSEHCGFPL 264 (357)
T ss_dssp ---------------E--EEE-TTEEEEEEECTTTSSSCSTT-SCHHH---HHHHHGGGGTCS-EEEEEECTTCTTSSCH
T ss_pred ---------------E--EEe-cCceEEEEeCCCccccchhh-hhHHH---HHHHHHHHhcCC-EEEEEEeCCccccCCH
Confidence 0 000 01358999999987643222 11222 223334444566 55556665432 2
Q ss_pred cc-hHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 200 AN-SDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 200 ~~-~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.. ...+..+....+ +.++|+|+||+|+.+.
T Consensus 265 ~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 265 EEQIHLFEEVHGEFK-DLPFLVVINKIDVADE 295 (357)
T ss_dssp HHHHHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence 22 122333333333 7899999999999764
No 105
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.07 E-value=2.1e-10 Score=113.57 Aligned_cols=115 Identities=15% Similarity=0.151 Sum_probs=66.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.+|+|+|..++|||||+|+|++..+.. ...+++......
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~---------------------------------------- 64 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVA---------------------------------------- 64 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEE----------------------------------------
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEE----------------------------------------
Confidence 479999999999999999999987521 111111110000
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc--cch--H
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL--ANS--D 203 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~--~~~--~ 203 (710)
.+.+.+ ....+.||||||.... ..+...|+..++++|+++ +++... ... .
T Consensus 65 -----------~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~ 118 (207)
T 2fv8_A 65 -----------DIEVDG-KQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCF-SVDSPDSLENIPEK 118 (207)
T ss_dssp -----------EEEETT-EEEEEEEEECTTCTTC-------------TTTGGGGCTTCCEEEEEE-ETTCHHHHHHHHHT
T ss_pred -----------EEEECC-EEEEEEEEECCCcHHH-------------HHHHHhhcCCCCEEEEEE-ECCCHHHHHHHHHH
Confidence 001100 1136899999996432 233446888888555554 444321 111 2
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++..++...+ +.++++|+||+|+.+.
T Consensus 119 ~~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 119 WVPEVKHFCP-NVPIILVANKKDLRSD 144 (207)
T ss_dssp HHHHHHHHST-TCCEEEEEECGGGGGC
T ss_pred HHHHHHHhCC-CCCEEEEEEchhhhcc
Confidence 2334444332 6899999999999864
No 106
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.07 E-value=5.2e-10 Score=111.01 Aligned_cols=118 Identities=17% Similarity=0.163 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
..++|+|+|..++|||||+++|++..+.+... +|... +.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~--~~~~~-------------~~-------------------------- 44 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT--SITDS-------------SA-------------------------- 44 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC--CCSCE-------------EE--------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC--Cccee-------------eE--------------------------
Confidence 35789999999999999999999887532221 11110 00
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHH-HHHHHhcCCCeEEEEEecCCCccc-chH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRT-MIMSYIKQPSCLILAVTPANSDLA-NSD 203 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~-lv~~yi~~~~~iIL~V~~a~~d~~-~~~ 203 (710)
.+.+.+.....+.||||||.. .++. +...|++.++++|++ .++..... ...
T Consensus 45 -------------~~~~~~~~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~~i~v-~d~~~~~~~~~~ 97 (214)
T 2fh5_B 45 -------------IYKVNNNRGNSLTLIDLPGHE-------------SLRFQLLDRFKSSARAVVFV-VDSAAFQREVKD 97 (214)
T ss_dssp -------------EEECSSTTCCEEEEEECCCCH-------------HHHHHHHHHHGGGEEEEEEE-EETTTHHHHHHH
T ss_pred -------------EEEecCCCccEEEEEECCCCh-------------hHHHHHHHHHHhhCCEEEEE-EECCCcCHHHHH
Confidence 011111112468999999953 3344 677889999855555 45443111 111
Q ss_pred HHHHHH----h--hCCCCCcEEEeeccccccCcc
Q 005171 204 ALQIAG----I--ADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 204 ~l~la~----~--~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
...... . ....+.++++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 98 VAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 222221 1 234468999999999998643
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.07 E-value=5.8e-10 Score=106.35 Aligned_cols=116 Identities=22% Similarity=0.308 Sum_probs=67.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
+.|+++|..|+|||||+|+|+|..+ +.+.-+ +|+.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~------------------------------------------ 40 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEK------------------------------------------ 40 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCC------------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceee------------------------------------------
Confidence 5799999999999999999999764 222110 01000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCCeEEEEEecCCCcccchHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~~~ 204 (710)
....+.+. ...+.+|||||..+..... ..+.+...|+. +++ ++++|.++.... ..
T Consensus 41 ---------~~~~~~~~---~~~l~i~Dt~G~~~~~~~~-------~~~~~~~~~~~~~~~~-~~i~v~D~~~~~---~~ 97 (165)
T 2wji_A 41 ---------KEGEFEYN---GEKFKVVDLPGVYSLTANS-------IDEIIARDYIINEKPD-LVVNIVDATALE---RN 97 (165)
T ss_dssp ---------CEEEEEET---TEEEEEEECCCCSCSSSSS-------HHHHHHHHHHHHHCCS-EEEEEEETTCHH---HH
T ss_pred ---------eEEEEEEC---CcEEEEEECCCcccCCCcc-------hhHHHHHHHHhcCCCC-EEEEEecCCchh---Hh
Confidence 00011111 1358999999986542111 22345556665 677 555666655421 11
Q ss_pred HHHHHhhCCCCCcEEEeeccccccC
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
..+..++...+.++++|.||+|+..
T Consensus 98 ~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 98 LYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEchHhcc
Confidence 2233333334789999999999864
No 108
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.07 E-value=1.7e-10 Score=112.26 Aligned_cols=115 Identities=20% Similarity=0.230 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+.+....+++. ...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~---------------------------------------- 59 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSI---------------------------------------- 59 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEE----------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeE----------------------------------------
Confidence 467999999999999999999998632332221111 100
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH--
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (710)
..+.+. ...+.||||||... ++.+...|+++++++| +|.+++....-.+.
T Consensus 60 -----------~~~~~~---~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii-~v~d~~~~~s~~~~~~ 111 (190)
T 2h57_A 60 -----------EKFKSS---SLSFTVFDMSGQGR-------------YRNLWEHYYKEGQAII-FVIDSSDRLRMVVAKE 111 (190)
T ss_dssp -----------EEEECS---SCEEEEEEECCSTT-------------TGGGGGGGGGGCSEEE-EEEETTCHHHHHHHHH
T ss_pred -----------EEEEEC---CEEEEEEECCCCHH-------------HHHHHHHHHhcCCEEE-EEEECCCHHHHHHHHH
Confidence 011111 13699999999542 2344567889998555 55555543211221
Q ss_pred -H-HHHHhhCC--CCCcEEEeeccccccCc
Q 005171 205 -L-QIAGIADP--DGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 -l-~la~~~dp--~g~rtI~VlTK~Dl~~~ 230 (710)
+ .+.+.... .+.++++|+||+|+.+.
T Consensus 112 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 112 ELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp HHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred HHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 1 22222222 47899999999999753
No 109
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.07 E-value=5.6e-10 Score=108.34 Aligned_cols=114 Identities=15% Similarity=0.128 Sum_probs=67.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||+|+|++..+... ..+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--------------~~t~~------------------------------- 49 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT--------------SPTIG------------------------------- 49 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEE--------------ECCSC-------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcC--------------cCCCc-------------------------------
Confidence 457899999999999999999998765210 00000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
+. ...+.+. ...+.||||||.. .++.+...|+++++++|++ .+++....-....
T Consensus 50 -------~~--~~~~~~~---~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v-~d~~~~~s~~~~~ 103 (187)
T 1zj6_A 50 -------SN--VEEIVIN---NTRFLMWDIGGQE-------------SLRSSWNTYYTNTEFVIVV-VDSTDRERISVTR 103 (187)
T ss_dssp -------SS--CEEEEET---TEEEEEEECCC-----------------CGGGHHHHTTCCEEEEE-EETTCTTTHHHHH
T ss_pred -------cc--eEEEEEC---CEEEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEE-EeCCCHHHHHHHH
Confidence 00 0011111 1468999999964 2334556788999855554 4554432222222
Q ss_pred HHHHhh----CCCCCcEEEeeccccccCc
Q 005171 206 QIAGIA----DPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 206 ~la~~~----dp~g~rtI~VlTK~Dl~~~ 230 (710)
.....+ ...+.++++|+||+|+.+.
T Consensus 104 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 104 EELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp HHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 222222 1257899999999999753
No 110
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.06 E-value=2.1e-10 Score=113.60 Aligned_cols=119 Identities=15% Similarity=0.085 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
.-.+|+|+|..|+|||||+++|++..+... ...++...... .
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~-------------~------------------------ 70 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGE-YIPTVFDNYSA-------------N------------------------ 70 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC--CCCCSEEEEEE-------------E------------------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCC-cCCeecceeEE-------------E------------------------
Confidence 456899999999999999999998765322 11111111000 0
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH--
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD-- 203 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~-- 203 (710)
+.+.+ ....+.||||||... +..+...|++.++++|++ .+++....-.+
T Consensus 71 --------------~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~ 121 (204)
T 4gzl_A 71 --------------VMVDG-KPVNLGLWDTAGLED-------------YDRLRPLSYPQTDVFLIC-FSLVSPASFENVR 121 (204)
T ss_dssp --------------EECC--CEEEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEE-EETTCHHHHHHHH
T ss_pred --------------EEECC-EEEEEEEEECCCchh-------------hHHHHHHHhccCCEEEEE-EECCCHHHHHHHH
Confidence 00000 113578999999642 234455688899855555 45443322222
Q ss_pred --HHHHHHhhCCCCCcEEEeeccccccCccc
Q 005171 204 --ALQIAGIADPDGYRTIGIITKLDIMDRGT 232 (710)
Q Consensus 204 --~l~la~~~dp~g~rtI~VlTK~Dl~~~~~ 232 (710)
.+..++... .+.++++|+||+|+.+...
T Consensus 122 ~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 122 AKWYPEVRHHC-PNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp HTHHHHHHHHC-SSCCEEEEEECHHHHTCHH
T ss_pred HHHHHHHHHhC-CCCCEEEEEechhhccchh
Confidence 233334433 3689999999999986543
No 111
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.06 E-value=3.6e-10 Score=106.86 Aligned_cols=68 Identities=10% Similarity=0.100 Sum_probs=42.1
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---HHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l~la~~~dp~g~rtI~VlTK 224 (710)
..+.||||||... ++.+...|++.++++|++ .+++....-... +..+........++++|+||
T Consensus 55 ~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK 120 (170)
T 1r2q_A 55 VKFEIWDTAGQER-------------YHSLAPMYYRGAQAAIVV-YDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120 (170)
T ss_dssp EEEEEEEECCSGG-------------GGGGHHHHHTTCSEEEEE-EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEeCCCcHH-------------hhhhhHHhccCCCEEEEE-EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 3689999999532 344566788999855554 455433221221 22233333446788999999
Q ss_pred ccccC
Q 005171 225 LDIMD 229 (710)
Q Consensus 225 ~Dl~~ 229 (710)
+|+.+
T Consensus 121 ~Dl~~ 125 (170)
T 1r2q_A 121 ADLAN 125 (170)
T ss_dssp GGGGG
T ss_pred ccCcc
Confidence 99965
No 112
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.05 E-value=1.2e-10 Score=116.10 Aligned_cols=68 Identities=18% Similarity=0.122 Sum_probs=42.5
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHHHHHHhhCCCCCcEEEeeccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l~la~~~dp~g~rtI~VlTK~ 225 (710)
.+.||||||.... ..+...|+..++++|+ |.+++....-. .++..+....+.+.++++|+||+
T Consensus 62 ~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (218)
T 4djt_A 62 KFNVWDTAGQEKK-------------AVLKDVYYIGASGAIL-FFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKI 127 (218)
T ss_dssp EEEEEEECSGGGT-------------SCCCHHHHTTCSEEEE-EEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECT
T ss_pred EEEEEecCCchhh-------------chHHHHHhhcCCEEEE-EEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 5899999996532 1233457888885555 45554332222 22344555555678999999999
Q ss_pred cccCc
Q 005171 226 DIMDR 230 (710)
Q Consensus 226 Dl~~~ 230 (710)
|+.+.
T Consensus 128 Dl~~~ 132 (218)
T 4djt_A 128 DIKNR 132 (218)
T ss_dssp TCC--
T ss_pred CCccc
Confidence 99754
No 113
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.05 E-value=1.4e-10 Score=111.00 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
...+|+|+|..++|||||+|+|++..+
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~ 31 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF 31 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC
Confidence 345799999999999999999998765
No 114
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.05 E-value=9e-10 Score=113.88 Aligned_cols=124 Identities=16% Similarity=0.229 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
.-.+|+|+|..|+|||||+|+|+|..+...+.. .+|..+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~------------------------------------ 78 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVS------------------------------------ 78 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEE------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEE------------------------------------
Confidence 456899999999999999999999876433332 1222221110
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCCeEEEEEecCCC-cccc
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANS-DLAN 201 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~-d~~~ 201 (710)
+.. . ...++||||||+.+.... .+...+.+.+++. .++ ++|+|.+.+. .+..
T Consensus 79 ---------------~~~--~-~~~l~liDTpG~~~~~~~------~~~~~~~i~~~l~~~~~~-~il~V~~~d~~~~~~ 133 (262)
T 3def_A 79 ---------------RTM--G-GFTINIIDTPGLVEAGYV------NHQALELIKGFLVNRTID-VLLYVDRLDVYAVDE 133 (262)
T ss_dssp ---------------EEE--T-TEEEEEEECCCSEETTEE------CHHHHHHHHHHTTTCEEC-EEEEEEESSCSCCCH
T ss_pred ---------------EEE--C-CeeEEEEECCCCCCcccc------hHHHHHHHHHHHhcCCCC-EEEEEEcCCCCCCCH
Confidence 011 0 136999999998654211 1233444555554 345 5555644432 3333
Q ss_pred h--HHHHHHHhhCCC--CCcEEEeeccccccCc
Q 005171 202 S--DALQIAGIADPD--GYRTIGIITKLDIMDR 230 (710)
Q Consensus 202 ~--~~l~la~~~dp~--g~rtI~VlTK~Dl~~~ 230 (710)
. ..++.++...+. ..++++|+||+|+.++
T Consensus 134 ~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 134 LDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 3 234444443222 2489999999999754
No 115
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.04 E-value=1.1e-09 Score=107.22 Aligned_cols=116 Identities=15% Similarity=0.175 Sum_probs=68.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||+|+|++..+.+... +++... +..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~~-------------~~~------------------------- 67 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD-PTLEST-------------YRH------------------------- 67 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC-TTCCEE-------------EEE-------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccC-CCCCce-------------EEE-------------------------
Confidence 35689999999999999999999987632211 111100 000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH--
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD-- 203 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~-- 203 (710)
.+.+. .....+.||||||... ..+...|++.++++|++ .+++....-.+
T Consensus 68 -------------~~~~~-~~~~~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iilv-~D~~~~~s~~~~~ 118 (196)
T 2atv_A 68 -------------QATID-DEVVSMEILDTAGQED--------------TIQREGHMRWGEGFVLV-YDITDRGSFEEVL 118 (196)
T ss_dssp -------------EEEET-TEEEEEEEEECCCCCC--------------CHHHHHHHHHCSEEEEE-EETTCHHHHHTHH
T ss_pred -------------EEEEC-CEEEEEEEEECCCCCc--------------ccchhhhhccCCEEEEE-EECcCHHHHHHHH
Confidence 00000 0113589999999653 23455688888855555 44443211111
Q ss_pred -HHHHHHh-hCCCCCcEEEeeccccccC
Q 005171 204 -ALQIAGI-ADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 -~l~la~~-~dp~g~rtI~VlTK~Dl~~ 229 (710)
.+..+.. ....+.++++|+||+|+.+
T Consensus 119 ~~~~~i~~~~~~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 119 PLKNILDEIKKPKNVTLILVGNKADLDH 146 (196)
T ss_dssp HHHHHHHHHHTTSCCCEEEEEECGGGGG
T ss_pred HHHHHHHHhhCCCCCcEEEEEECccccc
Confidence 1222332 3345789999999999975
No 116
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.04 E-value=1.9e-10 Score=110.71 Aligned_cols=117 Identities=18% Similarity=0.201 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
.++|+|+|..++|||||+|+|++..+. ....+++...... .....+
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~-------------~~~~~~-------------------- 51 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFV-DSYDPTIENTFTK-------------LITVNG-------------------- 51 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEE-------------EEEETT--------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCCccccEEE-------------EEEECC--------------------
Confidence 468999999999999999999977652 2222222211100 000000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH--
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (710)
....+.||||||.... +.+...|++.++++|+++ +......-...
T Consensus 52 -------------------~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~ 98 (181)
T 3t5g_A 52 -------------------QEYHLQLVDTAGQDEY-------------SIFPQTYSIDINGYILVY-SVTSIKSFEVIKV 98 (181)
T ss_dssp -------------------EEEEEEEEECCCCCTT-------------CCCCGGGTTTCSEEEEEE-ETTCHHHHHHHHH
T ss_pred -------------------EEEEEEEEeCCCchhh-------------hHHHHHHHhcCCEEEEEE-ECCCHHHHHHHHH
Confidence 1135899999996543 123345788888655554 44432111111
Q ss_pred -H-HHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 -L-QIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 -l-~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+ .+.+.....+.++++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 99 IHGKLLDMVGKVQIPIMLVGNKKDLHME 126 (181)
T ss_dssp HHHHHHHHC----CCEEEEEECTTCTTT
T ss_pred HHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 1 2334444557899999999999643
No 117
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.04 E-value=5.1e-10 Score=107.73 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||+|+|++..+..... +..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------------t~~------------------------------- 51 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKP--------------TIG------------------------------- 51 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECS--------------STT-------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCC--------------cCc-------------------------------
Confidence 45689999999999999999999765411110 000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
+. ...+.+. ...+.+|||||.... +.+...|+.+++. +++|.+++....-....
T Consensus 52 -------~~--~~~~~~~---~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~ 105 (183)
T 1moz_A 52 -------FN--VETLSYK---NLKLNVWDLGGQTSI-------------RPYWRCYYADTAA-VIFVVDSTDKDRMSTAS 105 (183)
T ss_dssp -------CC--EEEEEET---TEEEEEEEEC----C-------------CTTGGGTTTTEEE-EEEEEETTCTTTHHHHH
T ss_pred -------cc--eEEEEEC---CEEEEEEECCCCHhH-------------HHHHHHHhccCCE-EEEEEECCCHHHHHHHH
Confidence 00 0011111 146899999997532 2234567888885 44555554432222223
Q ss_pred HHHHhhC----CCCCcEEEeeccccccCc
Q 005171 206 QIAGIAD----PDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 206 ~la~~~d----p~g~rtI~VlTK~Dl~~~ 230 (710)
.....+. ..+.++++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 106 KELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp HHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 3333332 357899999999999753
No 118
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.04 E-value=2.2e-10 Score=123.27 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
+|.|+|||.+|||||||||+|++..
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC
Confidence 6889999999999999999999875
No 119
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.03 E-value=6.4e-10 Score=107.59 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||+|+|++.. +....+++. ..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~t~~-~~---------------------------------------- 53 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTISPTLG-FN---------------------------------------- 53 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCCCSS-EE----------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCcccccCc-cc----------------------------------------
Confidence 45689999999999999999999876 222211111 00
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
...+.+ ....+.||||||.. ..+.+...|+++++++|+ |.+++....-.+..
T Consensus 54 -----------~~~~~~---~~~~~~~~Dt~G~~-------------~~~~~~~~~~~~~d~ii~-v~d~~~~~s~~~~~ 105 (186)
T 1ksh_A 54 -----------IKTLEH---RGFKLNIWDVGGQK-------------SLRSYWRNYFESTDGLIW-VVDSADRQRMQDCQ 105 (186)
T ss_dssp -----------EEEEEE---TTEEEEEEEECCSH-------------HHHTTGGGGCTTCSEEEE-EEETTCGGGHHHHH
T ss_pred -----------eEEEEE---CCEEEEEEECCCCH-------------hHHHHHHHHhcCCCEEEE-EEECcCHHHHHHHH
Confidence 001111 12468999999953 345566788999985554 55554432222222
Q ss_pred HHHHhh----CCCCCcEEEeeccccccCc
Q 005171 206 QIAGIA----DPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 206 ~la~~~----dp~g~rtI~VlTK~Dl~~~ 230 (710)
.....+ ...+.++++|+||+|+.+.
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 106 RELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 222222 2246899999999999764
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.03 E-value=9.9e-10 Score=114.50 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCC-ccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGND-ICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g-~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
.++|+++|.+|+|||||+|+|+|..+. ++.- .+|..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~----------------------------------------- 40 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVER----------------------------------------- 40 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSC-----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEE-----------------------------------------
Confidence 467999999999999999999997632 2211 111111
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCCeEEEEEecCCCcccchH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSD 203 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~~ 203 (710)
....+.. ...+.||||||..+..... .+ +.+...|+. .++ ++++|+++.... .
T Consensus 41 ------------~~~~~~~--~~~l~l~DtpG~~~~~~~~----~~---e~v~~~~~~~~~~d-~vi~V~D~t~~e---~ 95 (272)
T 3b1v_A 41 ------------KSGLVKK--NKDLEIQDLPGIYSMSPYS----PE---AKVARDYLLSQRAD-SILNVVDATNLE---R 95 (272)
T ss_dssp ------------EEEECTT--CTTEEEEECCCCSCSSCSS----HH---HHHHHHHHHTTCCS-EEEEEEEGGGHH---H
T ss_pred ------------EEEEEec--CCeEEEEECCCcCccCCCC----hH---HHHHHHHHhcCCCC-EEEEEecCCchH---h
Confidence 0111111 2369999999987542111 11 334556775 576 555566654321 1
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccC
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
.+.+..++...+.++++|+||+|+..
T Consensus 96 ~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 96 NLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp HHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 23344444445789999999999864
No 121
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.03 E-value=4.1e-10 Score=112.98 Aligned_cols=117 Identities=17% Similarity=0.205 Sum_probs=67.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+........+.. +
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~--------------~---------------------------- 50 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVE--------------F---------------------------- 50 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCS--------------E----------------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce--------------e----------------------------
Confidence 4689999999999999999999987632211100000 0
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH--
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA-- 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~-- 204 (710)
....+.+.+ ....+.||||||.... ..+...|++.++.+ ++|.++.....-.+.
T Consensus 51 ---------~~~~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~v-ilV~D~~~~~s~~~~~~ 106 (223)
T 3cpj_B 51 ---------ATRTLEIEG-KRIKAQIWDTAGQERY-------------RAITSAYYRGAVGA-LIVYDISKSSSYENCNH 106 (223)
T ss_dssp ---------EEEEEEETT-EEEEEEEECCTTTTTT-------------TCCCGGGTTTCCEE-EEEEC-CCHHHHHHHHH
T ss_pred ---------EEEEEEECC-EEEEEEEEECCCccch-------------hhhHHHHhccCCEE-EEEEeCCCHHHHHHHHH
Confidence 000111110 1136899999995432 23445688888854 455555543222222
Q ss_pred -HHHHHhhCCCCCcEEEeeccccccC
Q 005171 205 -LQIAGIADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 -l~la~~~dp~g~rtI~VlTK~Dl~~ 229 (710)
+..++.....+.++++|+||+|+.+
T Consensus 107 ~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 107 WLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp HHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred HHHHHHHhCCCCCeEEEEEECccccc
Confidence 3334444455789999999999975
No 122
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.02 E-value=7.2e-10 Score=108.60 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=66.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
.-.+|+|+|..++|||||+|+|++..+... .+|... .
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~---~~t~~~--------------~-------------------------- 64 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGF--------------N-------------------------- 64 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEE---EEETTE--------------E--------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcccc---CCcCce--------------e--------------------------
Confidence 346899999999999999999998765210 111100 0
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
...+.+ ....+.||||||.. .++.+...|+++++++|+ |.+++....-....
T Consensus 65 -----------~~~~~~---~~~~~~i~Dt~G~~-------------~~~~~~~~~~~~~d~iil-v~D~~~~~s~~~~~ 116 (192)
T 2b6h_A 65 -----------VETVEY---KNICFTVWDVGGQD-------------KIRPLWRHYFQNTQGLIF-VVDSNDRERVQESA 116 (192)
T ss_dssp -----------EEEEEE---TTEEEEEEECC------------------CTTHHHHHHTCCEEEE-EEETTCGGGHHHHH
T ss_pred -----------EEEEEE---CCEEEEEEECCCCH-------------hHHHHHHHHhccCCEEEE-EEECCCHHHHHHHH
Confidence 001111 12468999999964 234456678889985555 45554432222222
Q ss_pred HHHHhh----CCCCCcEEEeeccccccCc
Q 005171 206 QIAGIA----DPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 206 ~la~~~----dp~g~rtI~VlTK~Dl~~~ 230 (710)
.....+ ...+.++++|+||+|+.+.
