Query 005173
Match_columns 710
No_of_seqs 543 out of 3015
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 17:36:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 1.1E-32 3.7E-37 299.2 17.7 341 78-607 3-345 (355)
2 3ukn_A Novel protein similar t 100.0 1E-31 3.5E-36 269.7 18.0 206 398-617 1-206 (212)
3 2ptm_A Hyperpolarization-activ 100.0 1.8E-30 6.1E-35 257.8 24.3 191 403-608 2-192 (198)
4 3bpz_A Potassium/sodium hyperp 100.0 2.5E-30 8.6E-35 257.6 21.1 189 402-606 2-190 (202)
5 1orq_C Potassium channel; volt 99.9 1.5E-20 5.2E-25 190.3 19.7 211 87-403 9-220 (223)
6 4f8a_A Potassium voltage-gated 99.8 6.1E-19 2.1E-23 167.4 17.4 143 452-607 6-148 (160)
7 3gyd_A CNMP-BD protein, cyclic 99.7 6.4E-17 2.2E-21 158.8 18.6 148 451-609 13-165 (187)
8 2r9r_B Paddle chimera voltage 99.7 3.2E-17 1.1E-21 185.3 18.2 289 79-470 174-488 (514)
9 3dn7_A Cyclic nucleotide bindi 99.7 1.1E-16 3.8E-21 157.1 17.9 151 471-647 5-156 (194)
10 3ocp_A PRKG1 protein; serine/t 99.7 4.4E-17 1.5E-21 151.3 14.0 131 457-602 7-137 (139)
11 3mdp_A Cyclic nucleotide-bindi 99.7 9.3E-17 3.2E-21 148.9 14.7 130 472-612 5-138 (142)
12 3idb_B CAMP-dependent protein 99.7 9.3E-17 3.2E-21 153.1 12.6 130 462-602 27-156 (161)
13 1wgp_A Probable cyclic nucleot 99.7 1.9E-17 6.4E-22 153.1 7.5 130 472-601 5-134 (137)
14 4ev0_A Transcription regulator 99.7 1.8E-15 6.2E-20 150.8 21.0 124 475-609 1-125 (216)
15 2pqq_A Putative transcriptiona 99.7 4.6E-16 1.6E-20 145.3 14.9 123 472-605 4-127 (149)
16 3dv8_A Transcriptional regulat 99.7 3.8E-15 1.3E-19 148.9 20.3 126 473-609 3-131 (220)
17 3e97_A Transcriptional regulat 99.7 3E-15 1E-19 151.1 19.2 127 472-609 5-132 (231)
18 3fx3_A Cyclic nucleotide-bindi 99.7 7.2E-16 2.5E-20 156.2 14.6 128 471-609 9-137 (237)
19 3d0s_A Transcriptional regulat 99.7 1.5E-15 5E-20 152.9 16.5 127 472-609 5-132 (227)
20 2z69_A DNR protein; beta barre 99.6 1.4E-15 5E-20 142.8 15.0 128 472-609 11-139 (154)
21 3iwz_A CAP-like, catabolite ac 99.6 6.1E-15 2.1E-19 148.4 19.2 128 472-609 10-143 (230)
22 1vp6_A CNBD, cyclic-nucleotide 99.6 3E-15 1E-19 138.3 14.0 122 471-609 9-130 (138)
23 3pna_A CAMP-dependent protein 99.6 3.3E-15 1.1E-19 141.3 14.3 119 468-601 33-151 (154)
24 1zyb_A Transcription regulator 99.6 2.3E-15 7.8E-20 152.5 13.0 128 471-608 16-146 (232)
25 2gau_A Transcriptional regulat 99.6 1.2E-14 4E-19 146.7 18.0 123 476-609 13-136 (232)
26 3dkw_A DNR protein; CRP-FNR, H 99.6 4.4E-15 1.5E-19 149.2 14.5 128 472-609 8-136 (227)
27 3shr_A CGMP-dependent protein 99.6 8.8E-15 3E-19 153.8 16.8 141 453-608 19-159 (299)
28 2fmy_A COOA, carbon monoxide o 99.6 9.7E-15 3.3E-19 146.3 15.0 119 473-609 4-122 (220)
