Query 005173
Match_columns 710
No_of_seqs 543 out of 3015
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 19:15:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 9E-120 2E-124 1022.7 51.4 574 72-709 64-641 (727)
2 PLN03192 Voltage-dependent pot 100.0 1.4E-67 2.9E-72 631.6 54.4 458 66-609 42-499 (823)
3 KOG0501 K+-channel KCNQ [Inorg 100.0 2.5E-65 5.4E-70 542.3 30.1 513 72-677 204-720 (971)
4 KOG0500 Cyclic nucleotide-gate 100.0 1E-60 2.2E-65 504.5 38.0 426 94-605 5-432 (536)
5 KOG0499 Cyclic nucleotide-gate 100.0 1.6E-53 3.4E-58 454.6 32.5 424 74-598 216-643 (815)
6 PRK09392 ftrB transcriptional 99.6 6.9E-14 1.5E-18 143.9 18.0 127 472-609 6-132 (236)
7 PRK11753 DNA-binding transcrip 99.5 3.1E-12 6.7E-17 129.0 19.9 115 482-606 6-121 (211)
8 KOG3713 Voltage-gated K+ chann 99.4 3.5E-12 7.5E-17 138.1 18.6 193 125-408 239-437 (477)
9 cd00038 CAP_ED effector domain 99.4 4.9E-12 1.1E-16 112.9 13.5 112 480-602 1-113 (115)
10 PF00520 Ion_trans: Ion transp 99.4 2.9E-12 6.3E-17 126.7 11.0 193 130-397 1-200 (200)
11 PRK11161 fumarate/nitrate redu 99.4 2.8E-11 6.1E-16 124.3 18.2 122 475-608 15-138 (235)
12 smart00100 cNMP Cyclic nucleot 99.3 3E-11 6.4E-16 108.4 15.2 116 480-604 1-117 (120)
13 PRK10402 DNA-binding transcrip 99.3 2E-11 4.2E-16 125.0 15.0 108 490-608 25-133 (226)
14 COG0664 Crp cAMP-binding prote 99.3 1.1E-10 2.3E-15 117.0 18.7 123 476-609 3-126 (214)
15 PF00027 cNMP_binding: Cyclic 99.3 2E-11 4.3E-16 105.2 10.5 90 499-598 2-91 (91)
16 PRK09391 fixK transcriptional 99.2 2.7E-10 5.9E-15 116.9 16.0 106 490-609 32-138 (230)
17 KOG0614 cGMP-dependent protein 99.2 3E-11 6.4E-16 130.3 7.9 129 469-606 268-397 (732)
18 TIGR03697 NtcA_cyano global ni 99.2 6.8E-10 1.5E-14 110.2 15.7 127 504-643 1-128 (193)
19 PRK13918 CRP/FNR family transc 99.1 1.6E-09 3.6E-14 108.5 16.4 127 495-643 5-134 (202)
20 PLN02868 acyl-CoA thioesterase 99.1 4.4E-10 9.6E-15 125.3 13.4 113 472-597 7-119 (413)
21 KOG0614 cGMP-dependent protein 99.1 1.7E-10 3.6E-15 124.6 8.5 121 465-600 146-266 (732)
22 KOG1419 Voltage-gated K+ chann 99.1 1.7E-09 3.6E-14 117.7 14.5 88 346-440 267-354 (654)
23 COG2905 Predicted signal-trans 99.1 2.3E-09 5.1E-14 117.6 15.5 116 472-601 6-121 (610)
24 KOG1113 cAMP-dependent protein 99.0 6.2E-10 1.3E-14 115.8 9.3 122 472-608 121-242 (368)
25 KOG1545 Voltage-gated shaker-l 99.0 9.2E-11 2E-15 121.1 -0.2 53 350-402 395-447 (507)
26 PF07885 Ion_trans_2: Ion chan 98.9 2.2E-08 4.7E-13 84.9 10.5 56 347-402 23-78 (79)
27 KOG1113 cAMP-dependent protein 98.7 3E-08 6.4E-13 103.4 8.3 119 466-598 233-351 (368)
28 KOG1420 Ca2+-activated K+ chan 98.5 7.1E-08 1.5E-12 104.8 5.2 136 347-490 287-427 (1103)
29 KOG4390 Voltage-gated A-type K 98.5 1.7E-08 3.7E-13 105.2 -2.1 180 125-401 226-413 (632)
30 KOG2968 Predicted esterase of 97.9 1.3E-05 2.8E-10 92.1 6.5 113 488-611 500-613 (1158)
31 PRK10537 voltage-gated potassi 97.9 0.00019 4.1E-09 79.2 14.5 54 348-401 168-221 (393)
32 KOG3684 Ca2+-activated K+ chan 97.8 0.004 8.6E-08 67.8 22.7 91 346-444 285-375 (489)
33 PF08412 Ion_trans_N: Ion tran 97.7 3.1E-05 6.7E-10 64.7 4.0 39 72-110 33-71 (77)
34 PF01007 IRK: Inward rectifier 97.7 0.00028 6.1E-09 76.1 11.0 59 347-405 83-143 (336)
35 KOG2968 Predicted esterase of 97.3 0.0011 2.4E-08 76.8 9.8 112 491-606 110-222 (1158)
36 KOG1418 Tandem pore domain K+ 97.1 0.00083 1.8E-08 74.7 6.9 61 348-408 115-175 (433)
37 PRK11832 putative DNA-binding 96.9 0.023 5.1E-07 56.7 14.4 96 488-597 14-110 (207)
38 PF04831 Popeye: Popeye protei 96.8 0.048 1E-06 51.4 14.8 107 483-599 14-122 (153)
39 KOG4404 Tandem pore domain K+ 95.9 0.049 1.1E-06 57.1 10.1 58 348-405 186-251 (350)
40 KOG3542 cAMP-regulated guanine 95.5 0.031 6.8E-07 63.0 7.2 114 469-597 277-392 (1283)
41 KOG3827 Inward rectifier K+ ch 95.3 0.11 2.4E-06 55.9 10.1 60 347-406 111-172 (400)
42 KOG2302 T-type voltage-gated C 95.1 0.83 1.8E-05 54.3 16.9 91 70-185 1099-1200(1956)
43 PLN03223 Polycystin cation cha 94.5 6.3 0.00014 49.2 23.0 31 374-404 1395-1425(1634)
44 KOG4404 Tandem pore domain K+ 93.1 0.014 3E-07 61.0 -2.0 48 346-393 78-125 (350)
45 KOG3193 K+ channel subunit [In 92.7 0.15 3.3E-06 56.5 5.0 41 349-389 218-258 (1087)
46 KOG1418 Tandem pore domain K+ 90.0 0.07 1.5E-06 59.2 -1.0 48 347-394 241-296 (433)
47 KOG3542 cAMP-regulated guanine 88.6 0.6 1.3E-05 53.2 5.0 105 459-586 23-127 (1283)
48 KOG3676 Ca2+-permeable cation 87.0 38 0.00083 40.3 18.3 74 361-435 601-681 (782)
49 KOG2301 Voltage-gated Ca2+ cha 82.1 23 0.00049 46.1 14.9 114 125-274 871-985 (1592)
50 KOG2302 T-type voltage-gated C 73.3 2.4E+02 0.0052 34.9 20.4 58 88-153 81-141 (1956)
51 KOG0498 K+-channel ERG and rel 71.3 50 0.0011 39.5 12.9 42 456-497 371-417 (727)
52 COG4709 Predicted membrane pro 70.9 17 0.00037 35.7 7.4 70 415-486 7-80 (195)
53 PF07883 Cupin_2: Cupin domain 68.2 8.1 0.00018 31.0 4.1 45 499-550 3-48 (71)
54 KOG3614 Ca2+/Mg2+-permeable ca 66.9 3.6E+02 0.0079 34.5 20.5 65 169-239 853-919 (1381)
55 PF08006 DUF1700: Protein of u 66.6 25 0.00055 34.4 8.0 55 414-470 6-64 (181)
56 PRK13290 ectC L-ectoine syntha 65.2 36 0.00078 31.4 8.2 70 497-585 38-107 (125)
57 PLN03192 Voltage-dependent pot 63.1 3.6E+02 0.0079 33.1 21.5 42 425-471 357-398 (823)
58 TIGR03037 anthran_nbaC 3-hydro 63.1 18 0.0004 34.8 6.0 59 513-588 47-105 (159)
59 PF13314 DUF4083: Domain of un 60.3 41 0.00088 26.5 6.2 51 373-423 3-56 (58)
60 PF14377 DUF4414: Domain of un 59.5 12 0.00027 33.5 3.9 45 425-469 51-105 (108)
61 PRK13264 3-hydroxyanthranilate 54.8 32 0.0007 33.7 6.1 61 512-589 52-112 (177)
62 KOG2301 Voltage-gated Ca2+ cha 54.5 6.6E+02 0.014 33.4 19.4 102 125-261 472-574 (1592)
63 PF00060 Lig_chan: Ligand-gate 48.3 17 0.00038 33.7 3.2 58 346-404 42-99 (148)
64 PF05899 Cupin_3: Protein of u 43.7 32 0.0007 28.4 3.7 42 501-550 14-55 (74)
65 PF10011 DUF2254: Predicted me 42.7 1E+02 0.0023 34.0 8.7 61 345-405 97-157 (371)
66 smart00835 Cupin_1 Cupin. This 38.0 1E+02 0.0022 28.9 6.8 55 495-551 31-87 (146)
67 COG1917 Uncharacterized conser 36.7 91 0.002 28.5 6.1 50 496-552 45-95 (131)
68 PF07697 7TMR-HDED: 7TM-HD ext 36.5 2.7E+02 0.0058 27.7 10.0 58 457-515 147-207 (222)
69 PHA03029 hypothetical protein; 34.6 1.6E+02 0.0035 24.4 6.2 37 372-408 2-38 (92)
70 PF01484 Col_cuticle_N: Nemato 34.2 1.8E+02 0.0039 21.9 6.4 42 377-418 8-49 (53)
71 PF14377 DUF4414: Domain of un 34.1 59 0.0013 29.1 4.2 48 426-473 8-68 (108)
72 KOG1054 Glutamate-gated AMPA-t 31.2 54 0.0012 37.7 4.0 70 351-426 598-667 (897)
73 TIGR00870 trp transient-recept 30.9 1E+03 0.022 28.7 27.2 46 372-417 586-632 (743)
74 PF12973 Cupin_7: ChrR Cupin-l 30.6 1.4E+02 0.003 25.5 5.8 64 495-583 25-88 (91)
75 KOG3609 Receptor-activated Ca2 30.3 5.6E+02 0.012 31.2 12.2 75 348-424 553-633 (822)
76 PF13623 SurA_N_2: SurA N-term 29.5 1.5E+02 0.0033 28.1 6.3 45 380-424 10-67 (145)
77 KOG4440 NMDA selective glutama 28.8 1.5E+02 0.0033 34.5 7.0 54 349-402 614-667 (993)
78 COG0662 {ManC} Mannose-6-phosp 27.9 1.4E+02 0.003 27.4 5.7 49 494-549 36-85 (127)
79 COG5559 Uncharacterized conser 27.5 47 0.001 26.2 1.9 18 453-470 6-23 (65)
80 PRK09108 type III secretion sy 24.8 2.1E+02 0.0046 31.4 7.2 71 369-439 173-243 (353)
81 PF02037 SAP: SAP domain; Int 24.5 1.3E+02 0.0028 21.0 3.6 26 414-439 5-35 (35)
82 TIGR03404 bicupin_oxalic bicup 24.1 2.2E+02 0.0048 31.4 7.3 50 498-550 71-121 (367)
83 COG4016 Uncharacterized protei 23.8 37 0.0008 31.5 0.9 12 696-707 61-72 (165)
84 KOG1053 Glutamate-gated NMDA-t 23.0 1E+03 0.023 29.4 12.5 116 255-428 568-720 (1258)
85 PRK04190 glucose-6-phosphate i 22.0 3.6E+02 0.0079 26.8 7.7 51 498-550 72-131 (191)
86 TIGR03404 bicupin_oxalic bicup 21.2 2.6E+02 0.0057 30.8 7.1 51 496-549 247-299 (367)
87 PRK08156 type III secretion sy 21.1 2.9E+02 0.0062 30.5 7.3 66 373-438 170-235 (361)
88 PRK14662 acpS 4'-phosphopantet 20.1 83 0.0018 28.8 2.5 12 667-678 45-56 (120)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.5e-120 Score=1022.66 Aligned_cols=574 Identities=46% Similarity=0.780 Sum_probs=512.7
Q ss_pred cccceeeCCCChhHHHHHHHHHHHHHHHHHHhhhhccccccc-cccccccCCCchhhHHHHHHHHHHHHHHHHHHhhcee
Q 005173 72 LVEKVILDPRGPIINRWNKIFLVACLVSLFVDPLFFYLPEAK-KNACINVSVPLEIILTVIRSLADAFYFVRIFIRFRTA 150 (710)
Q Consensus 72 ~~~~~ii~P~s~~~~~W~~~~li~~~~~~~~~Pl~~~~~~~~-~~~c~~~~~~~~~~~~~i~~~~D~~f~~Di~l~F~ta 150 (710)
...++||||+|++++.||++++++|+++++++||+||||..+ ...| +|..+...++++++++|+||++||+++||||
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta 141 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA 141 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence 344569999999999999999999999999999999999987 5567 8999999999999999999999999999999
Q ss_pred EEcCCCcccCCCeEeeChHHHHHHHhhhhhHhHhhhcCCHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHHHHHhHh
Q 005173 151 FVAPSSRVLGRGDLVIDPSKISSRYLRKDFWLDIMAAQPIPQLLLWAVIPYLKGSSMVSTKNVIRLIIIFQYLLRLYLTF 230 (710)
Q Consensus 151 y~~~~s~~~~~G~lV~d~~~Ia~rYl~~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lrl~~l~qyl~Rl~ri~ 230 (710)
|++++|+ ++|.||++||+||+++||++|++|++|+|++++|.++ ...........|..+.++||+|||.|++
T Consensus 142 yv~~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~---~~~~~~~~~~~l~~il~~~rL~Rl~Rv~ 213 (727)
T KOG0498|consen 142 YVDPSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI---GSTSLALESTILVGILLLQRLPRLRRVI 213 (727)
T ss_pred EECCCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee---cccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999974 7999999999999999999999999999999999776 1222233344778888899999999999
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCCCccc-ccccCCCCCCCccc
Q 005173 231 PLSYQIIKASGVLLETSWAGAAYNLMLYMLASHVLGACWYLLSVERQEECWRKVCRSHHLECNIG-FFDCHLVKDSSRVN 309 (710)
Q Consensus 231 ~l~~~i~~~~~~~~~t~~~~~~~~lll~~l~~H~~ac~wyll~~~~~~~cw~~~c~~~~~~c~~~-~l~~~~~~~~~~~s 309 (710)
+++.++++.+|++.+|+|+++++++++|||++||+||+||++|++|+++||+++|- .|... +++
T Consensus 214 ~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw----~~~l~~~~~----------- 278 (727)
T KOG0498|consen 214 PLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATW----LGSLGRLLS----------- 278 (727)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc----ccccccccc-----------
Confidence 99999999999999999999999999999999999999999999999999976421 11111 222
Q ss_pred ccccccccccCCCCCCCCcccchhhhhhhcccCCchHHHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHH
Q 005173 310 LFQMSNISSLCDPKSNYYQFGIFADAVILGVTASRFLDKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTL 389 (710)
Q Consensus 310 W~~~~~l~~~c~~~~~~~~~gi~~~al~~~i~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~l 389 (710)
|.. ..|+||+|.++ .+|+||+|||++||||+|||+++|+|..|++|+|++|++|+++
T Consensus 279 ----------~~~--~~~~fg~~s~~-----------~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL 335 (727)
T KOG0498|consen 279 ----------CYN--LSFTFGIYSLA-----------LKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLL 335 (727)
T ss_pred ----------cCc--ccccccchhHH-----------HHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHH
Confidence 322 22788987654 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCChHHHHhcCCchhHHHHHHH
Q 005173 390 FGLLIGNMQTYLQSTTVRLEEWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRH 469 (710)
Q Consensus 390 fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~g~de~~ll~~Lp~~Lr~~I~~~ 469 (710)
||++|||||+++|+.+.|.++|+.|++|+++||++|+||++||+||++|+||+|..|+|+||+++|++||++||+||++|
T Consensus 336 ~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~h 415 (727)
T KOG0498|consen 336 FAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRH 415 (727)
T ss_pred HHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCee
Q 005173 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFC 549 (710)
Q Consensus 470 l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 549 (710)
+|.++++++|+|++||++++++||.++++..|+|||+|++|||++++||||.+|.+++.+.++|.+ .+...+++||+|
T Consensus 416 L~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~--~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 416 LCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF--FVVAILGPGDFF 493 (727)
T ss_pred HhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce--EEEEEecCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999888844 569999999999
Q ss_pred cchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHH
Q 005173 550 GEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFRCHSPQWRTWAACFIQAAWFR 629 (710)
Q Consensus 550 Ge~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r~~s~~~~~~~~~~~q~~~~r 629 (710)
||+.++|+++ . | +++||+|+|.|++++|+++||++++++||++++++++|++++|+++|++|+++++|.+|++
T Consensus 494 GeEl~~~~~~-~-----p-~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~ 566 (727)
T KOG0498|consen 494 GEELLTWCLD-L-----P-QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRR 566 (727)
T ss_pred chHHHHHHhc-C-----C-CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHH
Confidence 9888888884 1 2 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhcccCCCCCCCCCchhHHHHHHHHHHhhhcccccCCC--ccCCCcCCCCCCCCCCCC
Q 005173 630 YKRRKEAAELKKREDMISMSDQATDQKESSSPSMGSGQFTSYAAKLAASTRRGGSKRCGT--EFDILSSLQKPNEPDFTV 707 (710)
Q Consensus 630 ~~~R~~~~~~~~~eery~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 707 (710)
+.+|+....+...++.-. ...++.+...+++ ++.+|++||+|+.+.++...++ ....++.++||.||||+.