T Consensus 117 ~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 117 DELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 222222 2246899999999999754
No 123
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.01 E-value=5.1e-10 Score=108.17 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=68.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+-.. ..+..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--------------~~t~~-------------------------------- 54 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEVVHT--------------SPTIG-------------------------------- 54 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSCEEE--------------ECCSS--------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCcc--------------CCcCc--------------------------------
Confidence 45799999999999999999999865100 00000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (710)
+. ...+.+. ...+.||||||..+ ++.+...|+++++++| +|.+++....-.....
T Consensus 55 ------~~--~~~~~~~---~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii-~v~D~~~~~s~~~~~~ 109 (181)
T 2h17_A 55 ------SN--VEEIVIN---NTRFLMWDIGGQES-------------LRSSWNTYYTNTEFVI-VVVDSTDRERISVTRE 109 (181)
T ss_dssp ------SS--CEEEEET---TEEEEEEEESSSGG-------------GTCGGGGGGTTCCEEE-EEEETTCTTTHHHHHH
T ss_pred ------ee--eEEEEEC---CEEEEEEECCCCHh-------------HHHHHHHHhccCCEEE-EEEECCCHHHHHHHHH
Confidence 00 0111221 14699999999643 2344567889998555 4555554322222222
Q ss_pred HHHhh-C---CCCCcEEEeeccccccCc
Q 005171 207 IAGIA-D---PDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 207 la~~~-d---p~g~rtI~VlTK~Dl~~~ 230 (710)
....+ . ..+.++++|+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 110 ELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp HHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 22222 2 357899999999999753
No 124
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.01 E-value=4.5e-10 Score=109.64 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
...+|+|+|..++|||||+|+|++..+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~ 33 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTF 33 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCC
Confidence 346899999999999999999998765
No 125
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.00 E-value=2.1e-09 Score=104.62 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
..-+|+|+|..++|||||+|.+++..|
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445799999999999999999998876
No 126
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.99 E-value=2.4e-10 Score=109.79 Aligned_cols=117 Identities=18% Similarity=0.200 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||+++|++..+ +....+++.. .+....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~-------------~~~~~~----------------------- 49 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFD-------------NFSANV----------------------- 49 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C-----------------------CBCCC-----------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeee-------------eEEEEE-----------------------
Confidence 346899999999999999999998764 2211111100 000000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--- 202 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--- 202 (710)
.+. .....+.||||||... ++.+...|+++++++|++ .+++....-.
T Consensus 50 ---------------~~~-~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~ 99 (182)
T 3bwd_D 50 ---------------VVN-GATVNLGLWDTAGQED-------------YNRLRPLSYRGADVFILA-FSLISKASYENVS 99 (182)
T ss_dssp ---------------C--------CEEECCCC-CT-------------TTTTGGGGGTTCSEEEEE-EETTCHHHHHHHH
T ss_pred ---------------EEC-CEEEEEEEEECCCChh-------------hhhhHHhhccCCCEEEEE-EECCCHHHHHHHH
Confidence 000 0113588999999542 223455688888855554 4544322211
Q ss_pred -HHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 203 -DALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 203 -~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.++..++...+ +.++++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 100 KKWIPELKHYAP-GVPIVLVGTKLDLRDD 127 (182)
T ss_dssp HTHHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHHhCC-CCCEEEEEechhhhcC
Confidence 12334444433 6899999999999764
No 127
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.99 E-value=4.5e-10 Score=111.28 Aligned_cols=117 Identities=16% Similarity=0.182 Sum_probs=69.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||+++|++..+ +....+++......
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 48 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSA-------------------------------------- 48 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEE--------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEE--------------------------------------
Confidence 345799999999999999999998765 22222211111000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--- 202 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--- 202 (710)
.+.+. .....+.||||||.... +.+...|+++++.+|+++ +......-.
T Consensus 49 -------------~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~-d~~~~~s~~~~~ 100 (212)
T 2j0v_A 49 -------------NVAVD-GQIVNLGLWDTAGQEDY-------------SRLRPLSYRGADIFVLAF-SLISKASYENVL 100 (212)
T ss_dssp -------------EEECS-SCEEEEEEECCCCCCCC-------------CC--CGGGTTCSEEEEEE-ETTCHHHHHHHH
T ss_pred -------------EEEEC-CEEEEEEEEECCCcHHH-------------HHHHHhhccCCCEEEEEE-ECCCHHHHHHHH
Confidence 00010 11236899999997532 123446888998555554 444322111
Q ss_pred -HHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 203 -DALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 203 -~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.++..++...+ +.++++|+||+|+.+.
T Consensus 101 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 101 KKWMPELRRFAP-NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp HTHHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHHhCC-CCCEEEEEeCHHhhhC
Confidence 22334444443 6899999999999754
No 128
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.97 E-value=1.5e-09 Score=109.28 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=45.5
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-ccc-hHHHHHHHhhCCCCCcEEEeeccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-LAN-SDALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-~~~-~~~l~la~~~dp~g~rtI~VlTK~ 225 (710)
..|.||||+|-. .++.+...|++.++++|++....+.. +.+ ..++..++...+...++|+|.||+
T Consensus 62 v~l~iwDtaGqe-------------~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~ 128 (216)
T 4dkx_A 62 IRLQLWDTAGLE-------------RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128 (216)
T ss_dssp EEEEEECCSCTT-------------TCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECT
T ss_pred EEEEEEECCCch-------------hhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeecc
Confidence 468999999943 34567778999999666665443321 111 223444444445568999999999
Q ss_pred cccC
Q 005171 226 DIMD 229 (710)
Q Consensus 226 Dl~~ 229 (710)
|+.+
T Consensus 129 Dl~~ 132 (216)
T 4dkx_A 129 DLAD 132 (216)
T ss_dssp TCGG
T ss_pred chHh
Confidence 9865
No 129
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.97 E-value=9.8e-10 Score=108.27 Aligned_cols=114 Identities=15% Similarity=0.183 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
....+|+|+|..|||||||+++|++..+-.. .+|..+ .
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~---~~t~~~------------~--------------------------- 60 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH---VPTLHP------------T--------------------------- 60 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC---------CCCCC------------S---------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCcc---CCCCCc------------e---------------------------
Confidence 4456899999999999999999998764110 001000 0
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
...+.+.+ ..+.+|||||.. ..+.+...|++.++++|++ .++.....-...
T Consensus 61 ------------~~~~~~~~---~~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v-~D~~~~~s~~~~ 111 (198)
T 1f6b_A 61 ------------SEELTIAG---MTFTTFDLGGHI-------------QARRVWKNYLPAINGIVFL-VDCADHERLLES 111 (198)
T ss_dssp ------------CEEEEETT---EEEEEEEECC-----------------CCGGGGGGGGCSEEEEE-EETTCGGGHHHH
T ss_pred ------------eEEEEECC---EEEEEEECCCcH-------------hhHHHHHHHHhcCCEEEEE-EECCCHHHHHHH
Confidence 01112211 468999999953 2334556788899855555 454433222222
Q ss_pred HHHHHhh----CCCCCcEEEeeccccccC
Q 005171 205 LQIAGIA----DPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 205 l~la~~~----dp~g~rtI~VlTK~Dl~~ 229 (710)
......+ ...+.++++|+||+|+.+
T Consensus 112 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 112 KEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp HHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 2222222 235789999999999975
No 130
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.97 E-value=2.8e-09 Score=104.56 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||++.|.|. +.+. . |..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~-~---~~~------------------------------------------ 51 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK-MSPN-E---TLF------------------------------------------ 51 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC-CCGG-G---GGG------------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc-CCCc-c---eee------------------------------------------
Confidence 4668999999999999999999986 3222 0 000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHH---HHHhcCCCeEEEEEecCCCcccc-
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMI---MSYIKQPSCLILAVTPANSDLAN- 201 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv---~~yi~~~~~iIL~V~~a~~d~~~- 201 (710)
..+....+...+.+.....+.||||||..+- ..+. ..|+++++++|++ .+++.....
T Consensus 52 -----~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~i~v-~d~~~~~~~~ 112 (196)
T 3llu_A 52 -----LESTNKIYKDDISNSSFVNFQIWDFPGQMDF-------------FDPTFDYEMIFRGTGALIYV-IDAQDDYMEA 112 (196)
T ss_dssp -----CCCCCSCEEEEECCTTSCCEEEEECCSSCCT-------------TCTTCCHHHHHHTCSEEEEE-EETTSCCHHH
T ss_pred -----eccccceeeeeccCCCeeEEEEEECCCCHHH-------------HhhhhhcccccccCCEEEEE-EECCCchHHH
Confidence 0001111222222223357999999996432 1222 4688889865555 455443211
Q ss_pred -hHHHHHHHhh--CCCCCcEEEeeccccccCc
Q 005171 202 -SDALQIAGIA--DPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 202 -~~~l~la~~~--dp~g~rtI~VlTK~Dl~~~ 230 (710)
.....++..+ ...+.++++|.||+|+.+.
T Consensus 113 ~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 113 LTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 1222333433 2347899999999999864
No 131
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.97 E-value=7.3e-10 Score=108.00 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
.-+|+|+|..++|||||+|+|++..+
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~ 46 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF 46 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC
Confidence 34799999999999999999998875
No 132
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.96 E-value=7.9e-10 Score=110.43 Aligned_cols=117 Identities=14% Similarity=0.071 Sum_probs=70.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||+++|++..+.. ...+++......
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~-~~~~t~~~~~~~-------------------------------------- 66 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPE-TYVPTVFENYTA-------------------------------------- 66 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEE--------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCC-CcCCeeeeeEEE--------------------------------------
Confidence 45679999999999999999999987632 211111111000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc----
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---- 201 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---- 201 (710)
.+.+.+ ....+.||||||... ++.+...|++.++++|+++ +++....-
T Consensus 67 -------------~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~ 118 (214)
T 3q3j_B 67 -------------CLETEE-QRVELSLWDTSGSPY-------------YDNVRPLCYSDSDAVLLCF-DISRPETVDSAL 118 (214)
T ss_dssp -------------EEEC---CEEEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEE-ETTCTHHHHHHH
T ss_pred -------------EEEECC-EEEEEEEEECCCCHh-------------HHHHHHHHcCCCeEEEEEE-ECcCHHHHHHHH
Confidence 000000 113589999999542 2345567889998655555 44433221
Q ss_pred hHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 202 SDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 202 ~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
..++..++...+ +.++++|.||+|+.+.
T Consensus 119 ~~~~~~i~~~~~-~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 119 KKWRTEILDYCP-STRVLLIGCKTDLRTD 146 (214)
T ss_dssp THHHHHHHHHCT-TSEEEEEEECGGGGGC
T ss_pred HHHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 223444455443 6899999999999764
No 133
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.96 E-value=1.8e-09 Score=107.26 Aligned_cols=116 Identities=12% Similarity=0.090 Sum_probs=68.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+. ....+++......
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~--------------------------------------- 67 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTA--------------------------------------- 67 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEE---------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEE---------------------------------------
Confidence 357999999999999999999998762 2211111100000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch----
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---- 202 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---- 202 (710)
.+.+. .....+.||||||... +..+...|++.++++|+++ +++....-.
T Consensus 68 ------------~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~ilv~-D~~~~~s~~~~~~ 120 (205)
T 1gwn_A 68 ------------SFEID-TQRIELSLWDTSGSPY-------------YDNVRPLSYPDSDAVLICF-DISRPETLDSVLK 120 (205)
T ss_dssp ------------EEESS-SSEEEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEE-ETTCHHHHHHHHH
T ss_pred ------------EEEEC-CEEEEEEEEeCCCcHh-------------hhHHHHhhccCCCEEEEEE-ECCCHHHHHHHHH
Confidence 00000 0123689999999542 2234456888888555554 444322111
Q ss_pred HHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 203 DALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 203 ~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.++..++...+ +.++++|+||+|+.+.
T Consensus 121 ~~~~~i~~~~~-~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 121 KWKGEIQEFCP-NTKMLLVGCKSDLRTD 147 (205)
T ss_dssp THHHHHHHHCT-TCEEEEEEECGGGGGC
T ss_pred HHHHHHHHHCC-CCCEEEEEechhhccc
Confidence 12233344433 5899999999999754
No 134
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.96 E-value=1.1e-09 Score=106.12 Aligned_cols=116 Identities=15% Similarity=0.128 Sum_probs=67.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+ +....+ |-... +..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~-t~~~~------------~~~-------------------------- 46 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCF-PENYVP-TVFEN------------YTA-------------------------- 46 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCC-CSEEE------------EEE--------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCC-cccee------------EEE--------------------------
Confidence 45799999999999999999999875 222111 11100 000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (710)
.+.+. .....+.||||||... ++.+...|+..++++|++ .+++....-..
T Consensus 47 ------------~~~~~-~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v-~d~~~~~s~~~~~~ 99 (184)
T 1m7b_A 47 ------------SFEID-TQRIELSLWDTSGSPY-------------YDNVRPLSYPDSDAVLIC-FDISRPETLDSVLK 99 (184)
T ss_dssp ------------EEECS-SCEEEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEE-EETTCHHHHHHHHH
T ss_pred ------------EEEEC-CEEEEEEEEECCCChh-------------hhhhHHhhcCCCcEEEEE-EECCCHHHHHHHHH
Confidence 00000 0113589999999542 223344588888855555 45443222111
Q ss_pred -HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 -ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 -~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++..++...+ +.++++|+||+|+.+.
T Consensus 100 ~~~~~i~~~~~-~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 100 KWKGEIQEFCP-NTKMLLVGCKSDLRTD 126 (184)
T ss_dssp THHHHHHHHCT-TCEEEEEEECGGGGGC
T ss_pred HHHHHHHHHCC-CCCEEEEEEcchhhcc
Confidence 2233344433 6899999999999754
No 135
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.95 E-value=2.7e-09 Score=103.39 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
-..++|+|+|..++|||||+++|++..+... .| +..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-------~~-------t~g------------------------------ 49 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-------TP-------TQG------------------------------ 49 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-------EE-------ETT------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-------cC-------cCC------------------------------
Confidence 3467899999999999999999998754100 00 000
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
+. ...+.+. ...+.+|||||.. .++.+...|+..++++|+++ ++.....-...
T Consensus 50 --------~~--~~~~~~~---~~~l~i~Dt~G~~-------------~~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~ 102 (181)
T 1fzq_A 50 --------FN--IKSVQSQ---GFKLNVWDIGGQR-------------KIRPYWRSYFENTDILIYVI-DSADRKRFEET 102 (181)
T ss_dssp --------EE--EEEEEET---TEEEEEEECSSCG-------------GGHHHHHHHHTTCSEEEEEE-ETTCGGGHHHH
T ss_pred --------eE--EEEEEEC---CEEEEEEECCCCH-------------HHHHHHHHHhCCCCEEEEEE-ECcCHHHHHHH
Confidence 00 0011111 2468999999953 24456678999998655554 44432222222
Q ss_pred HHHHHhh----CCCCCcEEEeeccccccCc
Q 005171 205 LQIAGIA----DPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~----dp~g~rtI~VlTK~Dl~~~ 230 (710)
......+ ...+.++++|+||+|+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 103 GQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp HHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 2222222 2346899999999999754
No 136
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.94 E-value=2.9e-09 Score=104.67 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
...+|+|||..++|||||+|+|+|..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999998764
No 137
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.94 E-value=2.4e-09 Score=106.56 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=25.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
-..+.|+|+|..|+|||||+|+|++..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999999875
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.94 E-value=8e-10 Score=122.11 Aligned_cols=123 Identities=20% Similarity=0.265 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCc-cccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDI-CTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~-~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
..+.|+|+|..++|||||+|+|++..+.+.+... +|..+
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~---------------------------------------- 72 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDP---------------------------------------- 72 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCC----------------------------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeee----------------------------------------
Confidence 4678999999999999999999998763332211 11111
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
....+++ .....+.||||||+.+...-.+ . . .+.+..|+..++. +|+|+++......
T Consensus 73 -----------~~~~~~~--~~~~~l~liDTpG~~d~~~l~~-~----~-~~~~~~~l~~aD~-vllVvD~~~~~~~--- 129 (423)
T 3qq5_A 73 -----------VYKSMEL--HPIGPVTLVDTPGLDDVGELGR-L----R-VEKARRVFYRADC-GILVTDSAPTPYE--- 129 (423)
T ss_dssp -----------CEEEEEE--TTTEEEEEEECSSTTCCCTTCC-C----C-HHHHHHHHTSCSE-EEEECSSSCCHHH---
T ss_pred -----------EEEEEEE--CCCCeEEEEECcCCCcccchhH-H----H-HHHHHHHHhcCCE-EEEEEeCCChHHH---
Confidence 0011111 1112689999999875432111 1 1 1224568888884 5555566322222
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
..+.+.+...+.++|+|+||+|+.+..
T Consensus 130 ~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 130 DDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp HHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred HHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 333444444478999999999998654
No 139
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.94 E-value=8.9e-10 Score=106.99 Aligned_cols=114 Identities=19% Similarity=0.144 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||+|+|++..+.+.. +|...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---~t~~~----------------------------------------- 56 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTV---PTVGV----------------------------------------- 56 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEEC---SSTTC-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcC---CCCce-----------------------------------------
Confidence 3568999999999999999999887652110 01000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
. ...+.+. ...+.||||||..+.. .+...|+++++++|+ |.+++....-....
T Consensus 57 --------~--~~~~~~~---~~~~~~~Dt~G~~~~~-------------~~~~~~~~~~d~ii~-v~d~~~~~s~~~~~ 109 (189)
T 2x77_A 57 --------N--LETLQYK---NISFEVWDLGGQTGVR-------------PYWRCYFSDTDAVIY-VVDSTDRDRMGVAK 109 (189)
T ss_dssp --------C--EEEEEET---TEEEEEEEECCSSSSC-------------CCCSSSSTTCCEEEE-EEETTCCTTHHHHH
T ss_pred --------E--EEEEEEC---CEEEEEEECCCCHhHH-------------HHHHHHhhcCCEEEE-EEeCCCHHHHHHHH
Confidence 0 0011111 2468999999975431 123357888885555 55554332222222
Q ss_pred H----HHHhhCCCCCcEEEeeccccccCc
Q 005171 206 Q----IAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 206 ~----la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
. +.+.....+.++++|+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 110 HELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp HHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 2 222222347899999999999764
No 140
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.93 E-value=1e-09 Score=119.12 Aligned_cols=122 Identities=18% Similarity=0.176 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
-.++|++||.+|+|||||+|+|+|........-.||+.|+.-.+. .+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~-------------~~-------------------- 117 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIR-------------YK-------------------- 117 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEE-------------ET--------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEE-------------eC--------------------
Confidence 357899999999999999999999875444455677777432211 00
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
...++|+||||+...+..+ ...-..+...+++++ +|++|++++.....-+.+
T Consensus 118 ---------------------~~~i~l~D~pGl~~~a~~~------~~~g~~~l~~i~~ad-~il~vvD~~~p~~~~~~i 169 (376)
T 4a9a_A 118 ---------------------GAKIQMLDLPGIIDGAKDG------RGRGKQVIAVARTCN-LLFIILDVNKPLHHKQII 169 (376)
T ss_dssp ---------------------TEEEEEEECGGGCCC-----------CHHHHHHHHHHHCS-EEEEEEETTSHHHHHHHH
T ss_pred ---------------------CcEEEEEeCCCccCCchhh------hHHHHHHHHHHHhcC-ccccccccCccHHHHHHH
Confidence 1258999999998654221 112233456677887 777788887654433322
Q ss_pred -HHHHhhCC--CCCcEEEeecccccc
Q 005171 206 -QIAGIADP--DGYRTIGIITKLDIM 228 (710)
Q Consensus 206 -~la~~~dp--~g~rtI~VlTK~Dl~ 228 (710)
.-+..++. ..++.++|+||.|.-
T Consensus 170 ~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 170 EKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHhhHhhccCChhhhhhHhhhh
Confidence 11222221 246788999999963
No 141
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.93 E-value=5.1e-09 Score=119.33 Aligned_cols=128 Identities=14% Similarity=0.143 Sum_probs=69.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhh
Q 005171 44 TIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQT 123 (710)
Q Consensus 44 ~~~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t 123 (710)
...-.+|++||.+|||||||+|+|+|..+- ....+++..........+.. .. ...
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~-~~~~~t~g~~~~~~~~~~~~-----~v-~~~------------------ 92 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD-PKESQTHGLNVVTKQAPNIK-----GL-END------------------ 92 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSG-----GG-TTC------------------
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEecccccc-----ce-eec------------------
Confidence 345568999999999999999999998762 11111111111100000000 00 000
Q ss_pred hhhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH
Q 005171 124 DKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203 (710)
Q Consensus 124 ~~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~ 203 (710)
+ ......+.||||||.... ..+...|+++++ ++++|+++...-....
T Consensus 93 ----~---------------~~~~~~~~i~Dt~G~e~~-------------~~~~~~~l~~~d-~ii~V~D~s~~~~~~~ 139 (535)
T 3dpu_A 93 ----D---------------ELKECLFHFWDFGGQEIM-------------HASHQFFMTRSS-VYMLLLDSRTDSNKHY 139 (535)
T ss_dssp ----S---------------TTTTCEEEEECCCSCCTT-------------TTTCHHHHHSSE-EEEEEECGGGGGGHHH
T ss_pred ----C---------------CCceEEEEEEECCcHHHH-------------HHHHHHHccCCc-EEEEEEeCCCchhHHH
Confidence 0 001236899999994322 123345777787 5566666654433333
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++..++...+ +.++|+|+||+|+.+.
T Consensus 140 ~~~~l~~~~~-~~pvilV~NK~Dl~~~ 165 (535)
T 3dpu_A 140 WLRHIEKYGG-KSPVIVVMNKIDENPS 165 (535)
T ss_dssp HHHHHHHHSS-SCCEEEEECCTTTCTT
T ss_pred HHHHHHHhCC-CCCEEEEEECCCcccc
Confidence 4455555544 5899999999999753
No 142
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.93 E-value=2.6e-09 Score=114.34 Aligned_cols=111 Identities=19% Similarity=0.274 Sum_probs=65.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhcC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAG 128 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~g 128 (710)
+|+|+|..++|||||+|+|++..+... .+|... .+.
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~~~~---~pT~~~------------~~~----------------------------- 202 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGF------------NVE----------------------------- 202 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCCEEE---EEETTE------------EEE-----------------------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCCCCc---ccccce------------EEE-----------------------------
Confidence 799999999999999999998875211 011111 000
Q ss_pred CCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH----
Q 005171 129 GNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---- 204 (710)
Q Consensus 129 ~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---- 204 (710)
.+.. ....++||||||-. .+..+...|++.++.+|+ |.+++....-...
T Consensus 203 ----------~~~~---~~~~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~vil-V~D~~~~~s~~~~~~~~ 255 (329)
T 3o47_A 203 ----------TVEY---KNISFTVWDVGGQD-------------KIRPLWRHYFQNTQGLIF-VVDSNDRERVNEAREEL 255 (329)
T ss_dssp ----------EEEE---TTEEEEEEECC------------------CCSHHHHHTTEEEEEE-EEETTCSSSHHHHHHHH
T ss_pred ----------EEec---CcEEEEEEECCCCH-------------hHHHHHHHHhccCCEEEE-EEECCchHHHHHHHHHH
Confidence 0111 11368999999932 344566788999985554 5555432221121
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
..+.+.....+.++|+|+||+|+.+.
T Consensus 256 ~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 256 MRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHhhhccCCCeEEEEEECccCCcc
Confidence 12222222237899999999999754
No 143
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.92 E-value=2e-09 Score=105.19 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
.-.+|+|+|..++|||||+++|++..+-... +|..+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~---~t~~~~---------------------------------------- 58 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQ---PTWHPT---------------------------------------- 58 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCC---CCCSCE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccc---cCCCCC----------------------------------------
Confidence 4458999999999999999999987652111 111110
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
...+.+.+ ..+.+|||||.... +.+...|++.++++|++ .+++....-....
T Consensus 59 -----------~~~~~~~~---~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v-~d~~~~~s~~~~~ 110 (190)
T 1m2o_B 59 -----------SEELAIGN---IKFTTFDLGGHIQA-------------RRLWKDYFPEVNGIVFL-VDAADPERFDEAR 110 (190)
T ss_dssp -----------EEEEEETT---EEEEEEECCCSGGG-------------TTSGGGGCTTCCEEEEE-EETTCGGGHHHHH
T ss_pred -----------eEEEEECC---EEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEE-EECCChHHHHHHH
Confidence 00111111 46899999996532 23445688889855554 4554332222222
Q ss_pred HHHHh----hCCCCCcEEEeeccccccC
Q 005171 206 QIAGI----ADPDGYRTIGIITKLDIMD 229 (710)
Q Consensus 206 ~la~~----~dp~g~rtI~VlTK~Dl~~ 229 (710)
..... ....+.++++|+||+|+.+
T Consensus 111 ~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 111 VELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp HHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 22222 2235689999999999975
No 144
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.88 E-value=5.2e-11 Score=117.18 Aligned_cols=118 Identities=15% Similarity=0.181 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|+|..++|||||+|+|++..+........|....
