BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005172
(710 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 125/303 (41%), Gaps = 52/303 (17%)
Query: 398 LEFNSTRKRMSVIIRDE---EGKILLLCKGADSVMFDRLAK---NGRDFEVETRDHVNKY 451
+ FNST K I +E E + LL+ KGA + DR + NG + E D +
Sbjct: 485 IPFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAE-EPLKEDMKEAF 543
Query: 452 ADAGLRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTETIEKDLVLLGATA 511
+A L L RVL + + +K++E AD DL +G A
Sbjct: 544 QNAYLELGGLGERVLGFCHFALPEDKYNEGY-PFDADEPNFP-------TTDLCFVGLMA 595
Query: 512 VEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLETPEI 571
+ D + VPD + K AGIK+ ++TGD TA I ++ G + I
Sbjct: 596 MIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETI--------- 646
Query: 572 LALEKTGAKSEITKASKESVLHQINEGKNQLSASGGSSEAFALIIDGKSLTYALEDDIKN 631
E A+ I + Q+N + GS D K L+ + DDI +
Sbjct: 647 ---EDIAARLNIP-------IGQVNPRDAKACVVHGS--------DLKDLSTEVLDDILH 688
Query: 632 KFLELAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGI--G 689
E ++ R+SP+QK ++ + G GDG ND L++ADIG+ G
Sbjct: 689 YHTE-------IVFARTSPQQKLIIVEGCQR-QGAIVAVTGDGVNDSPALKKADIGVAMG 740
Query: 690 ISG 692
ISG
Sbjct: 741 ISG 743
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 224 EELGQVDTILSDKTGTLTCNSM 245
E LG TI SDKTGTLT N M
Sbjct: 370 ETLGSTSTICSDKTGTLTQNRM 391
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 110/483 (22%), Positives = 184/483 (38%), Gaps = 114/483 (23%)
Query: 224 EELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNGL 283
E LG TI SDKTGTLT N M A+ ++
Sbjct: 340 ETLGSTSTICSDKTGTLTQNRMT--------VAHMWSDNQIH------------------ 373
Query: 284 NTEEDLTESRPSVKGFNFKDERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVDENTGK 343
E D TE++ G +F + W+ R+ +C+ A+ + ++
Sbjct: 374 --EADTTENQ---SGVSFDK---TSATWL---------ALSRIAGLCNRAVFQANQENLP 416
Query: 344 VMYEAESPDEAAFVIAARELGFEFYQRTQTSISLHELDPMTGKKVERVYKLLNVLEFNST 403
++ A + D + + + EL + K++ Y + + FNST
Sbjct: 417 ILKRAVAGDASESAL----------------LKCIELCCGSVKEMRERYTKIVEIPFNST 460
Query: 404 RKRMSVIIRDE---EGKILLLCKGADSVMFDRLAK---NGRD--FEVETRDHVNKYADAG 455
K I ++ E + LL+ KGA + DR + +G++ + E +D + +A
Sbjct: 461 NKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKD---AFQNAY 517
Query: 456 LRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTETIEKDLVLLGATAVEDK 515
L L RVL + +E+F E + D +D +L +G ++ D
Sbjct: 518 LELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLD--------NLCFVGLISMIDP 569
Query: 516 LQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLETPEILALE 575
+ VPD + K AGIK+ ++TGD TA I ++ G + + E
Sbjct: 570 PRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETV------------E 617
Query: 576 KTGAKSEITKASKESVLHQINEGKNQLSASGGSSEAFALIIDGKSLTYALEDDIKNKFLE 635
A+ I + Q+N + GS D K +T DDI E
Sbjct: 618 DIAARLNIP-------VSQVNPRDAKACVVHGS--------DLKDMTSEQLDDILKYHTE 662
Query: 636 LAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGISGVEG 695
++ R+SP+QK ++ + G GDG ND ++ADIG+ + G+ G
Sbjct: 663 -------IVFARTSPQQKLIIVEGCQR-QGAIVAVTGDGVNDSPASKKADIGVAM-GIAG 713
Query: 696 MQV 698
V
Sbjct: 714 SDV 716
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 132/318 (41%), Gaps = 56/318 (17%)
Query: 389 ERVYKLLNVLEFNSTRKRMSVIIRDE---EGKILLLCKGADSVMFDRLAK---NGRD--F 440
ER K++ + FNST K I ++ E + LL+ KGA + DR + +G++
Sbjct: 441 ERYTKIVEI-PFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPL 499
Query: 441 EVETRDHVNKYADAGLRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTETI 500
+ E +D + +A L L RVL + +E+F E + D +D
Sbjct: 500 DEELKD---AFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLD------ 550
Query: 501 EKDLVLLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQ 560
+L +G ++ D + VPD + K AGIK+ ++TGD TA I ++ G +
Sbjct: 551 --NLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNE 608
Query: 561 QIIINLETPEILALEKTGAKSEITKASKESVLHQINEGKNQLSASGGSSEAFALIIDGKS 620
+ E A+ I + Q+N + GS D K
Sbjct: 609 TV------------EDIAARLNIP-------VSQVNPRDAKACVVHGS--------DLKD 641
Query: 621 LTYALEDDIKNKFLELAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGM 680
+T DDI E ++ R+SP+QK ++ + G GDG ND
Sbjct: 642 MTSEQLDDILKYHTE-------IVFARTSPQQKLIIVEGCQR-QGAIVAVTGDGVNDSPA 693
Query: 681 LQEADIGIGISGVEGMQV 698
++ADIG+ + G+ G V
Sbjct: 694 SKKADIGVAM-GIAGSDV 710
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 37/191 (19%)
Query: 504 LVLLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQQII 563
L G ++ D + VPD + K AGI++ ++TGD TA I + ++ G + +
Sbjct: 593 LSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETV- 651
Query: 564 INLETPEILALEKTGAKSEITKASKESVLHQINEGKNQLSASGGSSEAFALIIDGKSLTY 623
E A+ + + Q+N +A A +I+G L
Sbjct: 652 -----------EDIAARLRVP-------VDQVNR-----------KDARACVINGMQL-- 680
Query: 624 ALEDDIKNKFLELAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQE 683
+D ++ +E ++ R+SP+QK ++ + G GDG ND L++
Sbjct: 681 --KDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQR-LGAIVAVTGDGVNDSPALKK 737
Query: 684 ADIGI--GISG 692
ADIG+ GI+G
Sbjct: 738 ADIGVAMGIAG 748
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 224 EELGQVDTILSDKTGTLTCNSM 245
E LG I SDKTGTLT N M
Sbjct: 375 ETLGSTSVICSDKTGTLTQNRM 396
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 395 LNVLEFNSTRKRMSVIIRDEEGKILLLCKGADSVMFDRLAKNGRDFEVETRDHVNKYADA 454
++ L FN KR ++ D G + KGA + + LAK D + ++KYA+
Sbjct: 395 VHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILE-LAKASNDLSKKVLSIIDKYAER 453
Query: 455 GLRTLILAYRVLDEE 469
GLR+L +A +V+ E+
Sbjct: 454 GLRSLAVARQVVPEK 468
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 224 EELGQVDTILSDKTGTLTCNSM 245
EE+ +D + SDKTGTLT N +
Sbjct: 318 EEMAGMDVLCSDKTGTLTLNKL 339
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 128/347 (36%), Gaps = 74/347 (21%)
Query: 224 EELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNG- 282
E LG I SDKTGTLT N M K + ID ++G
Sbjct: 340 ETLGCTSVICSDKTGTLTTNQMSVCKMFI------------------------IDRIDGD 375
Query: 283 --LNTEEDLTESRPSVKGFNFKDERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVDEN 340
L E +T S + +G E + N V D + + + A+C+ + +D N
Sbjct: 376 LCLLNEFSVTGSTYAPEG-----EVLKNDKPVRSGQYDGLVELATICALCNDS--SLDFN 428
Query: 341 TGKVMYE--AESPDEAAFVIAARELGFEFYQRTQTSISLHELDPMTGKKVERVYKLLNVL 398
K +YE E+ + A + + F R + + E + ++ K L
Sbjct: 429 ETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKV---ERANACNSVIRQLMKKEFTL 485
Query: 399 EFNSTRKRMSVIIRDEEGKIL----LLCKGADSVMFDRL--AKNGRDFEVETRD------ 446
EF+ RK MSV + + + KGA + DR + G T
Sbjct: 486 EFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKIL 545
Query: 447 HVNKYADAG---LRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTETI--E 501
V K G LR L LA R ++ E ++D+ T+ + E
Sbjct: 546 SVIKEWGTGRDTLRCLALATR------------------DTPPKREEMVLDDSTKFMEYE 587
Query: 502 KDLVLLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINI 548
DL +G + D + V I AGI++ ++TGD TAI I