T Consensus 567 ~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~ 639 (727)
T KOG0498|consen 567 HIKRKGEEELALEEEESA----IRGDDRGSKSLLR---AGILASRFAANGRPPLHTAASRGSSDCALLLLQKPADPDFSD 639 (727)
T ss_pred HHHhhccchhhhhcchhh----hccccccchhhhh---cccccccccccCCCccccccccCccccccccCCCCCCCCccc
Confidence 999997766655433221 1113334446778 8999999999999999876432 223578999999999996
Q ss_pred CC
Q 005173 708 VD 709 (710)
Q Consensus 708 ~~ 709 (710)
++
T Consensus 640 ~~ 641 (727)
T KOG0498|consen 640 AE 641 (727)
T ss_pred cc
Confidence 53
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.4e-67 Score=631.62 Aligned_cols=458 Identities=21% Similarity=0.343 Sum_probs=384.0
Q ss_pred cccccccccceeeCCCChhHHHHHHHHHHHHHHHHHHhhhhccccccccccccccCCCchhhHHHHHHHHHHHHHHHHHH
Q 005173 66 FSEDYELVEKVILDPRGPIINRWNKIFLVACLVSLFVDPLFFYLPEAKKNACINVSVPLEIILTVIRSLADAFYFVRIFI 145 (710)
Q Consensus 66 ~~~~~~~~~~~ii~P~s~~~~~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~c~~~~~~~~~~~~~i~~~~D~~f~~Di~l 145 (710)
+.++.-..+++||+|.++++++||.++++++++++++.|+.++|... .....+.+++.++|++|++||++
T Consensus 42 ~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~----------~~~~~~~~~d~i~~~~F~iDi~l 111 (823)
T PLN03192 42 YNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNA----------SPKRGLEIADNVVDLFFAVDIVL 111 (823)
T ss_pred cccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCC----------CCCCCeeeHHHHHHHHHHHHHHh
Confidence 44455556689999999999999999999999999999999877311 11224677899999999999999
Q ss_pred hhceeEEcCCCcccCCCeEeeChHHHHHHHhhhhhHhHhhhcCCHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHHH
Q 005173 146 RFRTAFVAPSSRVLGRGDLVIDPSKISSRYLRKDFWLDIMAAQPIPQLLLWAVIPYLKGSSMVSTKNVIRLIIIFQYLLR 225 (710)
Q Consensus 146 ~F~tay~~~~s~~~~~G~lV~d~~~Ia~rYl~~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lrl~~l~qyl~R 225 (710)
+|+|||+++++ |.+|.||++|++||+++||++|++|++|++++.... ... ........+|+++|+ .|
T Consensus 112 ~f~~ay~d~~~-----~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~-~~~---~~~~~~~~~l~llrl----~R 178 (823)
T PLN03192 112 TFFVAYIDPRT-----QLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLI-TGT---VKLNLSYSLLGLLRF----WR 178 (823)
T ss_pred heeEEEEeCCC-----cEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHh-cCC---ccchHHHHHHHHHHH----HH
Confidence 99999999863 789999999999999999999999999998775432 111 111122334444433 35
Q ss_pred HHhHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCCCcccccccCCCCCC
Q 005173 226 LYLTFPLSYQIIKASGVLLETSWAGAAYNLMLYMLASHVLGACWYLLSVERQEECWRKVCRSHHLECNIGFFDCHLVKDS 305 (710)
Q Consensus 226 l~ri~~l~~~i~~~~~~~~~t~~~~~~~~lll~~l~~H~~ac~wyll~~~~~~~cw~~~c~~~~~~c~~~~l~~~~~~~~ 305 (710)
+.|+.+++.++++...+ ...|...+..+++.++++||+||+||+++.. + ..
T Consensus 179 l~ri~~~~~~le~~~~~--~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~--------------------~-------~~ 229 (823)
T PLN03192 179 LRRVKQLFTRLEKDIRF--SYFWIRCARLLSVTLFLVHCAGCLYYLIADR--------------------Y-------PH 229 (823)
T ss_pred HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------c-------CC
Confidence 55555666655554332 1234455555556667899999999999831 0 03
Q ss_pred CcccccccccccccCCCCCCCCcccchhhhhhhcccCCchHHHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHH
Q 005173 306 SRVNLFQMSNISSLCDPKSNYYQFGIFADAVILGVTASRFLDKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAIL 385 (710)
Q Consensus 306 ~~~sW~~~~~l~~~c~~~~~~~~~gi~~~al~~~i~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~ 385 (710)
.+.+|+.. ..+++.+.+++.+|++|+||+++|||||||||++|.|..|++|++++|++
T Consensus 230 ~~~~Wi~~----------------------~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~ 287 (823)
T PLN03192 230 QGKTWIGA----------------------VIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLF 287 (823)
T ss_pred CCCchHHH----------------------hhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHH
Confidence 45689731 11223467899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCChHHHHhcCCchhHHH
Q 005173 386 GLTLFGLLIGNMQTYLQSTTVRLEEWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRD 465 (710)
Q Consensus 386 G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~g~de~~ll~~Lp~~Lr~~ 465 (710)
|+++|||+||+|++++++.+.+.++|+++++.+++||++++||++||+||++|++|+|.. .+.+++++++.||++||.+
T Consensus 288 g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~ 366 (823)
T PLN03192 288 NLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLIDQLPKSICKS 366 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHHHHcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999985 5689999999999999999
Q ss_pred HHHHHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCC
Q 005173 466 IKRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGP 545 (710)
Q Consensus 466 I~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~ 545 (710)
|..+++.+.++++|+|++++++++.+++..++++.|.|||.|+.+||+++++|||.+|.|+++..+++++.+ +..+++
T Consensus 367 i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~--l~~l~~ 444 (823)
T PLN03192 367 ICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERV--VGTLGC 444 (823)
T ss_pred HHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCccee--eEEccC
Confidence 999999999999999999999999999999999999999999999999999999999999999877777755 789999
Q ss_pred CCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 546 GDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 546 Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
|++|||.+++.. .| +.++++|.++|+++.|++++|.++++++|+.....++...+
T Consensus 445 Gd~FGE~~~l~~---~p------~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~ 499 (823)
T PLN03192 445 GDIFGEVGALCC---RP------QSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQ 499 (823)
T ss_pred CCEecchHHhcC---CC------CCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999988532 22 77999999999999999999999999999988777776655
No 3
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-65 Score=542.25 Aligned_cols=513 Identities=20% Similarity=0.333 Sum_probs=419.1
Q ss_pred cccceeeCCCChhHHHHHHHHHHHHHHHHHHhhhhccccccccccccccCCCchhhHHHHHHHHHHHHHHHHHHhhceeE
Q 005173 72 LVEKVILDPRGPIINRWNKIFLVACLVSLFVDPLFFYLPEAKKNACINVSVPLEIILTVIRSLADAFYFVRIFIRFRTAF 151 (710)
Q Consensus 72 ~~~~~ii~P~s~~~~~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~c~~~~~~~~~~~~~i~~~~D~~f~~Di~l~F~tay 151 (710)
+..+.||..++.|+..||++++++.+|++++.|+-++|..-. .....|.+++.++|++|++||+++|+|.|
T Consensus 204 KTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~---------~~~vs~lvvDSiVDVIF~vDIvLNFHTTF 274 (971)
T KOG0501|consen 204 KTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQ---------RNNVSWLVVDSIVDVIFFVDIVLNFHTTF 274 (971)
T ss_pred CCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccc---------cCceeEEEecchhhhhhhhhhhhhcceee
Confidence 444779999999999999999999999999999998774221 12346778999999999999999999999
Q ss_pred EcCCCcccCCCeEeeChHHHHHHHhhhhhHhHhhhcCCHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHHHHHhHhh
Q 005173 152 VAPSSRVLGRGDLVIDPSKISSRYLRKDFWLDIMAAQPIPQLLLWAVIPYLKGSSMVSTKNVIRLIIIFQYLLRLYLTFP 231 (710)
Q Consensus 152 ~~~~s~~~~~G~lV~d~~~Ia~rYl~~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lrl~~l~qyl~Rl~ri~~ 231 (710)
+.|. ||+|.||+.|..+|+|+||+||++|+||++.+..+- ..+..+-.++..|+ +.||+|+.+
T Consensus 275 VGPg------GEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~----~~degI~SLFSaLK-------VVRLLRLGR 337 (971)
T KOG0501|consen 275 VGPG------GEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFE----RDDEGIGSLFSALK-------VVRLLRLGR 337 (971)
T ss_pred ecCC------CceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhh----cccccHHHHHHHHH-------HHHHHHHHH
Confidence 9996 999999999999999999999999999999887652 12223334455555 467888888
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCCCcccccccCCCCCCCccccc
Q 005173 232 LSYQIIKASGVLLETSWAGAAYNLMLYMLASHVLGACWYLLSVERQEECWRKVCRSHHLECNIGFFDCHLVKDSSRVNLF 311 (710)
Q Consensus 232 l~~~i~~~~~~~~~t~~~~~~~~lll~~l~~H~~ac~wyll~~~~~~~cw~~~c~~~~~~c~~~~l~~~~~~~~~~~sW~ 311 (710)
+.+++.++..+ ..+-.+..+..|+|++||+||+||.+|.++- +.+ ..+....++|+
T Consensus 338 VaRKLD~YlEY----GAA~LvLLlC~y~lvAHWlACiWysIGd~ev------------------~~~--~~n~i~~dsWL 393 (971)
T KOG0501|consen 338 VARKLDHYLEY----GAAVLVLLLCVYGLVAHWLACIWYSIGDYEV------------------RDE--MDNTIQPDSWL 393 (971)
T ss_pred HHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHhheeccchhe------------------ecc--cccccccchHH
Confidence 88888776543 2233455566799999999999999996421 000 01124567886
Q ss_pred ccccccccCCCCCCCCcccchhhhhhhc--cc-CCchHHHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHH
Q 005173 312 QMSNISSLCDPKSNYYQFGIFADAVILG--VT-ASRFLDKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLT 388 (710)
Q Consensus 312 ~~~~l~~~c~~~~~~~~~gi~~~al~~~--i~-~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~ 388 (710)
- ....+...+|+|. +.++ .+ .++--..|+.|+|+.++.|||||+|.+.|.+..|.+|++.+||+|.+
T Consensus 394 ~-----kLa~~~~tpY~~~-----~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aL 463 (971)
T KOG0501|consen 394 W-----KLANDIGTPYNYN-----LSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGAL 463 (971)
T ss_pred H-----HHHhhcCCCceec-----cCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHH
Confidence 2 1222234455553 1111 12 45666899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCChHHHHhcCCchhHHHHHH
Q 005173 389 LFGLLIGNMQTYLQSTTVRLEEWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKR 468 (710)
Q Consensus 389 lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~g~de~~ll~~Lp~~Lr~~I~~ 468 (710)
+||.++|+|++++|++++....|.+.++.+.+||+-.++|+.|.+||.+|.--.|..++|+|.+++|..+|+++|.||+.
T Consensus 464 LYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICV 543 (971)
T KOG0501|consen 464 LYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICV 543 (971)
T ss_pred HHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCe
Q 005173 469 HLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDF 548 (710)
Q Consensus 469 ~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~ 548 (710)
|+..+.....|.|+-.++..+++++..++.....|||.|+..||.++.+.||++|.+++...|+- +.+++.||.
T Consensus 544 HLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDEV------VAILGKGDV 617 (971)
T KOG0501|consen 544 HLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDEV------VAILGKGDV 617 (971)
T ss_pred ecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCcE------EEEeecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999875542 799999999
Q ss_pred ecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHH
Q 005173 549 CGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFRCHSPQWRTWAACFIQAAWF 628 (710)
Q Consensus 549 fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r~~s~~~~~~~~~~~q~~~~ 628 (710)
||+.. |.-. ....+.++|+|+|.|.+..|.++.+.++++-|..++...-+... +.-++-.
T Consensus 618 FGD~F--WK~~-----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl~-------------LTyNLr~ 677 (971)
T KOG0501|consen 618 FGDEF--WKEN-----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNLT-------------LTYNLRH 677 (971)
T ss_pred chhHH--hhhh-----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhcee-------------eEeeccc
Confidence 99973 3221 23347789999999999999999999999887766543322222 1233556
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhcccCCCCCCCCCc-hhHHHHHHHHH
Q 005173 629 RYKRRKEAAELKKREDMISMSDQATDQKESSSPSMGSG-QFTSYAAKLAA 677 (710)
Q Consensus 629 r~~~R~~~~~~~~~eery~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 677 (710)
|...||+++..+++|+|.+ +...+...+..+ |++.+-+||..
