BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005173
(710 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/124 (66%), Positives = 101/124 (81%)
Query: 475 VRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGR 534
VR+VPLF+ MD+R+L A+CERLKP L T + VRE DPVNEMLFI+RG L+S TT GGR
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 535 TGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVAS 594
+GF+N + GDFCG+ELLTWALDP+ LPSSTRTVKA+TEVEAFA + ++LKFVAS
Sbjct: 68 SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 595 QYRK 598
Q+R+
Sbjct: 128 QFRR 131
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 34/207 (16%)
Query: 411 WRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRHL 470
+ R D + ++ +LP L Q + + Q W G+D +L P +LR DI HL
Sbjct: 14 YHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHL 73
Query: 471 CLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTT 530
+L+ Q+PLF+ L ++ +K C PG +R+ D + + F+ G ++
Sbjct: 74 NKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD 132
Query: 531 GGGRTGFFNSCR--IGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDED 588
N+ +G GD G + LT + +K V+A + D
Sbjct: 133 --------NTVLAILGKGDLIGSDSLT-------------KEQVIKTNANVKALTYC--D 169
Query: 589 LKFVASQYRKLHCKQLRHVFRCHSPQW 615
L++++ K LR V R + P++
Sbjct: 170 LQYIS-------LKGLREVLRLY-PEY 188
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 410 EWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRH 469
+++ + E++M +LP +Q + Y ++R+ + DE+SIL L LR +I
Sbjct: 10 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 68
Query: 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYT 529
C LV +PLF D + A+ +LK + PG +RE +M FI G + T
Sbjct: 69 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 128
Query: 530 TGGGRTGFFNSCRIGPGDFCGE 551
G ++ G + GE
Sbjct: 129 KGN------KEMKLSDGSYFGE 144
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 410 EWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRH 469
+++ + E++M +LP +Q + Y ++R+ + DE+SIL L LR +I
Sbjct: 13 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 71
Query: 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYT 529
C LV +PLF D + A+ +LK + PG +RE +M FI G + T
Sbjct: 72 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 131
Query: 530 TGGGRTGFFNSCRIGPGDFCGE 551
G ++ G + GE
Sbjct: 132 KGN------KEMKLSDGSYFGE 147
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 410 EWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRH 469
+++ + E++M +LP +Q + Y ++R+ + DE+SIL L LR +I
Sbjct: 10 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 68
Query: 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYT 529
C LV +PLF D + A+ +LK + PG +RE +M FI G + T
Sbjct: 69 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 128
Query: 530 TGGGRTGFFNSCRIGPGDFCGE 551
G ++ G + GE
Sbjct: 129 KGN------KEMKLSDGSYFGE 144
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 410 EWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRH 469
+++ + E++M +LP +Q + Y ++R+ + DEESIL L LR +I
Sbjct: 7 QYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINF 65
Query: 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYT 529
C LV +PLF D + ++ +L+ + PG +RE +M FI G + T
Sbjct: 66 NCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 125
Query: 530 TGGGRTGFFNSCRIGPGDFCGE 551
G T ++ G + GE
Sbjct: 126 KGNKET------KLADGSYFGE 141
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 410 EWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRH 469
+++ + E++M +LP +Q + Y ++R+ + DE+SIL L LR +I
Sbjct: 8 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 66
Query: 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYT 529
C LV +PLF D + A+ +LK + PG +RE +M FI G + T
Sbjct: 67 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 126
Query: 530 TGGGRTGFFNSCRIGPGDFCGE 551
G ++ G + GE
Sbjct: 127 KGN------KEMKLSDGSYFGE 142
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
Query: 410 EWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRH 469
+++ + E++M +LP +Q + Y ++R+ + DE+SIL L LR I
Sbjct: 10 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNF 68
Query: 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYT 529
C LV +PLF D + A+ +LK + PG +RE +M FI G + T
Sbjct: 69 NCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 128
Query: 530 TGGGRTGFFNSCRIGPGDFCGE 551
G ++ G + GE
Sbjct: 129 KGN------KEMKLSDGSYFGE 144
