RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 005171
(710 letters)
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 312 bits (801), Expect = e-102
Identities = 179/305 (58%), Positives = 236/305 (77%), Gaps = 7/305 (2%)
Query: 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRR 83
+IP++NKLQD+F LGS ++LPQ+ VVGSQSSGKSSVLE +VGRDFLPRG+ I TRR
Sbjct: 2 QLIPVINKLQDVFNTLGSD-PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRR 60
Query: 84 PLVLQLLQTKT------DEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQ 137
PL+LQL +E+GEFLH P FYDFSEIR EI TD+ G NKG+S +
Sbjct: 61 PLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQP 120
Query: 138 IRLKIFSPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANS 197
I LKI+SPHV+++TLVDLPGITKVPVG+QP DIE +IR M+M+YIK+ + +I+AVTPAN+
Sbjct: 121 INLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180
Query: 198 DLANSDALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQ 257
DLANSDALQ+A DP+G RTIG+ITKLD+MD+GTDA +L G+VIPL LG++GV+NRSQ
Sbjct: 181 DLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQ 240
Query: 258 EDIMFNRSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSR 317
EDI+ +SI+++L +E +F++ P+Y +A+R G L+K LN++L+ HI+ LP LK +
Sbjct: 241 EDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVK 300
Query: 318 ISSAL 322
+S L
Sbjct: 301 VSKML 305
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 300 bits (769), Expect = 2e-97
Identities = 183/299 (61%), Positives = 229/299 (76%), Gaps = 2/299 (0%)
Query: 24 SVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRR 83
+IPLVN+LQD F+ +G + ++LPQ+AVVG QS+GKSSVLE VGRDFLPRG+ I TRR
Sbjct: 3 DLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRR 62
Query: 84 PLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIF 143
PLVLQL + EY EFLH GK+F DF E+R EI+A+TD+ G NKG+S I L+++
Sbjct: 63 PLVLQL--VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVY 120
Query: 144 SPHVLDITLVDLPGITKVPVGEQPADIEARIRTMIMSYIKQPSCLILAVTPANSDLANSD 203
SPHVL++TLVDLPG+TKVPVG+QP DIE +IR M+M ++ + +CLILAV+PANSDLANSD
Sbjct: 121 SPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 180
Query: 204 ALQIAGIADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFN 263
AL+IA DP G RTIG+ITKLD+MD GTDAR++L K++PLR GY+GVVNRSQ+DI
Sbjct: 181 ALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGK 240
Query: 264 RSIKDALVAEEKFFRSRPVYNGLADRCGVPQLAKKLNQILVQHIKAILPGLKSRISSAL 322
+ I AL AE KFF S P Y LADR G P L K LNQ L HI+ LPGL++++ S L
Sbjct: 241 KDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 34.2 bits (77), Expect = 0.023
Identities = 26/169 (15%), Positives = 51/169 (30%), Gaps = 14/169 (8%)
Query: 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPG 106
+P +A +GK+++L+ L+ RG K +
Sbjct: 2 IPLLAFAAWSGTGKTTLLKKLI-PALCARGIRPGLI----------KHTHHDMDVDKPGK 50
Query: 107 KRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQ 166
+ + + + D++ F +D + +DL + E
Sbjct: 51 DSYELRKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEI 110
Query: 167 PADIEARIRTMIMSYIKQPSCLILAV---TPANSDLANSDALQIAGIAD 212
+ R ++AV P N D+A D + G+AD
Sbjct: 111 AKIVLFRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDVEGLAD 159
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 33.9 bits (76), Expect = 0.030
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84
+ V +VG ++GKSS+L A+ T P
Sbjct: 1 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP 38
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 33.9 bits (76), Expect = 0.036
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84
VA+VG + GKS++L L+G P T R
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRK 42
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 33.7 bits (77), Expect = 0.040
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 426 FEVLIRRQIARLLDPSLQCARFIYDELMKISHHCLVNELQRFPVLRKRMDEVIGNFLREG 485
E L+ + R ++ + + I LV R P+++K++ E G R+
Sbjct: 120 LESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKD 179
Query: 486 LEPSE 490
+ P E
Sbjct: 180 VNPDE 184
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 33.4 bits (75), Expect = 0.048
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 47 LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84
L V +VG S GKS++L + T P
Sbjct: 1 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVP 38
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 33.2 bits (74), Expect = 0.066
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 46 ELPQVAVVGSQSSGKSSVLEALVGRDFL 73
LP++A+ G + GKSS + +L+ R L
Sbjct: 22 GLPEIALAGRSNVGKSSFINSLINRKNL 49
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 32.7 bits (73), Expect = 0.10
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 48 PQVAVVGSQSSGKSSVLEALVGRDFLP 74
P + + G Q+SGK+S+L L P
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTTDSVRP 30
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 32.4 bits (72), Expect = 0.11
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 46 ELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84
+VA G ++GKSS L L + L R + R
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ 53
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 32.9 bits (74), Expect = 0.11