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 71 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFK----------------------------------------- 71 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEE-----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEE-----------------------------------------
Confidence 468999999999999999999988753221111110000
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH---
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD--- 203 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~--- 203 (710)
...+.+.+ ....+.||||||.... +.+...|++.++. +++|.++.....-..
T Consensus 72 ----------~~~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~ 126 (199)
T 3l0i_B 72 ----------IRTIELDG-KTIKLQIWDTAGQERF-------------RTITSSYYRGAHG-IIVVYDVTDQESFNNVKQ 126 (199)
T ss_dssp ----------EEEEEETT-EEEEEEEECCTTCTTC-------------CCCSCC--CCCSE-EEECC-CCCSHHHHHHHH
T ss_pred ----------EEEEEECC-EEEEEEEEECCCcHhH-------------HHHHHHHhhcCCE-EEEEEECCCHHHHHHHHH
Confidence 00111100 1136899999995432 1233457888885 455555554322222
Q ss_pred HHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 204 ALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 204 ~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
++..+....+.+.++++|+||+|+.+.
T Consensus 127 ~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 127 WLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp HHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HHHHHHHhccCCCCEEEEEECccCCcc
Confidence 233344444557899999999999753
No 145
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.87 E-value=5.2e-09 Score=118.01 Aligned_cols=113 Identities=18% Similarity=0.137 Sum_probs=69.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
..+|+|||.+|+|||||+|+|++..+.. ..+|.......
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~~~---~~~T~~~~~~~-------------------------------------- 360 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVET-------------------------------------- 360 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCC---CCCCSSEEEEE--------------------------------------
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCC---cCCccceeEEE--------------------------------------
Confidence 3579999999999999999999987421 11222221110
Q ss_pred cCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQ 206 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~ 206 (710)
+. . ....+.||||||... ++.+...|++.++. +|+|.++.....-.+...
T Consensus 361 -------------~~--~-~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~-~i~V~D~~~~~s~~~~~~ 410 (497)
T 3lvq_E 361 -------------VT--Y-KNVKFNVWDVGGQDK-------------IRPLWRHYYTGTQG-LIFVVDCADRDRIDEARQ 410 (497)
T ss_dssp -------------EE--S-SSCEEEEEEECCCGG-------------GSGGGGGGGTTCCE-EEEEEETTCGGGHHHHHH
T ss_pred -------------EE--e-CCEEEEEEECCCcHH-------------HHHHHHHHhccCCE-EEEEEECcchhHHHHHHH
Confidence 00 0 113689999999542 33456679999985 555555554322222222
Q ss_pred HH----HhhCCCCCcEEEeeccccccCc
Q 005171 207 IA----GIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 207 la----~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.. +.....+.++|+|+||+|+.+.
T Consensus 411 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 411 ELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp HHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred HHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 22 2222347899999999999753
No 146
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.35 E-value=3.1e-10 Score=111.93 Aligned_cols=68 Identities=16% Similarity=0.097 Sum_probs=41.7
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH-HHHHhhCCC--CCcEEEeeccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL-QIAGIADPD--GYRTIGIITKL 225 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l-~la~~~dp~--g~rtI~VlTK~ 225 (710)
.+.||||||.. .+..+...|+++++++|+++ +++....-.+.. .+...+... +.++++|+||+
T Consensus 79 ~l~i~Dt~G~~-------------~~~~~~~~~~~~~d~iilv~-D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~ 144 (204)
T 3th5_A 79 NLGLWDTAGQE-------------DYDRLRPLSYPQTDVFLICF-SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 144 (204)
Confidence 57899999953 33456667888888655554 443322222211 222333222 68899999999
Q ss_pred cccCc
Q 005171 226 DIMDR 230 (710)
Q Consensus 226 Dl~~~ 230 (710)
|+.+.
T Consensus 145 Dl~~~ 149 (204)
T 3th5_A 145 DLRDD 149 (204)
Confidence 99764
No 147
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.84 E-value=8.6e-10 Score=110.21 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=41.6
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch---HHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS---DALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~---~~l~la~~~dp~g~rtI~VlTK 224 (710)
..+.||||||... +..+...|+++++++|++ .+++....-. .++..+.... .+.++++|+||
T Consensus 64 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v-~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK 128 (221)
T 3gj0_A 64 IKFNVWDTAGQEK-------------FGGLRDGYYIQAQCAIIM-FDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNK 128 (221)
T ss_dssp EEEEEEEECSGGG-------------TSCCCHHHHTTCCEEEEE-EETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEEC
T ss_pred EEEEEEeCCChHH-------------HhHHHHHHHhcCCEEEEE-EECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 3689999999542 223445688888855554 4544332211 2233333333 26899999999
Q ss_pred ccccCc
Q 005171 225 LDIMDR 230 (710)
Q Consensus 225 ~Dl~~~ 230 (710)
+|+.+.
T Consensus 129 ~Dl~~~ 134 (221)
T 3gj0_A 129 VDIKDR 134 (221)
T ss_dssp TTSSSC
T ss_pred Cccccc
Confidence 999754
No 148
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.83 E-value=1.4e-08 Score=111.57 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=43.5
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---hHHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---SDALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---~~~l~la~~~dp~g~rtI~VlTK 224 (710)
..++||||||.. .+......++..+|.+| +|++++..... .+.+.+++.+.. .++|+|+||
T Consensus 75 ~~~~iiDtPGh~-------------~~~~~~~~~~~~~D~~i-lVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK 138 (403)
T 3sjy_A 75 RRISFIDAPGHE-------------VLMATMLSGAALMDGAI-LVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNK 138 (403)
T ss_dssp EEEEEEECCCCG-------------GGHHHHHHHHTTCSEEE-EEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEEC
T ss_pred ceEEEEECCCcH-------------HHHHHHHHHHhhCCEEE-EEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEEC
Confidence 368999999943 33445567888898554 55556654322 233444554432 579999999
Q ss_pred ccccCc
Q 005171 225 LDIMDR 230 (710)
Q Consensus 225 ~Dl~~~ 230 (710)
+|+.+.
T Consensus 139 ~Dl~~~ 144 (403)
T 3sjy_A 139 VDVVSK 144 (403)
T ss_dssp GGGSCH
T ss_pred ccccch
Confidence 999864
No 149
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.83 E-value=1.2e-08 Score=107.99 Aligned_cols=118 Identities=18% Similarity=0.123 Sum_probs=71.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+|+|..++|||||++.+++..+. .....+|.......
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~------------------------------------- 195 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSAN------------------------------------- 195 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC-CSCCCCSEEEEEEE-------------------------------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC-cccCCcccceeEEE-------------------------------------
Confidence 4578999999999999999999987653 22222222111000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchH--
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD-- 203 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~-- 203 (710)
+.+. .....+.||||||.... ..+...|++.++++|+ |.+++....-.+
T Consensus 196 --------------~~~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~ 246 (332)
T 2wkq_A 196 --------------VMVD-GKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLI-CFSLVSPASFHHVR 246 (332)
T ss_dssp --------------EEET-TEEEEEEEEEECCCGGG-------------TTTGGGGCTTCSEEEE-EEETTCHHHHHHHH
T ss_pred --------------EEEC-CEEEEEEEEeCCCchhh-------------hHHHHHhccCCCEEEE-EEeCCCHHHHHHHH
Confidence 0000 01135779999996432 2445568888985555 455543322222
Q ss_pred --HHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 204 --ALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 204 --~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
.+..++...+ +.++++|+||+|+.+..
T Consensus 247 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~ 275 (332)
T 2wkq_A 247 AKWYPEVRHHCP-NTPIILVGTKLDLRDDK 275 (332)
T ss_dssp HTHHHHHHHHCT-TSCEEEEEECHHHHTCH
T ss_pred HHHHHHHHhhCC-CCcEEEEEEchhccccc
Confidence 2234444444 78999999999997653
No 150
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.80 E-value=6.5e-08 Score=96.81 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
...+|+|||++|+|||||+|+++|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34689999999999999999999854
No 151
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.79 E-value=3.3e-08 Score=111.25 Aligned_cols=146 Identities=19% Similarity=0.228 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|+++|..++|||||+|+|++....-......|-. .... ..|+...++..+.+....+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~------------~~~~----~~g~~~~~~~~~~d~~~~e--- 92 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQ------------RESE----TMGKSSFKFAWIMDQTNEE--- 92 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHC------------C-----------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHH------------HHHH----hcCCCcchhhhhhccchhH---
Confidence 45679999999999999999998762100000000000 0000 0011111111111111111
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-------
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD------- 198 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d------- 198 (710)
...+++-+.....+..+. ..++||||||.. .+......|+..++.+|| |++++..
T Consensus 93 ---~~~GiTi~~~~~~~~~~~-~~~~iiDTPG~~-------------~f~~~~~~~~~~aD~~ll-VvDa~~g~~~~~~~ 154 (483)
T 3p26_A 93 ---RERGVTVSICTSHFSTHR-ANFTIVDAPGHR-------------DFVPNAIMGISQADMAIL-CVDCSTNAFESGFD 154 (483)
T ss_dssp -----CCSSCCCCEEEEECSS-CEEEEECCCCCG-------------GGHHHHHHHHTTCSEEEE-EEECCC------CC
T ss_pred ---hhcCcceEeeeEEEecCC-ceEEEEECCCcH-------------HHHHHHHHhhhhCCEEEE-EEECCCCccccccc
Confidence 112444444445554443 579999999964 234556678899985555 4555543
Q ss_pred ccch--HHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 199 LANS--DALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 199 ~~~~--~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+..+ +.+.+++.+. ..++|+|+||+|+.+.
T Consensus 155 ~~~qt~e~~~~~~~~~--~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 155 LDGQTKEHMLLASSLG--IHNLIIAMNKMDNVDW 186 (483)
T ss_dssp CCHHHHHHHHHHHHTT--CCCEEEEEECGGGGTT
T ss_pred hhhhHHHHHHHHHHcC--CCcEEEEEECcCcccc
Confidence 1112 2233344332 2469999999999863
No 152
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.79 E-value=1.4e-08 Score=107.54 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=44.0
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH---HHHHHhhC--CCCCcEEEee
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA---LQIAGIAD--PDGYRTIGII 222 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~---l~la~~~d--p~g~rtI~Vl 222 (710)
..+.||||||..+ ........+...|+++++++| +|.++.....-.+. ...+..+. ..+.++++|+
T Consensus 52 ~~l~i~Dt~G~~~--------~~~~~~~~~~~~~~~~ad~vi-~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~ 122 (307)
T 3r7w_A 52 MTLNLWDCGGQDV--------FMENYFTKQKDHIFQMVQVLI-HVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122 (307)
T ss_dssp EEEEEEEECCSHH--------HHHHHHTTTHHHHHTTCSEEE-EEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEEEECCCcHH--------HhhhhhhhHHHHHhccCCEEE-EEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4699999999431 112223567778899998555 45555443222221 12222221 2368999999
Q ss_pred ccccccC
Q 005171 223 TKLDIMD 229 (710)
Q Consensus 223 TK~Dl~~ 229 (710)
||+|+.+
T Consensus 123 NK~Dl~~ 129 (307)
T 3r7w_A 123 HKMDLVQ 129 (307)
T ss_dssp ECGGGSC
T ss_pred ecccccc
Confidence 9999986
No 153
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.79 E-value=2e-08 Score=112.93 Aligned_cols=65 Identities=28% Similarity=0.240 Sum_probs=43.6
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--HHHHHHHhhCCCCCcEEEeeccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~~l~la~~~dp~g~rtI~VlTK~ 225 (710)
..++||||||. +.+......++..+|. +++|++++.....+ +.+.+++. .+.+.|+|+||+
T Consensus 73 ~~i~iiDtPGh-------------~~~~~~~~~~~~~aD~-~ilVvda~~g~~~qt~e~l~~~~~---~~ip~IvviNK~ 135 (482)
T 1wb1_A 73 YRITLVDAPGH-------------ADLIRAVVSAADIIDL-ALIVVDAKEGPKTQTGEHMLILDH---FNIPIIVVITKS 135 (482)
T ss_dssp EEEEECCCSSH-------------HHHHHHHHHHTTSCCE-EEEEEETTTCSCHHHHHHHHHHHH---TTCCBCEEEECT
T ss_pred EEEEEEECCCh-------------HHHHHHHHHHHhhCCE-EEEEEecCCCccHHHHHHHHHHHH---cCCCEEEEEECC
Confidence 46999999994 2344556678888985 45555666543322 22344444 467889999999
Q ss_pred cccC
Q 005171 226 DIMD 229 (710)
Q Consensus 226 Dl~~ 229 (710)
|+.+
T Consensus 136 Dl~~ 139 (482)
T 1wb1_A 136 DNAG 139 (482)
T ss_dssp TSSC
T ss_pred Cccc
Confidence 9986
No 154
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.79 E-value=1.1e-08 Score=110.80 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=41.5
Q ss_pred cceEEEeCCCCCcCCCC-CCchHHHHHHHHHHHHHhcCC-------------CeEEEEEecCCCcccchHHHHHHHhhCC
Q 005171 148 LDITLVDLPGITKVPVG-EQPADIEARIRTMIMSYIKQP-------------SCLILAVTPANSDLANSDALQIAGIADP 213 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~-~q~~di~~~i~~lv~~yi~~~-------------~~iIL~V~~a~~d~~~~~~l~la~~~dp 213 (710)
..+++|||||+.+.... +.-..+...+.+....|+... ++++++|.++...+...+ ..+.+.+.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d-~~~~~~l~- 172 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-VAFMKAIH- 172 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHH-HHHHHHTC-
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhH-HHHHHHhc-
Confidence 36999999998543211 000112222333333565533 345556666566666555 45667775
Q ss_pred CCCcEEEeeccccccCc
Q 005171 214 DGYRTIGIITKLDIMDR 230 (710)
Q Consensus 214 ~g~rtI~VlTK~Dl~~~ 230 (710)
.+.++|+|+||+|+...
T Consensus 173 ~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp S-SCEEEEEECCSSSCH
T ss_pred cCCCEEEEEECCCCCCH
Confidence 56899999999999864
No 155
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.77 E-value=5e-09 Score=118.98 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=48.1
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..++||||||..+- ...+..|++.++++ |+|+++......+. ..+.+.+...+.++|+|+||+|+
T Consensus 82 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~a-llVvDa~~g~~~~t-~~~~~~~~~~~iPiivviNK~Dl 146 (528)
T 3tr5_A 82 YLINLLDTPGHADF-------------TEDTYRTLTAVDSA-LMVIDAAKGVEPRT-IKLMEVCRLRHTPIMTFINKMDR 146 (528)
T ss_dssp EEEEEECCCCSTTC-------------CHHHHHGGGGCSEE-EEEEETTTCSCHHH-HHHHHHHHTTTCCEEEEEECTTS
T ss_pred EEEEEEECCCchhH-------------HHHHHHHHHhCCEE-EEEEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEeCCCC
Confidence 46999999997542 23467889999855 45556655444333 45566666668899999999999
Q ss_pred cCc
Q 005171 228 MDR 230 (710)
Q Consensus 228 ~~~ 230 (710)
...
T Consensus 147 ~~~ 149 (528)
T 3tr5_A 147 DTR 149 (528)
T ss_dssp CCS
T ss_pred ccc
Confidence 643
No 156
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.73 E-value=2.7e-08 Score=114.43 Aligned_cols=133 Identities=11% Similarity=0.173 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
.+.|+|+|..++|||||+++|++..- ..++.. . +....|..+.. +
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg------~i~~~~--~------------------~~~~~D~~~~E--------r- 48 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICG------GLSDRE--M------------------EAQVLDSMDLE--------R- 48 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTT------C-----------------------------------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC------Cccccc--c------------------cccccccchhh--------h-
Confidence 56899999999999999999986421 101000 0 00000000000 0
Q ss_pred cCCCCcccccceEEEEecC--CccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 127 AGGNKGVSDKQIRLKIFSP--HVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p--~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
..+..+....+.+.+... ....++||||||..+ +...+..+++.++.+| +|+++......+..
T Consensus 49 -erGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d-------------F~~ev~~~l~~aD~aI-LVVDa~~gv~~qt~ 113 (599)
T 3cb4_D 49 -ERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD-------------FSYEVSRSLAACEGAL-LVVDAGQGVEAQTL 113 (599)
T ss_dssp ---------CEEEEEEECTTSCEEEEEEEECCCCGG-------------GHHHHHHHHHHCSEEE-EEEETTTCCCTHHH
T ss_pred -cccceeeeeEEEEEEecCCCCeEEEEEEECCCchH-------------HHHHHHHHHHHCCEEE-EEEECCCCCCHHHH
Confidence 011222333344444321 125799999999642 3345667888888555 55556554443332
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.........+.++|+|+||+|+.+.
T Consensus 114 -~~~~~~~~~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 114 -ANCYTAMEMDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp -HHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred -HHHHHHHHCCCCEEEeeeccCcccc
Confidence 2222222346899999999999753
No 157
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.72 E-value=2.7e-08 Score=110.65 Aligned_cols=148 Identities=17% Similarity=0.138 Sum_probs=74.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
....|+++|..++|||||+|+|++..-.-......+ +... ....|+...++.-+.+....+
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~-------~~~~---------~~~~g~~~~~~a~~~d~~~~e--- 76 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEK-------YERE---------AKEKNRETWYLSWALDTNQEE--- 76 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHH-------HHHH---------HHhccccchhhhhhhccchhH---
Confidence 456799999999999999999987532100000000 0000 000011101111111111111
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc----
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN---- 201 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~---- 201 (710)
...+++-+.....+..+. ..++||||||.. .+......++..+|+ +|+|++++.....
T Consensus 77 ---r~~GiTid~~~~~~~~~~-~~~~iiDTPGh~-------------~f~~~~~~~~~~aD~-~ilVVDa~~g~~e~~~~ 138 (439)
T 3j2k_7 77 ---RDKGKTVEVGRAYFETEK-KHFTILDAPGHK-------------SFVPNMIGGASQADL-AVLVISARKGEFETGFE 138 (439)
T ss_pred ---hhcCceEEEeEEEEecCC-eEEEEEECCChH-------------HHHHHHHhhHhhCCE-EEEEEECCCCccccccC
Confidence 112333333333333333 479999999942 344555677888985 4455556554320
Q ss_pred --hHHHHHHHhhCCCCCc-EEEeeccccccCc
Q 005171 202 --SDALQIAGIADPDGYR-TIGIITKLDIMDR 230 (710)
Q Consensus 202 --~~~l~la~~~dp~g~r-tI~VlTK~Dl~~~ 230 (710)
......+..+...+.+ +|+|+||+|+.+.
T Consensus 139 ~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 139 KGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 170 (439)
T ss_pred CCchHHHHHHHHHHcCCCeEEEEeecCCCccc
Confidence 1112233333334556 8999999999753
No 158
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.72 E-value=4.4e-08 Score=112.53 Aligned_cols=133 Identities=14% Similarity=0.200 Sum_probs=70.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
.+.|+|+|..++|||||+++|++..- ..++... +....|..+.. +
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg------~i~~~~~--------------------~~~~~D~~~~E--------r- 50 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTG------AISEREK--------------------REQLLDTLDVE--------R- 50 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHT------C-----------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccC------Ccccccc--------------------cccccccchhh--------h-
Confidence 56899999999999999999986320 0010000 00000000000 0
Q ss_pred cCCCCcccccceEEEEecCC--ccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHH
Q 005171 127 AGGNKGVSDKQIRLKIFSPH--VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDA 204 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~--~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~ 204 (710)
..+..+....+.+....++ ...++||||||..+ +...+..+++.++.+|| |+++......+.
T Consensus 51 -erGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d-------------F~~ev~r~l~~aD~aIL-VVDa~~gv~~qt- 114 (600)
T 2ywe_A 51 -ERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD-------------FSYEVSRALAACEGALL-LIDASQGIEAQT- 114 (600)
T ss_dssp ------CCCCSEEEEEECTTSCEEEEEEECCCCSGG-------------GHHHHHHHHHTCSEEEE-EEETTTBCCHHH-
T ss_pred -cccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh-------------HHHHHHHHHHhCCEEEE-EEECCCCccHHH-
Confidence 0112233334444444322 24789999999753 33456677888985555 556655543333
Q ss_pred HHHHHhhCCCCCcEEEeeccccccCc
Q 005171 205 LQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 205 l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
......+...+.++|+|+||+|+.+.
T Consensus 115 ~~~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 115 VANFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp HHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHCCCCEEEEEeccCcccc
Confidence 22222222357889999999999753
No 159
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.72 E-value=2.3e-08 Score=110.03 Aligned_cols=83 Identities=22% Similarity=0.265 Sum_probs=53.1
Q ss_pred cceEEEeCCCCCcCCCCC-Cch----HHHHHHHHHHHHHhc---------C--CCeEEEEEecCCCcccchHHHHHHHhh
Q 005171 148 LDITLVDLPGITKVPVGE-QPA----DIEARIRTMIMSYIK---------Q--PSCLILAVTPANSDLANSDALQIAGIA 211 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~-q~~----di~~~i~~lv~~yi~---------~--~~~iIL~V~~a~~d~~~~~~l~la~~~ 211 (710)
+.++++|+||+....... .-. .+..++...+..|.. . .++++++|++++.++...| +.+++.+
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L 173 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKL 173 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHT
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHH
Confidence 479999999997532110 001 133445555555531 1 1346888999988887777 7888988
Q ss_pred CCCCCcEEEeeccccccCccc
Q 005171 212 DPDGYRTIGIITKLDIMDRGT 232 (710)
Q Consensus 212 dp~g~rtI~VlTK~Dl~~~~~ 232 (710)
. .+.++|+|+||+|.+.+.+
T Consensus 174 ~-~~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 174 D-SKVNIIPIIAKADAISKSE 193 (427)
T ss_dssp C-SCSEEEEEESCGGGSCHHH
T ss_pred h-hCCCEEEEEcchhccchHH
Confidence 7 6899999999999997543
No 160
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.71 E-value=5.6e-08 Score=112.29 Aligned_cols=146 Identities=19% Similarity=0.232 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
...+|++||..++|||||+|+|++.... .+...+ ..+... ....|+...++..+......+..+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~------i~~~~i-~~~~~~---------~~~~g~~~~~~a~~~d~~~~e~~~ 229 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNI------VNQSQL-RKLQRE---------SETMGKSSFKFAWIMDQTNEERER 229 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSC------SCCHHH-HHHHHH---------SSCSSSSCCSSSHHHHHHHHHHHT
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCC------ccHHHH-HHHHhh---------hhhccccccceeeeeccchhhhhC
Confidence 4568999999999999999999987421 000000 000000 000122122223333222222211
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-------
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD------- 198 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d------- 198 (710)
+++-+.....+..+ ...++||||||.. .+......+++.+++ +|+|++++..
T Consensus 230 ------GiTid~~~~~~~~~-~~~~~iiDTPG~e-------------~f~~~~~~~~~~aD~-~llVVDa~~g~~e~~~~ 288 (611)
T 3izq_1 230 ------GVTVSICTSHFSTH-RANFTIVDAPGHR-------------DFVPNAIMGISQADM-AILCVDCSTNAFESGFD 288 (611)
T ss_dssp ------TTCCSCSCCEEECS-SCEEEEEECCSSS-------------CHHHHHTTTSSCCSE-EEEEEECSHHHHHTTCC
T ss_pred ------CeeEeeeeEEEecC-CceEEEEECCCCc-------------ccHHHHHHHHhhcCc-eEEEEECCCCcccccch
Confidence 22222223333333 2479999999964 234555678889985 5555555542
Q ss_pred ccchHHHHHHHhhCCCC-CcEEEeeccccccC
Q 005171 199 LANSDALQIAGIADPDG-YRTIGIITKLDIMD 229 (710)
Q Consensus 199 ~~~~~~l~la~~~dp~g-~rtI~VlTK~Dl~~ 229 (710)
...+. ...+..+...+ .++|+|+||+|+.+
T Consensus 289 ~~~qt-~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 289 LDGQT-KEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp TTSHH-HHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred hhhHH-HHHHHHHHHcCCCeEEEEEecccccc
Confidence 11222 22222222334 45999999999986
No 161
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.71 E-value=2e-09 Score=122.06 Aligned_cols=117 Identities=18% Similarity=0.188 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
..|.|+|+|..++|||||+++|++..+.....+..|... .+..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i------------~~~~------------------------- 45 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI------------GAFL------------------------- 45 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT------------TSCC-------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE------------eEEE-------------------------
Confidence 358899999999999999999998765332222222110 0000
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
+..+....++||||||... +..+...++..++. +++|++++.....+. .