29 3ryp_A Catabolite gene activat 99.6 4.1E-14 1.4E-18 140.2 18.0 121 479-609 2-123 (210)
30 2oz6_A Virulence factor regula 99.6 1E-13 3.5E-18 137.1 19.0 119 484-609 1-120 (207)
31 4ava_A Lysine acetyltransferas 99.6 2.3E-14 7.8E-19 153.1 15.3 127 472-611 12-139 (333)
32 2d93_A RAP guanine nucleotide 99.6 3.1E-15 1.1E-19 137.9 7.1 124 459-597 2-127 (134)
33 1ft9_A Carbon monoxide oxidati 99.5 1.7E-14 5.9E-19 144.8 12.2 118 474-609 1-118 (222)
34 3kcc_A Catabolite gene activat 99.5 1.3E-13 4.6E-18 142.1 18.0 118 482-609 55-173 (260)
35 1o5l_A Transcriptional regulat 99.5 5E-14 1.7E-18 140.7 13.4 122 478-609 4-126 (213)
36 2qcs_B CAMP-dependent protein 99.5 1.7E-13 5.9E-18 143.1 17.2 126 470-606 154-281 (291)
37 3shr_A CGMP-dependent protein 99.5 2.9E-14 9.8E-19 149.9 11.1 127 469-606 153-281 (299)
38 2qcs_B CAMP-dependent protein 99.5 1.7E-13 5.7E-18 143.2 16.4 130 465-609 31-160 (291)
39 3of1_A CAMP-dependent protein 99.5 1E-13 3.6E-18 140.5 13.6 118 470-601 122-239 (246)
40 3of1_A CAMP-dependent protein 99.5 9.3E-14 3.2E-18 140.9 12.6 124 471-609 5-128 (246)
41 3tnp_B CAMP-dependent protein 99.5 1.9E-13 6.4E-18 151.1 15.9 129 463-602 135-263 (416)
42 4din_B CAMP-dependent protein 99.5 1.3E-13 4.5E-18 150.5 12.3 128 469-607 244-373 (381)
43 4din_B CAMP-dependent protein 99.5 4.1E-13 1.4E-17 146.6 14.4 132 463-609 120-251 (381)
44 2a9h_A Voltage-gated potassium 99.4 3.5E-13 1.2E-17 127.8 12.0 64 347-410 83-146 (155)
45 3e6c_C CPRK, cyclic nucleotide 99.4 6.3E-13 2.2E-17 135.9 14.9 120 476-609 12-132 (250)
46 1o7f_A CAMP-dependent RAP1 gua 99.4 6.8E-13 2.3E-17 148.4 15.8 153 443-605 11-165 (469)
47 3vou_A ION transport 2 domain 99.4 1E-12 3.4E-17 124.1 14.5 86 349-434 53-148 (148)
48 3tnp_B CAMP-dependent protein 99.4 2.9E-13 9.9E-18 149.5 12.0 124 470-604 264-394 (416)
49 4h33_A LMO2059 protein; bilaye 99.4 2E-13 7E-18 127.0 8.8 94 348-441 43-136 (137)
50 2bgc_A PRFA; bacterial infecti 99.4 8E-12 2.7E-16 126.7 18.9 118 482-609 2-123 (238)
51 3la7_A Global nitrogen regulat 99.4 5.2E-12 1.8E-16 128.7 17.4 115 486-609 30-148 (243)
52 1o7f_A CAMP-dependent RAP1 gua 99.4 1.9E-12 6.3E-17 144.8 13.8 124 467-604 331-456 (469)
53 2ih3_C Voltage-gated potassium 99.3 6E-12 2.1E-16 114.7 11.8 59 347-405 60-118 (122)
54 4f7z_A RAP guanine nucleotide 99.3 1.7E-11 5.8E-16 149.9 16.2 136 453-601 23-161 (999)
55 3cf6_E RAP guanine nucleotide 99.2 2E-11 6.7E-16 142.8 12.6 133 452-599 12-146 (694)
56 3eff_K Voltage-gated potassium 99.2 3.8E-11 1.3E-15 112.0 11.8 90 347-437 39-129 (139)
57 3b02_A Transcriptional regulat 99.2 1.1E-10 3.8E-15 114.5 12.3 92 499-608 2-94 (195)
58 4f7z_A RAP guanine nucleotide 99.1 2E-10 6.9E-15 140.4 15.2 114 469-596 333-448 (999)