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 30 NKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRD 71
KL ++ L + L + V+G GKSS + +++G
Sbjct: 16 TKLLELLGNLKQEDVNSL-TILVMGKGGVGKSSTVNSIIGER 56
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 32.0 bits (71), Expect = 0.12
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86
+V + G ++GKSS+L AL GR+ + T R ++
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 40
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 32.0 bits (71), Expect = 0.16
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLV 86
+A+VG + GKS++L L+G+ T R +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRI 44
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 31.3 bits (69), Expect = 0.22
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81
V +VG + GKS++ LV + ++
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGV 34
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 31.1 bits (69), Expect = 0.22
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 49 QVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRP 84
++ +VG + GKS++L L+ D + T R
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRD 37
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 31.6 bits (71), Expect = 0.31
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDF 72
VA+VG +GKS ++ L G+
Sbjct: 35 VAIVGLYRTGKSYLMNKLAGKKK 57
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 31.3 bits (70), Expect = 0.39
Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 13/100 (13%)
Query: 23 GSVIPLVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGR-----DFLPRGN 77
G++ + + D ++ S VAV G SGKSS + L G G
Sbjct: 36 GNIQLTNSAISDALKEIDSSV----LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV 91
Query: 78 DICTRRPLVLQLLQTKTDEEYGEFLHLPGKRFYDFSEIRR 117
T + F LPG +F
Sbjct: 92 VEVTMERHP----YKHPNIPNVVFWDLPGIGSTNFPPDTY 127
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 30.4 bits (67), Expect = 0.40
Identities = 8/59 (13%), Positives = 19/59 (32%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKR 108
V ++G GK+S++ V + + L ++ + G+
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 30.0 bits (66), Expect = 0.61
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDF 72
+ ++G ++GK+++L+ G D
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDV 27
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 30.0 bits (66), Expect = 0.64
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 49 QVAVVGSQSSGKSSVLEALVGRD 71
+VA+VG + GKS++ A++ ++
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKE 32
>d1k28a3 d.2.1.3 (A:130-345) Tail-associated lysozyme gp5, catalytic
domain {Bacteriophage T4 [TaxId: 10665]}
Length = 216
Score = 30.0 bits (67), Expect = 0.67
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 212 DPDGYRTIGI---ITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIMFNRSIKD 268
D +GY TIGI I K + D +L +V G G + + +F R + D
Sbjct: 64 DTEGYPTIGIGHLIMKQPVRD-MAQINKVLSKQVGREITGNPGSITMEEATTLFERDLAD 122
Query: 269 ALVAEEKFFRSRPVYNGLAD 288
+ + PV+ +
Sbjct: 123 MQRDIKSHSKVGPVWQAVNR 142
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 29.7 bits (65), Expect = 0.68
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDF 72
+ ++G +GK+++L L +
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEV 30
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 29.6 bits (65), Expect = 0.69
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRR 83
+ +VG ++GK+++L L + + I
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 36
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 29.7 bits (65), Expect = 0.75
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 50 VAVVGSQSSGKSSVLEALVGRD 71
+ G + GKS+++ L G+
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKK 24
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 29.7 bits (65), Expect = 0.75
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTR 82
+ +G ++GK+++L L
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT 35
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.5 bits (65), Expect = 0.81
Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 12/67 (17%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICT------------RRPLVLQLLQTKTDEE 97
V +VG GK+ +L FL + LQ+ T E
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQER 68
Query: 98 YGEFLHL 104
+ H
Sbjct: 69 FRSVTHA 75
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.4 bits (65), Expect = 0.89
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP-----RGNDICTR------RPLVLQLLQTKTDEEY 98
+ ++G+ GK+ ++ F P G D + + LQ+ T E +
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF 67
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 29.3 bits (64), Expect = 1.0
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDF 72
+ +VG Q SGK++ + + F
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQF 27
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 29.3 bits (64), Expect = 1.1
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
V ++G+ GKS++ G + P
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGP 28
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 29.3 bits (64), Expect = 1.1