T Consensus 678 RiiFRKvaDVKrEkE~~~k-------rKNE~~L~lp~DHpvRklf~rfr~ 720 (971)
T KOG0501|consen 678 RIIFRKVADVKREKELRAK-------RKNEPKLTLPNDHPVRKLFQRFRQ 720 (971)
T ss_pred eeeeeehhhhhhhHHHHHh-------hcCCCCCCCCCCchHHHHHHHHhh
Confidence 7788999999999998875 222334566666 89999888864
No 4
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1e-60 Score=504.50 Aligned_cols=426 Identities=23% Similarity=0.356 Sum_probs=358.0
Q ss_pred HHHHHHHHHhhhhccccccccccccccCCCchhhHHHHHHHHHHHHHHHHHHhhceeEEcCCCcccCCCeEeeChHHHHH
Q 005173 94 VACLVSLFVDPLFFYLPEAKKNACINVSVPLEIILTVIRSLADAFYFVRIFIRFRTAFVAPSSRVLGRGDLVIDPSKISS 173 (710)
Q Consensus 94 i~~~~~~~~~Pl~~~~~~~~~~~c~~~~~~~~~~~~~i~~~~D~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~ 173 (710)
+.++|++++.+..++|+.++ ...-..|..++++.|++|++||+++.||+|+++ |.+|.|-.+..+
T Consensus 5 ~~vLYN~~~li~r~~F~di~--------~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleq-------GllV~~~~Kl~~ 69 (536)
T KOG0500|consen 5 LGVLYNMIVLIVRAAFDDIQ--------SSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQ-------GLLVKDTSKLRK 69 (536)
T ss_pred EehHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhc-------CeeehhhHHHHH
Confidence 45788888888888887654 224457889999999999999999999999995 999999999999
Q ss_pred HHhhh-hhHhHhhhcCCHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhhhhhHHHHH
Q 005173 174 RYLRK-DFWLDIMAAQPIPQLLLWAVIPYLKGSSMVSTKNVIRLIIIFQYLLRLYLTFPLSYQIIKASGVLLETSWAGAA 252 (710)
Q Consensus 174 rYl~~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lrl~~l~qyl~Rl~ri~~l~~~i~~~~~~~~~t~~~~~~ 252 (710)
||.++ .|.+|++|++|++.+.++. ++.. ..|+ .||+|++|++..+.++..--.. ..+..+
T Consensus 70 hY~~s~~f~lD~l~liP~D~l~~~~------~~~~-----~~r~-------nRllk~yRl~~F~~rTetrT~~-Pn~fri 130 (536)
T KOG0500|consen 70 HYVHSTQFKLDVLSLIPLDLLLFKD------GSAS-----LERL-------NRLLKIYRLFEFFDRTETRTTY-PNAFRI 130 (536)
T ss_pred HHHHhhhhhhhhhhhcchhHHhhcC------Ccch-----HHHH-------HHHHHHHHHHHHHHHhccccCC-chHHHH
Confidence 99988 9999999999999998762 2211 2232 4666677777777766543211 123335
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHHhhhccCCCCcccccccCCCCCCCcccccccccccccCCCCCCCCcccc
Q 005173 253 YNLMLYM-LASHVLGACWYLLSVERQEECWRKVCRSHHLECNIGFFDCHLVKDSSRVNLFQMSNISSLCDPKSNYYQFGI 331 (710)
Q Consensus 253 ~~lll~~-l~~H~~ac~wyll~~~~~~~cw~~~c~~~~~~c~~~~l~~~~~~~~~~~sW~~~~~l~~~c~~~~~~~~~gi 331 (710)
.+|+.+. ++.||.||++|++|... | .+.++|.... + .++ .|+
T Consensus 131 ~~lv~~~~ilfHWNaClYf~iS~~~--------------g-------------~~~d~wvY~~-i------~d~--~~~- 173 (536)
T KOG0500|consen 131 SKLVHYCLILFHWNACLYFLISKAI--------------G-------------FTTDDWVYPK-I------NDP--EFA- 173 (536)
T ss_pred HHHHHHHHHHHHHhhHHHHhhhHhc--------------C-------------ccccccccCC-c------cCc--ccc-
Confidence 6676666 57999999999999531 1 3445686321 1 000 111
Q ss_pred hhhhhhhcccCCchHHHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 005173 332 FADAVILGVTASRFLDKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRLEEW 411 (710)
Q Consensus 332 ~~~al~~~i~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~ 411 (710)
+-...++..+|++|+||+..||||+|. ..+|.+..|.+|.|+-.++|+++||.++|++++++.++++...||
T Consensus 174 -------~c~~~n~~ReY~~S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EF 245 (536)
T KOG0500|consen 174 -------TCDAGNLTREYLYSLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEF 245 (536)
T ss_pred -------ccchhHHHHHHHHHHHHHhhhhhhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHH
Confidence 011356889999999999999999996 567888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCChHHHHhcCCchhHHHHHHHHhhhhhhhcccCCCCCHHHHHH
Q 005173 412 RIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRHLCLDLVRQVPLFDLMDDRMLVA 491 (710)
Q Consensus 412 ~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~g~de~~ll~~Lp~~Lr~~I~~~l~~~~L~~vplF~~ls~~~l~~ 491 (710)
+.+++-+++||++|++|..|+.||.+||.|.|.+.+-.||+++++.||+.|+.+|+.+++++.|+++++|+.+...++.+
T Consensus 246 q~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~e 325 (536)
T KOG0500|consen 246 QAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVE 325 (536)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCccc
Q 005173 492 VCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTR 571 (710)
Q Consensus 492 l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~ 571 (710)
+...++++.|.|||+|+++||.+.+||+|.+|.+++...||+.. ...+++|++|||.++++ ..+ +.+..+|++
T Consensus 326 lVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~----~~~L~~G~~FGEisIln-i~g--~~~gNRRta 398 (536)
T KOG0500|consen 326 LVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV----FVTLKAGSVFGEISILN-IKG--NKNGNRRTA 398 (536)
T ss_pred HHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE----EEEecCCceeeeeEEEE-EcC--cccCCccee
Confidence 99999999999999999999999999999999999998777654 68899999999998854 332 345667999
Q ss_pred EEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHH
Q 005173 572 TVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLR 605 (710)
Q Consensus 572 tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~ 605 (710)
+|+++..+++++|+++|+.+++++||+-...+++
T Consensus 399 nvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~ 432 (536)
T KOG0500|consen 399 NVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEE 432 (536)
T ss_pred eeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999999999987655553
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-53 Score=454.56 Aligned_cols=424 Identities=21% Similarity=0.355 Sum_probs=360.0
Q ss_pred cceeeCCCC-hhHHHHHHHHHHHHHHHHHHhhhhccccccccccccccCCCchhhHHHHHHHHHHHHHHHHHH-hhceeE
Q 005173 74 EKVILDPRG-PIINRWNKIFLVACLVSLFVDPLFFYLPEAKKNACINVSVPLEIILTVIRSLADAFYFVRIFI-RFRTAF 151 (710)
Q Consensus 74 ~~~ii~P~s-~~~~~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~c~~~~~~~~~~~~~i~~~~D~~f~~Di~l-~F~tay 151 (710)
.+..|||++ ++...|-.++.++..++++++|+...||..+. .....|.+.++++|++|++||++ +=|.-|
T Consensus 216 ~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~--------dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~f 287 (815)
T KOG0499|consen 216 LPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTA--------DNIHYWLIADYICDIIYLLDMLFIQPRLQF 287 (815)
T ss_pred CCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccc--------ccchhhhhHHHHhhHHHHHHHhhhhhhhee
Confidence 356899999 99999999999999999999999999998752 12346888999999999999965 666777
Q ss_pred EcCCCcccCCCeEeeChHHHHHHHhhh-hhHhHhhhcCCHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHHHHHhHh
Q 005173 152 VAPSSRVLGRGDLVIDPSKISSRYLRK-DFWLDIMAAQPIPQLLLWAVIPYLKGSSMVSTKNVIRLIIIFQYLLRLYLTF 230 (710)
Q Consensus 152 ~~~~s~~~~~G~lV~d~~~Ia~rYl~~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lrl~~l~qyl~Rl~ri~ 230 (710)
+- .|.+|.|.+...+||+++ .|-+|++|+||+++++.++ +...+++..++|++.-++.
T Consensus 288 vr-------gG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~-----G~~p~wR~~R~lK~~sF~e--------- 346 (815)
T KOG0499|consen 288 VR-------GGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFF-----GFNPMWRANRMLKYTSFFE--------- 346 (815)
T ss_pred ee-------CceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHh-----ccchhhhhhhHHHHHHHHH---------
Confidence 66 499999999999999988 9999999999999988754 2234444444444433322
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhHHHHHhhhccCCCCcccccccCCCCCCCccc
Q 005173 231 PLSYQIIKASGVLLETSWAGAAYNLMLYML-ASHVLGACWYLLSVERQEECWRKVCRSHHLECNIGFFDCHLVKDSSRVN 309 (710)
Q Consensus 231 ~l~~~i~~~~~~~~~t~~~~~~~~lll~~l-~~H~~ac~wyll~~~~~~~cw~~~c~~~~~~c~~~~l~~~~~~~~~~~s 309 (710)
++..+++ + ...+++..+...+.||| +.|+.+|++|..|-+. +.+.+-
T Consensus 347 -~~~~Le~---i-~s~~y~~RV~rT~~YmlyilHinacvYY~~Sayq---------------------------glG~~r 394 (815)
T KOG0499|consen 347 -FNHHLES---I-MSKAYIYRVIRTTGYLLYILHINACVYYWASAYQ---------------------------GLGTTR 394 (815)
T ss_pred -HHHHHHH---H-hcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhc---------------------------ccccce
Confidence 1222221 1 22334444445555664 7899999999987431 145678
Q ss_pred ccccccccccCCCCCCCCcccchhhhhhhcccCCchHHHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHH
Q 005173 310 LFQMSNISSLCDPKSNYYQFGIFADAVILGVTASRFLDKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTL 389 (710)
Q Consensus 310 W~~~~~l~~~c~~~~~~~~~gi~~~al~~~i~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~l 389 (710)
|+.. .-...|+.|+||++.|++|+| |+-.|++..|++|..+--+.|++.
T Consensus 395 WVyd------------------------------g~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFv 443 (815)
T KOG0499|consen 395 WVYD------------------------------GEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFV 443 (815)
T ss_pred eEEc------------------------------CCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHH
Confidence 8731 112679999999999999999 889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCChHHHHhcCCchhHHHHHHH
Q 005173 390 FGLLIGNMQTYLQSTTVRLEEWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRH 469 (710)
Q Consensus 390 fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~g~de~~ll~~Lp~~Lr~~I~~~ 469 (710)
||.+||.|-.++...+...++||..++++-.||+..+||.+.|.|||.+|+|.|..++-.||.++|..||..|+.|+...
T Consensus 444 FslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~ 523 (815)
T KOG0499|consen 444 FSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAID 523 (815)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCee
Q 005173 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFC 549 (710)
Q Consensus 470 l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 549 (710)
+....|.+|.+|++++.+++..++-+++.+.|-|||+|++.||.+.+||+|..|.|.+....+|.. ++..|.+|+.|
T Consensus 524 V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~---Vl~tL~~GsVF 600 (815)
T KOG0499|consen 524 VNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTK---VLVTLKAGSVF 600 (815)
T ss_pred eehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCE---EEEEeccccee
Confidence 999999999999999999999999999999999999999999999999999999999987666654 36999999999
Q ss_pred cchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHH
Q 005173 550 GEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRK 598 (710)
Q Consensus 550 Ge~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~ 598 (710)
||++++- ..+ ..+|+++|+|...|.+++|+++|+.+++..||+
T Consensus 601 GEISLLa-igG-----~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~ 643 (815)
T KOG0499|consen 601 GEISLLA-IGG-----GNRRTANVVAHGFANLFVLDKKDLNEILVHYPD 643 (815)
T ss_pred eeeeeee-ecC-----CCccchhhhhcccceeeEecHhHHHHHHHhCcc
Confidence 9998853 222 125999999999999999999999999999994
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.57 E-value=6.9e-14 Score=143.89 Aligned_cols=127 Identities=15% Similarity=0.158 Sum_probs=112.1
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecc
Q 005173 472 LDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGE 551 (710)
Q Consensus 472 ~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 551 (710)
.+.++.+|+|+.++++.++.++...+.+.|++|+.|+++||+++.+|+|.+|.++++...+|++.+ +..+.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 457889999999999999999999999999999999999999999999999999999877676654 799999999999
Q ss_pred hhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 552 ELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 552 ~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
.+++ ...| +..+++|+++|+++.+++++|.+++.++|.+....++...+
T Consensus 84 ~~~~---~~~~------~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~ 132 (236)
T PRK09392 84 AAVV---LDAP------YLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAG 132 (236)
T ss_pred HHHh---CCCC------CceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 8763 3233 77899999999999999999999999999887766655444
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.47 E-value=3.1e-12 Score=129.04 Aligned_cols=115 Identities=14% Similarity=0.134 Sum_probs=99.2
Q ss_pred CCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhccCC
Q 005173 482 DLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWALDP 560 (710)
Q Consensus 482 ~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~ 560 (710)
+.+|++.++.++..++.+.|++|+.|+.+|++++.+|+|.+|.++++..+ +|++.. +..+++|++||+..++. +
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~~---~ 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFE---E 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhhcc---C
Confidence 46899999999999999999999999999999999999999999999765 566644 78999999999987642 1
Q ss_pred CCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHH
Q 005173 561 RPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRH 606 (710)
Q Consensus 561 ~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~ 606 (710)
. +.+..+++|.++|+++.+++++|.+++.++|++....++.
T Consensus 81 ~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 121 (211)
T PRK11753 81 G-----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQ 121 (211)
T ss_pred C-----CCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHH
Confidence 1 1267899999999999999999999999999887655443
No 8
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.44 E-value=3.5e-12 Score=138.07 Aligned_cols=193 Identities=17% Similarity=0.270 Sum_probs=116.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhceeEEcCCCcccCCCeEeeChHHHHHHHhhh-hhHhHhhhcCCHHHHHHHhhccCCC
Q 005173 125 EIILTVIRSLADAFYFVRIFIRFRTAFVAPSSRVLGRGDLVIDPSKISSRYLRK-DFWLDIMAAQPIPQLLLWAVIPYLK 203 (710)
Q Consensus 125 ~~~~~~i~~~~D~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~rYl~~-~F~iDlls~lPl~~i~~~~~~~~~~ 203 (710)
...+.+++.++-+.|.+.++++|-. +|+ ..+++|+ -=+||++|++||.+=+........+
T Consensus 239 ~p~l~~vE~vCi~WFT~E~llR~~~---~P~----------------k~~F~k~pLNIIDllAIlPFYielll~~~~~~~ 299 (477)
T KOG3713|consen 239 HPILTYVETVCIAWFTFEYLLRFLV---APN----------------KLEFFKSPLNIIDLLAILPFYLELLLTLFGGES 299 (477)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHc---Cch----------------HHHHHhCcchHHHHHHHHHHHHHHHHHHhccch
Confidence 3468899999999999999999964 343 2456665 4589999999996543332222100
Q ss_pred CCchhhhhhHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhh--hh--hHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhh
Q 005173 204 GSSMVSTKNVIRLIIIFQYLLRLYLTFPLSYQIIKASGVLL--ET--SWAGAAYNLMLYM-LASHVLGACWYLLSVERQE 278 (710)
Q Consensus 204 ~~~~~~~~~~Lrl~~l~qyl~Rl~ri~~l~~~i~~~~~~~~--~t--~~~~~~~~lll~~-l~~H~~ac~wyll~~~~~~ 278 (710)
....-+...++|++|+ .|++|+++|.+ ..+|.-+ .| +-+.-+-.|++|+ +..-+++.+-|++--.