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 410 EWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRH 469
+++ + E++M +LP +Q + Y ++R+ + DEESIL L LR +I
Sbjct: 7 QYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINF 65
Query: 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYT 529
C LV +PLF D + ++ +L+ + PG +RE +M FI G + T
Sbjct: 66 NCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 125
Query: 530 TGGGRTGFFNSCRIGPGDFCGE 551
G T ++ G + GE
Sbjct: 126 KGNKET------KLADGSYFGE 141
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 410 EWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRH 469
++R + E++M +R+LP L+ + Y +YR+ + DE I + +R+D+ +
Sbjct: 9 QYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVANY 67
Query: 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYT 529
C DLV VP F D + V L+ + P ++E + M FI +G +D
Sbjct: 68 NCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM 127
Query: 530 TGG 532
+ G
Sbjct: 128 SDG 130
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 410 EWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRH 469
+++ + E++M +LP ++Q + Y ++R+ + DEE+IL L LR +I
Sbjct: 13 QYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQG-KIFDEENILSELNDPLREEIVNF 71
Query: 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYT 529
C LV +PLF D + A+ +L+ + PG +RE +M FI G
Sbjct: 72 NCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHG------ 125
Query: 530 TGGGRTGFFNSCRIGPGDFCGE 551
G T ++ G + GE
Sbjct: 126 VAGVITKSSKEMKLTDGSYFGE 147
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 410 EWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRH 469
+++ + E++M +LP +Q + Y ++R+ + DEESIL L LR +I
Sbjct: 13 QYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQG-KMFDEESILGELSEPLREEIINF 71
Query: 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYT 529
LV +PLF D + ++ +L+ + PG +RE +M FI G + T
Sbjct: 72 NXRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 131
Query: 530 TGGGRTGFFNSCRIGPGDFCGE 551
G T ++ G + GE
Sbjct: 132 KGNKET------KLADGSYFGE 147
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 7/142 (4%)
Query: 410 EWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRH 469
+++ + E++ +LP +Q + Y ++R+ + DE+SIL L LR +I
Sbjct: 10 QYQEKYKQVEQYXSFHKLPADFRQKIHDYYEHRYQG-KXFDEDSILGELNGPLREEIVNF 68
Query: 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYT 529
C LV PLF D + A +LK + PG +RE + FI G + T
Sbjct: 69 NCRKLVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGVVSVLT 128
Query: 530 TGGGRTGFFNSCRIGPGDFCGE 551
G ++ G + GE
Sbjct: 129 KGN------KEXKLSDGSYFGE 144
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Query: 410 EWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRH 469
+++ + E++M +LP +Q + Y ++R+ + DE+SIL L LR +I
Sbjct: 12 QYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNF 70
Query: 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYT 529
LV +PLF D + A+ +LK + PG +RE +M FI G + T
Sbjct: 71 NNRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT 130
Query: 530 TGGGRTGFFNSCRIGPGDFCGE-ELLT 555
G ++ G + GE LLT
Sbjct: 131 KGN------KEMKLSDGSYFGEISLLT 151
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 22/148 (14%)
Query: 473 DLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGG 532
LV VPLF + +LV + L+ R G R +P + M F+V G + T
Sbjct: 228 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP-- 285
Query: 533 GRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFV 592
N +GPG F GE L +PR + TV A T V + D + +
Sbjct: 286 ------NPVELGPGAFFGEMALISG-EPR--------SATVSAATTVSLLSLHSADFQML 330
Query: 593 ASQYRKLHCKQLRHVFRCHSPQWRTWAA 620
S ++ +FR + + R AA
Sbjct: 331 CS-----SSPEIAEIFRKTALERRGAAA 353
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 22/147 (14%)
Query: 474 LVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGG 533
LV VPLF + +LV + L+ R G R +P + M F+V G + T
Sbjct: 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 68
Query: 534 RTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVA 593
N +GPG F GE L + +PR + TV A T V + D + +
Sbjct: 69 -----NPVELGPGAFFGEMALI-SGEPRSA--------TVSAATTVSLLSLHSADFQMLC 114
Query: 594 SQYRKLHCKQLRHVFRCHSPQWRTWAA 620
S ++ +FR + + R AA
Sbjct: 115 SS-----SPEIAEIFRKTALEARGAAA 136
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 22/147 (14%)
Query: 474 LVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGG 533
LV VPLF + +LV + L+ R G R +P + M F+V G + T