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDF 72
V ++G GK+S++ V + F
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKF 27
>d1qqya_ d.2.1.2 (A:) Lysozyme {Dog (Canis familiaris), milk [TaxId:
9615]}
Length = 130
Score = 28.7 bits (64), Expect = 1.2
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 396 PCEDLTDDDIRTAIQNA 412
C DD+I I A
Sbjct: 80 MCSKFLDDNIDDDIACA 96
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 29.0 bits (63), Expect = 1.3
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDF 72
V ++G Q GKS++ G
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHD 28
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 29.1 bits (64), Expect = 1.3
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 11/60 (18%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICT-----------RRPLVLQLLQTKTDEEY 98
+ ++G+ S GK+S L F P + + LQ+ T E Y
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY 67
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 29.4 bits (64), Expect = 1.4
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 42 QSTIELPQ--VAVVGSQSSGKSSVLEAL 67
+ +E + ++G SGKSS+L+A+
Sbjct: 16 DTVVEFKEGINLIIGQNGSGKSSLLDAI 43
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 28.9 bits (63), Expect = 1.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDF 72
+A++G +S GKSS+ V F
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQF 29
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 29.2 bits (64), Expect = 1.5
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 36 FAQLGSQSTIELPQ--VAVVGSQSSGKSSVLEAL 67
F G S I A+VG SGKS++++A+
Sbjct: 11 FKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAI 44
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 28.5 bits (62), Expect = 1.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
+ VVG+ + GKSS+++ F
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTK 29
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 28.9 bits (63), Expect = 1.7
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
+ ++G + GKSS++ V DF
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAE 30
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 28.8 bits (63), Expect = 1.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDF 72
V VG SGK+ + L+ +
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQY 25
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.4 bits (62), Expect = 1.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
VAV G+ GKSS++ V F
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRE 29
>d1b9oa_ d.2.1.2 (A:) alpha-Lactalbumin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 123
Score = 27.9 bits (62), Expect = 2.0
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 396 PCEDLTDDDIRTAIQNA 412
C+ DDDI I A
Sbjct: 76 SCDKFLDDDITDDIMCA 92
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 28.6 bits (62), Expect = 2.0
Identities = 6/73 (8%), Positives = 19/73 (26%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF 109
+ + G SGK+++ L + + + E+ ++
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQW 84
Query: 110 YDFSEIRREIQAQ 122
+ +
Sbjct: 85 DVEWLTHQLFRQL 97
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 28.5 bits (62), Expect = 2.2
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
+ V+G + GK+ + F
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPD 29
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.1 bits (61), Expect = 2.3
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
+ VVG GKS++ + F+
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVS 33
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.1 bits (61), Expect = 2.3
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
+A+ G GKS+++ + + F+
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIW 29
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.3 bits (62), Expect = 2.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
V V+GS GKS++ V F+
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIE 30
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 28.2 bits (62), Expect = 2.3
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 11/60 (18%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPR-----GNDICTR------RPLVLQLLQTKTDEEY 98
+ ++G GK+ VL F G D R + + LQ+ T E +
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 68
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 28.3 bits (62), Expect = 2.4
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81
V ++G GKS++L +F
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 38
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 28.0 bits (61), Expect = 2.5
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 32 LQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRR 83
L I +L S E+ ++ ++G ++GK+++L+ L D
Sbjct: 2 LLSILRKLKSAPDQEV-RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI 52
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 28.3 bits (62), Expect = 2.6
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
+ +G GK++ L F P
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNP 32
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 28.0 bits (61), Expect = 2.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDF 72