T Consensus 300 ~~~l~~~~~vvrvlR~----lRI~RI~KLaR---hS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~--- 369 (477)
T KOG3713|consen 300 LKELENAGLVVRVLRV----LRILRIFKLAR---HSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKD--- 369 (477)
T ss_pred HHHHhhhhhhHHHHHH----HHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---
Confidence 1111111123333222 24444444433 2333211 11 1112233334444 3456677777764210
Q ss_pred HHHHHhhhccCCCCcccccccCCCCCCCcccccccccccccCCCCCCCCcccchhhhhhhcccCCchHHHHHHHHHHHHH
Q 005173 279 ECWRKVCRSHHLECNIGFFDCHLVKDSSRVNLFQMSNISSLCDPKSNYYQFGIFADAVILGVTASRFLDKYFYCLWWGLR 358 (710)
Q Consensus 279 ~cw~~~c~~~~~~c~~~~l~~~~~~~~~~~sW~~~~~l~~~c~~~~~~~~~gi~~~al~~~i~~~~~~~~Y~~slyw~l~ 358 (710)
..... +..--.|+||++.
T Consensus 370 --------------------------~~~~~------------------------------------FtSIPa~~WWaiV 387 (477)
T KOG3713|consen 370 --------------------------EPDTK------------------------------------FTSIPAGFWWAVV 387 (477)
T ss_pred --------------------------CCCCC------------------------------------CccccchhheeeE
Confidence 00011 1233468999999
Q ss_pred HhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 005173 359 NLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRL 408 (710)
Q Consensus 359 tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~ 408 (710)
|||||||||.+|.|...++++...++.|+++.|+-|..|-+-+.....+.
T Consensus 388 TMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~ 437 (477)
T KOG3713|consen 388 TMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSEL 437 (477)
T ss_pred EEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHH
Confidence 99999999999999999999999999999999988776666555444433
No 9
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.39 E-value=4.9e-12 Score=112.91 Aligned_cols=112 Identities=27% Similarity=0.505 Sum_probs=97.9
Q ss_pred cCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhcc
Q 005173 480 LFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWAL 558 (710)
Q Consensus 480 lF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l 558 (710)
+|+.++++.+..++..++...+.+|++|+.+|++.+.+|+|.+|.++++..+ +|++.. +..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHHh---
Confidence 4788999999999999999999999999999999999999999999998765 445544 7889999999998764
Q ss_pred CCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHH
Q 005173 559 DPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCK 602 (710)
Q Consensus 559 ~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk 602 (710)
... .+..+++|.++|+++.++.++|.+++.++|.+..+
T Consensus 76 ~~~------~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (115)
T cd00038 76 GNG------PRSATVRALTDSELLVLPRSDFRRLLQEYPELARR 113 (115)
T ss_pred cCC------CCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHh
Confidence 222 26789999999999999999999999999976543
No 10
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.36 E-value=2.9e-12 Score=126.68 Aligned_cols=193 Identities=17% Similarity=0.251 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHhhceeEEcCCCcccCCCeEeeChHHHHHHHhhh-hhHhHhhhcCCHHHHHHHhhccCCCCCchh
Q 005173 130 VIRSLADAFYFVRIFIRFRTAFVAPSSRVLGRGDLVIDPSKISSRYLRK-DFWLDIMAAQPIPQLLLWAVIPYLKGSSMV 208 (710)
Q Consensus 130 ~i~~~~D~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~rYl~~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~~ 208 (710)
+++.+.+++|.+|+++++.+.... +++|+++ |.++|+++++|....+.....+..+.....
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~------------------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK------------------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLL 62 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-------------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCH
T ss_pred CChHHHHHHHHHHHHHHHHHhccH------------------HHHHhcChhhcccccccccccccccccccccccccceE
Confidence 368899999999999999864332 5789987 777999999998655443211110000122
Q ss_pred hhhhHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhcc
Q 005173 209 STKNVIRLIIIFQYLLRLYLTFPLSYQIIKASGVLLETSWAGAAYNLMLYMLASHVLGACWYLLSVERQEECWRKVCRSH 288 (710)
Q Consensus 209 ~~~~~Lrl~~l~qyl~Rl~ri~~l~~~i~~~~~~~~~t~~~~~~~~lll~~l~~H~~ac~wyll~~~~~~~cw~~~c~~~ 288 (710)
...+++|+ .|++|+.+..+.+.+..+.+. .........++++++..|+.||+++.+.-..+..|+.
T Consensus 63 ~~~~~l~~-------~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~------ 128 (200)
T PF00520_consen 63 RIFRLLRL-------LRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCD------ 128 (200)
T ss_dssp HHHHHHHH-------HHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----------
T ss_pred EEEEeecc-------ccccccccccccccccccccc-cccccccccccccccccccccchhheecccccccccc------
Confidence 22233332 244444444444444333332 2223344555667788999999999887432211110
Q ss_pred CCCCcccccccCCCCCCCcccccccccccccCCCCCCCCcccchhhhhhhcccCCchHHHHHHHHHHHHHHhccccCCCc
Q 005173 289 HLECNIGFFDCHLVKDSSRVNLFQMSNISSLCDPKSNYYQFGIFADAVILGVTASRFLDKYFYCLWWGLRNLSSLGQNLF 368 (710)
Q Consensus 289 ~~~c~~~~l~~~~~~~~~~~sW~~~~~l~~~c~~~~~~~~~gi~~~al~~~i~~~~~~~~Y~~slyw~l~tlstvG~gd~ 368 (710)
. . +.. .++....+..+.|..|+||.++++++.|+|+.
T Consensus 129 -----~------------~--~~~------------------------~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~ 165 (200)
T PF00520_consen 129 -----P------------T--WDS------------------------ENDIYGYENFDSFGESLYWLFQTMTGEGWGDV 165 (200)
T ss_dssp ---------------------SS----------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCC
T ss_pred -----c------------c--ccc------------------------ccccccccccccccccccccccccccCCcccc
Confidence 0 0 000 00112334567899999999999999999999
Q ss_pred ccc-----chhHHHHH-HHHHHHHHHHHHHHHHHH
Q 005173 369 TST-----FVWEINFA-IAIAILGLTLFGLLIGNM 397 (710)
Q Consensus 369 ~~~-----~~~E~~f~-i~i~i~G~~lfa~lig~~ 397 (710)
.+. +..+.++. +++.+.+.++++++||+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 166 MPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 887 88899998 777777779999999986
No 11
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.36 E-value=2.8e-11 Score=124.34 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=101.0
Q ss_pred hhhcccCCCCCHHHHHHHHhhcee-EEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecch
Q 005173 475 VRQVPLFDLMDDRMLVAVCERLKP-RLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEE 552 (710)
Q Consensus 475 L~~vplF~~ls~~~l~~l~~~l~~-~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~ 552 (710)
+++.+.|..+++++++.+....+. ..|+||+.|+++||+++++|+|.+|.|+++..+ +|++.+ +.++.+|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 455555557999999999988864 679999999999999999999999999999865 577755 7888999999987
Q ss_pred hhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 005173 553 LLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVF 608 (710)
Q Consensus 553 ~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~ 608 (710)
.++ .. + ...+++|+++|+++.+++++|.+++.++|++....++...
T Consensus 93 ~~~---~~-~------~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~ 138 (235)
T PRK11161 93 AIG---SG-Q------HPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMS 138 (235)
T ss_pred ccc---CC-C------CcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHH
Confidence 542 11 1 3458999999999999999999999999988776655443
No 12
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.34 E-value=3e-11 Score=108.37 Aligned_cols=116 Identities=24% Similarity=0.338 Sum_probs=98.7
Q ss_pred cCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhcc
Q 005173 480 LFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWAL 558 (710)
Q Consensus 480 lF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l 558 (710)
+|.+++++.++.++..++.+.+++|++|+++|++.+.+|||.+|.++++..+ +|++.. +..+.+|++||+..++. .
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~~-~ 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQI--LGILGPGDFFGELALLT-N 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEE--EEeecCCceechhhhcc-C
Confidence 4788999999999999999999999999999999999999999999999765 455534 78999999999997641 1
Q ss_pred CCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHH
Q 005173 559 DPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQL 604 (710)
Q Consensus 559 ~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L 604 (710)
.+. +...+++|.++|+++.++.+++...+..+|.+..+.+
T Consensus 78 ~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 117 (120)
T smart00100 78 SRR------AASATAVALELATLLRIDFRDFLQLLQENPQLLLELL 117 (120)
T ss_pred CCc------ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence 112 2678999999999999999999999999887655443
No 13
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.33 E-value=2e-11 Score=124.97 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=91.6
Q ss_pred HHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCC
Q 005173 490 VAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPS 568 (710)
Q Consensus 490 ~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~ 568 (710)
..+....+.+.|++|+.|+++||+++.+|||.+|.|+++..+ +|++.+ +..+.+|++||+..++ ...+
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~~---~~~~------ 93 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIELI---DKDH------ 93 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehhh---cCCC------
Confidence 457778889999999999999999999999999999999765 667655 7899999999998763 2222
Q ss_pred cccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 005173 569 STRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVF 608 (710)
Q Consensus 569 s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~ 608 (710)
+..+++|+++|+++.+++++|..++.++|.+....++...
T Consensus 94 ~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~ 133 (226)
T PRK10402 94 ETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLS 133 (226)
T ss_pred CCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7789999999999999999999999999987766554433
No 14
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.31 E-value=1.1e-10 Score=116.98 Aligned_cols=123 Identities=26% Similarity=0.411 Sum_probs=102.8
Q ss_pred hhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhh
Q 005173 476 RQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELL 554 (710)
Q Consensus 476 ~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l 554 (710)
...+.|..++++....+......+.+++|++|+++||+++.+|+|.+|.++++..+ +|++.+ +.++++||+||+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l 80 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELAL 80 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHH
Confidence 34567777788888888889999999999999999999999999999999999765 566655 789999999999987
Q ss_pred hhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 555 TWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 555 ~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
+.. .| +..+++|+++|+++.+++++|.+++.+.|.+....++...+
T Consensus 81 ~~~---~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~ 126 (214)
T COG0664 81 LGG---DP------RSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLAR 126 (214)
T ss_pred hcC---CC------ccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 421 12 77999999999999999999999988877776666554444
No 15
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.29 E-value=2e-11 Score=105.19 Aligned_cols=90 Identities=26% Similarity=0.328 Sum_probs=78.2
Q ss_pred EEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcce
Q 005173 499 RLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITE 578 (710)
Q Consensus 499 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~ 578 (710)
+.|++|++|+++|++++++|||++|.++++..+.+.... .+..+++|++||+..++... + +..+++|.++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~---~------~~~~~~a~~~ 71 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQ-IIFFLGPGDIFGEIELLTGK---P------SPFTVIALTD 71 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEE-EEEEEETTEEESGHHHHHTS---B------BSSEEEESSS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceee-eecceeeeccccceeecCCC---c------cEEEEEEccC
Confidence 679999999999999999999999999999877544322 37899999999999875322 2 7899999999
Q ss_pred EEEEEecHHHHHHHHHHhHH
Q 005173 579 VEAFAFVDEDLKFVASQYRK 598 (710)
Q Consensus 579 ~ell~L~~edf~~ll~~~p~ 598 (710)
|+++.|++++|.++++++|+
T Consensus 72 ~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 72 SEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp EEEEEEEHHHHHHHHHHSHH
T ss_pred EEEEEEeHHHHHHHHHhCcC
Confidence 99999999999999999984
No 16
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.21 E-value=2.7e-10 Score=116.90 Aligned_cols=106 Identities=17% Similarity=0.091 Sum_probs=89.5
Q ss_pred HHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCC
Q 005173 490 VAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPS 568 (710)
Q Consensus 490 ~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~ 568 (710)
.+++.....+.|++|+.|+.+||+++++|||.+|.|+++..+ +|++.+ +..+.+|++||+.. . . +
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~----~--~------~ 97 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLES----G--S------T 97 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccC----C--C------c
Confidence 345667788999999999999999999999999999999765 566655 78899999999642 1 1 1
Q ss_pred cccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 569 STRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 569 s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
+..+++|+++|+++.++.++|.+++.++|++....++...+
T Consensus 98 ~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~ 138 (230)
T PRK09391 98 HRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAG 138 (230)
T ss_pred CCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHH
Confidence 56899999999999999999999999999988877766554
No 17
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.19 E-value=3e-11 Score=130.32 Aligned_cols=129 Identities=20% Similarity=0.353 Sum_probs=109.7
Q ss_pred HHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCe
Q 005173 469 HLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDF 548 (710)
Q Consensus 469 ~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~ 548 (710)
.-+.++|+.+|+|+++|++.+..+++.++...|..|++|+++|+.++.+|+|.+|.|.+...+.+.++-..+..++.||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 34678899999999999999999999999999999999999999999999999999999877655332233789999999
Q ss_pred ecchhhhhccCCCCCCCCCCcccEEEEcce-EEEEEecHHHHHHHHHHhHHHHHHHHHH
Q 005173 549 CGEELLTWALDPRPSVILPSSTRTVKAITE-VEAFAFVDEDLKFVASQYRKLHCKQLRH 606 (710)
Q Consensus 549 fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~-~ell~L~~edf~~ll~~~p~l~sk~L~~ 606 (710)
|||-+++. . . .|++++.|... ++++.|++|.|..++....++..+....
T Consensus 348 FGE~al~~--e-d------vRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D 397 (732)
T KOG0614|consen 348 FGERALLG--E-D------VRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGD 397 (732)
T ss_pred hhHHHhhc--c-C------ccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccc
Confidence 99998852 1 1 27899999887 9999999999999999887776544433
No 18
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.16 E-value=6.8e-10 Score=110.24 Aligned_cols=127 Identities=16% Similarity=0.053 Sum_probs=93.5
Q ss_pred CCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEE
Q 005173 504 GTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAF 582 (710)
Q Consensus 504 ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell 582 (710)
|+.|+++||+++.+|+|.+|.|+++..+ +|++.+ +..+++|++||+.+++ ...+ ..+..+++|+++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~~---~~~~----~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSLI---TGHR----SDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeeec---cCCC----CccceEEEEecceEEE
Confidence 7899999999999999999999999754 567754 7999999999998764 2211 0144789999999999
Q ss_pred EecHHHHHHHHHHhHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005173 583 AFVDEDLKFVASQYRKLHCKQLRHVFRCHSPQWRTWAACFIQAAWFRYKRRKEAAELKKRE 643 (710)
Q Consensus 583 ~L~~edf~~ll~~~p~l~sk~L~~~~r~~s~~~~~~~~~~~q~~~~r~~~R~~~~~~~~~e 643 (710)
.+++++|.+++.++|++....++...+ ..................+|....++..++
T Consensus 72 ~i~~~~~~~l~~~~p~l~~~~~~~l~~----~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~ 128 (193)
T TIGR03697 72 AVPIEQVEKAIEEDPDLSMLLLQGLSS----RILQTEMMIETLAHRDMGSRLVSFLLILCR 128 (193)
T ss_pred EeeHHHHHHHHHHChHHHHHHHHHHHH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999988877765544 333333223333444555565555544443
No 19
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.12 E-value=1.6e-09 Score=108.45 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=92.0
Q ss_pred hceeEEeCCCCeeeecCC--CCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCccc
Q 005173 495 RLKPRLCTPGTCPVREED--PVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTR 571 (710)
Q Consensus 495 ~l~~~~~~kge~I~~eGd--~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~ 571 (710)
.++...|++|++|+++|| +++.+|+|++|.|+++..+ +|++.+ +..+.+||+||+..++ . .+ +..