59 2zcw_A TTHA1359, transcription 99.1 3.1E-10 1.1E-14 111.8 11.0 96 492-606 1-99 (202)
60 3rvy_A ION transport protein; 99.1 6E-10 2E-14 116.5 13.0 61 346-406 178-244 (285)
61 2q67_A Potassium channel prote 99.0 2.5E-09 8.6E-14 96.0 13.8 62 348-409 49-110 (114)
62 3ouf_A Potassium channel prote 98.9 4.2E-09 1.5E-13 91.7 10.6 55 349-403 33-87 (97)
63 2k1e_A Water soluble analogue 98.9 2.7E-10 9.3E-15 100.5 2.8 59 348-406 40-98 (103)
64 3ldc_A Calcium-gated potassium 98.8 7.7E-09 2.6E-13 87.1 7.9 54 348-401 28-81 (82)
65 3pjs_K KCSA, voltage-gated pot 98.8 2.5E-10 8.4E-15 109.8 -1.8 65 347-411 66-130 (166)
66 1xl4_A Inward rectifier potass 98.7 3.3E-08 1.1E-12 103.7 9.8 57 347-403 81-137 (301)
67 1p7b_A Integral membrane chann 98.6 4.2E-08 1.4E-12 104.1 7.0 58 348-405 96-153 (333)
68 3um7_A Potassium channel subfa 98.6 1.6E-07 5.6E-12 98.2 10.3 56 348-403 115-170 (309)
69 2qks_A KIR3.1-prokaryotic KIR 98.5 3.2E-07 1.1E-11 96.9 10.7 59 348-406 78-136 (321)
70 3sya_A G protein-activated inw 98.4 1.2E-06 4.1E-11 92.7 12.6 59 348-406 91-151 (340)
71 4gx0_A TRKA domain protein; me 98.3 2.2E-06 7.5E-11 98.1 11.7 53 349-401 52-105 (565)
72 3ukm_A Potassium channel subfa 98.2 2.6E-06 8.8E-11 87.8 8.1 55 348-402 93-147 (280)
73 3um7_A Potassium channel subfa 98.2 9E-07 3.1E-11 92.6 4.3 61 348-408 224-290 (309)
74 3spc_A Inward-rectifier K+ cha 98.1 9.5E-06 3.2E-10 86.0 11.1 59 347-405 93-153 (343)
75 3ukm_A Potassium channel subfa 98.0 3.1E-06 1.1E-10 87.2 4.9 56 349-404 202-264 (280)
76 1lnq_A MTHK channels, potassiu 97.8 1.1E-06 3.8E-11 93.7 -2.2 56 349-404 46-101 (336)
77 4dxw_A Navrh, ION transport pr 97.8 0.00076 2.6E-08 67.6 17.9 74 87-189 13-87 (229)
78 2kyh_A KVAP, voltage-gated pot 97.5 0.00036 1.2E-08 65.1 9.9 78 87-193 22-99 (147)
79 1ors_C Potassium channel; volt 97.3 0.0013 4.5E-08 60.1 10.4 78 87-193 7-84 (132)
80 3fjs_A Uncharacterized protein 66.6 25 0.00084 30.1 8.7 68 496-584 38-105 (114)
81 3rns_A Cupin 2 conserved barre 63.2 27 0.00092 34.0 9.2 69 495-584 38-106 (227)
82 2ozj_A Cupin 2, conserved barr 62.3 33 0.0011 28.9 8.7 65 499-584 43-107 (114)
83 2pfw_A Cupin 2, conserved barr 56.2 56 0.0019 27.4 9.1 67 497-584 37-103 (116)
84 2l53_B CAM, voltage-gated sodi 56.1 11 0.00036 25.0 3.1 21 614-634 3-23 (31)
85 3kg2_A Glutamate receptor 2; I 56.0 11 0.00037 44.1 5.7 56 347-403 562-617 (823)
86 2kxw_B Sodium channel protein 55.8 10 0.00035 24.2 2.9 19 615-633 4-22 (27)
87 3lwc_A Uncharacterized protein 54.5 32 0.0011 29.9 7.2 45 498-550 44-88 (119)
88 1yhf_A Hypothetical protein SP 53.6 55 0.0019 27.4 8.5 68 496-584 42-109 (115)
89 1yfu_A 3-hydroxyanthranilate-3 49.4 21 0.00073 33.4 5.3 35 513-550 54-88 (174)