Sbjct: 16 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 72
Query: 534 RTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVA 593
N +GPG F GE L + +PR + TV A T V + D + +
Sbjct: 73 -----NPVELGPGAFFGEMALI-SGEPRSA--------TVSAATTVSLLSLHSADFQMLC 118
Query: 594 SQYRKLHCKQLRHVFRCHSPQWRTWAA 620
S ++ +FR + + R AA
Sbjct: 119 SS-----SPEIAEIFRKTALERRGAAA 140
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 22/147 (14%)
Query: 474 LVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGG 533
LV VPLF + +LV + L+ R G R +P + M F+V G + T
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 70
Query: 534 RTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVA 593
N +GPG F GE L + +PR + TV A T V + D + +
Sbjct: 71 -----NPVELGPGAFFGEMALI-SGEPRSA--------TVSAATTVSLLSLHSADFQMLC 116
Query: 594 SQYRKLHCKQLRHVFRCHSPQWRTWAA 620
S ++ +FR + + R AA
Sbjct: 117 SS-----SPEIAEIFRKTALERRGAAA 138
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 22/147 (14%)
Query: 474 LVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGG 533
LV VPLF + +LV + L+ R G R +P + M F+V G + T
Sbjct: 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 68
Query: 534 RTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVA 593
N +GPG F GE L + +PR + TV A T V + D + +
Sbjct: 69 -----NPVELGPGAFFGEMALI-SGEPRSA--------TVSAATTVSLLSLHSADFQMLC 114
Query: 594 SQYRKLHCKQLRHVFRCHSPQWRTWAA 620
S ++ +FR + + R AA
Sbjct: 115 SS-----SPEIAEIFRKTALERRGAAA 136
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 22/147 (14%)
Query: 474 LVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGG 533
LV VPLF + +LV + L+ R G R +P + M F+V G + T
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 70
Query: 534 RTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVA 593
N +GPG F GE L + P + TV A T V + D + +
Sbjct: 71 -----NPVELGPGAFFGEMAL---ISGEP------ESATVSAATTVSLLSLHSADFQMLC 116
Query: 594 SQYRKLHCKQLRHVFRCHSPQWRTWAA 620
S ++ +FR + + R AA
Sbjct: 117 SS-----SPEIAEIFRKTALERRGAAA 138
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%)
Query: 452 ESILDGLPTDLRRDIKRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREE 511
E +L P D+R DI HL + ++ P F L D L A+ + C PG
Sbjct: 6 EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAG 65
Query: 512 DPVNEMLFIVRGHLD 526
+ V+ + F+V G L+
Sbjct: 66 ESVDSLCFVVSGSLE 80
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 22/147 (14%)
Query: 474 LVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGG 533
LV VPLF + +LV + L+ R G R +P + M F+V G + T
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 70
Query: 534 RTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVA 593
N +GPG F GE L + P + TV A T V + D + +
Sbjct: 71 -----NPVELGPGAFFGEMAL---ISGEP------WSATVSAATTVSLLSLHSADFQMLC 116
Query: 594 SQYRKLHCKQLRHVFRCHSPQWRTWAA 620
S ++ +FR + + R AA
Sbjct: 117 SS-----SPEIAEIFRKTALERRGAAA 138
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%)
Query: 467 KRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLD 526
KR + + + +V + + +D + V + L+P G V + +P +E I+ G
Sbjct: 149 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 208
Query: 527 SYTTGGGRTGFFNSCRIGPGDFCGE 551
F R+GP D+ GE
Sbjct: 209 VLQRRSENEEFVEVGRLGPSDYFGE 233
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%)
Query: 467 KRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLD 526
KR + + + +V + + +D + V + L+P G V + +P +E I+ G
Sbjct: 147 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 206
Query: 527 SYTTGGGRTGFFNSCRIGPGDFCGE 551
F R+GP D+ GE
Sbjct: 207 VLQRRSENEEFVEVGRLGPSDYFGE 231
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%)
Query: 467 KRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLD 526
KR + + + +V + + +D + V + L+P G V + +P +E I+ G
Sbjct: 151 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 210
Query: 527 SYTTGGGRTGFFNSCRIGPGDFCGE 551
F R+GP D+ GE
Sbjct: 211 VLQRRSENEEFVEVGRLGPSDYFGE 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,126,985
Number of Sequences: 62578
Number of extensions: 798921
Number of successful extensions: 1843
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1819
Number of HSP's gapped (non-prelim): 25
length of query: 710
length of database: 14,973,337
effective HSP length: 106
effective length of query: 604
effective length of database: 8,340,069
effective search space: 5037401676
effective search space used: 5037401676
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)