+ VVG+ GKS++ L+ F
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHF 28
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.1 bits (61), Expect = 2.7
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
+ VVG GKS++ + F+
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVT 32
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 28.5 bits (62), Expect = 2.9
Identities = 7/35 (20%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 36 FAQLGSQSTIELPQ---VAVVGSQSSGKSSVLEAL 67
F + + + +++G SGKS++++A+
Sbjct: 11 FKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAI 45
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 27.6 bits (60), Expect = 3.1
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
+ +G QS GK+S++ + F
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDN 27
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 28.3 bits (63), Expect = 3.1
Identities = 32/179 (17%), Positives = 63/179 (35%), Gaps = 17/179 (9%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF 109
A+VG SGKS+V AL+ + P G + L + L + G+
Sbjct: 43 TALVGPNGSGKSTVA-ALLQNLYQPTGGQLL----LDGKPLPQYEHRYLHRQVAAVGQEP 97
Query: 110 YDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPAD 169
F +E A + + ++ ++ + LP V E +
Sbjct: 98 QVFGRSLQENIAYGLTQKPTMEEITAAAVKSG------AHSFISGLPQGYDTEVDEAGSQ 151
Query: 170 IEA--RIRTMIM-SYIKQPSCLILAVTPANSDLANSDALQ--IAGIADPDGYRTIGIIT 223
+ R + + I++P LIL + D + ++ + + R++ +IT
Sbjct: 152 LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS-RSVLLIT 209
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.7 bits (60), Expect = 3.1
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
+ +VG +GK++ ++ + +F
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEK 30
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 27.7 bits (60), Expect = 3.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
+ VVG GKS++ + F+P
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVP 31
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 27.9 bits (61), Expect = 3.2
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
+ ++G GKSS+L F P
Sbjct: 10 ILIIGESGVGKSSLLLRFTDDTFDP 34
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 27.6 bits (60), Expect = 3.2
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 47 LPQ--VAVVGSQSSGKSSVLEALVGRDF 72
+P+ + V+G SGKSS++ + +
Sbjct: 3 IPELRLGVLGDARSGKSSLIHRFLTGSY 30
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 27.6 bits (60), Expect = 3.3
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDF 72
V ++G GK+S++ F
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKF 28
>d1gd6a_ d.2.1.2 (A:) Lysozyme {Silkworm (Bombyx mori) [TaxId:
7091]}
Length = 119
Score = 27.1 bits (60), Expect = 3.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 396 PCEDLTDDDIRTAIQNA 412
C DL DDI A + A
Sbjct: 74 KCSDLLTDDITKAAKCA 90
>d2vb1a1 d.2.1.2 (A:1-129) Lysozyme {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 129
Score = 27.2 bits (60), Expect = 3.4
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 396 PCEDLTDDDIRTAIQNA 412
PC L DI ++ A
Sbjct: 79 PCSALLSSDITASVNCA 95
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 27.6 bits (60), Expect = 3.4
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDF 72
V+G+ +GKS +L + + F
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKF 30
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 27.6 bits (60), Expect = 3.4
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
V +VGS GKS++ + +F+
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVE 31
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 27.7 bits (60), Expect = 3.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
V ++G GKSS++ V F P
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDP 31
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.7 bits (60), Expect = 3.8
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDF 72
+ ++G + GKSS++ V F
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQF 31
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 27.7 bits (60), Expect = 3.8
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDF 72
+ +VG + GK+ +L F
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQF 27
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 27.7 bits (60), Expect = 3.9
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDF 72
+ VVG GK+++L F
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCF 27
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 27.6 bits (60), Expect = 4.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
V ++G GKSS++ V F
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDT 33
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.5 bits (60), Expect = 4.0
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
++G GKS +L + F P
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQP 30
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 27.3 bits (59), Expect = 4.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
+ V+GS GKS++ V F+
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVE 30
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.4 bits (60), Expect = 4.2