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~~---~-~~------~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEALA---G-AE------RAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHhc---C-CC------CCc
Confidence 467889999999999999 7799999999999999765 677755 8999999999997542 1 22 568
Q ss_pred EEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005173 572 TVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFRCHSPQWRTWAACFIQAAWFRYKRRKEAAELKKRE 643 (710)
Q Consensus 572 tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r~~s~~~~~~~~~~~q~~~~r~~~R~~~~~~~~~e 643 (710)
+++|+++|+++.|+.++| .|++....+++..+..... .+.+.........+|....++.-++
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~~----~~~~~~l~~~~~~~Rla~~Ll~l~~ 134 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLARA----YESIYRLVGQRLKNRIAAALLELSD 134 (202)
T ss_pred eEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHHH----HHHHHHHHhCchHHHHHHHHHHHHH
Confidence 899999999999999987 4666666555555433322 2222233344555666665555444
No 20
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.12 E-value=4.4e-10 Score=125.29 Aligned_cols=113 Identities=19% Similarity=0.324 Sum_probs=97.7
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecc
Q 005173 472 LDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGE 551 (710)
Q Consensus 472 ~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 551 (710)
.+.++++++|++++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+++.+. ++..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~--~l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESR--PEFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcE--EEEEeCCCCEeeh
Confidence 45678899999999999999999999999999999999999999999999999999987644343 3788999999997
Q ss_pred hhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhH
Q 005173 552 ELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYR 597 (710)
Q Consensus 552 ~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p 597 (710)
. + ... .+..+++|.++|+++.|++++|..+....+
T Consensus 85 ~-l----~~~------~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G-L----SGS------VHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h-h----CCC------CcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 5 3 222 277899999999999999999988876644
No 21
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.10 E-value=1.7e-10 Score=124.63 Aligned_cols=121 Identities=18% Similarity=0.293 Sum_probs=106.4
Q ss_pred HHHHHHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeC
Q 005173 465 DIKRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIG 544 (710)
Q Consensus 465 ~I~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~ 544 (710)
.-..++..+.++.-.++++++.+.+..+..+|.+..|.+|++|++|||+++++|.+..|++++.. +|+- ++..+
T Consensus 146 ~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~l----l~~m~ 219 (732)
T KOG0614|consen 146 VGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGKL----LGKMG 219 (732)
T ss_pred ccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCee----eeccC
Confidence 33455667788888999999999999999999999999999999999999999999999999974 3432 79999
Q ss_pred CCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHH
Q 005173 545 PGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLH 600 (710)
Q Consensus 545 ~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~ 600 (710)
+|..|||.++++++. |+++|+|+++|.+|+|+++-|+.++...-...
T Consensus 220 ~gtvFGELAILynct---------RtAsV~alt~~~lWaidR~vFq~IM~~tg~~r 266 (732)
T KOG0614|consen 220 AGTVFGELAILYNCT---------RTASVRALTDVRLWAIDREVFQAIMMRTGLER 266 (732)
T ss_pred CchhhhHHHHHhCCc---------chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987654 89999999999999999999999998765443
No 22
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.07 E-value=1.7e-09 Score=117.65 Aligned_cols=88 Identities=22% Similarity=0.389 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhC
Q 005173 346 LDKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRLEEWRIRRTDTEKWMHHR 425 (710)
Q Consensus 346 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 425 (710)
+..|..++|||+.|+||+||||++|.+-..++.+.++.++|+.+||.--|.+++=+.-+- .|+.|+ ++|-+.|
T Consensus 267 F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKV--Qeq~RQ-----KHf~rrr 339 (654)
T KOG1419|consen 267 FPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKV--QEQHRQ-----KHFNRRR 339 (654)
T ss_pred chhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhh--HHHHHH-----HHHHhhc
Confidence 478999999999999999999999999999999999999999999998887776553221 122222 4677888
Q ss_pred CCCHHHHHHHHHHHH
Q 005173 426 QLPHGLKQSVRKYDQ 440 (710)
Q Consensus 426 ~lp~~L~~rVr~y~~ 440 (710)
+.-..|.+-..|||.
T Consensus 340 ~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 340 NPAASLIQCAWRYYA 354 (654)
T ss_pred chHHHHHHHHHHHHh
Confidence 888899999988875
No 23
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.06 E-value=2.3e-09 Score=117.60 Aligned_cols=116 Identities=17% Similarity=0.247 Sum_probs=102.2
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecc
Q 005173 472 LDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGE 551 (710)
Q Consensus 472 ~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 551 (710)
.+++.+.|.|+.++++.+++|...++...|.+||.|+..|.|.+.+|+|.+|.|++...+|. + +..+..||.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~---v--~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE---V--LDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe---e--eeeeccCccccc
Confidence 46788999999999999999999999999999999999999999999999999999864443 2 799999999999
Q ss_pred hhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHH
Q 005173 552 ELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHC 601 (710)
Q Consensus 552 ~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~s 601 (710)
.+++.... ......|.+|+.+|.|+++.|.+++.++|.++.
T Consensus 81 ~~l~~~~~---------~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ 121 (610)
T COG2905 81 SSLFTELN---------KQRYMAAEEDSLCYLLPKSVFMQLMEENPEFAD 121 (610)
T ss_pred hhhcccCC---------CcceeEeeccceEEecCHHHHHHHHHhCcHHHH
Confidence 98854333 345788888999999999999999999997764
No 24
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.04 E-value=6.2e-10 Score=115.76 Aligned_cols=122 Identities=20% Similarity=0.286 Sum_probs=104.0
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecc
Q 005173 472 LDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGE 551 (710)
Q Consensus 472 ~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 551 (710)
...+++.-+|++++++.+..+...|....++.|+.|+.+||.++.+|+|.+|.+.++.. |+- +..+.+|..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~~~----v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--GTY----VTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--CeE----EeeeCCCCchhh
Confidence 56677788999999999999999999999999999999999999999999999999975 221 689999999999
Q ss_pred hhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 005173 552 ELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVF 608 (710)
Q Consensus 552 ~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~ 608 (710)
.++.++ +++.+|+.|.+++.+|.|++..|..++-.......++.....
T Consensus 195 lALmyn---------~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l 242 (368)
T KOG1113|consen 195 LALMYN---------PPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFL 242 (368)
T ss_pred hHhhhC---------CCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhh
Confidence 998642 238999999999999999999998887666555555444433
No 25
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.96 E-value=9.2e-11 Score=121.10 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005173 350 FYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQ 402 (710)
Q Consensus 350 ~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~ 402 (710)
-.+|||++.|||||||||..|.+.+.++...+++|.|++-.|+-+..+.+-+.
T Consensus 395 PdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFn 447 (507)
T KOG1545|consen 395 PDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFN 447 (507)
T ss_pred cccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEeccc
Confidence 35899999999999999999999999999999999999988876655554443
No 26
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.85 E-value=2.2e-08 Score=84.94 Aligned_cols=56 Identities=16% Similarity=0.333 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005173 347 DKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQ 402 (710)
Q Consensus 347 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~ 402 (710)
..|..++||++.++||+||||+.|.+..+++++++.+++|+.++++.++.+.+.++
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35788999999999999999999999999999999999999999999999999875
No 27
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.72 E-value=3e-08 Score=103.42 Aligned_cols=119 Identities=18% Similarity=0.279 Sum_probs=104.7
Q ss_pred HHHHHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCC
Q 005173 466 IKRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGP 545 (710)
Q Consensus 466 I~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~ 545 (710)
-++.+|.++|+++|++..++..+...++..+.+..|.+|+.|+.+|++++.+|+|.+|.|.+....+| + .+ .++.
T Consensus 233 kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~---v-~v-kl~~ 307 (368)
T KOG1113|consen 233 KKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG---V-EV-KLKK 307 (368)
T ss_pred hhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC---e-EE-Eech
Confidence 35668899999999999999999999999999999999999999999999999999999998765544 2 24 9999
Q ss_pred CCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHH
Q 005173 546 GDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRK 598 (710)
Q Consensus 546 Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~ 598 (710)
||+|||.+++. ..| +.++|.|.++..+..++++.|+.|+.-.-+
T Consensus 308 ~dyfge~al~~---~~p------r~Atv~a~~~~kc~~~dk~~ferllgpc~d 351 (368)
T KOG1113|consen 308 GDYFGELALLK---NLP------RAATVVAKGRLKCAKLDKPRFERLLGPCQD 351 (368)
T ss_pred hhhcchHHHHh---hch------hhceeeccCCceeeeeChHHHHHHhhHHHH
Confidence 99999998853 233 889999999999999999999999987543
No 28
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.54 E-value=7.1e-08 Score=104.85 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCC
Q 005173 347 DKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRLEEWRIRRTDTEKWMHHRQ 426 (710)
Q Consensus 347 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~ 426 (710)
-.|..|.|+-+.||+||||||+...+...++|.+|..+.|+.+||--+..+..++.+-..---|+...-- -+|--
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehg-----kkhiv 361 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHG-----KKHIV 361 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcC-----CeeEE
Confidence 5799999999999999999999999999999999999999999999999999998865443222221100 00000
Q ss_pred -CCHHHHHHHHHHHHHH-HHhhcCCChH-HHHhcCCchhHHHHHHHHhhhhhhhcccCCC--CCHHHHH
Q 005173 427 -LPHGLKQSVRKYDQYR-WVATRGVDEE-SILDGLPTDLRRDIKRHLCLDLVRQVPLFDL--MDDRMLV 490 (710)
Q Consensus 427 -lp~~L~~rVr~y~~y~-w~~~~g~de~-~ll~~Lp~~Lr~~I~~~l~~~~L~~vplF~~--ls~~~l~ 490 (710)
-..-..+.|-.|++-- ......+|-| -+|...||+|--| .++.....++.+|++ |++-.+.
T Consensus 362 vcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl~ 427 (1103)
T KOG1420|consen 362 VCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDLA 427 (1103)
T ss_pred EecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhhh
Confidence 0111233444444432 2233446644 5678899998655 345566778889975 4554433
No 29
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.45 E-value=1.7e-08 Score=105.23 Aligned_cols=180 Identities=16% Similarity=0.250 Sum_probs=109.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhceeEEcCCCcccCCCeEeeChHHHHHHHhhh-hhHhHhhhcCCHHHHHHHhhcc-CC
Q 005173 125 EIILTVIRSLADAFYFVRIFIRFRTAFVAPSSRVLGRGDLVIDPSKISSRYLRK-DFWLDIMAAQPIPQLLLWAVIP-YL 202 (710)
Q Consensus 125 ~~~~~~i~~~~D~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~rYl~~-~F~iDlls~lPl~~i~~~~~~~-~~ 202 (710)
...+..+++.+-++|..+.+++...| |+ ..|++++ -=++|+++++|+.+- .+.+ +.
T Consensus 226 ~~aFFclDTACVmIFT~EYlLRL~aA---Ps----------------R~rF~RSvMSiIDVvAIlPYYig---Lv~t~N~ 283 (632)
T KOG4390|consen 226 PVAFFCLDTACVMIFTGEYLLRLFAA---PS----------------RYRFLRSVMSIIDVVAILPYYIG---LVMTDNE 283 (632)
T ss_pred ceeeEEecceeEEEeeHHHHHHHHcC---ch----------------HHHHHHHHHHHHHHhhhhhhheE---EEecCCc
Confidence 45567778888888888888887653 43 3577888 668999999998432 2333 33
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHHHhHhhhHHHH--HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 005173 203 KGSSMVSTKNVIRLIIIFQYLLRLYLTFPLSYQI--IKASGVLLETSWAGAAYNLMLYMLASHVLGACWYLLSVERQEEC 280 (710)
Q Consensus 203 ~~~~~~~~~~~Lrl~~l~qyl~Rl~ri~~l~~~i--~~~~~~~~~t~~~~~~~~lll~~l~~H~~ac~wyll~~~~~~~c 280 (710)
+.+..+.+++++|. +||++..+.- -+..|+-.++-..-.-+.++....+.-++|.+.|+.--
T Consensus 284 DVSGaFVTLRVFRV----------FRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEK------ 347 (632)
T KOG4390|consen 284 DVSGAFVTLRVFRV----------FRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEK------ 347 (632)
T ss_pred cccceeEEEEeeee----------eeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc------
Confidence 44555555555543 3333222110 11223322221111223333333455566666665210
Q ss_pred HHHhhhccCCCCcccccccCCCCCCCcccccccccccccCCCCCCCCcccchhhhhhhcccCCchHHHHHHHHHHHHHHh
Q 005173 281 WRKVCRSHHLECNIGFFDCHLVKDSSRVNLFQMSNISSLCDPKSNYYQFGIFADAVILGVTASRFLDKYFYCLWWGLRNL 360 (710)
Q Consensus 281 w~~~c~~~~~~c~~~~l~~~~~~~~~~~sW~~~~~l~~~c~~~~~~~~~gi~~~al~~~i~~~~~~~~Y~~slyw~l~tl 360 (710)
+ . +.+-+...-.+||+.+.||
T Consensus 348 ----------g-------------~------------------------------------~at~FTsIPaaFWYTIVTm 368 (632)
T KOG4390|consen 348 ----------G-------------S------------------------------------SATKFTSIPAAFWYTIVTM 368 (632)
T ss_pred ----------c-------------c------------------------------------cccccccCcHhHhhheeee
Confidence 0 0 1111233346899999999
Q ss_pred ccccCCCccccchhHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 005173 361 SSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLI----GNMQTYL 401 (710)
Q Consensus 361 stvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~li----g~~~~~l 401 (710)
||+||||..|.+...++|..++.+.|+++.|+-+ .|++.+-
T Consensus 369 TTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 369 TTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred eeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence 9999999999999999999999999999888644 5555544
No 30
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.93 E-value=1.3e-05 Score=92.10 Aligned_cols=113 Identities=21% Similarity=0.321 Sum_probs=96.0
Q ss_pred HHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhccCCCCCCCC
Q 005173 488 MLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVIL 566 (710)
Q Consensus 488 ~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~ 566 (710)
++..+-..+.-....+|+.++++||..+++|+|+.|.++..... +|+..+ ++.++.||.+|+...+ ..+|
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~l---t~~~---- 570 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEML---TKQP---- 570 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHHh---hcCC----
Confidence 45566667788899999999999999999999999999988654 454434 7999999999998764 2233
Q ss_pred CCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005173 567 PSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFRCH 611 (710)
Q Consensus 567 p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r~~ 611 (710)
+..|+.|+.++++..|+.--|..+..+||.+..+..+..++.+
T Consensus 571 --R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 571 --RATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred --ccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999888888777766
No 31
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.88 E-value=0.00019 Score=79.24 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005173 348 KYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYL 401 (710)
Q Consensus 348 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l 401 (710)
.+..|+||++.|+||+||||+.|.+...++|+++++++|+.+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999998887754
No 32
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.83 E-value=0.004 Score=67.77 Aligned_cols=91 Identities=19% Similarity=0.247 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhC
Q 005173 346 LDKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRLEEWRIRRTDTEKWMHHR 425 (710)
Q Consensus 346 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 425 (710)
...|..++|....|..++||||+.|.+...+..+++..++|..+-|.+++.++--+ |...--+.+++||-..