90 1o5u_A Novel thermotoga mariti 46.0 57 0.0019 27.4 7.2 47 496-550 33-79 (101)
91 4e2g_A Cupin 2 conserved barre 44.5 60 0.0021 27.7 7.4 48 496-550 43-90 (126)
92 2bnm_A Epoxidase; oxidoreducta 44.3 83 0.0029 29.3 9.0 49 499-550 122-173 (198)
93 3h8u_A Uncharacterized conserv 41.8 38 0.0013 29.0 5.6 49 496-550 41-90 (125)
94 1zvf_A 3-hydroxyanthranilate 3 40.9 77 0.0027 29.7 7.7 85 487-587 12-114 (176)
95 2q30_A Uncharacterized protein 38.8 1.3E+02 0.0045 24.5 8.5 67 498-584 37-105 (110)
96 1dgw_A Canavalin; duplicated s 38.0 37 0.0013 31.7 5.2 52 496-550 43-94 (178)
97 3d0j_A Uncharacterized protein 36.8 65 0.0022 29.0 6.3 64 509-586 45-109 (140)
98 2gu9_A Tetracenomycin polyketi 35.5 60 0.002 26.8 5.8 47 497-550 24-73 (113)
99 1v70_A Probable antibiotics sy 34.6 70 0.0024 25.7 6.0 47 497-550 31-78 (105)
100 2qnk_A 3-hydroxyanthranilate 3 34.6 90 0.0031 31.5 7.5 60 511-587 48-107 (286)
101 3rns_A Cupin 2 conserved barre 33.9 1.1E+02 0.0036 29.6 8.0 68 496-584 155-223 (227)
102 2fqp_A Hypothetical protein BP 32.9 35 0.0012 28.0 3.7 49 497-550 21-70 (97)
103 3bcw_A Uncharacterized protein 31.7 30 0.001 30.3 3.3 45 500-551 55-99 (123)
104 4b29_A Dimethylsulfoniopropion 31.3 72 0.0025 31.0 6.0 33 512-550 150-182 (217)
105 1fi2_A Oxalate oxidase, germin 31.1 1.1E+02 0.0036 29.0 7.3 53 496-550 74-130 (201)
106 3es1_A Cupin 2, conserved barr 31.1 54 0.0018 30.7 5.0 48 496-549 81-128 (172)
107 1lr5_A Auxin binding protein 1 30.9 66 0.0023 29.1 5.7 54 497-550 44-99 (163)
108 3ibm_A Cupin 2, conserved barr 30.4 83 0.0028 28.9 6.3 48 496-550 58-105 (167)
109 2q1z_B Anti-sigma factor CHRR, 30.1 87 0.003 29.7 6.5 66 494-584 125-192 (195)
110 3d82_A Cupin 2, conserved barr 29.4 93 0.0032 25.0 5.9 51 514-585 50-100 (102)
111 2o1q_A Putative acetyl/propion 28.4 81 0.0028 28.3 5.7 52 495-551 45-96 (145)
112 3es4_A Uncharacterized protein 27.5 44 0.0015 29.2 3.4 45 500-551 48-92 (116)
113 4axo_A EUTQ, ethanolamine util 27.3 1.4E+02 0.0047 27.2 7.0 31 513-550 83-113 (151)
114 2b8m_A Hypothetical protein MJ 26.2 81 0.0028 26.5 5.1 46 499-550 32-77 (117)
115 2i45_A Hypothetical protein; n 25.9 97 0.0033 25.5 5.4 67 502-588 36-102 (107)
116 2vqa_A SLL1358 protein, MNCA; 25.3 1.2E+02 0.004 31.4 7.1 51 497-550 55-107 (361)
117 3bu7_A Gentisate 1,2-dioxygena 24.3 68 0.0023 34.2 4.9 49 497-551 126-174 (394)
118 1j58_A YVRK protein; cupin, de 23.8 1.2E+02 0.0041 31.7 6.9 52 496-550 81-133 (385)
119 4e2q_A Ureidoglycine aminohydr 23.2 1.3E+02 0.0043 30.2 6.4 68 498-585 74-141 (266)
120 3kgz_A Cupin 2 conserved barre 23.0 79 0.0027 28.8 4.5 45 499-550 49-93 (156)
121 3jzv_A Uncharacterized protein 22.9 78 0.0027 29.1 4.5 45 499-550 58-102 (166)