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
+ ++G GKS +L V F P
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNP 29
>d1otga_ d.80.1.2 (A:) 5-carboxymethyl-2-hydroxymuconate isomerase
(CHMI) {Escherichia coli [TaxId: 562]}
Length = 125
Score = 27.0 bits (60), Expect = 4.3
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 284 NGLADRCGVPQLAKKLNQILVQHIKAILPGLKSR-ISSALVSVAKEHASYG 333
+ + + +P L K+N L L G++SR +A Y
Sbjct: 9 DNIREEADLPGLFAKVNPTLAATGIFPLAGIRSRVHWVDTWQMADGQHDYA 59
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 27.3 bits (59), Expect = 4.5
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
VVG + GK+ +L + F
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKFPS 30
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 27.8 bits (60), Expect = 4.6
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 44 TIELPQ--VAVVGSQSSGKSSVLEALVGRDFLP 74
+E + ++G SGKSS+L+A++ + P
Sbjct: 18 VVEFKEGINLIIGQNGSGKSSLLDAILVGLYWP 50
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 27.3 bits (59), Expect = 4.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDF 72
VVG + GK+ +L + F
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAF 34
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 27.3 bits (59), Expect = 4.8
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDF 72
VVG + GK+ +L + F
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAF 30
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 27.3 bits (59), Expect = 4.9
Identities = 17/194 (8%), Positives = 54/194 (27%), Gaps = 23/194 (11%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF 109
+ + G GK+++++ +V R +T E
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKK-KIFSS 61
Query: 110 YDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGEQPAD 169
F+ + + + + + + + ++D G +
Sbjct: 62 KFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIG--------KMEL 113
Query: 170 IEARIRTMIMSYIKQPSCLILAVTPANSDLANSDALQIAGIADPDGYRTIGIITKLDIMD 229
+ R ++ + P+ ++A P I + +++
Sbjct: 114 FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVK--------------EIRRLPGAVLIE 159
Query: 230 RGTDARNLLLGKVI 243
+ R+++L ++
Sbjct: 160 LTPENRDVILEDIL 173
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 27.2 bits (60), Expect = 5.0
Identities = 13/66 (19%), Positives = 18/66 (27%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF 109
V + G GKS LV R +D Q + L + G
Sbjct: 17 VLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGI 76
Query: 110 YDFSEI 115
D +
Sbjct: 77 IDVMNL 82
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 27.6 bits (61), Expect = 5.2
Identities = 17/145 (11%), Positives = 44/145 (30%), Gaps = 7/145 (4%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPRG----NDICTRRPLVLQLLQTKTDEEYGEFLHLP 105
++G SGKS+++ + G G + +L + L
Sbjct: 33 TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK 92
Query: 106 GKRFYDFSEIRREIQAQTDKEAGGNKGVSDKQIRLKIFSPHVLDITLVDLPGITKVPVGE 165
+ I ++ + K K+ + + +L+ + L + GE
Sbjct: 93 EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE--FLKLSHLYDRKAGE 150
Query: 166 QPADIEARIRTMIMSYIKQPSCLIL 190
+ + + + P +++
Sbjct: 151 LSGGQMKLV-EIGRALMTNPKMIVM 174
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 27.1 bits (59), Expect = 5.3
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLP 74
+ ++G+ GKS +L +
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTN 33
>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator
TM1602, C-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 107
Score = 26.1 bits (58), Expect = 5.6
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 322 LVSVAKEHASYGEITESKAGQGALLLNILSKYS-EAFSSMVEGKNEEMSTSELSGGARIH 380
+V V EH YGEI +++ S+ F +++E E LSGG +H
Sbjct: 31 IVDVIVEHPVYGEIRGI--------IDVSSEEEVLKFVNLMEMAKTEP-LLTLSGGVHLH 81
Query: 381 YI 382
I
Sbjct: 82 TI 83
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 27.1 bits (59), Expect = 5.7
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICT 81
VVG + SGK++++E V + G + T
Sbjct: 4 WQVVGYKHSGKTTLMEKWV-AAAVREGWRVGT 34
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b,
N-terminal (G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 27.0 bits (58), Expect = 8.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 48 PQVAVVGSQSSGKSSVLEALVG 69
P V+V+G GK+++L+ + G
Sbjct: 6 PIVSVLGHVDHGKTTLLDHIRG 27
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 26.4 bits (58), Expect = 8.6
Identities = 12/66 (18%), Positives = 21/66 (31%)
Query: 50 VAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKTDEEYGEFLHLPGKRF 109
V + G GKS L+ R +D R + L + + L + G
Sbjct: 18 VLITGDSGIGKSETALELIKRGHRLVADDNVEIREISKDELIGRAPKLIEHLLEIRGLGI 77
Query: 110 YDFSEI 115
+ +
Sbjct: 78 INVMTL 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.377
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,510,030
Number of extensions: 119958
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 100
Length of query: 710
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 618
Effective length of database: 1,144,436
Effective search space: 707261448
Effective search space used: 707261448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.3 bits)