T Consensus 285 ~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL--------eLt~aEKhVhNFMmDt 356 (489)
T KOG3684|consen 285 TINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL--------ELTKAEKHVHNFMMDT 356 (489)
T ss_pred HHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999887655 3334445677888888
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 005173 426 QLPHGLKQSVRKYDQYRWV 444 (710)
Q Consensus 426 ~lp~~L~~rVr~y~~y~w~ 444 (710)
+|-+++++-..+=+|..|.
T Consensus 357 qLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 357 QLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888777777777776
No 33
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=97.73 E-value=3.1e-05 Score=64.65 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=35.0
Q ss_pred cccceeeCCCChhHHHHHHHHHHHHHHHHHHhhhhcccc
Q 005173 72 LVEKVILDPRGPIINRWNKIFLVACLVSLFVDPLFFYLP 110 (710)
Q Consensus 72 ~~~~~ii~P~s~~~~~W~~~~li~~~~~~~~~Pl~~~~~ 110 (710)
....+||||.|.|+.+||.+++++++++++++|+.++|-
T Consensus 33 ~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~ 71 (77)
T PF08412_consen 33 SSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFF 71 (77)
T ss_pred cCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEe
Confidence 334689999999999999999999999999999998763
No 34
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.66 E-value=0.00028 Score=76.08 Aligned_cols=59 Identities=12% Similarity=0.240 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhccccCCC--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005173 347 DKYFYCLWWGLRNLSSLGQNL--FTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTT 405 (710)
Q Consensus 347 ~~Y~~slyw~l~tlstvG~gd--~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~ 405 (710)
..+..+|++++.|++|+|||. ++|....-.+++++-+++|+++.|+++|.+-+=++.-.
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~ 143 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPK 143 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 468889999999999999998 67888888888999999999999999999887776443
No 35
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.26 E-value=0.0011 Score=76.78 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=87.8
Q ss_pred HHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCc
Q 005173 491 AVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSS 569 (710)
Q Consensus 491 ~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s 569 (710)
.++.+++...+..|++|++.|++.+.+|.+.+|.+.++..+ +|++.. +....+|+-|.....+. +-.|..-.+.+
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~l--lk~V~~G~~~tSllSiL--d~l~~~ps~~~ 185 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYL--LKTVPPGGSFTSLLSIL--DSLPGFPSLSR 185 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceee--EeeccCCCchHhHHHHH--HhccCCCcccc
Confidence 34477888889999999999999999999999999998766 466655 78899998887663222 22222222447
Q ss_pred ccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHH
Q 005173 570 TRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRH 606 (710)
Q Consensus 570 ~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~ 606 (710)
+..++|.++|.+..++.+.|..+...||+-..+..|-
T Consensus 186 ~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQv 222 (1158)
T KOG2968|consen 186 TIAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQV 222 (1158)
T ss_pred eeeeeeecCceEEEeccchhhhhhccChHHHHHHHHH
Confidence 7889999999999999999999999999765555443
No 36
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.00083 Score=74.69 Aligned_cols=61 Identities=16% Similarity=0.341 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 005173 348 KYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRL 408 (710)
Q Consensus 348 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~ 408 (710)
.+..++|++.+++||+|||+++|.+...++|+|+..++|+-++..++++++..+...-.+.
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~ 175 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKL 175 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999987654433
No 37
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.93 E-value=0.023 Score=56.73 Aligned_cols=96 Identities=5% Similarity=-0.095 Sum_probs=72.2
Q ss_pred HHHHHHhhceeEEeCCCCee-eecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCC
Q 005173 488 MLVAVCERLKPRLCTPGTCP-VREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVIL 566 (710)
Q Consensus 488 ~l~~l~~~l~~~~~~kge~I-~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~ 566 (710)
..+.+....++..+.+|..+ ....+..+.+++|.+|.+.+. ..++ ..+....+...||-... ..+..
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~d~----ll~~t~~aP~IlGl~~~---~~~~~---- 81 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-REEN----VLIGITQAPYIMGLADG---LMKND---- 81 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ecCC----eEEEeccCCeEeecccc---cCCCC----
Confidence 45566677788889999997 444444467999999999995 3333 23678888899997643 22221
Q ss_pred CCcccEEEEcceEEEEEecHHHHHHHHHHhH
Q 005173 567 PSSTRTVKAITEVEAFAFVDEDLKFVASQYR 597 (710)
Q Consensus 567 p~s~~tv~Alt~~ell~L~~edf~~ll~~~p 597 (710)
..+.++|.++|+++.++.+++.++++++.
T Consensus 82 --~~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 82 --IPYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred --ceEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 34789999999999999999999999854
No 38
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.85 E-value=0.048 Score=51.35 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=81.8
Q ss_pred CCCHHHHHHHHhh-ceeEEeCCCCeeeecCC-CCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCC
Q 005173 483 LMDDRMLVAVCER-LKPRLCTPGTCPVREED-PVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDP 560 (710)
Q Consensus 483 ~ls~~~l~~l~~~-l~~~~~~kge~I~~eGd-~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~ 560 (710)
+.+......|+.+ .+.....+|+.-..||. +.+.+-++++|.+++.. +|+- +..+.|.+|........ ..+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~--~g~f----LH~I~p~qFlDSPEW~s-~~~ 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC--DGRF----LHYIYPYQFLDSPEWES-LRP 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE--CCEe----eEeecccccccChhhhc-ccc
Confidence 4678888888887 66778999999988885 45899999999999875 3432 77888888887654321 111
Q ss_pred CCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHH
Q 005173 561 RPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKL 599 (710)
Q Consensus 561 ~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l 599 (710)
. ....-..|+.|.++|..+..+++.+..++.+.|-+
T Consensus 87 s---~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L 122 (153)
T PF04831_consen 87 S---EDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFL 122 (153)
T ss_pred C---CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHH
Confidence 1 11235789999999999999999999999998843
No 39
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.049 Score=57.10 Aligned_cols=58 Identities=16% Similarity=0.291 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhccccCCCccccch-------hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005173 348 KYFYCLWWGLRNLSSLGQNLFTSTFV-------WE-INFAIAIAILGLTLFGLLIGNMQTYLQSTT 405 (710)
Q Consensus 348 ~Y~~slyw~l~tlstvG~gd~~~~~~-------~E-~~f~i~i~i~G~~lfa~lig~~~~~l~~~~ 405 (710)
.|+.|+|+.+.|+||+|+||.++.-. .+ ..++.+.+++|+.+++-+++.+.--+..++
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~ 251 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMN 251 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 48889999999999999999876543 22 346777788898888877766655444433
No 40
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.52 E-value=0.031 Score=63.05 Aligned_cols=114 Identities=15% Similarity=0.251 Sum_probs=88.8
Q ss_pred HHhhhhhhhcccCCCCCHHHHHHHHhhceeEE-eCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCC
Q 005173 469 HLCLDLVRQVPLFDLMDDRMLVAVCERLKPRL-CTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGD 547 (710)
Q Consensus 469 ~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~-~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd 547 (710)
+..+++..+.|-|.+|+-...+++|..|.... -..|.+|+..|+.-+..+.|+.|.|++..++|.+ ..+.-|+
T Consensus 277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mGn 350 (1283)
T KOG3542|consen 277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMGN 350 (1283)
T ss_pred HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeeccc
Confidence 34578888999999999999999999887655 4679999999999999999999999999988875 5677899
Q ss_pred eecchhhhhccCCCCCCCCCCcccEE-EEcceEEEEEecHHHHHHHHHHhH
Q 005173 548 FCGEELLTWALDPRPSVILPSSTRTV-KAITEVEAFAFVDEDLKFVASQYR 597 (710)
Q Consensus 548 ~fGe~~l~~~l~~~~~~~~p~s~~tv-~Alt~~ell~L~~edf~~ll~~~p 597 (710)
-||... .+...+ ..--+ .-+.||+..++...|+-.++.+--
T Consensus 351 SFG~~P-------T~dkqy--m~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 351 SFGAEP-------TPDKQY--MIGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred ccCCCC-------Ccchhh--hhhhhheecccceEEEeehhhHHHHHHHHH
Confidence 999652 110000 00112 236899999999999999887644
No 41
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=95.30 E-value=0.11 Score=55.85 Aligned_cols=60 Identities=12% Similarity=0.283 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhccccCCC--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Q 005173 347 DKYFYCLWWGLRNLSSLGQNL--FTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTV 406 (710)
Q Consensus 347 ~~Y~~slyw~l~tlstvG~gd--~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 406 (710)
..+..||-+++-|=+|+|||- +|..-+.-++..++-+|+|+++-|+++|.+-.=+..-.+
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkK 172 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKK 172 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 345678888999999999996 455567777888888999999999999988766654433
No 42
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.07 E-value=0.83 Score=54.25 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=55.2
Q ss_pred cccccceeeCCCChhHHHHH---------HHHHHHHHHHHHHhhhhccccccccccccccCCCchhhHHHHHHHHHHHHH
Q 005173 70 YELVEKVILDPRGPIINRWN---------KIFLVACLVSLFVDPLFFYLPEAKKNACINVSVPLEIILTVIRSLADAFYF 140 (710)
Q Consensus 70 ~~~~~~~ii~P~s~~~~~W~---------~~~li~~~~~~~~~Pl~~~~~~~~~~~c~~~~~~~~~~~~~i~~~~D~~f~ 140 (710)
...|.+.++.|+++|+..-. .+++++++++.+++-+.- |.+ .......+.+++-+++.-.+|+
T Consensus 1099 r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialer--p~i------~~~s~EriFltlsnyIFtaIfV 1170 (1956)
T KOG2302|consen 1099 RELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALER--PAI------VEGSTERIFLTLSNYIFTAIFV 1170 (1956)
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcc--ccc------ccCcceEEEEEecchHHHHHHH
Confidence 35677899999999987544 445555555655555441 111 1111122344555688889999
Q ss_pred HHHHHhhc-eeEEcCCCcccCCCeEeeChHHHHHHHhhh-hhHhHhh
Q 005173 141 VRIFIRFR-TAFVAPSSRVLGRGDLVIDPSKISSRYLRK-DFWLDIM 185 (710)
Q Consensus 141 ~Di~l~F~-tay~~~~s~~~~~G~lV~d~~~Ia~rYl~~-~F~iDll 185 (710)
+.+.++-. .|.+- || .-|+++ |=.+|.+
T Consensus 1171 ~Em~lKVVALGl~f--------ge---------~aYl~ssWN~LDgf 1200 (1956)
T KOG2302|consen 1171 VEMTLKVVALGLYF--------GE---------QAYLRSSWNVLDGF 1200 (1956)
T ss_pred HHHHHHHHhhhhcc--------ch---------HHHHHHHHHhhhHH
Confidence 99999864 34332 33 468877 7666654
No 43
>PLN03223 Polycystin cation channel protein; Provisional
Probab=94.55 E-value=6.3 Score=49.17 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005173 374 WEINFAIAIAILGLTLFGLLIGNMQTYLQST 404 (710)
Q Consensus 374 ~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~ 404 (710)
+-..|..+++++..++.-++|+.|...++..
T Consensus 1395 GPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1395 GMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777766643
No 44
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=93.12 E-value=0.014 Score=61.03 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHH
Q 005173 346 LDKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLL 393 (710)
Q Consensus 346 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~l 393 (710)
.-++.-|||++.+.+||+|||-.+|.|++.++|+|+..++|+-+--..
T Consensus 78 qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvm 125 (350)
T KOG4404|consen 78 QWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVM 125 (350)
T ss_pred ccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHH
Confidence 346778999999999999999999999999999999999996554333
No 45
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=92.69 E-value=0.15 Score=56.46 Aligned_cols=41 Identities=12% Similarity=0.243 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHH
Q 005173 349 YFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTL 389 (710)
Q Consensus 349 Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~l 389 (710)
.+.++|+.+.|.+||||||-.|..-.-.++.++++-+.+++
T Consensus 218 lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ 258 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGL 258 (1087)
T ss_pred eeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhc
Confidence 35678999999999999999999866665554443333333
No 46
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=89.96 E-value=0.07 Score=59.23 Aligned_cols=48 Identities=15% Similarity=0.298 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhccccCCCccccchhHH--------HHHHHHHHHHHHHHHHHH
Q 005173 347 DKYFYCLWWGLRNLSSLGQNLFTSTFVWEI--------NFAIAIAILGLTLFGLLI 394 (710)
Q Consensus 347 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~--------~f~i~i~i~G~~lfa~li 394 (710)
--|+.|+|+++.++||+|+||++|.+.... .+..+..++|+..++.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 568889999999999999999999998766 688888889988888877
No 47
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=88.56 E-value=0.6 Score=53.18 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=80.0
Q ss_pred CchhHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeee
Q 005173 459 PTDLRRDIKRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFF 538 (710)
Q Consensus 459 p~~Lr~~I~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~ 538 (710)
|+.|+......--...|.+...|.++-..-+.++|.......++...++++.|+.+...|++++|.|-+. |
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~----g----- 93 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE----G----- 93 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee----c-----
Confidence 4555544444434456778889999999999999999999999999999999999999999999998663 2
Q ss_pred eeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecH
Q 005173 539 NSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVD 586 (710)
Q Consensus 539 ~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~ 586 (710)
..+-|-..||.-.- . .++.++-.++++|..+++.
T Consensus 94 --qi~mp~~~fgkr~g------~------~r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 94 --QIYMPYGCFGKRTG------Q------NRTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred --ceecCccccccccc------c------ccccceeeecccceeeeec
Confidence 23445556676421 1 2778888899999998853
No 48
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.96 E-value=38 Score=40.34 Aligned_cols=74 Identities=20% Similarity=0.403 Sum_probs=54.9
Q ss_pred ccccCCCccccc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHhCCCCHHHHH
Q 005173 361 SSLGQNLFTSTF------VWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRL-EEWRIRRTDTEKWMHHRQLPHGLKQ 433 (710)
Q Consensus 361 stvG~gd~~~~~------~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~-~e~~~k~~~~~~~m~~~~lp~~L~~ 433 (710)
.|+|+||..... ..-++|.+++.+.-+.++=++|+-|+.......... ++|+.+...+- -|-.|.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~i-L~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAATI-LMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHH-HHHHhcCCHHHHH
Confidence 478999875433 446777788888888888899999998777766555 77876655543 4567899999988
Q ss_pred HH
Q 005173 434 SV 435 (710)
Q Consensus 434 rV 435 (710)
|-
T Consensus 680 ~~ 681 (782)
T KOG3676|consen 680 RF 681 (782)
T ss_pred HH
Confidence 73
No 49
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=82.07 E-value=23 Score=46.06 Aligned_cols=114 Identities=15% Similarity=0.229 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhceeEEcCCCcccCCCeEeeChHHHHHHHhhh-hhHhHhhhcCCHHHHHHHhhccCCC
Q 005173 125 EIILTVIRSLADAFYFVRIFIRFRTAFVAPSSRVLGRGDLVIDPSKISSRYLRK-DFWLDIMAAQPIPQLLLWAVIPYLK 203 (710)
Q Consensus 125 ~~~~~~i~~~~D~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~rYl~~-~F~iDlls~lPl~~i~~~~~~~~~~ 203 (710)
...+...+.+.-.+|.+.|+++.-. | |-.. |++. |.++|++-+.-.-.-.++. . .