T Consensus 46 ----------------v~~~~g~~i~~iDTPGhe~-------------f~~~~~~~~~~aD~-vILVVDa~dg~~~qt-~ 94 (537)
T 3izy_P 46 ----------------VSLPSGEKITFLDTPGHAA-------------FSAMRARGTQVTDI-VILVVAADDGVMKQT-V 94 (537)
T ss_dssp ----------------BCSSCSSCCBCEECSSSCC-------------TTTSBBSSSBSBSS-CEEECBSSSCCCHHH-H
T ss_pred ----------------EEeCCCCEEEEEECCChHH-------------HHHHHHHHHccCCE-EEEEEECCCCccHHH-H
Confidence 0011123589999999542 22334457788885 455556665443333 4
Q ss_pred HHHHhhCCCCCcEEEeeccccccCc
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
..+..+...+.++|+|+||+|+.+.
T Consensus 95 e~l~~~~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 95 ESIQHAKDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp HHHHHHHTTTCCEEECCBSGGGTTT
T ss_pred HHHHHHHHcCCcEEEEEeccccccc
Confidence 4555555567899999999999753
No 162
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.70 E-value=9.4e-09 Score=112.78 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCC-CccccceE
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRPL 85 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~-g~~Tr~p~ 85 (710)
+|++||.+|+|||||+|+|+|... .++. -.||+.|.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~-~~~~~p~tT~~~~ 38 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEAN 38 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-cccCCCCcccCCc
Confidence 699999999999999999999873 3332 23565553
No 163
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.70 E-value=7.3e-08 Score=94.54 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
..+|+|+|+.|||||||++.|+|..+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 45799999999999999999999875
No 164
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.66 E-value=1.7e-07 Score=103.25 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=42.6
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc---cchHHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---ANSDALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---~~~~~l~la~~~dp~g~rtI~VlTK 224 (710)
..++||||||. +.+......++..+|. +++|++++... .+.+.+.+++.+. ..++|+|+||
T Consensus 83 ~~i~iiDtPGh-------------~~f~~~~~~~~~~~D~-~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK 146 (410)
T 1kk1_A 83 RRVSFIDAPGH-------------EALMTTMLAGASLMDG-AILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNK 146 (410)
T ss_dssp EEEEEEECSSH-------------HHHHHHHHHCGGGCSE-EEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEEC
T ss_pred cEEEEEECCCh-------------HHHHHHHHhhhhhCCE-EEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEEC
Confidence 36899999993 2334445566777784 55555666543 2223344555543 2578999999
Q ss_pred ccccCc
Q 005171 225 LDIMDR 230 (710)
Q Consensus 225 ~Dl~~~ 230 (710)
+|+.+.
T Consensus 147 ~Dl~~~ 152 (410)
T 1kk1_A 147 IELVDK 152 (410)
T ss_dssp GGGSCH
T ss_pred ccCCCH
Confidence 999864
No 165
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.66 E-value=1.9e-08 Score=97.43 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+|+|||+.|+|||||++.|+|.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999995
No 166
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.66 E-value=1.1e-07 Score=104.85 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=42.3
Q ss_pred cceEEEeCCCCCcCCCC-CCchHHHHHHHHHHHHHh-----------cCCC--eEEEEEecCCCcccchHHHHHHHhhCC
Q 005171 148 LDITLVDLPGITKVPVG-EQPADIEARIRTMIMSYI-----------KQPS--CLILAVTPANSDLANSDALQIAGIADP 213 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~-~q~~di~~~i~~lv~~yi-----------~~~~--~iIL~V~~a~~d~~~~~~l~la~~~dp 213 (710)
+.++++||||+...... ..-..+...+......|+ .+++ ++++++.|....+...+ ..+++.+..
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~~lk~L~~ 166 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE 166 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH-HHHHHHHTT
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH-HHHHHHHhc
Confidence 47999999998653211 111223333333444444 3333 23444444334555544 466777765
Q ss_pred CCCcEEEeeccccccCc
Q 005171 214 DGYRTIGIITKLDIMDR 230 (710)
Q Consensus 214 ~g~rtI~VlTK~Dl~~~ 230 (710)
+.++|+|+||+|++.+
T Consensus 167 -~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 167 -KVNIIPLIAKADTLTP 182 (418)
T ss_dssp -TSEEEEEEESTTSSCH
T ss_pred -cCcEEEEEEcccCccH
Confidence 7899999999999864
No 167
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.64 E-value=6.5e-08 Score=95.34 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=43.2
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc---CCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK---QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~---~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~ 225 (710)
.+.++||||+...... ....+.++..+..|++ ..+ .+++|.++.......+ ..+.+.+...+.+.++|.||+
T Consensus 73 ~~~l~Dt~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVP---EEMKRKWQRALGEYLEKRQSLQ-GLVVLMDIRHPLKDLD-QQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEE-EEEEEEETTSCCCHHH-HHHHHHHHHTTCCEEEEEECG
T ss_pred CEEEEECcCCcccccC---HHHHHHHHHHHHHHHHhhhccc-EEEEEEECCCCCchhH-HHHHHHHHHcCCCeEEEEecc
Confidence 5889999998642111 1112345555556663 444 4555566654433222 223333334467899999999
Q ss_pred cccCcc
Q 005171 226 DIMDRG 231 (710)
Q Consensus 226 Dl~~~~ 231 (710)
|+...+
T Consensus 148 D~~s~~ 153 (210)
T 1pui_A 148 DKLASG 153 (210)
T ss_dssp GGSCHH
T ss_pred cCCCch
Confidence 998654
No 168
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.63 E-value=5.8e-08 Score=110.31 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=47.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..++||||||..+- ...+..|+..++++|++ +++......+ ...+.+.+...+.++++|+||+|+
T Consensus 82 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlV-vDa~~g~~~~-t~~~~~~~~~~~ipiivviNK~Dl 146 (529)
T 2h5e_A 82 CLVNLLDTPGHEDF-------------SEDTYRTLTAVDCCLMV-IDAAKGVEDR-TRKLMEVTRLRDTPILTFMNKLDR 146 (529)
T ss_dssp EEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEE-EETTTCSCHH-HHHHHHHHTTTTCCEEEEEECTTS
T ss_pred eEEEEEECCCChhH-------------HHHHHHHHHHCCEEEEE-EeCCccchHH-HHHHHHHHHHcCCCEEEEEcCcCC
Confidence 47999999997532 23456788999855555 5555444332 245666666678899999999999
Q ss_pred cCcc
Q 005171 228 MDRG 231 (710)
Q Consensus 228 ~~~~ 231 (710)
....
T Consensus 147 ~~~~ 150 (529)
T 2h5e_A 147 DIRD 150 (529)
T ss_dssp CCSC
T ss_pred cccc
Confidence 7643
No 169
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.63 E-value=1.6e-07 Score=91.94 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
..+|+|||++|+|||||+|.++|.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999974
No 170
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.62 E-value=1.9e-07 Score=102.75 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=41.6
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc---cchHHHHHHHhhCCCCCcEEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---ANSDALQIAGIADPDGYRTIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---~~~~~l~la~~~dp~g~rtI~VlTK 224 (710)
..++||||||. +.+......++..+|. +++|++++... .+.+.+.+++.+. ..++|+|+||
T Consensus 81 ~~i~iiDtPGh-------------~~f~~~~~~~~~~~D~-~ilVvda~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK 144 (408)
T 1s0u_A 81 RRVSFVDSPGH-------------ETLMATMLSGASLMDG-AILVIAANEPCPQPQTKEHLMALEILG--IDKIIIVQNK 144 (408)
T ss_dssp EEEEEEECSSH-------------HHHHHHHHTTCSCCSE-EEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEEC
T ss_pred cEEEEEECCCH-------------HHHHHHHHHhHhhCCE-EEEEEECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEc
Confidence 36999999993 2333444556667784 55555666543 1223344444432 2479999999
Q ss_pred ccccCc
Q 005171 225 LDIMDR 230 (710)
Q Consensus 225 ~Dl~~~ 230 (710)
+|+.+.
T Consensus 145 ~Dl~~~ 150 (408)
T 1s0u_A 145 IDLVDE 150 (408)
T ss_dssp TTSSCT
T ss_pred cCCCCH
Confidence 999864
No 171
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.61 E-value=7.3e-08 Score=105.92 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=42.2
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCc-EEEeecccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~r-tI~VlTK~D 226 (710)
..++||||||..+ +......++..+|.+||+| ++......+. .+.+..+...+.+ +|+|+||+|
T Consensus 75 ~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVv-da~~g~~~qt-~~~l~~~~~~~ip~iivviNK~D 139 (405)
T 2c78_A 75 RHYSHVDCPGHAD-------------YIKNMITGAAQMDGAILVV-SAADGPMPQT-REHILLARQVGVPYIVVFMNKVD 139 (405)
T ss_dssp CEEEEEECCCSGG-------------GHHHHHHHHTTCSSEEEEE-ETTTCCCHHH-HHHHHHHHHTTCCCEEEEEECGG
T ss_pred eEEEEEECCChHH-------------HHHHHHHHHHHCCEEEEEE-ECCCCCcHHH-HHHHHHHHHcCCCEEEEEEECcc
Confidence 5799999999642 2345567888898655555 5544432222 2222333233566 789999999
Q ss_pred ccC
Q 005171 227 IMD 229 (710)
Q Consensus 227 l~~ 229 (710)
+.+
T Consensus 140 l~~ 142 (405)
T 2c78_A 140 MVD 142 (405)
T ss_dssp GCC
T ss_pred ccC
Confidence 985
No 172
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.59 E-value=2.1e-07 Score=101.17 Aligned_cols=61 Identities=13% Similarity=0.294 Sum_probs=38.4
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHhhCCCCCcE-EEeec-c
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN--SDALQIAGIADPDGYRT-IGIIT-K 224 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~--~~~l~la~~~dp~g~rt-I~VlT-K 224 (710)
.++||||||..+ .+ ..+..+++.++.+||+|. +..... .+.+.+++.+ +.+. |+|+| |
T Consensus 61 ~i~iiDtPGh~~------------f~-~~~~~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~~~---~i~~~ivvvNNK 122 (370)
T 2elf_A 61 NMVFVDAHSYPK------------TL-KSLITALNISDIAVLCIP--PQGLDAHTGECIIALDLL---GFKHGIIALTRS 122 (370)
T ss_dssp EEEEEECTTTTT------------CH-HHHHHHHHTCSEEEEEEC--TTCCCHHHHHHHHHHHHT---TCCEEEEEECCG
T ss_pred EEEEEECCChHH------------HH-HHHHHHHHHCCEEEEEEc--CCCCcHHHHHHHHHHHHc---CCCeEEEEEEec
Confidence 589999999642 22 233456788886666654 444332 2333444443 5566 99999 9
Q ss_pred ccc
Q 005171 225 LDI 227 (710)
Q Consensus 225 ~Dl 227 (710)
+|+
T Consensus 123 ~Dl 125 (370)
T 2elf_A 123 DST 125 (370)
T ss_dssp GGS
T ss_pred cCC
Confidence 999
No 173
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.57 E-value=1.4e-08 Score=110.31 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=31.9
Q ss_pred CCCCcchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 19 VPLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 19 ~~~~~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
+.-+..+-.+.+.+.+... -..|+++|.+|+|||||+|+|+|.
T Consensus 143 A~~g~gi~~L~~~I~~~~~---------~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 143 AAKGIGMAKVMEAINRYRE---------GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTTTBTHHHHHHHHHHHHT---------TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhhcc---------cCcEEEEcCCCCchHHHHHHHHhh
Confidence 3345566666666655421 236999999999999999999987
No 174
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.57 E-value=1.6e-08 Score=116.43 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=42.0
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
.++||||||..+-. .+...+++.++ ++++|++++.....+. ...++.+...+.++|+|+||+|+.
T Consensus 71 ~i~liDTPGhe~F~-------------~~~~r~~~~aD-~aILVvDa~~Gv~~qT-~e~l~~l~~~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 71 GLFFIDTPGHEAFT-------------TLRKRGGALAD-LAILIVDINEGFKPQT-QEALNILRMYRTPFVVAANKIDRI 135 (594)
T ss_dssp EEEEECCCTTSCCT-------------TSBCSSSBSCS-EEEEEEETTTCCCHHH-HHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CEEEEECCCcHHHH-------------HHHHHHHhhCC-EEEEEEECCCCccHhH-HHHHHHHHHcCCeEEEEecccccc
Confidence 59999999975331 22235677787 5555566665443322 333333334568999999999997
Q ss_pred C
Q 005171 229 D 229 (710)
Q Consensus 229 ~ 229 (710)
.
T Consensus 136 ~ 136 (594)
T 1g7s_A 136 H 136 (594)
T ss_dssp T
T ss_pred c
Confidence 5
No 175
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.55 E-value=1.1e-07 Score=105.61 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=42.5
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--HHHHHHHhhCCCCCcEEEeeccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~~l~la~~~dp~g~rtI~VlTK~ 225 (710)
..++||||||.. .+......|+..++. +++|++++.....+ +.+.+++.+. ..++|+|+||+
T Consensus 104 ~~~~iiDtpGh~-------------~f~~~~~~~~~~aD~-~ilVvDa~~g~~~qt~~~l~~~~~~~--~~~iIvviNK~ 167 (434)
T 1zun_B 104 RKFIIADTPGHE-------------QYTRNMATGASTCDL-AIILVDARYGVQTQTRRHSYIASLLG--IKHIVVAINKM 167 (434)
T ss_dssp EEEEEEECCCSG-------------GGHHHHHHHHTTCSE-EEEEEETTTCSCHHHHHHHHHHHHTT--CCEEEEEEECT
T ss_pred ceEEEEECCChH-------------HHHHHHHHHHhhCCE-EEEEEECCCCCcHHHHHHHHHHHHcC--CCeEEEEEEcC
Confidence 469999999953 223344567889985 45555665544322 2234454442 23689999999
Q ss_pred cccCc
Q 005171 226 DIMDR 230 (710)
Q Consensus 226 Dl~~~ 230 (710)
|+.+.
T Consensus 168 Dl~~~ 172 (434)
T 1zun_B 168 DLNGF 172 (434)
T ss_dssp TTTTS
T ss_pred cCCcc
Confidence 99863
No 176
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.55 E-value=4.4e-08 Score=114.91 Aligned_cols=68 Identities=16% Similarity=0.217 Sum_probs=45.4
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..++||||||..+- ...+..+++.++. +|+|+++......+. ..+.+.+...+.++|+|+||+|+
T Consensus 75 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~-~llVvDa~~g~~~~~-~~~~~~~~~~~~p~ilviNK~Dl 139 (693)
T 2xex_A 75 HRVNIIDTPGHVDF-------------TVEVERSLRVLDG-AVTVLDAQSGVEPQT-ETVWRQATTYGVPRIVFVNKMDK 139 (693)
T ss_dssp EEEEEECCCCCSSC-------------CHHHHHHHHHCSE-EEEEEETTTBSCHHH-HHHHHHHHHTTCCEEEEEECTTS
T ss_pred eeEEEEECcCCcch-------------HHHHHHHHHHCCE-EEEEECCCCCCcHHH-HHHHHHHHHcCCCEEEEEECCCc
Confidence 57999999998642 2334567788884 555556655444333 33444444457899999999999
Q ss_pred cCc
Q 005171 228 MDR 230 (710)
Q Consensus 228 ~~~ 230 (710)
...
T Consensus 140 ~~~ 142 (693)
T 2xex_A 140 LGA 142 (693)
T ss_dssp TTC
T ss_pred ccc
Confidence 864
No 177
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.53 E-value=2e-07 Score=102.15 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=42.4
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--HHHHHHHhhCCCCCc-EEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYR-TIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~~l~la~~~dp~g~r-tI~VlTK 224 (710)
..++||||||.. .+......++..+|.+||+ ++++.....+ +.+.+++. .+.+ .|+|+||
T Consensus 66 ~~~~iiDtpG~~-------------~f~~~~~~~~~~aD~~ilV-vda~~g~~~qt~e~l~~~~~---~~vp~iivviNK 128 (397)
T 1d2e_A 66 RHYAHTDCPGHA-------------DYVKNMITGTAPLDGCILV-VAANDGPMPQTREHLLLARQ---IGVEHVVVYVNK 128 (397)
T ss_dssp CEEEEEECSSHH-------------HHHHHHHHTSSCCSEEEEE-EETTTCSCHHHHHHHHHHHH---TTCCCEEEEEEC
T ss_pred eEEEEEECCChH-------------HHHHHHHhhHhhCCEEEEE-EECCCCCCHHHHHHHHHHHH---cCCCeEEEEEEC
Confidence 479999999942 3445566788899855555 5555443322 22334443 3566 6899999
Q ss_pred ccccC
Q 005171 225 LDIMD 229 (710)
Q Consensus 225 ~Dl~~ 229 (710)
+|+.+
T Consensus 129 ~Dl~~ 133 (397)
T 1d2e_A 129 ADAVQ 133 (397)
T ss_dssp GGGCS
T ss_pred cccCC
Confidence 99985
No 178
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.52 E-value=1e-08 Score=115.33 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=41.1
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc--hHHHHHHHhhCCCCCcEEEeecccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLAN--SDALQIAGIADPDGYRTIGIITKLD 226 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~--~~~l~la~~~dp~g~rtI~VlTK~D 226 (710)
.++||||||..+- ..+...++..+|.+||+| +++..... .+.+.+++. .+.++|+|+||+|
T Consensus 52 ~i~~iDTPGhe~f-------------~~~~~~~~~~aD~aILVV-da~~g~~~qT~e~l~~~~~---~~vPiIVviNKiD 114 (501)
T 1zo1_I 52 MITFLDTPGHAAF-------------TSMRARGAQATDIVVLVV-AADDGVMPQTIEAIQHAKA---AQVPVVVAVNKID 114 (501)
T ss_dssp CCCEECCCTTTCC-------------TTSBCSSSBSCSSEEEEE-ETTTBSCTTTHHHHHHHHH---TTCCEEEEEECSS
T ss_pred EEEEEECCCcHHH-------------HHHHHHHHhhCCEEEEEe-ecccCccHHHHHHHHHHHh---cCceEEEEEEecc
Confidence 5899999996432 122235677888666555 55543322 233444443 4678999999999
Q ss_pred ccCc
Q 005171 227 IMDR 230 (710)
Q Consensus 227 l~~~ 230 (710)
+.+.
T Consensus 115 l~~~ 118 (501)
T 1zo1_I 115 KPEA 118 (501)
T ss_dssp SSTT
T ss_pred cccc
Confidence 9753
No 179
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.52 E-value=1.9e-07 Score=97.10 Aligned_cols=83 Identities=23% Similarity=0.348 Sum_probs=50.6
Q ss_pred cceEEEeCCCCCcCCCCCCc-hHHHHHHHHHHHHHhc--------------CCCeEEEEEecCCCcccchHHHHHHHhhC
Q 005171 148 LDITLVDLPGITKVPVGEQP-ADIEARIRTMIMSYIK--------------QPSCLILAVTPANSDLANSDALQIAGIAD 212 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~-~di~~~i~~lv~~yi~--------------~~~~iIL~V~~a~~d~~~~~~l~la~~~d 212 (710)
+.++++|+||+.......+. ..+...+......++. .+.+.++++.+....+...+ ..+++.+.
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~ 138 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS 138 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH
Confidence 47999999999754322221 2233333222222221 23556666666667777666 67777777
Q ss_pred CCCCcEEEeeccccccCccc
Q 005171 213 PDGYRTIGIITKLDIMDRGT 232 (710)
Q Consensus 213 p~g~rtI~VlTK~Dl~~~~~ 232 (710)
.. ..+|.|+||+|.+.+.+
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~e 157 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLEE 157 (270)
T ss_dssp TT-SEEEEEETTGGGSCHHH
T ss_pred hc-CcEEEEEeccccCCHHH
Confidence 66 89999999999997643
No 180
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.52 E-value=6.3e-07 Score=96.73 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
..+.|+|+|.+|+|||||+++|++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999743
No 181
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.52 E-value=2e-07 Score=104.13 Aligned_cols=143 Identities=20% Similarity=0.317 Sum_probs=73.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCC-CCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRD-FLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTD 124 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~-~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~ 124 (710)
....|+++|..++|||||+|+|++.. .++... + .. +... ..+ .|+...++.-+.+....+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~-~-~~------~~~~--~~~-------~g~~~~~~a~~~d~~~~e-- 66 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRT-I-EK------FEKE--AAE-------LGKGSFKYAWVLDKLKAE-- 66 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHH-H-HH------HHHH--GGG-------GSSSCCCHHHHHHHHHHH--
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHH-H-HH------hhhh--HHh-------cCCcchhhhhhhccchhH--
Confidence 34679999999999999999999741 110000 0 00 0000 000 011111222222222221
Q ss_pred hhcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc-----
Q 005171 125 KEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL----- 199 (710)
Q Consensus 125 ~~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~----- 199 (710)
+..| ++-+.....+..+. ..++||||||.. .+......++..+|.+| +|+++....
T Consensus 67 r~~G----iTi~~~~~~~~~~~-~~~~iiDtPGh~-------------~f~~~~~~~~~~aD~~i-lVvda~~g~~~~sf 127 (458)
T 1f60_A 67 RERG----ITIDIALWKFETPK-YQVTVIDAPGHR-------------DFIKNMITGTSQADCAI-LIIAGGVGEFEAGI 127 (458)
T ss_dssp HHTT----CCCSCSCEEEECSS-EEEEEEECCCCT-------------THHHHHHHSSSCCSEEE-EEEECSHHHHHHHT
T ss_pred HhcC----cEEEEEEEEEecCC-ceEEEEECCCcH-------------HHHHHHHhhhhhCCEEE-EEEeCCcCcccccc
Confidence 1112 22222222333333 469999999943 23445567889998555 555665432
Q ss_pred ----cchHHHHHHHhhCCCCC-cEEEeeccccccC
Q 005171 200 ----ANSDALQIAGIADPDGY-RTIGIITKLDIMD 229 (710)
Q Consensus 200 ----~~~~~l~la~~~dp~g~-rtI~VlTK~Dl~~ 229 (710)
.+.+.+.+++.. +. ++|+|+||+|+.+
T Consensus 128 ~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 128 SKDGQTREHALLAFTL---GVRQLIVAVNKMDSVK 159 (458)
T ss_dssp CTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGT
T ss_pred CcchhHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence 122223344433 44 4899999999984
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.52 E-value=3.7e-07 Score=107.23 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=45.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..++||||||..+ +...+..+++.+|.+|++ +++......+. ..+.+.+...+.+.++|+||+|+
T Consensus 82 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD~aIlV-vDa~~gv~~qt-~~~~~~~~~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 82 HRINIIDTPGHVD-------------FTIEVERSMRVLDGAVMV-YCAVGGVQPQS-ETVWRQANKYKVPRIAFVNKMDR 146 (704)
T ss_pred eeEEEEeCCCccc-------------hHHHHHHHHHHCCEEEEE-EeCCCCCcHHH-HHHHHHHHHcCCCEEEEEeCCCc
Confidence 5799999999642 345566788888855554 55554433222 34444455557899999999999
Q ss_pred cCc
Q 005171 228 MDR 230 (710)
Q Consensus 228 ~~~ 230 (710)
...
T Consensus 147 ~~~ 149 (704)
T 2rdo_7 147 MGA 149 (704)
T ss_pred ccc
Confidence 754
No 183
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.47 E-value=5.7e-07 Score=96.91 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.6
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
-..+.|+++|.+|||||||+|+|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999974
No 184
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.46 E-value=7.2e-07 Score=94.11 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=41.6
Q ss_pred cceEEEeCCCCCcCCCC-CCchHHHHHHHHHHHHHhcCC-------------CeEEEEEecCCCcccchHHHHHHHhhCC
Q 005171 148 LDITLVDLPGITKVPVG-EQPADIEARIRTMIMSYIKQP-------------SCLILAVTPANSDLANSDALQIAGIADP 213 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~-~q~~di~~~i~~lv~~yi~~~-------------~~iIL~V~~a~~d~~~~~~l~la~~~dp 213 (710)
..++++||||+...... +.-..+...+.+....|+... .++++++.|....+...+ ..+++.+..
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~-~~~l~~l~~ 154 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-VAFMKAIHN 154 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH-HHHHHHHTT
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH-HHHHHHHHh
Confidence 47999999998432110 111122222333333555432 224444444333354444 466777754
Q ss_pred CCCcEEEeeccccccCc
Q 005171 214 DGYRTIGIITKLDIMDR 230 (710)
Q Consensus 214 ~g~rtI~VlTK~Dl~~~ 230 (710)
..++++|+||.|+..+
T Consensus 155 -~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 155 -KVNIVPVIAKADTLTL 170 (301)
T ss_dssp -TSCEEEEECCGGGSCH
T ss_pred -cCCEEEEEEeCCCCCH
Confidence 4689999999999864
No 185
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.44 E-value=1.8e-07 Score=109.62 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=45.4
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..++||||||..+ +...+..+++.+|.+|+ |+++......+. ..+.+.+...+.+.++|+||+|+
T Consensus 77 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~il-VvDa~~g~~~~t-~~~~~~~~~~~~p~ivviNKiD~ 141 (691)
T 1dar_A 77 HRINIIDTPGHVD-------------FTIEVERSMRVLDGAIV-VFDSSQGVEPQS-ETVWRQAEKYKVPRIAFANKMDK 141 (691)
T ss_dssp EEEEEECCCSSTT-------------CHHHHHHHHHHCSEEEE-EEETTTCSCHHH-HHHHHHHHHTTCCEEEEEECTTS
T ss_pred eEEEEEECcCccc-------------hHHHHHHHHHHCCEEEE-EEECCCCcchhh-HHHHHHHHHcCCCEEEEEECCCc
Confidence 5799999999753 33456678888885554 555554433332 23333343457899999999999
Q ss_pred cCcc
Q 005171 228 MDRG 231 (710)
Q Consensus 228 ~~~~ 231 (710)
....