122 2vqa_A SLL1358 protein, MNCA; 22.7 1.6E+02 0.0054 30.3 7.5 52 496-550 236-289 (361)
123 3i7d_A Sugar phosphate isomera 21.8 1.1E+02 0.0037 27.9 5.2 47 497-550 46-94 (163)
124 1sfn_A Conserved hypothetical 21.7 1.3E+02 0.0045 29.4 6.2 51 494-551 165-216 (246)
125 2f4p_A Hypothetical protein TM 21.7 1.5E+02 0.0052 26.3 6.1 48 497-550 51-98 (147)
126 1uij_A Beta subunit of beta co 21.7 84 0.0029 33.7 5.1 54 494-550 49-102 (416)
127 2opk_A Hypothetical protein; p 21.4 96 0.0033 26.2 4.5 34 512-550 51-84 (112)
128 2d40_A Z3393, putative gentisa 21.4 2.7E+02 0.0092 28.9 8.9 72 498-590 272-343 (354)
129 3l2h_A Putative sugar phosphat 21.1 1.1E+02 0.0036 27.6 5.0 46 497-549 49-96 (162)
130 3ota_A Holo-[acyl-carrier-prot 20.7 53 0.0018 29.2 2.7 12 667-678 48-59 (129)
131 4i4a_A Similar to unknown prot 20.6 1.2E+02 0.004 25.8 5.0 79 498-597 38-120 (128)
132 2pyt_A Ethanolamine utilizatio 20.6 1.8E+02 0.0063 25.4 6.4 44 499-551 62-105 (133)
133 2ea7_A 7S globulin-1; beta bar 20.4 92 0.0031 33.6 5.0 54 494-550 61-114 (434)
134 1sfn_A Conserved hypothetical 20.3 3.2E+02 0.011 26.5 8.8 65 498-585 54-118 (246)
135 1j58_A YVRK protein; cupin, de 20.3 1.6E+02 0.0054 30.8 6.9 52 496-550 259-312 (385)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=1.1e-32 Score=299.21 Aligned_cols=341 Identities=19% Similarity=0.266 Sum_probs=130.6
Q ss_pred eCCCChhHHHHHHHHHHHHHHHHHHhhhhccccccccccccccCCCchhhHHHHHHHHHHHHHHHHHHhhceeEEcCCCc
Q 005173 78 LDPRGPIINRWNKIFLVACLVSLFVDPLFFYLPEAKKNACINVSVPLEIILTVIRSLADAFYFVRIFIRFRTAFVAPSSR 157 (710)
Q Consensus 78 i~P~s~~~~~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~c~~~~~~~~~~~~~i~~~~D~~f~~Di~l~F~tay~~~~s~ 157 (710)
..|.|+.. +.++++++++++++.-+.. .|... ......+..++.++-++|++|+++++..+ +..
T Consensus 3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~t-~~~~~--------~~~~~~~~~~~~~~~~~f~~e~~~r~~~~---~~~- 66 (355)
T 3beh_A 3 VLPFLRIY---APLNAVLAAPGLLAVAALT-IPDMS--------GRSRLALAALLAVIWGAYLLQLAATLLKR---RAG- 66 (355)
T ss_dssp ----CCSS---SSHHHHHHHHHHHHHHHHT-SSSCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CSC-
T ss_pred CCchhHHH---HHHHHHHHHHHHHHHHHHc-ccchh--------hhHHHHHHHHHhHHHHHHHHHHHHhcccc---ccc-
Confidence 46777743 5555665666665555552 22111 11122344455555566899999988422 110
Q ss_pred ccCCCeEeeChHHHHHHHhh-hhhHhHhhhc-CCHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHHHHHhHhhhHHH
Q 005173 158 VLGRGDLVIDPSKISSRYLR-KDFWLDIMAA-QPIPQLLLWAVIPYLKGSSMVSTKNVIRLIIIFQYLLRLYLTFPLSYQ 235 (710)
Q Consensus 158 ~~~~G~lV~d~~~Ia~rYl~-~~F~iDlls~-lPl~~i~~~~~~~~~~~~~~~~~~~~Lrl~~l~qyl~Rl~ri~~l~~~ 235 (710)
.+|.+ .|.++|++++ +|+..+. .+ +...++..+++|+ .|+.|..+..+.