Sbjct: 588 TDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 634
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 645 CC--RSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGI 690
CC R P K+ + ++S + T GDG ND L++A+IGI +
Sbjct: 673 CCFARVEPTHKSKIVEYLQS-FDEITAMTGDGVNDAPALKKAEIGIAM 719
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 512 VEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETA 545
VED +++ P+ I +L Q+GI+I +LTGD TA
Sbjct: 551 VEDPIKSSTPETILELQQSGIEIVMLTGDSKRTA 584
>pdb|3S4W|A Chain A, Structure Of The Fanci-Fancd2 Complex
pdb|3S4Z|A Chain A, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|B Chain B, Structure Of A Y Dna-Fanci Complex
pdb|3S4Z|C Chain C, Structure Of A Y Dna-Fanci Complex
pdb|3S51|A Chain A, Structure Of Fanci
pdb|3S51|B Chain B, Structure Of Fanci
pdb|3S51|C Chain C, Structure Of Fanci
pdb|3S51|D Chain D, Structure Of Fanci
Length = 1308
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 36/124 (29%)
Query: 438 RDFEVETRDHVNKYADAGLRT-------LIL--AYRVLDEEEYKVFNEKFSEAKNSVSAD 488
+D E+E DH +A LRT L+L A +VL+E ++ + AK SA+
Sbjct: 1058 QDVEIEKTDH---FAVVNLRTAAPTVCLLVLSQAEKVLEEVDWLI-------AKIKGSAN 1107
Query: 489 RETLIDEVTE------------TIEKDLVLLGATAV---EDKLQNGVP--DCIDKLAQAG 531
+ETL D+VT IEK +V+ T V + +Q +P C+D L +
Sbjct: 1108 QETLSDKVTPEDASSQAVPPTLLIEKAIVMQLGTLVTFFHELVQTALPSGSCVDTLLKGL 1167
Query: 532 IKIW 535
KI+
Sbjct: 1168 SKIY 1171
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 218 RTSNLNEELGQVDTILSDKTGTLTCNS---MEFIKCSVAGTAYGRGV 261
+ SN+ E++ ++DTI+ DKTGTLT + +FI S++ AY V
Sbjct: 17 KNSNVYEKIKEIDTIIFDKTGTLTYGTPIVTQFIGDSLS-LAYAASV 62
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 668 TLAIGDGANDVGMLQEADIGI 688
T+A+GDGAND+ ML A +GI
Sbjct: 342 TVAVGDGANDIDMLAAAGLGI 362
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 668 TLAIGDGANDVGMLQEADIGIGI 690
T++ GDG ND+ ML+ A IG+ +
Sbjct: 206 TMSFGDGGNDISMLRHAAIGVAM 228
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 668 TLAIGDGANDVGMLQEADIGIGI 690
T++ GDG ND+ ML+ A IG+ +
Sbjct: 206 TMSFGDGGNDISMLRHAAIGVAM 228
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 645 CC--RSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGI 690
CC R P K+ + ++S + T GDG ND L++A+IGI +
Sbjct: 674 CCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVNDAPALKKAEIGIAM 720
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 501 EKDLVLLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINI 548
E DL +G + D + V I AGI++ ++TGD TAI I
Sbjct: 588 ETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 635
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 645 CC--RSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGI 690
CC R P K+ + ++S + T GDG ND L++A+IGI +
Sbjct: 675 CCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVNDAPALKKAEIGIAM 721
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 132/351 (37%), Gaps = 81/351 (23%)
Query: 224 EELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNG- 282
E LG I SDKTGTLT N M K + ID V+G
Sbjct: 341 ETLGCTSVICSDKTGTLTTNQMSVCKMFI------------------------IDKVDGD 376
Query: 283 ---LNTEEDLTESRPSVKGFNFK-DERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVD 338
LN E +T S + +G K D+ I +G + D + + + A+C+ + +D
Sbjct: 377 FCSLN-EFSITGSTYAPEGEVLKNDKPIRSGQF------DGLVELATICALCNDS--SLD 427
Query: 339 ENTGKVMYE--AESPDEAAFVIAARELGFEFYQRTQTSISLHELDPMTGKKVERVYKLLN 396