T Consensus 142 ~~~~ 145 (691)
T 1dar_A 142 TGAD 145 (691)
T ss_dssp TTCC
T ss_pred ccCC
Confidence 8543
No 186
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.44 E-value=7.2e-08 Score=104.72 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=32.3
Q ss_pred CCCCcchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 19 VPLGGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 19 ~~~~~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
+.-+..+-.+.+.|.+... -.+|+++|.+|+|||||+|+|+|..
T Consensus 141 A~~g~gi~~L~~~l~~~~~---------~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 141 AAKGQGIAELADAIEYYRG---------GKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTTCTTHHHHHHHHHHHHT---------TSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHhhhhhhcc---------cceEEEecCCCCChhHHHHHHHhhh
Confidence 3345566666666655321 1369999999999999999999874
No 187
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.42 E-value=2.9e-07 Score=89.84 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
..+|+|||+.|||||||++.|+|..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999875
No 188
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.41 E-value=3.7e-07 Score=101.34 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=42.0
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-------ccchH--HHHHHHhhCCCCCcE
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD-------LANSD--ALQIAGIADPDGYRT 218 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d-------~~~~~--~l~la~~~dp~g~rt 218 (710)
..++||||||..+ +......|+..++++||+| ++... +..+. .+.+++.+. ..++
T Consensus 84 ~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVv-Da~~gsfe~~~~~~~qt~~~~~~~~~~~--~~~i 147 (435)
T 1jny_A 84 YFFTIIDAPGHRD-------------FVKNMITGASQADAAILVV-SAKKGEYEAGMSVEGQTREHIILAKTMG--LDQL 147 (435)
T ss_dssp CEEEECCCSSSTT-------------HHHHHHHTSSCCSEEEEEE-ECSTTHHHHHHSTTCHHHHHHHHHHHTT--CTTC
T ss_pred eEEEEEECCCcHH-------------HHHHHHhhhhhcCEEEEEE-ECCCCccccccccchHHHHHHHHHHHcC--CCeE
Confidence 4699999999542 3345667889998555554 55544 22222 223333332 1468
Q ss_pred EEeeccccccCc
Q 005171 219 IGIITKLDIMDR 230 (710)
Q Consensus 219 I~VlTK~Dl~~~ 230 (710)
|+|+||+|+.+.
T Consensus 148 ivviNK~Dl~~~ 159 (435)
T 1jny_A 148 IVAVNKMDLTEP 159 (435)
T ss_dssp EEEEECGGGSSS
T ss_pred EEEEEcccCCCc
Confidence 999999999874
No 189
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.39 E-value=2.4e-07 Score=110.96 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=44.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
..+.||||||..+- ...+..|++.++++|+ |+++......+. ..+.+.+...+.+.|+|+||+|+
T Consensus 98 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~ail-VvDa~~g~~~qt-~~~~~~~~~~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDF-------------SSEVTAALRVTDGALV-VVDTIEGVCVQT-ETVLRQALGERIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSS-------------CHHHHHHHHTCSEEEE-EEETTTBSCHHH-HHHHHHHHHTTCEEEEEEECHHH
T ss_pred ceEEEEECcCchhh-------------HHHHHHHHHhCCEEEE-EEeCCCCCCHHH-HHHHHHHHHcCCCeEEEEECCCc
Confidence 46899999997642 2346678899985555 455555444333 33344444457899999999999
Q ss_pred c
Q 005171 228 M 228 (710)
Q Consensus 228 ~ 228 (710)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 7
No 190
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.31 E-value=1.6e-06 Score=95.55 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.+.|++||.+||||||||++|+|..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Confidence 3569999999999999999999974
No 191
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.31 E-value=1.2e-06 Score=105.95 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=43.0
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch--HHHHHHHhhCCCCCc-EEEeecc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS--DALQIAGIADPDGYR-TIGIITK 224 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~--~~l~la~~~dp~g~r-tI~VlTK 224 (710)
..++||||||.. .+......++..+|.+||+ ++++.....+ +.+.+++.. +.+ +|+|+||
T Consensus 359 ~kI~IIDTPGHe-------------dF~~~mi~gas~AD~aILV-VDAtdGv~~QTrEhL~ll~~l---gIP~IIVVINK 421 (1289)
T 3avx_A 359 RHYAHVDCPGHA-------------DYVKNMITGAAQMDGAILV-VAATDGPMPQTREHILLGRQV---GVPYIIVFLNK 421 (1289)
T ss_dssp CEEEEEECCCHH-------------HHHHHHHHTSCCCSEEEEE-EETTTCSCTTHHHHHHHHHHH---TCSCEEEEEEC
T ss_pred EEEEEEECCChH-------------HHHHHHHHHHhhCCEEEEE-EcCCccCcHHHHHHHHHHHHc---CCCeEEEEEee
Confidence 579999999932 3455666788999855554 5555443322 234444443 566 7899999
Q ss_pred ccccC
Q 005171 225 LDIMD 229 (710)
Q Consensus 225 ~Dl~~ 229 (710)
+|+.+
T Consensus 422 iDLv~ 426 (1289)
T 3avx_A 422 CDMVD 426 (1289)
T ss_dssp CTTCC
T ss_pred ccccc
Confidence 99985
No 192
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.29 E-value=3.2e-07 Score=94.23 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCCEEEEEcCC---------CCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQ---------SSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~q---------ssGKSSLLnaL~G~ 70 (710)
...+|+|||.. |+|||||+|+|++.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 44589999999 99999999999994
No 193
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.28 E-value=2e-06 Score=100.35 Aligned_cols=132 Identities=20% Similarity=0.224 Sum_probs=75.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~ 125 (710)
....|+|+|..++|||||+++|++........|.. ..|....|+......
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-----------------------~~g~~~~d~~~~e~~------- 57 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-----------------------EEGTTTTDYTPEAKL------- 57 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-----------------------GGTCCSSCCSHHHHH-------
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-----------------------cCCcccccCCHHHHh-------
Confidence 34679999999999999999999754311111100 011122222211100
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
.+.++... ...+... ...+.||||||..+ +...+..|++.++.+|+++. +......+. .
T Consensus 58 ---~giti~~~--~~~~~~~-~~~~nliDTpG~~~-------------f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt-~ 116 (665)
T 2dy1_A 58 ---HRTTVRTG--VAPLLFR-GHRVFLLDAPGYGD-------------FVGEIRGALEAADAALVAVS-AEAGVQVGT-E 116 (665)
T ss_dssp ---TTSCCSCE--EEEEEET-TEEEEEEECCCSGG-------------GHHHHHHHHHHCSEEEEEEE-TTTCSCHHH-H
T ss_pred ---cCCeEEec--ceEEeeC-CEEEEEEeCCCccc-------------hHHHHHHHHhhcCcEEEEEc-CCcccchhH-H
Confidence 01122222 2233322 34689999999642 33556778888886555554 554443322 3
Q ss_pred HHHHhhCCCCCcEEEeecccccc
Q 005171 206 QIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
.+.+.+...+.++|+|+||+|+.
T Consensus 117 ~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 117 RAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHccCCEEEEecCCchh
Confidence 44444444578999999999997
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.27 E-value=6.4e-07 Score=96.73 Aligned_cols=37 Identities=27% Similarity=0.440 Sum_probs=25.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccce
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p 84 (710)
.+|++||.+|+|||||+|+|+|..+.....-.||..|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p 39 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP 39 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc
Confidence 4699999999999999999999873222222345544
No 195
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.26 E-value=8.6e-07 Score=99.27 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=35.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc---------cchHHHHHHHhhCCCCCc-
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---------ANSDALQIAGIADPDGYR- 217 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---------~~~~~l~la~~~dp~g~r- 217 (710)
..++||||||.. .+......++..++.+||+ ++++... .+.+.+.+++. .+.+
T Consensus 121 ~~~~iiDtPGh~-------------~f~~~~~~~~~~aD~~ilV-vDa~~g~~e~sf~~~~qt~e~l~~~~~---~~vp~ 183 (467)
T 1r5b_A 121 RRFSLLDAPGHK-------------GYVTNMINGASQADIGVLV-ISARRGEFEAGFERGGQTREHAVLART---QGINH 183 (467)
T ss_dssp EEEEECCCCC------------------------TTSCSEEEEE-EECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSS
T ss_pred eEEEEEECCCcH-------------HHHHHHHhhcccCCEEEEE-EeCCcCccccccCCCCcHHHHHHHHHH---cCCCE
Confidence 469999999953 2334455678889855555 4555442 22222334433 3555
Q ss_pred EEEeeccccccC
Q 005171 218 TIGIITKLDIMD 229 (710)
Q Consensus 218 tI~VlTK~Dl~~ 229 (710)
+|+|+||+|+.+
T Consensus 184 iivviNK~Dl~~ 195 (467)
T 1r5b_A 184 LVVVINKMDEPS 195 (467)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEECccCCC
Confidence 899999999965
No 196
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.25 E-value=2.9e-08 Score=114.29 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
...|+|||..++|||||+|+|++.
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999999864
No 197
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.20 E-value=1.4e-05 Score=81.53 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=24.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHh-----CCCCC
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALV-----GRDFL 73 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~-----G~~~l 73 (710)
...+.++++|..|+||||++++|. |.+++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~ 45 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVA 45 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 345678999999999999999998 66543
No 198
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.18 E-value=2.6e-06 Score=97.21 Aligned_cols=134 Identities=13% Similarity=0.191 Sum_probs=73.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecC--CCccccChhHHHHHHHHhhhh
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHL--PGKRFYDFSEIRREIQAQTDK 125 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~--~g~~~~d~~~i~~~i~~~t~~ 125 (710)
..|+|||...+|||||.++|+-.. |...+ . +..... .+....|+.++.++
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~t------G~i~~-~--------------G~V~~~~~~~~~~~D~~~~Ere------- 83 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFG------GAIQM-A--------------GSVKARKAARHATSDWMAMERE------- 83 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHT------TCHHH-H--------------HHHHHC-----------------------
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhc------Ccccc-c--------------ceeecCccccccccCChHHHHH-------
Confidence 459999999999999999997331 10000 0 000000 00112233322211
Q ss_pred hcCCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHH
Q 005171 126 EAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDAL 205 (710)
Q Consensus 126 ~~g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l 205 (710)
.+..+....+.+...+ ..++||||||..+- ..-+.+.++-.|+.||+|. |......+. .
T Consensus 84 ---RGITI~s~~~~~~~~~---~~iNlIDTPGHvDF-------------~~Ev~raL~~~DgAvlVvd-a~~GV~~qT-~ 142 (548)
T 3vqt_A 84 ---RGISVTTSVMQFPYRD---RVVNLLDTPGHQDF-------------SEDTYRVLTAVDSALVVID-AAKGVEAQT-R 142 (548)
T ss_dssp -------CTTTEEEEEETT---EEEEEECCCCGGGC-------------SHHHHHHHHSCSEEEEEEE-TTTBSCHHH-H
T ss_pred ---CCCcEeeceEEEEECC---EEEEEEeCCCcHHH-------------HHHHHHHHHhcCceEEEee-cCCCccccc-H
Confidence 2234455555555432 46999999997643 2234456777886666654 544444333 4
Q ss_pred HHHHhhCCCCCcEEEeeccccccCc
Q 005171 206 QIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 206 ~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.+.+.+...+.++|+++||+|....
T Consensus 143 ~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 143 KLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp HHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred HHHHHHHHhCCceEEEEecccchhc
Confidence 5556666678999999999998644
No 199
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.17 E-value=2.8e-06 Score=90.26 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=42.0
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch-HHH-HHH---HhhCCCCCcEEEee
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS-DAL-QIA---GIADPDGYRTIGII 222 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~-~~l-~la---~~~dp~g~rtI~Vl 222 (710)
..|.||||||-.+-.. + .+ +...|.++++++|+++ +....+... +.+ .+. +...| +.++++|.
T Consensus 46 v~LqIWDTAGQErf~~---~-----~l--~~~~yyr~a~~~IlV~-Ditd~~~~~~~~l~~~l~~~~~~~~-~ipillvg 113 (331)
T 3r7w_B 46 IDLAVMELPGQLNYFE---P-----SY--DSERLFKSVGALVYVI-DSQDEYINAITNLAMIIEYAYKVNP-SINIEVLI 113 (331)
T ss_dssp SCEEEEECCSCSSSCC---C-----SH--HHHHHHTTCSEEEEEC-CCSSCTTHHHHHHHHHHHHHHHHCT-TCEEEEEC
T ss_pred EEEEEEECCCchhccc---h-----hh--hhhhhccCCCEEEEEE-ECCchHHHHHHHHHHHHHHHhhcCC-CCcEEEEE
Confidence 5799999999543210 0 01 3467899998655554 444332211 111 122 23344 58899999
Q ss_pred ccccccCc
Q 005171 223 TKLDIMDR 230 (710)
Q Consensus 223 TK~Dl~~~ 230 (710)
||+|+.++
T Consensus 114 NK~DL~~~ 121 (331)
T 3r7w_B 114 HKVDGLSE 121 (331)
T ss_dssp CCCCSSCS
T ss_pred ECcccCch
Confidence 99999864
No 200
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.14 E-value=1.8e-06 Score=94.10 Aligned_cols=37 Identities=27% Similarity=0.477 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCC-Cccccce
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRP 84 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~-g~~Tr~p 84 (710)
-.+|++||.+|+|||||+|+|+|..+ ..+. -.||..|
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p 59 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDP 59 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC--------------CC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCc
Confidence 35799999999999999999999875 3322 2355444
No 201
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.14 E-value=4.1e-05 Score=84.56 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=52.0
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.++.||||||..... ..+...++.+ ... ..++ .+++|++|.. .+++...++.+.+....+.+|+||+|.
T Consensus 183 ~DvVIIDTaGrl~~d-----~~lm~el~~i-~~~-~~pd-~vlLVvDA~~---gq~a~~~a~~f~~~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHKED-----KALIEEMKQI-SNV-IHPH-EVILVIDGTI---GQQAYNQALAFKEATPIGSIIVTKLDG 251 (443)
T ss_dssp CSEEEEECCCCSSCC-----HHHHHHHHHH-HHH-HCCS-EEEEEEEGGG---GGGHHHHHHHHHHSCTTEEEEEECCSS
T ss_pred CCEEEEECCCcccch-----HHHHHHHHHH-HHh-hcCc-eEEEEEeCCC---chhHHHHHHHHHhhCCCeEEEEECCCC
Confidence 479999999976431 2333334333 222 3466 5666676664 345566777777666778899999999
Q ss_pred cCccccHHHHHh
Q 005171 228 MDRGTDARNLLL 239 (710)
Q Consensus 228 ~~~~~~~~~~l~ 239 (710)
...+..+..+..
T Consensus 252 ~~~gG~~ls~~~ 263 (443)
T 3dm5_A 252 SAKGGGALSAVA 263 (443)
T ss_dssp CSSHHHHHHHHH
T ss_pred cccccHHHHHHH
Confidence 877665555543
No 202
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.13 E-value=1.3e-05 Score=90.08 Aligned_cols=77 Identities=25% Similarity=0.230 Sum_probs=45.1
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCc-EEEeecccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYR-TIGIITKLD 226 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~r-tI~VlTK~D 226 (710)
.+++||||||..... ..+...+..+. .++ .++ .+++|+++.... +++..++.+... .+ +++|+||+|
T Consensus 184 ~DvvIIDTpG~~~~~-----~~l~~el~~~~-~~i-~pd-~vllVvDa~~g~---~~~~~a~~~~~~-~~i~gvVlNK~D 251 (504)
T 2j37_W 184 FEIIIVDTSGRHKQE-----DSLFEEMLQVA-NAI-QPD-NIVYVMDASIGQ---ACEAQAKAFKDK-VDVASVIVTKLD 251 (504)
T ss_dssp CCEEEEEECCCCTTC-----HHHHHHHHHHH-HHH-CCS-EEEEEEETTCCT---THHHHHHHHHHH-HCCCCEEEECTT
T ss_pred CcEEEEeCCCCcccc-----hhHHHHHHHHH-hhh-cCc-eEEEEEeccccc---cHHHHHHHHHhh-cCceEEEEeCCc
Confidence 479999999987531 22322333332 233 666 556667776543 234555555432 34 589999999
Q ss_pred ccCccccHHH
Q 005171 227 IMDRGTDARN 236 (710)
Q Consensus 227 l~~~~~~~~~ 236 (710)
....+..+.+
T Consensus 252 ~~~~~g~~l~ 261 (504)
T 2j37_W 252 GHAKGGGALS 261 (504)
T ss_dssp SCCCCTHHHH
T ss_pred cccchHHHHH
Confidence 9865543333
No 203
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.12 E-value=6.2e-06 Score=86.13 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN 77 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~ 77 (710)
-.+|+|||.+|+|||||+|+|+|.....++.
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~ 150 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGD 150 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC----
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCC
Confidence 4579999999999999999999987544443
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.08 E-value=4.5e-06 Score=89.54 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
..+.|+++|.+|+|||||+|+|++.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999854
No 205
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.06 E-value=0.00012 Score=78.30 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-..|+++|.+|||||||+|+|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999975
No 206
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.03 E-value=1.2e-05 Score=88.27 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=41.7
Q ss_pred ccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccc
Q 005171 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLD 226 (710)
Q Consensus 147 ~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~D 226 (710)
.++++++|+||+.... ..+.+.+..+ -+...+ .++. .+... .. ...+.+++.+...+.++++|+||+|
T Consensus 119 ~~~ltv~D~~g~~~~~-----~~~~~~L~~~---~L~~~~-~~~~-lS~G~-~~-kqrv~la~aL~~~~~p~~lV~tkpd 186 (413)
T 1tq4_A 119 IPNVVFWDLPGIGSTN-----FPPDTYLEKM---KFYEYD-FFII-ISATR-FK-KNDIDIAKAISMMKKEFYFVRTKVD 186 (413)
T ss_dssp CTTEEEEECCCGGGSS-----CCHHHHHHHT---TGGGCS-EEEE-EESSC-CC-HHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred cCCeeehHhhcccchH-----HHHHHHHHHc---CCCccC-CeEE-eCCCC-cc-HHHHHHHHHHHhcCCCeEEEEecCc
Confidence 3579999999986421 1122222222 123333 3333 44332 22 3336778887777899999999999
Q ss_pred cc
Q 005171 227 IM 228 (710)
Q Consensus 227 l~ 228 (710)
++
T Consensus 187 ll 188 (413)
T 1tq4_A 187 SD 188 (413)
T ss_dssp HH
T ss_pred cc
Confidence 85
No 207
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.02 E-value=4.9e-06 Score=90.17 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=26.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccce
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p 84 (710)
.+|++||.+|+|||||+|+|++..........||..|
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~p 38 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDK 38 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGST
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecc
Confidence 4699999999999999999998752112223455555
No 208
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.00 E-value=2.4e-06 Score=99.20 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=76.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhhc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEA 127 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~~ 127 (710)
.-|+|+|...+|||||.++|+-.. |...+. +.. ..|....|+.++.++
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~------G~i~~~---------------g~v--~~g~~~~D~~~~Ere--------- 50 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNS------GAITEL---------------GSV--DKGTTRTDNTLLERQ--------- 50 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHH------TCCSSC---------------SSC--CCSCCSTTCSTTHHH---------
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc------CCCccc---------------ccc--ccCCcccCCcHHHHh---------
Confidence 348999999999999999997321 000000 000 012233344332221
Q ss_pred CCCCcccccceEEEEecCCccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHH
Q 005171 128 GGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQI 207 (710)
Q Consensus 128 g~~~~~s~~~i~l~i~~p~~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~l 207 (710)
.+..+....+.+...+ ..++||||||..+- ..-+.+.++-.|+.||+| +|......+. ..+
T Consensus 51 -RGITI~s~~~~~~~~~---~~iNlIDTPGH~DF-------------~~Ev~raL~~~DgavlVV-Da~~GV~~qT-~~v 111 (638)
T 3j25_A 51 -RGITIQTGITSFQWEN---TKVNIIDTPGHMDF-------------LAEVYRSLSVLDGAILLI-SAKDGVQAQT-RIL 111 (638)
T ss_dssp -HSSCSSCCCCCCBCSS---CBCCCEECCCSSST-------------HHHHHHHHTTCSEEECCE-ESSCTTCSHH-HHH
T ss_pred -CCCcEEeeeEEEEECC---EEEEEEECCCcHHH-------------HHHHHHHHHHhCEEEEEE-eCCCCCcHHH-HHH
Confidence 1223333344443322 46899999997632 233456678888666555 5555554443 345
Q ss_pred HHhhCCCCCcEEEeeccccccCcc
Q 005171 208 AGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 208 a~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
.+.+...+.+.|+++||+|.....
T Consensus 112 ~~~a~~~~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 112 FHALRKMGIPTIFFINKIDQNGID 135 (638)
T ss_dssp HHHHHHHTCSCEECCEECCSSSCC
T ss_pred HHHHHHcCCCeEEEEeccccccCC
Confidence 555555578999999999986543
No 209
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.96 E-value=1.3e-05 Score=79.50 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
..|.|+|+|..|+|||||+++|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999999999999975
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.96 E-value=5.2e-06 Score=97.65 Aligned_cols=136 Identities=13% Similarity=0.173 Sum_probs=74.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCCCccccceEEEEecccCCCccceeeecCCCccccChhHHHHHHHHhhhhh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKE 126 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~Tr~p~~~~l~~~~~~~~~~~~~~~~g~~~~d~~~i~~~i~~~t~~~ 126 (710)
+..|+|||...+|||||.++|+-.. |. ++.. +.. ..|.++.|+.+..++
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~------g~-i~~~--------------g~v--~~~~~~~D~~~~E~e-------- 61 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYT------GV-NHKL--------------GEV--HDGAATTDWMVQEQE-------- 61 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHH------HH-HHHC------------------------------------------
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhc------CC-CCcC--------------cee--cCCCccCCChHHHHH--------
Confidence 4569999999999999999997321 10 0000 000 002223333322111
Q ss_pred cCCCCcccccceEEEEecCC----ccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccch
Q 005171 127 AGGNKGVSDKQIRLKIFSPH----VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANS 202 (710)
Q Consensus 127 ~g~~~~~s~~~i~l~i~~p~----~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~ 202 (710)
.+..+....+.+...+.. ...++||||||..+- ..-+.+.++-.|..||+| +|......+
T Consensus 62 --RGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF-------------~~Ev~~aLr~~DgavlvV-DaveGV~~q 125 (709)
T 4fn5_A 62 --RGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF-------------TIEVERSLRVLDGAVVVF-CGTSGVEPQ 125 (709)
T ss_dssp --------CCEEEEEECCTTSCSCCEEEEEECCCSCTTC-------------HHHHHHHHHHCSEEEEEE-ETTTCSCHH
T ss_pred --cCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCccc-------------HHHHHHHHHHhCeEEEEE-ECCCCCchh
Confidence 233445566666665433 246999999997632 233445567677666555 555454443
Q ss_pred HHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 203 DALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 203 ~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
. ..+.+.+...+.+.|+|+||+|+...