T Consensus 871 ~~~L~y~D~~Ft~iFt~Em~lK~ia-~----------Gf~~---------y~rn~w~~lDf~Vv~vslisl~~~--~--~ 926 (1592)
T KOG2301|consen 871 NGILEYADYIFTYIFTFEMLLKWIA-Y----------GFFF---------YFRNAWNWLDFVVVIVSLISLIAS--L--K 926 (1592)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-h----------HHHH---------HHhhHHhhhhHHHhhhHHHHHHHh--h--h
Confidence 4567778888888999999998532 1 3211 9988 9999998665432222211 0 1
Q ss_pred CCchhhhhhHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005173 204 GSSMVSTKNVIRLIIIFQYLLRLYLTFPLSYQIIKASGVLLETSWAGAAYNLMLYMLASHVLGACWYLLSV 274 (710)
Q Consensus 204 ~~~~~~~~~~Lrl~~l~qyl~Rl~ri~~l~~~i~~~~~~~~~t~~~~~~~~lll~~l~~H~~ac~wyll~~ 274 (710)
...+.+.||.+ |.+|.++..+.....-.++ .+..+++..++..+++.+++=.++-.+|+
T Consensus 927 ---~~~~ik~lr~l-------RaLRPLR~i~r~~~mr~Vv--~~l~~a~~~I~nv~lV~li~~fiFai~gv 985 (1592)
T KOG2301|consen 927 ---ILSLIKSLRIL-------RALRPLRALSRFPGMRVVV--LALFGGLPEIFNVLLVCLIFWFIFAIMGV 985 (1592)
T ss_pred ---hhhHHHHHHHH-------HHHHHHHHHHHccccchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223333322 3333333333222211111 24456666666666666665555555554
No 50
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=73.29 E-value=2.4e+02 Score=34.88 Aligned_cols=58 Identities=14% Similarity=0.287 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccccccccccCCC--chhhHHHHHHHHHHHHHHHHHHhhc-eeEEc
Q 005173 88 WNKIFLVACLVSLFVDPLFFYLPEAKKNACINVSVP--LEIILTVIRSLADAFYFVRIFIRFR-TAFVA 153 (710)
Q Consensus 88 W~~~~li~~~~~~~~~Pl~~~~~~~~~~~c~~~~~~--~~~~~~~i~~~~D~~f~~Di~l~F~-tay~~ 153 (710)
++.+-+++++++++..-+| +.|-+++-. --..+..++-++-+||.++|+++.. .|.+.
T Consensus 81 fe~vsmlvillncvtlgmf--------rpced~~c~s~rc~ilqafddfifaffavemv~kmvalgifg 141 (1956)
T KOG2302|consen 81 FECVSMLVILLNCVTLGMF--------RPCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKMVALGIFG 141 (1956)
T ss_pred HHHHHHHHHHHhhhhhccc--------ccchhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4666677777777765544 234443321 1346888999999999999999976 34443
No 51
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=71.35 E-value=50 Score=39.54 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=34.5
Q ss_pred hcCCchhHHHHHHHHhhhhhh-----hcccCCCCCHHHHHHHHhhce
Q 005173 456 DGLPTDLRRDIKRHLCLDLVR-----QVPLFDLMDDRMLVAVCERLK 497 (710)
Q Consensus 456 ~~Lp~~Lr~~I~~~l~~~~L~-----~vplF~~ls~~~l~~l~~~l~ 497 (710)
++||++||+.|..+.+..... +-.+++++|++....|+.++-
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~ 417 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLC 417 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHh
Confidence 479999999999998876644 457888999999998888763
No 52
>COG4709 Predicted membrane protein [Function unknown]
Probab=70.88 E-value=17 Score=35.70 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=52.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--hcCCChHHHHhcC--CchhHHHHHHHHhhhhhhhcccCCCCCH
Q 005173 415 RTDTEKWMHHRQLPHGLKQSVRKYDQYRWVA--TRGVDEESILDGL--PTDLRRDIKRHLCLDLVRQVPLFDLMDD 486 (710)
Q Consensus 415 ~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~--~~g~de~~ll~~L--p~~Lr~~I~~~l~~~~L~~vplF~~ls~ 486 (710)
++++++|+ +.+|++.+..+..||+-.+.+ -.|.+|+++..+| |+++-+|+....-.+....-|-+.+.+.
T Consensus 7 L~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ 80 (195)
T COG4709 7 LNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRR 80 (195)
T ss_pred HHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHH
Confidence 56778888 489999999999888866663 3788999999987 6677777777766666555555555443
No 53
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=68.22 E-value=8.1 Score=30.96 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=33.1
Q ss_pred EEeCCCCeeeecCCCCC-eEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 499 RLCTPGTCPVREEDPVN-EMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 499 ~~~~kge~I~~eGd~~~-~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
..++||+..-..-.+.. ++++|++|.+.+. .++. ...+++||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~~------~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDGE------RVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETTE------EEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-EccE------EeEccCCEEEE
Confidence 45778887666555666 9999999999887 3433 36789999763
No 54
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=66.93 E-value=3.6e+02 Score=34.47 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=34.5
Q ss_pred HHHHHHHhhhhhHhHhhhcCCHHHHHHHhhccC--CCCCchhhhhhHHHHHHHHHHHHHHHhHhhhHHHHHHh
Q 005173 169 SKISSRYLRKDFWLDIMAAQPIPQLLLWAVIPY--LKGSSMVSTKNVIRLIIIFQYLLRLYLTFPLSYQIIKA 239 (710)
Q Consensus 169 ~~Ia~rYl~~~F~iDlls~lPl~~i~~~~~~~~--~~~~~~~~~~~~Lrl~~l~qyl~Rl~ri~~l~~~i~~~ 239 (710)
++++--+-.-|+.+|+++++=|..-+..-..|. .....++...+.+- .-.||+-++.+.+.+.-.
T Consensus 853 ~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~~~GRvIl~~d~i~------~t~rLl~~f~V~~~lGPy 919 (1381)
T KOG3614|consen 853 QKVRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSIYSGRVILCFDFIL------FTLRLLHYFTVSKQLGPY 919 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhheeEecCccceecceeeeeehHHH------HHHHHhhheeeccccCch
Confidence 444444445599999999987755444433441 11111111112211 236788888777665443
No 55
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=66.56 E-value=25 Score=34.43 Aligned_cols=55 Identities=24% Similarity=0.453 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--hcCCChHHHHhcC--CchhHHHHHHHH
Q 005173 414 RRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVA--TRGVDEESILDGL--PTDLRRDIKRHL 470 (710)
Q Consensus 414 k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~--~~g~de~~ll~~L--p~~Lr~~I~~~l 470 (710)
=+++++++++ ++|++-++.+.+||+-...+ ..|.+|++++++| |.++-+++....
T Consensus 6 fL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 6 FLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 3677788886 59999999999999877764 4688999999997 666666666543
No 56
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=65.20 E-value=36 Score=31.42 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=43.6
Q ss_pred eeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEc
Q 005173 497 KPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAI 576 (710)
Q Consensus 497 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Al 576 (710)
....++||..+-.--....++++|++|++.+...++|+ ...+.+||.+--.+- ....+++.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~~--------------~~H~~~N~ 98 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDKH--------------DRHYLRAG 98 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECCC--------------CcEEEEcC
Confidence 33567888755332222247999999999886333344 377999998753321 22345555
Q ss_pred ceEEEEEec
Q 005173 577 TEVEAFAFV 585 (710)
Q Consensus 577 t~~ell~L~ 585 (710)
++++++++-
T Consensus 99 e~~~~l~v~ 107 (125)
T PRK13290 99 EDMRLVCVF 107 (125)
T ss_pred CCEEEEEEE
Confidence 888877763
No 57
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=63.14 E-value=3.6e+02 Score=33.13 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCCChHHHHhcCCchhHHHHHHHHh
Q 005173 425 RQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRHLC 471 (710)
Q Consensus 425 ~~lp~~L~~rVr~y~~y~w~~~~g~de~~ll~~Lp~~Lr~~I~~~l~ 471 (710)
.+||+.||..|..+...... ..-.++++++++...++...+.
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~l-----~~~~lF~~~s~~~l~~L~~~~~ 398 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPVV-----EKVYLFKGVSREILLLLVTKMK 398 (823)
T ss_pred HHcCHHHHHHHHHHHHHHHH-----hhCcchhcCCHHHHHHHHHhhh
Confidence 47999999999887754443 2235778888887777766653
No 58
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=63.13 E-value=18 Score=34.76 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=39.9
Q ss_pred CCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHH
Q 005173 513 PVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDED 588 (710)
Q Consensus 513 ~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~ed 588 (710)
..++++++++|.+.+-..++|+.. ...+++||+|=-- .. -..+-++.++|.++.+.+..
T Consensus 47 ~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~flvP--------~g------vpHsP~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 47 PGEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFLLP--------PH------VPHSPQRPAGSIGLVIERKR 105 (159)
T ss_pred CCceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEEeC--------CC------CCcccccCCCcEEEEEEeCC
Confidence 368999999999999877766422 4779999987321 11 22344455777777776553
No 59
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=60.34 E-value=41 Score=26.51 Aligned_cols=51 Identities=8% Similarity=0.111 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHH
Q 005173 373 VWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVR---LEEWRIRRTDTEKWMH 423 (710)
Q Consensus 373 ~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~---~~e~~~k~~~~~~~m~ 423 (710)
.+..++.+.+.++-+++++.+-+-+-.++++.+.. ..++++|++.+-+-+.
T Consensus 3 i~~~Iy~~~Vi~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 3 IGDLIYYILVIILIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 34455555433333333333333455555553332 3368899988877654
No 60
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=59.49 E-value=12 Score=33.50 Aligned_cols=45 Identities=24% Similarity=0.434 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHh----------hcCCChHHHHhcCCchhHHHHHHH
Q 005173 425 RQLPHGLKQSVRKYDQYRWVA----------TRGVDEESILDGLPTDLRRDIKRH 469 (710)
Q Consensus 425 ~~lp~~L~~rVr~y~~y~w~~----------~~g~de~~ll~~Lp~~Lr~~I~~~ 469 (710)
.-||+++|+-|...+.-.-.. ....|...+|..||++||++|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 358999999999988654331 123456799999999999998754
No 61
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=54.75 E-value=32 Score=33.70 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=42.4
Q ss_pred CCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHH
Q 005173 512 DPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDL 589 (710)
Q Consensus 512 d~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf 589 (710)
++.++++++++|.+.+...++|+.. ...+++||+|=- |.. -..+-++.++|..+.+.+..-
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fll--------P~g------vpHsP~r~~~tv~LviE~~r~ 112 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFLL--------PPH------VPHSPQREAGSIGLVIERKRP 112 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEEe--------CCC------CCcCCccCCCeEEEEEEeCCC
Confidence 5678999999999998887766422 467999998732 211 123345568888888876544
No 62
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=54.47 E-value=6.6e+02 Score=33.38 Aligned_cols=102 Identities=18% Similarity=0.299 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhceeEEcCCCcccCCCeEeeChHHHHHHHhhh-hhHhHhhhcCCHHHHHHHhhccCCC
Q 005173 125 EIILTVIRSLADAFYFVRIFIRFRTAFVAPSSRVLGRGDLVIDPSKISSRYLRK-DFWLDIMAAQPIPQLLLWAVIPYLK 203 (710)
Q Consensus 125 ~~~~~~i~~~~D~~f~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~rYl~~-~F~iDlls~lPl~~i~~~~~~~~~~ 203 (710)
...+++.+.+.-.+|.+++.++.- ..++ +.|.++ |-++|.+-+. +..+ +.. + .
T Consensus 472 ~~~l~~~~~vF~~lF~~Em~~ki~--al~~------------------~~yF~~~~n~fD~~iv~-l~~~--~~~-~--~ 525 (1592)
T KOG2301|consen 472 NYLLYLGNVVFTGLFTVEMILKIY--ALGP------------------RNYFRRGWNIFDLIIVL-LSLL--ELL-L--K 525 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HcCc------------------HHHHhhhcchheEEEEe-hhhH--Hhc-c--c
Confidence 456677777777788888888753 1121 357765 8889988887 4433 221 1 1
Q ss_pred CCchhhhhhHHHHHHHHHHHHHHHhHhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 005173 204 GSSMVSTKNVIRLIIIFQYLLRLYLTFPLSYQIIKASGVLLETSWAGAAYNLMLYMLA 261 (710)
Q Consensus 204 ~~~~~~~~~~Lrl~~l~qyl~Rl~ri~~l~~~i~~~~~~~~~t~~~~~~~~lll~~l~ 261 (710)
......+||..|+++ +.|+.+..+..+.+.+..+- -.+++.+|++++++
T Consensus 526 ---~~~g~svLr~frllR-Ifkl~k~wp~l~~lv~~i~n-----s~~~l~~L~l~l~i 574 (1592)
T KOG2301|consen 526 ---NVYGLSVLRSFRLLR-IFKLIKSWPTLNDLVKSIFN-----SGKALGNLVLFLFI 574 (1592)
T ss_pred ---chHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHhcc-----cHHHHHHHHHHHHH
Confidence 122334444433332 23444444444444433221 23556666655543
No 63
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=48.31 E-value=17 Score=33.67 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005173 346 LDKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQST 404 (710)
Q Consensus 346 ~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~ 404 (710)
......++|..+.++.. +-++..|.....+++.++..++++++.+.--|++.+++...
T Consensus 42 ~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 42 RFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp HHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45677788888777665 33568899999999999999999999999999999998643
No 64
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=43.69 E-value=32 Score=28.45 Aligned_cols=42 Identities=24% Similarity=0.500 Sum_probs=28.4
Q ss_pred eCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 501 CTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 501 ~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
..+|..-..-. .+++.+|++|.+.+... +|. ...+++||.|-
T Consensus 14 ~~pg~~~~~~~--~~E~~~vleG~v~it~~-~G~-----~~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYP--EDEFFYVLEGEVTITDE-DGE-----TVTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEES--SEEEEEEEEEEEEEEET-TTE-----EEEEETTEEEE
T ss_pred ECCceeEeeCC--CCEEEEEEEeEEEEEEC-CCC-----EEEEcCCcEEE
Confidence 34555433322 28899999999998754 444 36789999874
No 65
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=42.73 E-value=1e+02 Score=33.96 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005173 345 FLDKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTT 405 (710)
Q Consensus 345 ~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~ 405 (710)
..--|+-+|-+++..+.+++-++....-..-..+++++.++++++|.+.|.++...+|-.+
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ 157 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSN 157 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 3456777777888888777766653222333888999999999999999999999886443
No 66
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=38.03 E-value=1e+02 Score=28.86 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=37.4
Q ss_pred hceeEEeCCCCeeeecCCC-CCeEEEEEeeEEEEEEecC-CceeeeeeEEeCCCCeecc
Q 005173 495 RLKPRLCTPGTCPVREEDP-VNEMLFIVRGHLDSYTTGG-GRTGFFNSCRIGPGDFCGE 551 (710)
Q Consensus 495 ~l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fGe 551 (710)
.+....+.+|...-..-.+ ..++++|++|...+...+. +++.. ...+.+||.+--
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~--~~~l~~GD~~~i 87 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVY--DARLREGDVFVV 87 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEE--EEEecCCCEEEE
Confidence 3445567888876544433 5789999999999886543 33333 577999997743
No 67
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=36.73 E-value=91 Score=28.50 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=39.6
Q ss_pred ceeEEeCCCCeeeecCCC-CCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecch
Q 005173 496 LKPRLCTPGTCPVREEDP-VNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEE 552 (710)
Q Consensus 496 l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 552 (710)
.....+.||..+-.--.+ .+...+|++|.+++... |. ...+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~-----~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GE-----KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CC-----ceEecCCCEEEEC
Confidence 345668999998877776 77999999999998765 43 4678999998764
No 68
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=36.45 E-value=2.7e+02 Score=27.68 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=37.5
Q ss_pred cCCchhHHHHHHHHhhhhhhhcccCC-CCCHHHHHHHHhhceeEE--eCCCCeeeecCCCCC
Q 005173 457 GLPTDLRRDIKRHLCLDLVRQVPLFD-LMDDRMLVAVCERLKPRL--CTPGTCPVREEDPVN 515 (710)
Q Consensus 457 ~Lp~~Lr~~I~~~l~~~~L~~vplF~-~ls~~~l~~l~~~l~~~~--~~kge~I~~eGd~~~ 515 (710)
++|.. ...+...+...+++---.|. ..++...+.......+.. +.+|+.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 34444 33333344344333222232 456777888889999988 999999999999875
No 69
>PHA03029 hypothetical protein; Provisional
Probab=34.62 E-value=1.6e+02 Score=24.38 Aligned_cols=37 Identities=27% Similarity=0.171 Sum_probs=29.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 005173 372 FVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRL 408 (710)
Q Consensus 372 ~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~ 408 (710)
++.|.+|-++..++=+++.--+||.+-.++-+.++-.