N K +YE E+ + A + + F R + + E + ++ K
Sbjct: 428 FNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV---ERANACNSVIRQLMKKEF 484
Query: 397 VLEFNSTRKRMSVII------RDEEGKILLLCKGADSVMFDRL--AKNGRDFEVETRD-- 446
LEF+ RK MSV R G + + KGA + DR + G T
Sbjct: 485 TLEFSRDRKSMSVYCSPAKSSRAAVGNKMFV-KGAPEGVIDRCNYVRVGTTRVPMTGPVK 543
Query: 447 ----HVNKYADAG---LRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTET 499
V K G LR L LA R ++ E ++D+ +
Sbjct: 544 EKILSVIKEWGTGRDTLRCLALATR------------------DTPPKREEMVLDDSSRF 585
Query: 500 I--EKDLVLLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINI 548
+ E DL +G + D + V I AGI++ ++TGD TAI I
Sbjct: 586 MEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 636
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 645 CC--RSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGI 690
CC R P K+ + ++S + T GDG ND L++A+IGI +
Sbjct: 674 CCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVNDAPALKKAEIGIAM 720
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 132/351 (37%), Gaps = 81/351 (23%)
Query: 224 EELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGRGVTEVERAMNRKKGSPLIDVVNG- 282
E LG I SDKTGTLT N M K + ID V+G
Sbjct: 340 ETLGCTSVICSDKTGTLTTNQMSVCKMFI------------------------IDKVDGD 375
Query: 283 ---LNTEEDLTESRPSVKGFNFK-DERIANGNWVNEPNSDVIQKFFRLLAVCHTAIPEVD 338
LN E +T S + +G K D+ I +G + D + + + A+C+ + +D
Sbjct: 376 FCSLN-EFSITGSTYAPEGEVLKNDKPIRSGQF------DGLVELATICALCNDS--SLD 426
Query: 339 ENTGKVMYE--AESPDEAAFVIAARELGFEFYQRTQTSISLHELDPMTGKKVERVYKLLN 396
N K +YE E+ + A + + F R + + E + ++ K
Sbjct: 427 FNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKV---ERANACNSVIRQLMKKEF 483
Query: 397 VLEFNSTRKRMSVII------RDEEGKILLLCKGADSVMFDRL--AKNGRDFEVETRD-- 446
LEF+ RK MSV R G + + KGA + DR + G T
Sbjct: 484 TLEFSRDRKSMSVYCSPAKSSRAAVGNKMFV-KGAPEGVIDRCNYVRVGTTRVPMTGPVK 542
Query: 447 ----HVNKYADAG---LRTLILAYRVLDEEEYKVFNEKFSEAKNSVSADRETLIDEVTET 499
V K G LR L LA R ++ E ++D+ +
Sbjct: 543 EKILSVIKEWGTGRDTLRCLALATR------------------DTPPKREEMVLDDSSRF 584
Query: 500 I--EKDLVLLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINI 548
+ E DL +G + D + V I AGI++ ++TGD TAI I
Sbjct: 585 MEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 635
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 508 GATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLE 567
G AV D L+ + +L + GIK+ ++TGD +A I +++ ++L
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS----------RELNLDLV 577
Query: 568 TPEILALEKTGAKSEITKASKESVLHQINEGKNQLSA 604
E+L +K+ E+ K + V+ + +G N A
Sbjct: 578 IAEVLPHQKS---EEVKKLQAKEVVAFVGDGINDAPA 611
>pdb|1XVI|A Chain A, Crystal Structure Of Yedp, Phosphatase-Like Domain Protein
From Escherichia Coli K12
pdb|1XVI|B Chain B, Crystal Structure Of Yedp, Phosphatase-Like Domain Protein
From Escherichia Coli K12
Length = 275
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 662 SGTGKTTLAIGDGANDVGMLQEADIGIGISGV--EGMQVFN 700
SG TTL +GDG ND +L+ D + + G+ EG+ + +
Sbjct: 205 SGKRPTTLGLGDGPNDAPLLEVMDYAVIVKGLNREGVHLHD 245
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 508 GATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRPGMQQIIINLE 567
G AV D L+ + +L + GIK+ ++TGD +A I +++ ++L
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS----------RELNLDLV 499
Query: 568 TPEILALEKTGAKSEITKASKESVLHQINEGKNQLSA 604
E+L +K+ E+ K + V+ + +G N A
Sbjct: 500 IAEVLPHQKS---EEVKKLQAKEVVAFVGDGINDAPA 533