T Consensus 126 T-~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 126 S-ETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp H-HHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred H-HHHHHHHHHcCCCeEEEEccccccCc
Confidence 3 45666666668999999999999643
No 211
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.92 E-value=1.3e-05 Score=91.70 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 45 IELPQVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 45 ~~lPqIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
-..+.|+|||.+|+|||||||+|+|...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 3567899999999999999999999863
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.83 E-value=1.8e-05 Score=86.39 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=29.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCCCCccCC-Cccccce
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGN-DICTRRP 84 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~~lP~~~-g~~Tr~p 84 (710)
-..|++||.+|||||||+|+|+|..+.+++. -.||..|
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p 58 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP 58 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecc
Confidence 3579999999999999999999987533333 3356555
No 213
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.76 E-value=1.2e-05 Score=82.92 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=23.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCCCCc
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~~lP 74 (710)
.+|++||.+|+|||||+|+|+|.....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~ 126 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS 126 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC--
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc
Confidence 689999999999999999999987533
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.71 E-value=3.4e-05 Score=85.34 Aligned_cols=78 Identities=23% Similarity=0.176 Sum_probs=45.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHH-HHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCC-CcEEEeeccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMI-MSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDG-YRTIGIITKL 225 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv-~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g-~rtI~VlTK~ 225 (710)
.++.||||||..... . ..+..+. ...+..++ .+++|+++... .++...++.+.+.. ..+.+|+||+
T Consensus 181 ~D~vIIDT~G~~~~~-----~---~l~~~l~~i~~~~~~d-~vllVvda~~g---~~~~~~~~~~~~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEE-----K---GLLEEMKQIKEITNPD-EIILVIDGTIG---QQAGIQAKAFKEAVGEIGSIIVTKL 248 (432)
T ss_dssp CSEEEEECCCSCSSH-----H---HHHHHHHHTTSSSCCS-EEEEEEEGGGG---GGHHHHHHHHHTTSCSCEEEEEECS
T ss_pred CCEEEEcCCCCcccc-----H---HHHHHHHHHHHHhcCc-ceeEEeecccc---HHHHHHHHHHhhcccCCeEEEEeCC
Confidence 579999999986421 1 1222221 11222566 56666666543 24566666665543 3388999999
Q ss_pred cccCccccHHHH
Q 005171 226 DIMDRGTDARNL 237 (710)
Q Consensus 226 Dl~~~~~~~~~~ 237 (710)
|....+..+..+
T Consensus 249 D~~~~~g~~l~~ 260 (432)
T 2v3c_C 249 DGSAKGGGALSA 260 (432)
T ss_dssp SSCSTTHHHHHH
T ss_pred CCccchHHHHHH
Confidence 997655444343
No 215
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.64 E-value=0.00011 Score=81.16 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=47.4
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.++.||||||....+. .......+..+. ..+ .++ .+++|+++... +++...++.+......+.+|+||+|.
T Consensus 180 ~DvvIIDTaGr~~~~~---d~~lm~el~~i~-~~~-~pd-~vlLVlDa~~g---q~a~~~a~~f~~~~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGE---ETKLLEEMKEMY-DVL-KPD-DVILVIDASIG---QKAYDLASRFHQASPIGSVIITKMDG 250 (433)
T ss_dssp CSEEEEEECCCSSSCC---TTHHHHHHHHHH-HHH-CCS-EEEEEEEGGGG---GGGHHHHHHHHHHCSSEEEEEECGGG
T ss_pred CCEEEEECCCCccccC---CHHHHHHHHHHH-Hhh-CCc-ceEEEEeCccc---hHHHHHHHHHhcccCCcEEEEecccc
Confidence 5799999999754101 122223333332 233 455 45555565542 34455666665444568899999999
Q ss_pred cCccccHHHHH
Q 005171 228 MDRGTDARNLL 238 (710)
Q Consensus 228 ~~~~~~~~~~l 238 (710)
...+..+..+.
T Consensus 251 ~a~~G~als~~ 261 (433)
T 3kl4_A 251 TAKGGGALSAV 261 (433)
T ss_dssp CSCHHHHHHHH
T ss_pred cccchHHHHHH
Confidence 87665544443
No 216
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.63 E-value=0.00015 Score=71.87 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
..+.|+|+|..|+|||||++.|++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999999764
No 217
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.59 E-value=0.00012 Score=81.76 Aligned_cols=95 Identities=17% Similarity=0.182 Sum_probs=51.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHH---HHHHhc-CCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTM---IMSYIK-QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~l---v~~yi~-~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlT 223 (710)
.++.||||+|..... ..+...+.++ +..... .++.+ |+|.++.. .++++..++.+...-.-+.+|+|
T Consensus 376 ~DvVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~ev-LLvLDatt---Gq~al~~ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 376 IDVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEV-MLTIDAST---GQNAVSQAKLFHEAVGLTGITLT 446 (503)
T ss_dssp CSEEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEE-EEEEEGGG---THHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCee-EEEecCcc---cHHHHHHHHHHHhhcCCCEEEEE
Confidence 368999999975331 2222233322 222222 35444 44555443 24556666666544456789999
Q ss_pred cccccCccccHHHHHhCCccccccceEEEE
Q 005171 224 KLDIMDRGTDARNLLLGKVIPLRLGYVGVV 253 (710)
Q Consensus 224 K~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~ 253 (710)
|+|....+..+..++... .+.+-|+|+-
T Consensus 447 KLD~takgG~~lsi~~~~--~~PI~fig~G 474 (503)
T 2yhs_A 447 KLDGTAKGGVIFSVADQF--GIPIRYIGVG 474 (503)
T ss_dssp CGGGCSCCTHHHHHHHHH--CCCEEEEECS
T ss_pred cCCCcccccHHHHHHHHH--CCCEEEEecC
Confidence 999876666666555321 2333455543
No 218
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.56 E-value=0.00055 Score=71.80 Aligned_cols=97 Identities=21% Similarity=0.136 Sum_probs=52.4
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhc--CCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIK--QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKL 225 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~--~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~ 225 (710)
+++.|+||||+.... ...+.++. ..+. .++ -+++|+++.... .++.++++.+... ...-+|+||+
T Consensus 183 ~dlvIiDT~G~~~~~--------~~~~~el~-~~l~~~~~~-~~~lVl~at~~~--~~~~~~~~~~~~l-~~~giVltk~ 249 (296)
T 2px0_A 183 YDHVFVDTAGRNFKD--------PQYIDELK-ETIPFESSI-QSFLVLSATAKY--EDMKHIVKRFSSV-PVNQYIFTKI 249 (296)
T ss_dssp SSEEEEECCCCCTTS--------HHHHHHHH-HHSCCCTTE-EEEEEEETTBCH--HHHHHHTTTTSSS-CCCEEEEECT
T ss_pred CCEEEEeCCCCChhh--------HHHHHHHH-HHHhhcCCC-eEEEEEECCCCH--HHHHHHHHHHhcC-CCCEEEEeCC
Confidence 589999999987431 12333332 2333 233 455666665432 3344455555432 3355678999
Q ss_pred cccCccccHHHHHhCCccccccceEEEEcCChhh
Q 005171 226 DIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQED 259 (710)
Q Consensus 226 Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nrs~~d 259 (710)
|....+..+..++.....| .-|+++..+-+.|
T Consensus 250 D~~~~~g~~~~~~~~~~~p--i~~i~~ge~vp~d 281 (296)
T 2px0_A 250 DETTSLGSVFNILAESKIG--VGFMTNGQNVPED 281 (296)
T ss_dssp TTCSCCHHHHHHHHTCSCC--CSEECCSSCTTTS
T ss_pred CcccchhHHHHHHHHHCcC--EEEEECCCCChHH
Confidence 9887665555555433233 3455544443334
No 219
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.46 E-value=0.00052 Score=75.82 Aligned_cols=78 Identities=27% Similarity=0.207 Sum_probs=43.3
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.+++||||||..... ......+..+ .++..++. +++|+++... ++++..++.+.+.-.-+-+|+||+|.
T Consensus 184 ~D~VIIDTpG~l~~~-----~~l~~~L~~~--~~~~~p~~-vllVvda~~g---~~~~~~~~~f~~~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVD-----EAMMDEIKQV--HASINPVE-TLFVVDAMTG---QDAANTAKAFNEALPLTGVVLTKVDG 252 (433)
T ss_dssp CSEEEEECCCCCTTC-----HHHHHHHHHH--HHHSCCSE-EEEEEETTBC---TTHHHHHHHHHHHSCCCCEEEECTTS
T ss_pred CCEEEEECCCccccc-----HHHHHHHHHH--HHhhcCcc-eeEEeecchh---HHHHHHHHHHhccCCCeEEEEecCCC
Confidence 479999999975431 1122222222 33446664 4455555532 45566666665422224579999998
Q ss_pred cCccccHHH
Q 005171 228 MDRGTDARN 236 (710)
Q Consensus 228 ~~~~~~~~~ 236 (710)
...+..+..
T Consensus 253 ~~~~g~~l~ 261 (433)
T 2xxa_A 253 DARGGAALS 261 (433)
T ss_dssp SSCCTHHHH
T ss_pred CccHHHHHH
Confidence 765543333
No 220
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.34 E-value=0.00052 Score=72.04 Aligned_cols=82 Identities=22% Similarity=0.256 Sum_probs=45.4
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.++.||||||...... ...+...++.+ .. +..++.++| |+++.. ..+++..++.+.+.-.-+.+|+||+|.
T Consensus 181 ~D~ViIDTpg~~~~~~---~~~l~~el~~i-~~-~~~~d~vll-Vvda~~---g~~~~~~~~~~~~~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGE---EAALLEEMKNI-YE-AIKPDEVTL-VIDASI---GQKAYDLASKFNQASKIGTIIITKMDG 251 (297)
T ss_dssp CSEEEEECCCSCCTTC---HHHHHHHHHHH-HH-HHCCSEEEE-EEEGGG---GGGHHHHHHHHHHTCTTEEEEEECGGG
T ss_pred CCEEEEeCCCCccccc---HHHHHHHHHHH-HH-HhcCCEEEE-EeeCCc---hHHHHHHHHHHHhhCCCCEEEEeCCCC
Confidence 4799999999865100 11122222222 12 235664444 455543 245566677665532337789999998
Q ss_pred cCccccHHHHH
Q 005171 228 MDRGTDARNLL 238 (710)
Q Consensus 228 ~~~~~~~~~~l 238 (710)
...+..+..+.
T Consensus 252 ~~~~g~~~~~~ 262 (297)
T 1j8m_F 252 TAKGGGALSAV 262 (297)
T ss_dssp CTTHHHHHHHH
T ss_pred CcchHHHHHHH
Confidence 76555444443
No 221
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.32 E-value=0.00018 Score=75.92 Aligned_cols=97 Identities=22% Similarity=0.234 Sum_probs=52.1
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHH---Hhc-CCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMS---YIK-QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~---yi~-~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlT 223 (710)
+++.|+||||.... ...+...++.+..- .+. .++ .+++|+++. +..+++..++.+.....-+-+|+|
T Consensus 187 ~dvvIiDtpg~~~~-----~~~l~~eL~~l~~~i~~~i~~~p~-~vllVlda~---t~~~~l~~a~~~~~~~~i~gvVlT 257 (306)
T 1vma_A 187 KDVVIIDTAGRLHT-----KKNLMEELRKVHRVVKKKIPDAPH-ETLLVIDAT---TGQNGLVQAKIFKEAVNVTGIILT 257 (306)
T ss_dssp CSEEEEEECCCCSC-----HHHHHHHHHHHHHHGGGTCTTCCS-EEEEEEEGG---GHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CCEEEEECCCchhh-----HHHHHHHHHHHHHHHhhccCCCCc-EEEEEEECC---CCHHHHHHHHHHHhcCCCCEEEEe
Confidence 57999999996322 12222233332211 122 355 455666665 234455555554433345667899
Q ss_pred cccccCccccHHHHHhCCccccccceEEEEcC
Q 005171 224 KLDIMDRGTDARNLLLGKVIPLRLGYVGVVNR 255 (710)
Q Consensus 224 K~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nr 255 (710)
|+|....+..+.++.... .+..-|+++-.+
T Consensus 258 k~D~~~~gG~~l~~~~~~--~~Pi~~i~~Ge~ 287 (306)
T 1vma_A 258 KLDGTAKGGITLAIAREL--GIPIKFIGVGEK 287 (306)
T ss_dssp CGGGCSCTTHHHHHHHHH--CCCEEEEECSSS
T ss_pred CCCCccchHHHHHHHHHH--CCCEEEEeCCCC
Confidence 999887766555544322 234456666544
No 222
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.28 E-value=0.00063 Score=71.64 Aligned_cols=100 Identities=20% Similarity=0.188 Sum_probs=54.4
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
++.++||+|..... ...+..+..+...+.+..+..|+ .+|++.++... .+++..++.+......+++|+||.|..
T Consensus 186 d~~llDt~G~~~~~-~~~~~eLs~~r~~iaRal~~~P~-~~lLvLDa~t~---~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 186 DLLFVDTAGRLHTK-HNLMEELKKVKRAIAKADPEEPK-EVWLVLDAVTG---QNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp SEEEECCCCCCTTC-HHHHHHHHHHHHHHHHHCTTCCS-EEEEEEETTBC---THHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred CEEEecCCCCCCch-HHHHHHHHHHHHHHHHhhcCCCC-eEEEEEcHHHH---HHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 57799999985431 11123333333333334444666 55556665543 334455555433324589999999987
Q ss_pred CccccHHHHHhCCccccccceEEEEcC
Q 005171 229 DRGTDARNLLLGKVIPLRLGYVGVVNR 255 (710)
Q Consensus 229 ~~~~~~~~~l~~~~~~l~lG~~~V~nr 255 (710)
..+..+..+... ..+..-|+|+-.+
T Consensus 261 a~gg~~l~i~~~--~~~pi~~ig~Ge~ 285 (304)
T 1rj9_A 261 AKGGVLIPIVRT--LKVPIKFVGVGEG 285 (304)
T ss_dssp CCCTTHHHHHHH--HCCCEEEEECSSS
T ss_pred ccccHHHHHHHH--HCCCeEEEeCCCC
Confidence 665555444322 2344566665544
No 223
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.22 E-value=0.00074 Score=74.73 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
..--|+|+|.+++|||+|||.|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3445899999999999999999974
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.15 E-value=0.0013 Score=70.03 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=45.7
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
++.++||+|..... ......+..+. +.+ .++- .++|.++.. .++++..++.+.....-+++|+||+|..
T Consensus 213 d~vliDtaG~~~~~-----~~l~~eL~~i~-ral-~~de-~llvLDa~t---~~~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 213 DVVLIDTAGRSETN-----RNLMDEMKKIA-RVT-KPNL-VIFVGDALA---GNAIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp SEEEEEECCSCCTT-----TCHHHHHHHHH-HHH-CCSE-EEEEEEGGG---TTHHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred hhhHHhhccchhHH-----HHHHHHHHHHH-HHh-cCCC-CEEEEecHH---HHHHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 57899999986432 12223333332 223 2443 444444433 2566777777765446689999999986
Q ss_pred CccccHHHHH
Q 005171 229 DRGTDARNLL 238 (710)
Q Consensus 229 ~~~~~~~~~l 238 (710)
..+..+..++
T Consensus 282 a~~G~~l~~~ 291 (328)
T 3e70_C 282 ARGGAALSIS 291 (328)
T ss_dssp SCCHHHHHHH
T ss_pred cchhHHHHHH
Confidence 6555444443
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.14 E-value=0.0074 Score=63.89 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=51.6
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHH---HHHHHhc-CCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeec
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRT---MIMSYIK-QPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIIT 223 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~---lv~~yi~-~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlT 223 (710)
.+++||||||..... ......+.. .+...+. .++ -+++|+++.. ..+++..++.+.+...-+=+|+|
T Consensus 192 yD~VIIDTpg~l~~~-----~~l~~eL~~~~~vi~~~~p~~~d-~vllVl~a~~---~~~~l~~~~~~~~~~~i~GvVlt 262 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNK-----TNLMAELEKMNKIIQQVEKSAPH-EVLLVIDATT---GQNGVIQAEEFSKVADVSGIILT 262 (320)
T ss_dssp CSEEEEECCCCGGGH-----HHHHHHHHHHHHHHHTTCTTCCS-EEEEEEEGGG---THHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCEEEEcCCCccccc-----HHHHHHHHHHHHHHhcccCCCCc-eEEEEEECCC---cHHHHHHHHHHhhcCCCcEEEEe
Confidence 579999999976431 111112221 1211222 344 4556666553 25566667777654444557899
Q ss_pred cccccCccccHHHHHhCCccccccceEEEEcC
Q 005171 224 KLDIMDRGTDARNLLLGKVIPLRLGYVGVVNR 255 (710)
Q Consensus 224 K~Dl~~~~~~~~~~l~~~~~~l~lG~~~V~nr 255 (710)
|+|....+..+..+..... +..-|+++-.+
T Consensus 263 k~d~~~~~g~~~~~~~~~~--~Pi~~i~~Ge~ 292 (320)
T 1zu4_A 263 KMDSTSKGGIGLAIKELLN--IPIKMIGVGEK 292 (320)
T ss_dssp CGGGCSCTTHHHHHHHHHC--CCEEEEECSSS
T ss_pred CCCCCCchhHHHHHHHHHC--cCEEEEeCCCC
Confidence 9998766555444443222 23346655443
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.02 E-value=0.0013 Score=72.46 Aligned_cols=79 Identities=27% Similarity=0.269 Sum_probs=44.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.+++||||||..... ..+...+..+ ...+ .++.+ ++|+++.. .++++..++.+.+.-..+-+|+||+|.
T Consensus 181 ~DvVIIDTaG~l~~d-----~~l~~el~~i-~~~~-~pd~v-lLVvDa~t---gq~av~~a~~f~~~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 181 RDLILVDTAGRLQID-----EPLMGELARL-KEVL-GPDEV-LLVLDAMT---GQEALSVARAFDEKVGVTGLVLTKLDG 249 (425)
T ss_dssp CSEEEEECCCCSSCC-----HHHHHHHHHH-HHHH-CCSEE-EEEEEGGG---TTHHHHHHHHHHHHTCCCEEEEESGGG
T ss_pred CCEEEEcCCCccccc-----HHHHHHHHHh-hhcc-CCceE-EEEEeccc---hHHHHHHHHHHHhcCCceEEEEeCcCC
Confidence 479999999975431 1122222222 2222 46544 45555543 356667776665433446779999998
Q ss_pred cCccccHHHH
Q 005171 228 MDRGTDARNL 237 (710)
Q Consensus 228 ~~~~~~~~~~ 237 (710)
...+..+..+
T Consensus 250 ~~~~g~alsi 259 (425)
T 2ffh_A 250 DARGGAALSA 259 (425)
T ss_dssp CSSCHHHHHH
T ss_pred cccHHHHHHH
Confidence 7655544444
No 227
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.65 E-value=0.0085 Score=64.42 Aligned_cols=85 Identities=22% Similarity=0.152 Sum_probs=45.9
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
+..++||.|+.... ...+.++..+...+.+..+.+++-++|++. +...+ |+...++.+......+++|+||.|..
T Consensus 242 d~~lldt~Gl~~~~-~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTN-YSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQAREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCC-HHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGG---GGHHHHHHHHHHTCCCEEEEESCTTC
T ss_pred HHHHHHhcCCChhh-hhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCC---CHHHHHHHHHHhcCCeEEEEecCccc
Confidence 46789999986432 111223333333333444456764455544 44332 33333444432234689999999987
Q ss_pred CccccHHHHH
Q 005171 229 DRGTDARNLL 238 (710)
Q Consensus 229 ~~~~~~~~~l 238 (710)
..+..+..+.
T Consensus 317 ~~gG~~lsi~ 326 (359)
T 2og2_A 317 ARGGCVVSVV 326 (359)
T ss_dssp SCTHHHHHHH
T ss_pred ccccHHHHHH
Confidence 7666555444
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.51 E-value=0.0088 Score=62.77 Aligned_cols=85 Identities=22% Similarity=0.152 Sum_probs=44.1
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeecccccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIM 228 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~ 228 (710)
+..++|+.|+.... ...+.++..+...+.+..+.+++-++|++. +...+ |+...++.+......+++++||.|..
T Consensus 185 d~~lldt~gl~~~~-~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTN-YSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQAREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCC-HHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGG---GGHHHHHHHHHHTCCCEEEEECCSSC
T ss_pred cchHHhcCCCCcch-hHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCc---CHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 46789999986432 111122332222222333445664455544 44333 22333444432234688999999987
Q ss_pred CccccHHHHH
Q 005171 229 DRGTDARNLL 238 (710)
Q Consensus 229 ~~~~~~~~~l 238 (710)
..+.....+.
T Consensus 260 ~~~g~~l~~~ 269 (302)
T 3b9q_A 260 ARGGCVVSVV 269 (302)
T ss_dssp SCTHHHHHHH
T ss_pred CccChheehH
Confidence 6665554443
No 229
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.46 E-value=0.01 Score=61.92 Aligned_cols=95 Identities=23% Similarity=0.226 Sum_probs=48.7
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
+++.||||||..... ......+..+.. .+ .++.++ +|+++.. ..+++..++.+.+.-.-.-+|+||+|.
T Consensus 181 ~D~viiDtpp~~~~d-----~~~~~~l~~~~~-~~-~~~~~~-lv~~~~~---~~~~~~~~~~~~~~~~i~givlnk~d~ 249 (295)
T 1ls1_A 181 RDLILVDTAGRLQID-----EPLMGELARLKE-VL-GPDEVL-LVLDAMT---GQEALSVARAFDEKVGVTGLVLTKLDG 249 (295)
T ss_dssp CCEEEEECCCCSSCC-----HHHHHHHHHHHH-HH-CCSEEE-EEEEGGG---THHHHHHHHHHHHHTCCCEEEEECGGG
T ss_pred CCEEEEeCCCCcccc-----HHHHHHHHHHhh-hc-CCCEEE-EEEeCCC---cHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 579999999965431 112223333322 22 465454 5555543 255556566554432335578999998
Q ss_pred cCccccHHHHHhCCccccccceEEEEcC
Q 005171 228 MDRGTDARNLLLGKVIPLRLGYVGVVNR 255 (710)
Q Consensus 228 ~~~~~~~~~~l~~~~~~l~lG~~~V~nr 255 (710)
...+..+.+++... .+..-|+++-.+
T Consensus 250 ~~~~g~~~~~~~~~--~~pi~~i~~g~~ 275 (295)
T 1ls1_A 250 DARGGAALSARHVT--GKPIYFAGVSEK 275 (295)
T ss_dssp CSSCHHHHHHHHHH--CCCEEEEC----
T ss_pred CccHHHHHHHHHHH--CcCEEEEeCCCC
Confidence 76665555554322 233345655433
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.48 E-value=0.0061 Score=64.13 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
-.++++|.+|||||||||+|+|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 479999999999999999999974
No 231
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.25 E-value=0.066 Score=59.01 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=18.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~ 68 (710)
+--|+|+|.+++|||+|+|.|+
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 3357799999999999999776
No 232
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.85 E-value=0.13 Score=53.31 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 173 RIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 173 ~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
.....+.+++.+++ +|+.|++|........ ..+.+.+ .+++.++|+||+|+.+.
T Consensus 12 ka~~~~~~~l~~aD-vVl~VvDAr~p~~~~~-~~l~~~l--~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 12 KARREVTEKLKLID-IVYELVDARIPMSSRN-PMIEDIL--KNKPRIMLLNKADKADA 65 (282)
T ss_dssp HHHHHHHHHGGGCS-EEEEEEETTSTTTTSC-HHHHHHC--SSSCEEEEEECGGGSCH
T ss_pred HHHHHHHHHHhhCC-EEEEEEeCCCCCccCC-HHHHHHH--CCCCEEEEEECcccCCH
Confidence 34566678899998 6777778876665542 1233333 46899999999999863
No 233
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.99 E-value=0.022 Score=56.00 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-|+|+|+.|||||||++.|++.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 45899999999999999999975
No 234
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.65 E-value=0.027 Score=54.87 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|+|+.|||||||++.|+|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999985
No 235
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.62 E-value=0.028 Score=53.73 Aligned_cols=22 Identities=14% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 236
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.61 E-value=0.026 Score=54.88 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=25.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC--CCccCCCccccce
Q 005171 50 VAVVGSQSSGKSSVLEALVGRD--FLPRGNDICTRRP 84 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~~--~lP~~~g~~Tr~p 84 (710)
|||+|++||||+||++.|+... -+......+||.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999998642 1223334455544
No 237
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.50 E-value=0.048 Score=58.48 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..|||||||||+|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 69999999999999999999974
No 238
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.37 E-value=0.032 Score=54.60 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++++|+.|||||||++.|.|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999996
No 239
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.15 E-value=0.04 Score=52.94 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++++|+.|||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999986
No 240
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.07 E-value=0.054 Score=56.56 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..|||||||||+|.|..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 58999999999999999999975
No 241
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.01 E-value=0.046 Score=54.98 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||++.|.|..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999973
No 242
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.96 E-value=0.3 Score=46.84 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=34.5
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCC--CCCcEEEeeccc
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADP--DGYRTIGIITKL 225 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp--~g~rtI~VlTK~ 225 (710)
.+++|||+||.... .....+..++.+|+.+.+...+......+++++.+.. .+.+..+|+||+
T Consensus 76 yD~viiD~~~~~~~---------------~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 76 YDFAIVDGAGSLSV---------------ITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp SSEEEEECCSSSSH---------------HHHHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCEEEEECCCCCCH---------------HHHHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 47999999985421 1223344466555444443322111122334444331 134668899999
Q ss_pred ccc
Q 005171 226 DIM 228 (710)
Q Consensus 226 Dl~ 228 (710)
|.-
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 854
No 243
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.92 E-value=0.041 Score=54.78 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
-++|+|+.|||||||++.|+|..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999999963
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.86 E-value=0.043 Score=53.01 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+++|..|||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999986
No 245
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.79 E-value=0.054 Score=58.11 Aligned_cols=28 Identities=29% Similarity=0.576 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
.|+|+|..|||||||+++|+|. +|...|
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~--~~~~~g 204 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE--IPFDQR 204 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT--SCTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc--CCCCce
Confidence 3999999999999999999996 344444
No 246
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=92.78 E-value=0.11 Score=55.35 Aligned_cols=69 Identities=16% Similarity=0.309 Sum_probs=47.1
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCC---------CcccchHHHHHHHhh----CCC
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN---------SDLANSDALQIAGIA----DPD 214 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~---------~d~~~~~~l~la~~~----dp~ 214 (710)
..+.+|||+| ++..+.+...|.++++++|+++.-.. ..-.-.++..+...+ ...