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~r 38 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIR 38 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999998888888888888999988887765533
No 70
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=34.18 E-value=1.8e+02 Score=21.87 Aligned_cols=42 Identities=12% Similarity=0.168 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005173 377 NFAIAIAILGLTLFGLLIGNMQTYLQSTTVRLEEWRIRRTDT 418 (710)
Q Consensus 377 ~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~ 418 (710)
.++.+..+..++....+...++.+-.....+.++++..-+++
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666777777777777777777766654
No 71
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=34.11 E-value=59 Score=29.10 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhh---------cCCC----hHHHHhcCCchhHHHHHHHHhhh
Q 005173 426 QLPHGLKQSVRKYDQYRWVAT---------RGVD----EESILDGLPTDLRRDIKRHLCLD 473 (710)
Q Consensus 426 ~lp~~L~~rVr~y~~y~w~~~---------~g~d----e~~ll~~Lp~~Lr~~I~~~l~~~ 473 (710)
-||+++|..|..-+...-... .+-. ..++|..||++||.+|..+....
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 489999999855444322110 0000 15899999999999998776544
No 72
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=31.19 E-value=54 Score=37.71 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCC
Q 005173 351 YCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRLEEWRIRRTDTEKWMHHRQ 426 (710)
Q Consensus 351 ~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~ 426 (710)
.|+|+++.....-| -|+.|.....++..-++-++-+++.+---+|++..|. .|.|..-+..++...++.+
T Consensus 598 NsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT-----vErMvsPIESaEDLAkQte 667 (897)
T KOG1054|consen 598 NSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT-----VERMVSPIESAEDLAKQTE 667 (897)
T ss_pred HHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh-----HHhhcCcchhHHHHhhcce
Confidence 58999999998766 3999999999999988888888887777788888773 3334434444444444443
No 73
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=30.88 E-value=1e+03 Score=28.71 Aligned_cols=46 Identities=28% Similarity=0.383 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHH
Q 005173 372 FVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVR-LEEWRIRRTD 417 (710)
Q Consensus 372 ~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~-~~e~~~k~~~ 417 (710)
..+-.+|.++..+.-+++.=++|+-|....+..... .++|+-.+-.
T Consensus 586 ~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~wk~~r~~ 632 (743)
T TIGR00870 586 FVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEWKFQRAK 632 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 356677777888888888888888888887765443 5566544443
No 74
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=30.63 E-value=1.4e+02 Score=25.49 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=43.6
Q ss_pred hceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEE
Q 005173 495 RLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVK 574 (710)
Q Consensus 495 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~ 574 (710)
......+.||..+-.-..+..+..||++|.+.- ++ ..+.+||++=... .+..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~--------~~~~~G~~~~~p~--------------g~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GD--------GRYGAGDWLRLPP--------------GSSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TT--------CEEETTEEEEE-T--------------TEEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CC--------ccCCCCeEEEeCC--------------CCccccC
Confidence 455667889988877777778888999999862 22 2358888764431 1556788
Q ss_pred EcceEEEEE
Q 005173 575 AITEVEAFA 583 (710)
Q Consensus 575 Alt~~ell~ 583 (710)
+.++|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 889998875
No 75
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=30.31 E-value=5.6e+02 Score=31.17 Aligned_cols=75 Identities=27% Similarity=0.445 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhccccCCCcc-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHH
Q 005173 348 KYFYCLWWGLRNLSSLGQNLFT-----STFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTT-VRLEEWRIRRTDTEKW 421 (710)
Q Consensus 348 ~Y~~slyw~l~tlstvG~gd~~-----~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~-~~~~e~~~k~~~~~~~ 421 (710)
.=..+++|++-.++-++-..+. ..+.++.+|.+--++.=+++.-++|+-|.+-.|... ....|| |-..++-|
T Consensus 553 eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEW--KFARAKLw 630 (822)
T KOG3609|consen 553 ESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEW--KFARAKLW 630 (822)
T ss_pred HHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHH--HHHHHHHH
Confidence 3456789998777655443332 334555555555555555555556655555555432 222333 34445556
Q ss_pred HHh
Q 005173 422 MHH 424 (710)
Q Consensus 422 m~~ 424 (710)
|+.
T Consensus 631 ~sy 633 (822)
T KOG3609|consen 631 MSY 633 (822)
T ss_pred HHH
Confidence 654
No 76
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=29.46 E-value=1.5e+02 Score=28.09 Aligned_cols=45 Identities=18% Similarity=0.426 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-------------cHHHHHHHHHHHHHHHHHHh
Q 005173 380 IAIAILGLTLFGLLIGNMQTYLQST-------------TVRLEEWRIRRTDTEKWMHH 424 (710)
Q Consensus 380 i~i~i~G~~lfa~lig~~~~~l~~~-------------~~~~~e~~~k~~~~~~~m~~ 424 (710)
+++.++|+.|||++++-+.+.-... ....++|+.+++...+.++.
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k~ 67 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYKQ 67 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHHH
Confidence 6788999999999998764322111 24678899999988866653
No 77
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=28.80 E-value=1.5e+02 Score=34.49 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005173 349 YFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQ 402 (710)
Q Consensus 349 Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~ 402 (710)
.-.++|++-..|..-|-|.-+|....-+++.++++=+.+++-|---+|++..|-
T Consensus 614 lssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 614 LSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred hhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 345677666666666777889999889999999888888888888888887763
No 78
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=27.87 E-value=1.4e+02 Score=27.36 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=34.9
Q ss_pred hhceeEEeCCCCee-eecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCee
Q 005173 494 ERLKPRLCTPGTCP-VREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFC 549 (710)
Q Consensus 494 ~~l~~~~~~kge~I-~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 549 (710)
.......+++|+-+ .+--...++.|+|++|...+... ++ ...+++||.+
T Consensus 36 ~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~ 85 (127)
T COG0662 36 YSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSV 85 (127)
T ss_pred EEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEE
Confidence 34556667888775 44444479999999999988754 33 3567888876
No 79
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=27.46 E-value=47 Score=26.20 Aligned_cols=18 Identities=28% Similarity=0.676 Sum_probs=15.5
Q ss_pred HHHhcCCchhHHHHHHHH
Q 005173 453 SILDGLPTDLRRDIKRHL 470 (710)
Q Consensus 453 ~ll~~Lp~~Lr~~I~~~l 470 (710)
+++++||.+|++++...+
T Consensus 6 elfqkLPDdLKrEvldY~ 23 (65)
T COG5559 6 ELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHCcHHHHHHHHHHH
Confidence 688999999999987664
No 80
>PRK09108 type III secretion system protein HrcU; Validated
Probab=24.84 E-value=2.1e+02 Score=31.37 Aligned_cols=71 Identities=7% Similarity=0.110 Sum_probs=49.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005173 369 TSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRLEEWRIRRTDTEKWMHHRQLPHGLKQSVRKYD 439 (710)
Q Consensus 369 ~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~ 439 (710)
.+......++.++..++..++.++++-.+..+.-+...-.++++-...++++-+|+..-+|+++.|+|+--
T Consensus 173 ~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq~~ 243 (353)
T PRK09108 173 SPPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKRLA 243 (353)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 33444555666677777777777766666666655555555566666788999999999999999888643
No 81
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=24.49 E-value=1.3e+02 Score=21.04 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhCCCCH-----HHHHHHHHHH
Q 005173 414 RRTDTEKWMHHRQLPH-----GLKQSVRKYD 439 (710)
Q Consensus 414 k~~~~~~~m~~~~lp~-----~L~~rVr~y~ 439 (710)
+..++.++++.++||. +|.+|+..|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 4567889999999995 7888888874
No 82
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=24.12 E-value=2.2e+02 Score=31.43 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=34.0
Q ss_pred eEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecC-CceeeeeeEEeCCCCeec
Q 005173 498 PRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGG-GRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 498 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~-g~~~~~~~~~l~~Gd~fG 550 (710)
...+.+|...-.--....++.+|++|.+++...+. |+. + ...+++||.+-
T Consensus 71 ~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~-~--~~~L~~GD~~~ 121 (367)
T TIGR03404 71 NMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRN-Y--IDDVGAGDLWY 121 (367)
T ss_pred EEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcE-E--EeEECCCCEEE
Confidence 34567777653322345689999999999987653 443 2 34799999874
No 83
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.79 E-value=37 Score=31.49 Aligned_cols=12 Identities=50% Similarity=0.672 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCC
Q 005173 696 SLQKPNEPDFTV 707 (710)
Q Consensus 696 ~~~~~~~~~~~~ 707 (710)
.--|||||||+-
T Consensus 61 L~i~pPEPd~~~ 72 (165)
T COG4016 61 LDIKPPEPDFNY 72 (165)
T ss_pred hCCCCCCCCcch
Confidence 457899999974
No 84
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=22.97 E-value=1e+03 Score=29.38 Aligned_cols=116 Identities=13% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCCCcccccccCCCCCCCcccccccccccccCC----CCCCCCccc
Q 005173 255 LMLYMLASHVLGACWYLLSVERQEECWRKVCRSHHLECNIGFFDCHLVKDSSRVNLFQMSNISSLCD----PKSNYYQFG 330 (710)
Q Consensus 255 lll~~l~~H~~ac~wyll~~~~~~~cw~~~c~~~~~~c~~~~l~~~~~~~~~~~sW~~~~~l~~~c~----~~~~~~~~g 330 (710)
+++|+.+.|+.|-.-++ -.|++...++..-. |.+..|.+|
T Consensus 568 VmmFVm~livaai~vFl------------------------------------FEy~SPvgyn~~l~~gkkpggp~Ftig 611 (1258)
T KOG1053|consen 568 VMMFVMCLIVAAITVFL------------------------------------FEYFSPVGYNRNLANGKKPGGPSFTIG 611 (1258)
T ss_pred HHHHHHHHHHHHHHHHH------------------------------------HhhcCcccccccccCCCCCCCcceehh
Q ss_pred chhhhhhhcccCCchHHHHHHHHH--HHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Q 005173 331 IFADAVILGVTASRFLDKYFYCLW--WGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTT--- 405 (710)
Q Consensus 331 i~~~al~~~i~~~~~~~~Y~~sly--w~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~--- 405 (710)
.++| ||+.--.||- -..|....-++...+++++++++.|.--+|++..+-.-.
T Consensus 612 --------------------kaiwllwaLvFnnsVp--v~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE~~~d 669 (1258)
T KOG1053|consen 612 --------------------KAIWLLWALVFNNSVP--VENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYYD 669 (1258)
T ss_pred --------------------hHHHHHHHHHhCCCcC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q ss_pred ----------------------------HHHHHHHHHHHHHHHHHHhCCCC
Q 005173 406 ----------------------------VRLEEWRIRRTDTEKWMHHRQLP 428 (710)
Q Consensus 406 ----------------------------~~~~e~~~k~~~~~~~m~~~~lp 428 (710)
+..+..|....++.+||++.+-|
T Consensus 670 ~vSGlsD~KfqrP~dq~PpFRFGTVpngSTE~niR~Nyp~MHeYM~kyNq~ 720 (1258)
T KOG1053|consen 670 TVSGLSDPKFQRPHDQYPPFRFGTVPNGSTERNIRSNYPEMHEYMVKYNQP 720 (1258)
T ss_pred hccccCcccccCccccCCCcccccCCCCchhhhHHhccHHHHHHHHHhccC
No 85
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=22.02 E-value=3.6e+02 Score=26.81 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=31.9
Q ss_pred eEEeCCCCee---------eecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 498 PRLCTPGTCP---------VREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 498 ~~~~~kge~I---------~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
...+.||... +.+.....++|+|++|...+...+...+. ....+.+||.+-
T Consensus 72 ~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~--~~~~v~pGd~v~ 131 (191)
T PRK04190 72 TTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEA--RWIEMEPGTVVY 131 (191)
T ss_pred EEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcE--EEEEECCCCEEE
Confidence 3446666642 23333346999999999988765432121 146789999763
No 86
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=21.19 E-value=2.6e+02 Score=30.84 Aligned_cols=51 Identities=16% Similarity=0.215 Sum_probs=34.5
Q ss_pred ceeEEeCCCCeeeecC-CCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCee
Q 005173 496 LKPRLCTPGTCPVREE-DPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFC 549 (710)
Q Consensus 496 l~~~~~~kge~I~~eG-d~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~f 549 (710)
+....+.||...-.-= ...+++++|++|.+++...+ +|+.. ...+++||.+
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~---~~~l~~GD~~ 299 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNAR---TFDYQAGDVG 299 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEE---EEEECCCCEE
Confidence 4556678887664332 33679999999999987644 23222 3669999975
No 87
>PRK08156 type III secretion system protein SpaS; Validated
Probab=21.07 E-value=2.9e+02 Score=30.48 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005173 373 VWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRLEEWRIRRTDTEKWMHHRQLPHGLKQSVRKY 438 (710)
Q Consensus 373 ~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y 438 (710)
....+..++..++..++.++++-.+..+.-+...-.++++-..+++++-+|+..-+|+++.|+|+-
T Consensus 170 ~~~~~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R~~ 235 (361)
T PRK08156 170 LIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRREA 235 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 334444444445555555555555555544444444445555678888889999999999988763
No 88
>PRK14662 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=20.07 E-value=83 Score=28.80 Aligned_cols=12 Identities=42% Similarity=0.396 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHH
Q 005173 667 QFTSYAAKLAAS 678 (710)
Q Consensus 667 ~~~~~~~~~~~~ 678 (710)
|+..+|.|||++
T Consensus 45 ~~~~lAgrfAaK 56 (120)
T PRK14662 45 PAPSLAARFAAK 56 (120)
T ss_pred cchhhhhHhHHH
Confidence 367788888874
Done!