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 633 FLELAIGCASVICCRSSPRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGISG 692
F+E A G A V P+ K V +++ G GDG ND L++AD GI + G
Sbjct: 600 FVEAADGFAEVF-----PQHKYNVVEILQQ-RGYLVAMTGDGVNDAPSLKKADTGIAVEG 653
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 218 RTSNLNEELGQVDTILSDKTGTLTCNS---MEFIKCSVAGTAYGRGV 261
+ SN+ E++ ++DTI+ +KTGTLT + +FI S++ AY V
Sbjct: 17 KNSNVYEKIKEIDTIIFNKTGTLTYGTPIVTQFIGDSLS-LAYAASV 62
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 218 RTSNLNEELGQVDTILSDKTGTLTCNS---MEFIKCSVAGTAYGRGV 261
+ SN+ E++ ++DTI+ +KTGTLT + +FI S++ AY V
Sbjct: 17 KNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFIGDSLS-LAYAASV 62
>pdb|3N28|A Chain A, Crystal Structure Of Probable Phosphoserine Phosphatase
From Vibrio Cholerae, Unliganded Form
Length = 335
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 668 TLAIGDGANDVGMLQEADIGIG 689
T+A+GDGAND+ M+ A +G+
Sbjct: 264 TVAVGDGANDLVMMAAAGLGVA 285
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 668 TLAIGDGANDVGMLQEADIGIG 689
T+A+GDGAND+ M ++A + I
Sbjct: 162 TVAVGDGANDISMFKKAGLKIA 183
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 668 TLAIGDGANDVGMLQEADIGIG 689
T+A+GDGAND+ M ++A + I
Sbjct: 162 TVAVGDGANDISMFKKAGLKIA 183
>pdb|1RKQ|A Chain A, Crystal Structure Of Had-Like Phosphatase Yida From E.
Coli
pdb|1RKQ|B Chain B, Crystal Structure Of Had-Like Phosphatase Yida From E.
Coli
Length = 282
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 645 CCRSSPRQKALVTRLVKSGTGKTTLA------------IGDGANDVGMLQEADIGIGI 690
+S+P ++ + V GTG +LA IGD ND+ M++ A +G+ +
Sbjct: 182 VLKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAV 239
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 650 PRQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGIGI 690
P +KA + V+ T +GDG ND L +AD+GI I
Sbjct: 192 PHEKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVGIAI 230
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 667 TTLAIGDGANDVGMLQEADIGIGI 690
T +GDG ND L +AD+GI I
Sbjct: 207 VTAMVGDGVNDAPALAQADVGIAI 230
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 354 AAFVIAARELGFEFYQRTQTSISLHELDPMTGKKVERVYKLLNVLEFNSTRKRMSVIIRD 413
A ++ RE+ + +TQ L+P + +K+ R +++ +L + K VI
Sbjct: 34 ARHILTGREVAIKIIDKTQ-------LNPTSLQKLFREVRIMKILNHPNIVKLFEVI-ET 85
Query: 414 EEGKILLLCKGADSVMFDRLAKNGRDFEVETRDHVNKYADA 454
E+ L++ + +FD L +GR E E R + A
Sbjct: 86 EKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSA 126
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 354 AAFVIAARELGFEFYQRTQTSISLHELDPMTGKKVERVYKLLNVLEFNSTRKRMSVIIRD 413
A ++ RE+ + +TQ L+P + +K+ R +++ +L + K VI
Sbjct: 31 ARHILTGREVAIKIIDKTQ-------LNPTSLQKLFREVRIMKILNHPNIVKLFEVI-ET 82
Query: 414 EEGKILLLCKGADSVMFDRLAKNGRDFEVETRDHVNKYADA 454
E+ L++ + +FD L +GR E E R + A
Sbjct: 83 EKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSA 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,109,217
Number of Sequences: 62578
Number of extensions: 760943
Number of successful extensions: 1981
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1909
Number of HSP's gapped (non-prelim): 85
length of query: 710
length of database: 14,973,337
effective HSP length: 106
effective length of query: 604
effective length of database: 8,340,069
effective search space: 5037401676
effective search space used: 5037401676
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)