T Consensus 161 v~l~iwDtaG-------------Qe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~ 227 (340)
T 4fid_A 161 IPFHLIDVGG-------------QRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK 227 (340)
T ss_dssp CEEEEEECCS-------------CHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT
T ss_pred eeeccccCCC-------------cccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC
Confidence 5799999999 35788899999999997777765431 111112233333333 224
Q ss_pred CCcEEEeeccccccC
Q 005171 215 GYRTIGIITKLDIMD 229 (710)
Q Consensus 215 g~rtI~VlTK~Dl~~ 229 (710)
+.++|+|+||+|+..
T Consensus 228 ~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 228 GAVKLIFLNKMDLFE 242 (340)
T ss_dssp TSEEEEEEECHHHHH
T ss_pred CCeEEEEEECchhhh
Confidence 678999999999974
No 247
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.76 E-value=0.056 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+|+|+.|||||||++.|++.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999986
No 248
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.74 E-value=0.051 Score=54.25 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999973
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.74 E-value=0.045 Score=54.24 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|+|+.|||||||++.|+|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3899999999999999999995
No 250
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.70 E-value=0.058 Score=51.52 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+++|..|||||||++.|.|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999997
No 251
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.69 E-value=0.046 Score=52.49 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005171 50 VAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~ 70 (710)
|+|+|..|||||||++.|+|.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999986
No 252
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.50 E-value=0.049 Score=58.54 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=41.8
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc---------ccchHHHHHHHhhCC----C
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD---------LANSDALQIAGIADP----D 214 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d---------~~~~~~l~la~~~dp----~ 214 (710)
..+.||||+|- +..+.+...|.++.+++|+++...+-| -.-.++..+...+.. .
T Consensus 201 ~~l~i~Dt~Gq-------------~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 201 VPFKMVDVGGQ-------------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp EEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred eEEEEEeccch-------------hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 57999999993 356677778999998777766554422 111233344443322 3
Q ss_pred CCcEEEeeccccccC
Q 005171 215 GYRTIGIITKLDIMD 229 (710)
Q Consensus 215 g~rtI~VlTK~Dl~~ 229 (710)
+.++|+|+||+|+..
T Consensus 268 ~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 268 NVSIILFLNKTDLLE 282 (362)
T ss_dssp TSEEEEEEECHHHHH
T ss_pred CCCEEEEEEChhhhh
Confidence 689999999999964
No 253
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.48 E-value=0.062 Score=53.32 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++++|+.|||||||++.|+|.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3889999999999999999997
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.46 E-value=0.044 Score=53.62 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+|+|.+|||||||++.|.|.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999986
No 255
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.45 E-value=0.061 Score=54.15 Aligned_cols=23 Identities=52% Similarity=0.625 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||++.|+|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999973
No 256
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=92.43 E-value=0.07 Score=56.51 Aligned_cols=69 Identities=12% Similarity=0.208 Sum_probs=47.2
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecC---------CCcccchHHHHHHHhhCC----C
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPA---------NSDLANSDALQIAGIADP----D 214 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a---------~~d~~~~~~l~la~~~dp----~ 214 (710)
..+.+|||.| ++..+.+...|.++++++|+++.-. +..-.-.+++.+.+.+.. .
T Consensus 167 v~l~iwDtgG-------------Qe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~ 233 (327)
T 3ohm_A 167 VIFRMVDVGG-------------QRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233 (327)
T ss_dssp EEEEEEEECC-------------SHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eeeEEEEcCC-------------chhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence 5799999999 3577888889999999777776322 111111234445444432 3
Q ss_pred CCcEEEeeccccccC
Q 005171 215 GYRTIGIITKLDIMD 229 (710)
Q Consensus 215 g~rtI~VlTK~Dl~~ 229 (710)
+.++|+|+||+|+.+
T Consensus 234 ~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 234 NSSVILFLNKKDLLE 248 (327)
T ss_dssp TCEEEEEEECHHHHH
T ss_pred CceEEEEEECchhhh
Confidence 578999999999974
No 257
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.40 E-value=0.052 Score=57.56 Aligned_cols=27 Identities=26% Similarity=0.565 Sum_probs=22.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 50 VAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
++|+|..|||||||+++|+|. +|...|
T Consensus 174 v~i~G~~GsGKTTll~~l~g~--~~~~~g 200 (330)
T 2pt7_A 174 VIVCGGTGSGKTTYIKSIMEF--IPKEER 200 (330)
T ss_dssp EEEEESTTSCHHHHHHHGGGG--SCTTSC
T ss_pred EEEECCCCCCHHHHHHHHhCC--CcCCCc
Confidence 999999999999999999996 344444
No 258
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.39 E-value=0.066 Score=54.08 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
-.++++|+.|||||||++.|.|.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999973
No 259
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.37 E-value=0.064 Score=54.16 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||++.|.|.-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999973
No 260
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.33 E-value=0.064 Score=55.05 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++++|+.|||||||++.|.|.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4899999999999999999997
No 261
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.30 E-value=0.06 Score=60.59 Aligned_cols=30 Identities=30% Similarity=0.539 Sum_probs=24.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCCccCCCccc
Q 005171 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~~~lP~~~g~~T 81 (710)
|+|+|.+||||||+|++|+|. +|.+.+.+|
T Consensus 263 i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 999999999999999999985 455555433
No 262
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.28 E-value=0.067 Score=53.52 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++++|+.|||||||++.|+|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999997
No 263
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.24 E-value=0.068 Score=51.25 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
..|.|+|+|..|||||||++.|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3688999999999999999999975
No 264
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.23 E-value=0.068 Score=54.71 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++++|+.|||||||++.|.|.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999997
No 265
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.21 E-value=0.068 Score=55.18 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++++|+.|||||||++.|.|.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999997
No 266
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.18 E-value=0.068 Score=54.47 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||++.|.|.-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999973
No 267
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.13 E-value=0.07 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||++.|+|.-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999973
No 268
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=92.10 E-value=0.039 Score=59.13 Aligned_cols=70 Identities=16% Similarity=0.243 Sum_probs=46.7
Q ss_pred ccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc---------cchHHHHHHHhhCC----
Q 005171 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL---------ANSDALQIAGIADP---- 213 (710)
Q Consensus 147 ~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~---------~~~~~l~la~~~dp---- 213 (710)
...+.+|||+|- +..+.+...|.++++++|+++...+.|- .-.++..+...+..
T Consensus 192 ~~~l~iwDt~GQ-------------e~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQ-------------RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCS-------------GGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCc-------------hhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 357999999993 2456677789999997777765544221 11233444444432
Q ss_pred CCCcEEEeeccccccC
Q 005171 214 DGYRTIGIITKLDIMD 229 (710)
Q Consensus 214 ~g~rtI~VlTK~Dl~~ 229 (710)
.+.++|+|+||+|+..
T Consensus 259 ~~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 259 TDTSIILFLNKKDLFE 274 (353)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred cCCcEEEEEECcCchh
Confidence 3689999999999963
No 269
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.00 E-value=0.075 Score=53.98 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||++.|.|.-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999973
No 270
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.00 E-value=0.075 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||++.|.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999973
No 271
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.90 E-value=0.078 Score=54.34 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++++|+.|||||||++.|.|.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4889999999999999999997
No 272
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.89 E-value=0.079 Score=54.07 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||++.|+|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999973
No 273
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.88 E-value=0.08 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++++|+.|||||||++.|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999997
No 274
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.81 E-value=0.08 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++|+|+.|||||||++.|+|.-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48999999999999999999973
No 275
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.80 E-value=0.084 Score=50.03 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
-++++|..|||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 478999999999999998754
No 276
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.79 E-value=0.068 Score=54.68 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|+|+.|||||||+++|+|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 4899999999999999999995
No 277
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.75 E-value=0.085 Score=54.10 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||++.|+|..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999973
No 278
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.74 E-value=0.073 Score=50.18 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||++.|+|.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999999973
No 279
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.73 E-value=0.082 Score=54.39 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|+|+.||||||||+.|+|.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999997
No 280
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.65 E-value=0.16 Score=52.76 Aligned_cols=49 Identities=14% Similarity=0.008 Sum_probs=29.9
Q ss_pred CcchHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 22 GGSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 22 ~~~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
|..+-.++..|.+.+.+.-....-.-..|+|+|.+|||||||.+.|.+.
T Consensus 6 ~~~~~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 6 KTVLDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4444445555544333321011112345899999999999999999875
No 281
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.62 E-value=0.086 Score=53.64 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCCcc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDIC 80 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g~~ 80 (710)
.++++|+.|||||||++.|.|.- +-..|..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I 62 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH--RPIQGKI 62 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS--CCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEE
Confidence 48899999999999999999973 4344433
No 282
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.55 E-value=0.088 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999973
No 283
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.53 E-value=0.09 Score=54.35 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||++.|+|.-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999973
No 284
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.51 E-value=0.071 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+|+|..|||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999985
No 285
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.39 E-value=0.049 Score=52.13 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
+.|+|||..+||||||++.|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999986
No 286
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.24 E-value=0.14 Score=53.46 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005171 48 PQVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~ 68 (710)
-.++++|..|||||||||+|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999999
No 287
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.12 E-value=0.09 Score=55.11 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|||+.|||||||++.|+|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5899999999999999999985
No 288
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.11 E-value=0.094 Score=50.58 Aligned_cols=22 Identities=18% Similarity=0.370 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+++|..||||||+++.|.+.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999986
No 289
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.04 E-value=0.082 Score=55.45 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|||+.|||||||++.|+|.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999999996
No 290
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.03 E-value=0.13 Score=50.40 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCccCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGND 78 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~~~g 78 (710)
-++|+|+.|||||||++.|+|.-..|.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 489999999999999999998544444443
No 291
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.90 E-value=0.11 Score=53.10 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCcc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLPR 75 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP~ 75 (710)
.++++|+.|||||||++.|.|.. |.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~--p~ 56 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL--PY 56 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CC
Confidence 58899999999999999999984 64
No 292
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.82 E-value=0.26 Score=61.77 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|||+.|||||||++.|+|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 5999999999999999999996
No 293
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.82 E-value=0.072 Score=52.57 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005171 50 VAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~ 70 (710)
++++|+.|||||||++.|+|.
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999997
No 294
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.74 E-value=0.097 Score=49.60 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-.+|+|+.+||||||+++|.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999875
No 295
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.73 E-value=0.11 Score=48.77 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+++|..|||||||.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999875
No 296
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=90.67 E-value=0.48 Score=50.84 Aligned_cols=56 Identities=9% Similarity=-0.006 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 172 ARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 172 ~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
+.+++++..|.+..+ ++|+|+++.... ..+...++++.. +.++++|+||+|+.++.
T Consensus 57 e~f~~~l~~i~~~~~-~il~VvD~~d~~--~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 57 DDFLRILNGIGKSDA-LVVKIVDIFDFN--GSWLPGLHRFVG-NNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHHHHSCC-EEEEEEETTSHH--HHCCTTHHHHSS-SSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHHhccCc-EEEEEEECCCCc--ccHHHHHHHHhC-CCcEEEEEEChhcCCcc
Confidence 477888888888776 677777775421 111122233322 68899999999998653
No 297
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=90.46 E-value=0.1 Score=56.72 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=45.6
Q ss_pred cceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCc---------ccchHHHHHHHhhC----CC
Q 005171 148 LDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSD---------LANSDALQIAGIAD----PD 214 (710)
Q Consensus 148 ~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d---------~~~~~~l~la~~~d----p~ 214 (710)
..+.||||+|- +..+.+...|.++++++|+++.-.+-| -.-.++..+...+. ..
T Consensus 217 v~l~iwDtaGQ-------------e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 217 VNFHMFDVGGQ-------------RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp EEEEEEEECCS-------------GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred ccceecccchh-------------hhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 57999999993 345677788999999777766544311 11123334444432 23
Q ss_pred CCcEEEeeccccccC
Q 005171 215 GYRTIGIITKLDIMD 229 (710)
Q Consensus 215 g~rtI~VlTK~Dl~~ 229 (710)
..++|+|+||+|+..
T Consensus 284 ~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TISVILFLNKQDLLA 298 (402)
T ss_dssp SCCEEEEEECHHHHH
T ss_pred CCeEEEEEEChhhhh
Confidence 578999999999953
No 298
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.43 E-value=0.11 Score=55.79 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+|+|+.||||||||++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4999999999999999999986
No 299
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.41 E-value=0.12 Score=53.69 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||++.|+|.-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999973
No 300
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.40 E-value=0.11 Score=49.49 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
-|+++|..|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999999986
No 301
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=90.25 E-value=0.49 Score=50.73 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 172 ARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 172 ~~i~~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
+.+++++..|...++ +|+.|+++...... -.-.+.+.+. +.++++|+||+|+.++.
T Consensus 59 e~f~~~L~~~~~~~~-lil~VvD~~d~~~s-~~~~l~~~l~--~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 59 DDFLSMLHRIGESKA-LVVNIVDIFDFNGS-FIPGLPRFAA--DNPILLVGNKADLLPRS 114 (369)
T ss_dssp CHHHHHHHHHHHHCC-EEEEEEETTCSGGG-CCSSHHHHCT--TSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHhhccCc-EEEEEEECCCCCCc-hhhHHHHHhC--CCCEEEEEEChhcCCCc
Confidence 367777777777766 67777776643321 1112233332 58899999999998753
No 302
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.25 E-value=0.094 Score=52.02 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=15.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh-CC
Q 005171 49 QVAVVGSQSSGKSSVLEALV-GR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~-G~ 70 (710)
-|+++|..|||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999 86
No 303
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.24 E-value=0.12 Score=50.04 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-|+|+|..|||||||++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 35999999999999999999764
No 304
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.06 E-value=0.18 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHh---CCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALV---GRD 71 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~---G~~ 71 (710)
..|+|+|..|||||||++.|. |..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 479999999999999999999 874
No 305
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.06 E-value=0.12 Score=54.24 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.0
Q ss_pred CCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005171 45 IELP-QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 45 ~~lP-qIvVVG~qssGKSSLLnaL~G~ 70 (710)
+.-+ .|+|+|.+|||||||++.|.|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 3334 4789999999999999999986
No 306
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.02 E-value=0.13 Score=49.90 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+++|..|||||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 3899999999999999999985
No 307
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.78 E-value=0.17 Score=49.20 Aligned_cols=23 Identities=22% Similarity=0.592 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-|+|+|.+|||||||.+.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999864
No 308
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.73 E-value=0.16 Score=54.45 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.|||||||++.|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 48999999999999999999974
No 309
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.63 E-value=0.17 Score=54.23 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.||||||||+.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999974
No 310
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.54 E-value=0.16 Score=54.44 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.||||||||+.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48999999999999999999974
No 311
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.46 E-value=0.22 Score=47.12 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 24 ~l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.....++.+++.+..+... .-.-++++|++|+|||||+.+|.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~---~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 18 SQNRALLTIRVFVHNFNPE---EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHHHHSCCGG---GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccc---CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3555677777766655432 1235899999999999999999876
No 312
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.38 E-value=0.18 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48999999999999999999974
No 313
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.35 E-value=0.16 Score=47.79 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+++|..||||||+.+.|.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999998754
No 314
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.32 E-value=0.18 Score=54.04 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 48999999999999999999974
No 315
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.25 E-value=0.27 Score=47.70 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+|+|..|||||||++.|.+.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 316
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.25 E-value=0.19 Score=54.34 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 48999999999999999999974
No 317
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.25 E-value=0.22 Score=46.10 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 005171 48 PQVAVVGSQSSGKSSVLEAL 67 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL 67 (710)
+-|+|+|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999999
No 318
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.20 E-value=0.19 Score=54.22 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.||||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 48999999999999999999974
No 319
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.11 E-value=0.15 Score=54.53 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
-.++|+|..|||||||++.|.|.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999997
No 320
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.08 E-value=0.15 Score=55.74 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+|+|+.||||||+|++|+|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 3899999999999999999996
No 321
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=88.99 E-value=0.2 Score=53.97 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.||||||||+.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 48999999999999999999974
No 322
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=88.97 E-value=0.085 Score=56.49 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=44.0
Q ss_pred ccceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCC---------CcccchHHHHHHHhhC----C
Q 005171 147 VLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPAN---------SDLANSDALQIAGIAD----P 213 (710)
Q Consensus 147 ~~~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~---------~d~~~~~~l~la~~~d----p 213 (710)
...+.||||+|- +..+.+...|.++++++|+++.-.. ..-.-.++..+...+. .
T Consensus 182 ~v~l~iwDtaGQ-------------e~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQ-------------RNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCS-------------TTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCc-------------hhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 357999999993 2456677789999997777765330 1111122333443332 2
Q ss_pred CCCcEEEeeccccccC
Q 005171 214 DGYRTIGIITKLDIMD 229 (710)
Q Consensus 214 ~g~rtI~VlTK~Dl~~ 229 (710)
...++|+|+||+|+.+
T Consensus 249 ~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFE 264 (354)
T ss_dssp SSCEEEEEEECHHHHH
T ss_pred CCCeEEEEEECcchhh
Confidence 3578999999999964
No 323
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.95 E-value=0.25 Score=47.09 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|.|+|+|.+|||||||++.|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999864
No 324
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.91 E-value=0.16 Score=54.68 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+|+|.+||||||++++|+|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999985
No 325
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.91 E-value=0.093 Score=54.72 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=39.5
Q ss_pred ceEEEeCCCCCcCCCCCCchHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc-cchHHHHHHHhhCCCCCcEEEeeccccc
Q 005171 149 DITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDL-ANSDALQIAGIADPDGYRTIGIITKLDI 227 (710)
Q Consensus 149 ~LtLVDtPGl~~~~~~~q~~di~~~i~~lv~~yi~~~~~iIL~V~~a~~d~-~~~~~l~la~~~dp~g~rtI~VlTK~Dl 227 (710)
.+.+||| .. .++.+...|+++++++|++ .++.... .....-++...+...+.++++|+||+|+
T Consensus 64 ~~~iwD~--qe-------------r~~~l~~~~~~~ad~vilV-~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL 127 (301)
T 1u0l_A 64 SGVIENV--LH-------------RKNLLTKPHVANVDQVILV-VTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDL 127 (301)
T ss_dssp SEEEEEE--CC-------------CSCEETTTTEESCCEEEEE-ECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGG
T ss_pred eEEEEEE--cc-------------ccceeeccccccCCEEEEE-EeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHc
Confidence 6899998 11 2223445699999955554 4554332 2222222333333346899999999999
Q ss_pred cCc
Q 005171 228 MDR 230 (710)
Q Consensus 228 ~~~ 230 (710)
.+.
T Consensus 128 ~~~ 130 (301)
T 1u0l_A 128 YDE 130 (301)
T ss_dssp CCH
T ss_pred CCc
Confidence 754
No 326
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.83 E-value=0.18 Score=48.84 Aligned_cols=23 Identities=35% Similarity=0.265 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
..|+|+|..|||||||.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999876
No 327
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.77 E-value=0.18 Score=50.66 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+|+|..|||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 328
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.73 E-value=0.2 Score=49.04 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
..|+++|..||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 329
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.68 E-value=0.22 Score=46.23 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005171 48 PQVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~ 68 (710)
.-.+|+|+.++||||+|+||.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 367999999999999999986
No 330
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.60 E-value=0.26 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
..|+|+|..||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999864
No 331
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.44 E-value=0.17 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.||||||||+.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 48999999999999999999974
No 332
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.20 E-value=0.18 Score=50.92 Aligned_cols=24 Identities=29% Similarity=0.518 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHh---CCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALV---GRD 71 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~---G~~ 71 (710)
..|+|+|..|||||||++.|. |..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 469999999999999999999 864
No 333
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.12 E-value=0.14 Score=53.78 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
+|-++|+|..|||||||||.|+|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 6789999999999999999999863
No 334
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.96 E-value=0.23 Score=53.76 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.||||||||+.|.|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999999963
No 335
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.90 E-value=0.2 Score=52.31 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+|+|..|||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 336
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=87.83 E-value=0.27 Score=47.62 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=22.4
Q ss_pred CCCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005171 44 TIELP-QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 44 ~~~lP-qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+.-+ .|+|+|.+|||||||.+.|.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34444 4789999999999999999985
No 337
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.73 E-value=1.8 Score=47.44 Aligned_cols=33 Identities=27% Similarity=0.549 Sum_probs=26.2
Q ss_pred HHHHHhCCCCCCCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005171 34 DIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 34 d~~~~~g~~~~~~lP-qIvVVG~qssGKSSLLnaL~G~ 70 (710)
+.|..+|+ ..| -|.+.|++|+|||+|..||.+.
T Consensus 205 ~~f~~~g~----~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 205 EIFQRVGI----KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp HHHHHHCC----CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHhCCC----CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45566773 444 5999999999999999999764
No 338
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=87.62 E-value=0.29 Score=47.28 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|+++|..||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 339
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=87.57 E-value=0.24 Score=47.74 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|+|+|..||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 599999999999999999987
No 340
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.47 E-value=0.29 Score=48.46 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
-++++|+.|||||||+..|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 489999999999999999984
No 341
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.47 E-value=0.17 Score=54.14 Aligned_cols=23 Identities=22% Similarity=0.624 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.||||||||+.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999974
No 342
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.45 E-value=0.21 Score=55.31 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.-+.++|+|..|||||||++.|+|..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34679999999999999999999974
No 343
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.27 E-value=0.37 Score=49.41 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=25.2
Q ss_pred HHHHhCCCCCCCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005171 35 IFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 35 ~~~~~g~~~~~~lP-qIvVVG~qssGKSSLLnaL~G~ 70 (710)
+++.+|. ..| -|+++|++|+|||||+++|.|.
T Consensus 35 ~l~~~~l----~~~~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 35 QFKALGL----VTPAGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHTTC----CCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHcCC----CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4555553 333 3999999999999999999985
No 344
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=87.21 E-value=0.26 Score=47.60 Aligned_cols=23 Identities=43% Similarity=0.521 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
..|+|+|..|||||||.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999998643
No 345
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.09 E-value=0.36 Score=46.12 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+|+|..||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999753
No 346
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.08 E-value=1.7 Score=47.50 Aligned_cols=33 Identities=30% Similarity=0.697 Sum_probs=26.1
Q ss_pred HHHHHhCCCCCCCCCE-EEEEcCCCCcHHHHHHHHhCC
Q 005171 34 DIFAQLGSQSTIELPQ-VAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 34 d~~~~~g~~~~~~lPq-IvVVG~qssGKSSLLnaL~G~ 70 (710)
+.+..+| +..|+ |.+.|++|+|||++..||.+.
T Consensus 196 ~~~~~~g----~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 196 DLYEQIG----IDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp HHHHHHC----CCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHHHhCC----CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3455667 34554 999999999999999999764
No 347
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.99 E-value=0.22 Score=49.51 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+|+|..||||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999986
No 348
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=86.95 E-value=0.34 Score=45.30 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
-|+|+|.+||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 489999999999999999975
No 349
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=86.88 E-value=0.31 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~ 68 (710)
+..-.+|+|+.||||||||++|+
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 33468899999999999999988
No 350
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.85 E-value=0.19 Score=46.70 Aligned_cols=25 Identities=32% Similarity=0.419 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-..++++|+.|+|||+|+++|.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4456999999999999999999986
No 351
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=86.27 E-value=0.37 Score=45.14 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+|+|.+||||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999754
No 352
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=85.84 E-value=0.41 Score=45.16 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|+|+|.+||||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999864
No 353
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=85.84 E-value=0.38 Score=45.40 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=85.83 E-value=0.32 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+|+|.+|||||||++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 355
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.67 E-value=0.41 Score=54.07 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++++|..|||||||++.|.|.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999997
No 356
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.58 E-value=0.53 Score=47.10 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005171 50 VAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~ 70 (710)
|+++|++|+|||||+++|.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999985
No 357
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=85.56 E-value=0.48 Score=45.66 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
..|+++|.+||||||+...|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 358
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.35 E-value=3.2 Score=45.43 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=26.4
Q ss_pred HHHHHhCCCCCCCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005171 34 DIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 34 d~~~~~g~~~~~~lP-qIvVVG~qssGKSSLLnaL~G~ 70 (710)
+.|..+|+ ..| -|.+.|++|+|||++..||.+.
T Consensus 205 e~f~~~g~----~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 205 DKFKDMGI----RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp HHHHHHCC----CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHhCCC----CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 45566773 445 5999999999999999999865
No 359
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=85.12 E-value=3.5 Score=49.58 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 005171 49 QVAVVGSQSSGKSSVLEAL 67 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL 67 (710)
.++|+|+.++||||+|+.+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999999
No 360
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=85.09 E-value=0.52 Score=44.48 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~ 68 (710)
.+.|+++|.+||||||+...|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999995
No 361
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=84.99 E-value=0.5 Score=49.15 Aligned_cols=53 Identities=9% Similarity=0.120 Sum_probs=32.9
Q ss_pred HHHHHhcCCCeEEEEEecCCCc-ccchHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 177 MIMSYIKQPSCLILAVTPANSD-LANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 177 lv~~yi~~~~~iIL~V~~a~~d-~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
+.+.|+++.| .+++|++++.. ......-+++..+...+.+.++|+||+|+.++
T Consensus 72 l~r~~~~naD-~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 72 LIRPKVANVD-RVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp EETTEEESCC-EEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred HhHHHHHhcC-EEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc
Confidence 3445899998 55555566543 33332223333333357899999999999864
No 362
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=84.87 E-value=0.43 Score=54.42 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+++||+.|||||||++.|+|.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999999996
No 363
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=84.86 E-value=0.45 Score=54.24 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+++||+.|||||||++.|+|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999996
No 364
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=84.67 E-value=0.45 Score=53.80 Aligned_cols=22 Identities=36% Similarity=0.669 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+++||+.|||||||++.|+|.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4799999999999999999997
No 365
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=84.62 E-value=0.47 Score=44.96 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
-|+|+|.+||||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 366
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=84.59 E-value=0.39 Score=53.46 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
-.++|+|+.||||||||++|.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 35899999999999999999996
No 367
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=84.53 E-value=0.55 Score=44.66 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
-+.|+++|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999998653
No 368
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=84.41 E-value=0.42 Score=46.49 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-++|+|+.|+|||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999965
No 369
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.37 E-value=4.6 Score=43.72 Aligned_cols=33 Identities=27% Similarity=0.528 Sum_probs=26.2
Q ss_pred HHHHHhCCCCCCCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005171 34 DIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 34 d~~~~~g~~~~~~lP-qIvVVG~qssGKSSLLnaL~G~ 70 (710)
+.|..+|+ ..| -|.+.|++|+|||+|..|+.+.
T Consensus 172 e~f~~~gi----~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 172 ELFESLGI----AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp HHHHHHTC----CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHHHhCCC----CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 45666774 444 4999999999999999999864
No 370
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.32 E-value=0.54 Score=44.37 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005171 49 QVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~ 68 (710)
.|+++|..||||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999997
No 371
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=84.32 E-value=0.53 Score=45.91 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005171 48 PQVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~ 68 (710)
.-.+|+|+.++||||+++||.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 467999999999999999985
No 372
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.21 E-value=0.52 Score=45.12 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+++|..||||||+.+.|...
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5999999999999999999764
No 373
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.20 E-value=0.49 Score=54.26 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.||||||||+.|.|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999973
No 374
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=84.07 E-value=0.47 Score=44.75 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+++|..+|||||+.+.|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 375
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=83.99 E-value=0.56 Score=45.05 Aligned_cols=21 Identities=38% Similarity=0.367 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|+|.|..||||||+.+.|..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 376
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=83.81 E-value=0.27 Score=47.63 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+|+|..||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 377
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=83.80 E-value=0.57 Score=43.94 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
+.|+++|.+||||||+...|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3599999999999999999864
No 378
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=83.80 E-value=0.6 Score=45.31 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005171 49 QVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~ 68 (710)
.|+|+|.++|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999985
No 379
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=83.67 E-value=0.72 Score=46.92 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005171 50 VAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~ 70 (710)
|+++|++|+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999985
No 380
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=83.67 E-value=0.55 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..||||||||+.|.|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999999973
No 381
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.64 E-value=0.58 Score=44.43 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|++.|..||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999743
No 382
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=83.60 E-value=0.42 Score=54.73 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+++||+.|||||||++.|+|.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5999999999999999999996
No 383
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=83.43 E-value=0.41 Score=54.75 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+++||+.|||||||++.|+|.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999996
No 384
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=83.43 E-value=0.59 Score=43.99 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~ 68 (710)
.+.|+++|.+||||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3569999999999999999997
No 385
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=83.38 E-value=0.55 Score=53.07 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..|||||||++.|+|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999973
No 386
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=83.35 E-value=0.55 Score=44.33 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005171 48 PQVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~ 68 (710)
|.|+++|.+||||||+-..|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 569999999999999998884
No 387
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=83.23 E-value=0.43 Score=54.51 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+++||+.|||||||++.|+|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999996
No 388
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=83.20 E-value=0.38 Score=54.82 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+++||+.|||||||++.|+|.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999996
No 389
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=83.03 E-value=0.68 Score=43.93 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
+.|+++|..||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 390
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=83.02 E-value=0.47 Score=48.75 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-++|+|.+|+|||||+..|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4899999999999999999986
No 391
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=82.96 E-value=0.64 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++|+|..|||||||++.|+|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 392
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=82.96 E-value=0.68 Score=44.97 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|+|+|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999953
No 393
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.72 E-value=3.6 Score=44.88 Aligned_cols=32 Identities=25% Similarity=0.609 Sum_probs=25.6
Q ss_pred HHHHhCCCCCCCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005171 35 IFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 35 ~~~~~g~~~~~~lP-qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+..+| +..| -|.+.|++|+|||+|..||.+.
T Consensus 207 ~f~~~G----i~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 207 LYEEMG----IKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp HHHHHT----CCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred HHHhCC----CCCCCCCceECCCCchHHHHHHHHHHH
Confidence 455666 3444 4999999999999999999865
No 394
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=82.71 E-value=0.68 Score=43.86 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-|+++|..||||||+.+.|.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 395
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=82.55 E-value=0.61 Score=44.94 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
..|+|.|..||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999999964
No 396
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=82.51 E-value=1.8 Score=39.30 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 29 VNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 29 ~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
+.++.+.+..+. ..+.| |++.|++|+|||++..+|...
T Consensus 10 ~~~~~~~~~~~a---~~~~~-vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 10 INQYRRRLQQLS---ETDIA-VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHHHHT---TCCSC-EEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh---CCCCC-EEEECCCCCCHHHHHHHHHHh
Confidence 344444444443 23344 899999999999999999754
No 397
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=82.51 E-value=0.67 Score=43.80 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|++.|..||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 398
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=82.38 E-value=0.68 Score=42.98 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
+.|+++|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998853
No 399
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=82.34 E-value=0.65 Score=53.27 Aligned_cols=22 Identities=27% Similarity=0.589 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|+|..|||||||++.|.|.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999996
No 400
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=82.28 E-value=0.65 Score=44.76 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|+|+|..||||||+.+.|..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999974
No 401
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=82.21 E-value=0.73 Score=43.47 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|+++|.++|||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 402
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=82.15 E-value=0.78 Score=42.40 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|++.|..+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 403
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=81.87 E-value=0.14 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 005171 50 VAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~~ 71 (710)
++|+|+.||||||||++|.|..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4688999999999999999963
No 404
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=81.85 E-value=1.7 Score=40.16 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+-|+++|.+|+|||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999998764
No 405
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=81.80 E-value=0.73 Score=44.89 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|+|+|..||||||+.+.|..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 406
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.73 E-value=5.4 Score=43.94 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=26.4
Q ss_pred HHHHHhCCCCCCCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005171 34 DIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 34 d~~~~~g~~~~~~lP-qIvVVG~qssGKSSLLnaL~G~ 70 (710)
+.|..+|+ ..| -|.+.|++|+|||+|..||.+.
T Consensus 233 e~f~~~Gi----~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 233 ERFATLGI----DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp HHHHHHTC----CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHHHHCCC----CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 35667774 445 4999999999999999999864
No 407
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=81.63 E-value=0.82 Score=43.45 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
+.|+|+|..||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 408
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=81.42 E-value=0.7 Score=48.78 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005171 48 PQVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~ 68 (710)
.-.+|+|+.|+||||+++||.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999985
No 409
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=81.27 E-value=2.9 Score=50.10 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++|+|+.++||||+|+.+.+.
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 5899999999999999998643
No 410
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=81.08 E-value=1.5 Score=43.08 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=30.8
Q ss_pred CcchHHHHHHHHHHHHHhCCCCCCCCC---EEEEEcCCCCcHHHHHHHHhC
Q 005171 22 GGSVIPLVNKLQDIFAQLGSQSTIELP---QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 22 ~~~l~~~~~kl~d~~~~~g~~~~~~lP---qIvVVG~qssGKSSLLnaL~G 69 (710)
+-..+.++..|...+. | +| .|++.|++|+|||++..+|..
T Consensus 38 ~~~~~~f~~~l~~~~~--~------iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 38 QIEFITFLGALKSFLK--G------TPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp TCCHHHHHHHHHHHHH--T------CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh--c------CCcccEEEEECCCCCCHHHHHHHHHH
Confidence 3456677777777665 2 55 699999999999988888864
No 411
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=81.07 E-value=0.77 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 005171 50 VAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~~ 71 (710)
++++|..|||||||++.|.|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999999974
No 412
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=81.06 E-value=0.78 Score=43.74 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
..|+|+|..||||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 35899999999999999999854
No 413
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=80.88 E-value=1.2 Score=47.07 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|-++|.|..|+|||||++++.+.
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999875
No 414
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=80.85 E-value=0.88 Score=44.69 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
..|+|+|..||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999973
No 415
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=80.65 E-value=0.69 Score=49.19 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|..++|||||++.|+|..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999973
No 416
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=80.59 E-value=0.83 Score=43.01 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
+.|+++|..||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999853
No 417
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.48 E-value=0.74 Score=44.49 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
-++++|.+|+|||||+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999998
No 418
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=80.29 E-value=0.72 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G 69 (710)
-..|+++|..||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999965
No 419
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=80.22 E-value=0.76 Score=45.14 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCc
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDFLP 74 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~lP 74 (710)
-++|+|+.|+|||||+..|++.-.+|
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~ 51 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLP 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCc
Confidence 48999999999999999999853334
No 420
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=80.22 E-value=1 Score=43.16 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
|.|+|.|..||||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999854
No 421
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=80.18 E-value=0.81 Score=48.93 Aligned_cols=21 Identities=48% Similarity=0.727 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHh
Q 005171 48 PQVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~ 68 (710)
.-.+++|+.||||||+|+||.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 457999999999999999985
No 422
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=80.16 E-value=0.94 Score=43.46 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|+|+|.++|||||+.+.|..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999863
No 423
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=80.05 E-value=2 Score=40.83 Aligned_cols=38 Identities=18% Similarity=0.412 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 27 ~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
..++.|.+.+..- ..+.+++.|+.|+|||+++.++...
T Consensus 24 ~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 24 EVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp HHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3455666554421 2344999999999999999998753
No 424
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=80.00 E-value=0.74 Score=50.61 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++++|+.++|||||++.|.|..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 48999999999999999999973
No 425
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=80.00 E-value=0.78 Score=47.32 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHHhCCCCCCCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005171 24 SVIPLVNKLQDIFAQLGSQSTIELP-QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 24 ~l~~~~~kl~d~~~~~g~~~~~~lP-qIvVVG~qssGKSSLLnaL~G~ 70 (710)
++..+++++... .++......-| -|+++|.+||||||+...|...
T Consensus 11 ~~~~~~~~~~~~--~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 11 QFENRLNDNLEE--LIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHHH--HHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhccccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444555554432 23322223334 4789999999999999999753
No 426
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=79.96 E-value=0.94 Score=44.04 Aligned_cols=21 Identities=14% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|+|+|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 427
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=79.81 E-value=0.97 Score=43.34 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
..|+|+|..||||||+.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999873
No 428
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=79.71 E-value=0.76 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+++|.+|+|||||+++|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999974
No 429
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=79.58 E-value=0.96 Score=45.69 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
+-|+++|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 430
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=79.57 E-value=0.32 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.305 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
-.++++|..||||||||++|.+.
T Consensus 61 G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 61 GFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999765
No 431
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=79.47 E-value=0.92 Score=44.33 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999863
No 432
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=79.40 E-value=0.99 Score=45.50 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+|+|.++||||||-..|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4899999999999999999753
No 433
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=79.37 E-value=0.81 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
...++++|++|+|||||+++|.|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 345999999999999999999875
No 434
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=79.32 E-value=0.81 Score=48.91 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-.+++|+.|+||||+|++|.+.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHh
Confidence 35899999999999999999864
No 435
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=79.28 E-value=0.79 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++|+|+.|+||||||++|.+.-
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhh
Confidence 58999999999999999999863
No 436
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=79.19 E-value=0.86 Score=44.28 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+++|..||||||+...|.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 437
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=79.16 E-value=1.2 Score=43.52 Aligned_cols=22 Identities=18% Similarity=0.361 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
..|+|+|.++|||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 438
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=79.09 E-value=1.8 Score=45.10 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=33.6
Q ss_pred HHhcCCCeEEEEEecCCCc-ccchHHHHHHHhhCCCCCcEEEeeccccccCcc
Q 005171 180 SYIKQPSCLILAVTPANSD-LANSDALQIAGIADPDGYRTIGIITKLDIMDRG 231 (710)
Q Consensus 180 ~yi~~~~~iIL~V~~a~~d-~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~~ 231 (710)
..+.+.| .|+.|+++... +.....-+++..+...+.+.++|+||+|+.++.
T Consensus 82 ~~~anvD-~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 82 PPICNVD-QAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TTEECCC-EEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred HHHHhCC-EEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 3577887 56666677644 443332334444445679999999999999763
No 439
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=79.02 E-value=0.71 Score=43.33 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=15.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|+++|.+||||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp EEEEECCC----CHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 440
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=78.90 E-value=0.71 Score=48.29 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-.+++|+.||||||||++|...
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHHT
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999854
No 441
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=77.79 E-value=0.68 Score=57.97 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|++||++|||||||++.|+|.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999985
No 442
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=77.75 E-value=1.3 Score=43.50 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|+|+|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999863
No 443
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=77.73 E-value=1 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G 69 (710)
.|.++|+|.++||||++|++|+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 58899999999999999999975
No 444
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=77.52 E-value=1.3 Score=41.13 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHh
Q 005171 47 LPQVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~ 68 (710)
.--|+|.|..||||||+-..|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 3459999999999999999884
No 445
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=77.45 E-value=0.79 Score=55.23 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.++|+|..||||||||+.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 446
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=77.12 E-value=1.3 Score=43.99 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|++.|..||||||+++.|...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 447
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=76.97 E-value=1.1 Score=45.53 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCeEEEEEecCCCcccchHHHHHHHhhCCCCCcEEEeeccccccCc
Q 005171 176 TMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMDR 230 (710)
Q Consensus 176 ~lv~~yi~~~~~iIL~V~~a~~d~~~~~~l~la~~~dp~g~rtI~VlTK~Dl~~~ 230 (710)
..+...+.+.| +|+.|++|......... .+. +- +++.++|+||+|+.++
T Consensus 13 ~~~~~~l~~~D-~vl~VvDar~P~~~~~~-~l~--ll--~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 13 RQIKDLLRLVN-TVVEVRDARAPFATSAY-GVD--FS--RKETIILLNKVDIADE 61 (262)
T ss_dssp HHHHHHHTTCS-EEEEEEETTSTTTTSCT-TSC--CT--TSEEEEEEECGGGSCH
T ss_pred HHHHHHHhhCC-EEEEEeeCCCCCcCcCh-HHH--hc--CCCcEEEEECccCCCH
Confidence 45567888998 67777777766544321 111 22 7899999999999874
No 448
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=76.59 E-value=1.5 Score=43.90 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
..|+++|.+||||||+...|..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999963
No 449
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=76.57 E-value=1.3 Score=42.75 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G 69 (710)
.-..|+++|..+|||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999998864
No 450
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.38 E-value=0.99 Score=47.26 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
..|.++++|+.|+||||++.+|.+.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4566999999999999999999884
No 451
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=76.36 E-value=1.7 Score=45.66 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
+-|+|+|+++||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 46899999999999999999754
No 452
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=76.12 E-value=1.1 Score=45.68 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
-++|+|..|+|||||+..|++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999986
No 453
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=76.06 E-value=2.8 Score=42.78 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=24.2
Q ss_pred HhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 38 QLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 38 ~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
..|+...-...-|++.|++|+|||++..+|...
T Consensus 58 ~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 58 KLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 455443334446999999999999999877643
No 454
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=75.88 E-value=0.93 Score=45.57 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=21.5
Q ss_pred CCCC-EEEEEcCCCCcHHHHHHHHhCC
Q 005171 45 IELP-QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 45 ~~lP-qIvVVG~qssGKSSLLnaL~G~ 70 (710)
..-| .|+++|.+||||||+...|...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4444 5889999999999999999764
No 455
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=75.74 E-value=1.6 Score=42.97 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
..|+++|..+|||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 456
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=75.46 E-value=1.2 Score=55.67 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+++||+.|||||||++.|.|.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999996
No 457
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=75.39 E-value=1.3 Score=44.34 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+++|++|+|||+++.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
No 458
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=75.35 E-value=1.6 Score=42.52 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
..|+|+|.++|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999853
No 459
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=74.98 E-value=1.8 Score=42.05 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 27 ~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.++..|...... + .-+-|++.|++|+|||+++.+|...
T Consensus 38 ~~~~~l~~~~~~-~-----~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 38 ELIGALKSAASG-D-----GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp HHHHHHHHHHHT-C-----SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-C-----CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 455555554331 1 3466999999999999999999754
No 460
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.72 E-value=2.5 Score=44.16 Aligned_cols=38 Identities=24% Similarity=0.531 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 27 PLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 27 ~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+++.|...+.. | .+|.+++.|+.|+||||++.+|.+.
T Consensus 32 ~~~~~L~~~i~~-g-----~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 32 EVITTVRKFVDE-G-----KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHHHHT-T-----CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-C-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 355555554431 2 3566999999999999999999876
No 461
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=74.42 E-value=2.5 Score=44.73 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
+-|+|+|.++||||+|-..|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999865
No 462
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=74.30 E-value=1.7 Score=43.49 Aligned_cols=21 Identities=48% Similarity=0.525 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|+|+|.+||||||+.+.|..
T Consensus 11 ~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999973
No 463
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=74.15 E-value=1.5 Score=40.59 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+-|+++|.+|+|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998754
No 464
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=74.13 E-value=3.7 Score=43.70 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 26 IPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 26 ~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
-.+++++.+.++.. +. .-..+.|+++|..|+||||+..+|.+.
T Consensus 5 ~~L~~~il~~l~~~-i~-~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 5 HKLADDVLQLLDNR-IE-DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHHHHHHT-TT-TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hc-cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 34555554444321 11 124578999999999999999988764
No 465
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=74.10 E-value=1.6 Score=43.62 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
..|+|.|.++|||||+-+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998854
No 466
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=74.04 E-value=1.7 Score=44.49 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 467
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=73.93 E-value=1.5 Score=43.27 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G 69 (710)
...|+|+|..||||||+.+.|.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999875
No 468
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=73.82 E-value=4 Score=40.35 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
+-|++.|++|+|||++..+|...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 469
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=73.79 E-value=1.6 Score=44.79 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005171 49 QVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~ 68 (710)
.|+|+|..||||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999997
No 470
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=73.48 E-value=1.8 Score=41.27 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 25 VIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 25 l~~~~~kl~d~~~~~g~~~~~~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
...++..+.+.+...... ....-|++.|++|+|||+|+.+|...
T Consensus 34 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPG--KKMKGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp HHHHHHHHHHHHHHCCSS--CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc--cCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344566666665544311 12256999999999999999999864
No 471
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=73.06 E-value=1.9 Score=45.17 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
+-|+|+|+++||||+|...|...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 45789999999999999999743
No 472
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=73.03 E-value=1 Score=51.04 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+++|..|||||||+++|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 4889999999999999999986
No 473
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=72.80 E-value=1.5 Score=52.79 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRDF 72 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~~ 72 (710)
.++++|..|||||||++.|.|..+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 489999999999999999996433
No 474
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=72.38 E-value=2.2 Score=38.65 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 005171 50 VAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 50 IvVVG~qssGKSSLLnaL~G~ 70 (710)
|.+.|++|+|||++..+|...
T Consensus 30 vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCT
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 999999999999999998664
No 475
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=71.93 E-value=4.3 Score=41.80 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
+-++|.|..++|||||++.+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 476
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=71.90 E-value=1.2 Score=51.58 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 005171 49 QVAVVGSQSSGKSSVLEALV 68 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~ 68 (710)
.++|+|..|||||||++.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 48999999999999998765
No 477
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=71.30 E-value=2 Score=48.70 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G 69 (710)
.|.++|+|.++||||++|++|+-
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999999875
No 478
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=71.05 E-value=2.2 Score=41.81 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-|+++|.+++|||+|...|..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999866
No 479
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=70.96 E-value=2.1 Score=45.89 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhCCC
Q 005171 46 ELPQVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 46 ~lPqIvVVG~qssGKSSLLnaL~G~~ 71 (710)
.-+-++|+|.+|+|||++++.|++.-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45779999999999999999999763
No 480
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=70.93 E-value=2 Score=53.64 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+++||..|||||||++.|.|.
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999996
No 481
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=70.82 E-value=2.3 Score=40.85 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-++|.|..|+|||+++.++...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 482
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=70.45 E-value=3.1 Score=46.85 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=23.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 44 TIELPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 44 ~~~lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.+.-+-++++|++|+|||||+.+|.+.
T Consensus 105 ~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 105 SLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp SCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 346678999999999999999999875
No 483
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=69.44 E-value=2.4 Score=41.99 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+|.|..||||||+.+.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 484
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=68.86 E-value=2.9 Score=40.85 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
.|+++|.+||||+|.-..|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988743
No 485
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=68.69 E-value=4.6 Score=40.64 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-|++.|++|+|||+|+.+|.+.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45999999999999999999764
No 486
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=68.63 E-value=2.5 Score=41.33 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 005171 49 QVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G 69 (710)
-++|+|++|+|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999777654
No 487
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=68.53 E-value=2 Score=45.52 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
-+.|+|+.|+|||||+..|++.-
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999864
No 488
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=68.39 E-value=44 Score=34.53 Aligned_cols=24 Identities=13% Similarity=0.118 Sum_probs=20.2
Q ss_pred CCE-EEEEcCCCCcHHHHHHHHhCC
Q 005171 47 LPQ-VAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 47 lPq-IvVVG~qssGKSSLLnaL~G~ 70 (710)
+|. +++.|+.|+|||++..++...
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHH
Confidence 454 899999999999999988643
No 489
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=68.24 E-value=2.5 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-|+++|.+||||||+...|...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999999753
No 490
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=67.94 E-value=2.7 Score=44.47 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+|+|.++||||||...|...
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 6899999999999999998764
No 491
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=67.75 E-value=1.8 Score=43.63 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhCC
Q 005171 47 LPQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 47 lPqIvVVG~qssGKSSLLnaL~G~ 70 (710)
...|+|.|..||||||+.+.|...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 346999999999999999998754
No 492
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=67.41 E-value=4.6 Score=41.43 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=21.0
Q ss_pred CCCCCEE-EEEcCCCCcHHHHHHHHhCC
Q 005171 44 TIELPQV-AVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 44 ~~~lPqI-vVVG~qssGKSSLLnaL~G~ 70 (710)
....|.. .+.|++|+|||+|..+|...
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3556654 55699999999999999743
No 493
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=67.33 E-value=4.8 Score=41.44 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
+-++|.|..++|||||++.+...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 78999999999999999999754
No 494
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=66.97 E-value=5.3 Score=44.52 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+++|++|+|||+|+++|.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999986
No 495
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=66.80 E-value=7 Score=38.94 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|++.|++|+|||++..+|...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEECCCCCcHHHHHHHHHHh
Confidence 3899999999999999999764
No 496
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=66.47 E-value=3.3 Score=40.88 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=20.8
Q ss_pred CCCCCE-EEEEcCCCCcHHHHHHHHhCC
Q 005171 44 TIELPQ-VAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 44 ~~~lPq-IvVVG~qssGKSSLLnaL~G~ 70 (710)
.+.-|+ |+|+|.+||||+|.-..|...
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345555 567899999999998888743
No 497
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=66.29 E-value=1.7 Score=44.81 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=16.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVG 69 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G 69 (710)
+-|+|.|..|||||||.+.|..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 498
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=66.26 E-value=3.4 Score=45.83 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~ 70 (710)
-|+++|++|+|||+|+.+|.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999875
No 499
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=66.23 E-value=2.4 Score=44.32 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhCC
Q 005171 48 PQVAVVGSQSSGKSSVLEALVGR 70 (710)
Q Consensus 48 PqIvVVG~qssGKSSLLnaL~G~ 70 (710)
.-|+|.|..|+|||||++++.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999874
No 500
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=65.95 E-value=2.6 Score=44.12 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 005171 49 QVAVVGSQSSGKSSVLEALVGRD 71 (710)
Q Consensus 49 qIvVVG~qssGKSSLLnaL~G~~ 71 (710)
-|+++|..|+||||+..+|+++.
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHhcC
Confidence 49999999999999999999763
Done!