T Consensus 67 ---------------~~~~~~~~~i~Dl~~i~~p~~~~~----~~---~~~~~r~lr~~R~-------lrl~r~~~~~~~ 117 (355)
T 3beh_A 67 ---------------VVRDRTPKIAIDVLAVLVPLAAFL----LD---GSPDWSLYCAVWL-------LKPLRDSTFFPV 117 (355)
T ss_dssp ---------------SSCCCHHHHHHHHHHHHHHHHHHH----SC---CSGGGGGGGGGGG-------SHHHHTCSSHHH
T ss_pred ---------------ceeccCcchHHHHHHHHHHHHHHH----hc---cchhHHHHHHHHH-------HHHHHHHHHHHH
Confidence 12333 4899999999 6875432 11 1122333333332 344444444444
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCCCcccccccCCCCCCCccccccccc
Q 005173 236 IIKASGVLLETSWAGAAYNLMLYMLASHVLGACWYLLSVERQEECWRKVCRSHHLECNIGFFDCHLVKDSSRVNLFQMSN 315 (710)
Q Consensus 236 i~~~~~~~~~t~~~~~~~~lll~~l~~H~~ac~wyll~~~~~~~cw~~~c~~~~~~c~~~~l~~~~~~~~~~~sW~~~~~ 315 (710)
+.+... . .....+..++++++..|+.||++|.+.- |.
T Consensus 118 l~~~l~---~-~~~~l~~~~~~~~~~~~~~a~~~~~~e~-----------------------------------~~---- 154 (355)
T 3beh_A 118 LGRVLA---N-EARNLIGVTTLFGVVLFAVALAAYVIER-----------------------------------DI---- 154 (355)
T ss_dssp HHHHHH---H-THHHHHHHHHHHHHHHHHHHHHHHHHHT-----------------------------------TT----
T ss_pred HHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------------------------------CC----
Confidence 333221 1 1122333444556778999999998631 00
Q ss_pred ccccCCCCCCCCcccchhhhhhhcccCCchHHHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHH
Q 005173 316 ISSLCDPKSNYYQFGIFADAVILGVTASRFLDKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIG 395 (710)
Q Consensus 316 l~~~c~~~~~~~~~gi~~~al~~~i~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig 395 (710)
+++.+..|..|+||++.|+||+||||++|.+..|++++++++++|++++++++|
T Consensus 155 --------------------------~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~ 208 (355)
T 3beh_A 155 --------------------------QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAG 208 (355)
T ss_dssp --------------------------CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 011234688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCChHHHHhcCCchhHHHHHHHHhhhhh
Q 005173 396 NMQTYLQSTTVRLEEWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRHLCLDLV 475 (710)
Q Consensus 396 ~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~g~de~~ll~~Lp~~Lr~~I~~~l~~~~L 475 (710)
.+.+.++... ++ +++. .+.+.+
T Consensus 209 ~i~~~~~~~~------~~----------------------~~~~------------------------------~~~~~l 230 (355)
T 3beh_A 209 ILATGFYQEV------RR----------------------GDFV------------------------------RNWQLV 230 (355)
T ss_dssp HHHHHHHHHH------HH----------------------HHHH------------------------------HHHC--
T ss_pred HHHHHHHHHH------HH----------------------Hhhc------------------------------ccchhh
Confidence 9988775321 10 0000 024678
Q ss_pred hhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhh
Q 005173 476 RQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLT 555 (710)
Q Consensus 476 ~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~ 555 (710)
+++|+|+++++++++.++..++.+.|+|||.|+++||+++++|||.+|.++++..+ + ..+++|++|||.+++
T Consensus 231 ~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~l 302 (355)
T 3beh_A 231 AAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMALI 302 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHHh
Confidence 88999999999999999999999999999999999999999999999999998654 2 468999999999774
Q ss_pred hccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHH
Q 005173 556 WALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHV 607 (710)
Q Consensus 556 ~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~ 607 (710)
.+.| +..+++|.++|+++.+++++|.++++++|++....++..
T Consensus 303 ---~~~~------~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l 345 (355)
T 3beh_A 303 ---SGEP------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTA 345 (355)
T ss_dssp ----------------------------------------------------
T ss_pred ---CCCC------cceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 2232 779999999999999999999999999998876655443
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=1e-31 Score=269.66 Aligned_cols=206 Identities=24% Similarity=0.391 Sum_probs=177.1
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCChHHHHhcCCchhHHHHHHHHhhhhhhh
Q 005173 398 QTYLQSTTVRLEEWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRHLCLDLVRQ 477 (710)
Q Consensus 398 ~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~g~de~~ll~~Lp~~Lr~~I~~~l~~~~L~~ 477 (710)
++++++++.+..+|+++++++++||+++++|++||.||++|++|.|..+++.|++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999998887 8
Q ss_pred cccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhc
Q 005173 478 VPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWA 557 (710)
Q Consensus 478 vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~ 557 (710)
+|+|+++++++++.++..+++..|+||++|+++||+++++|||.+|.|+++. +|. .+..+++|++|||.+++.
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~~----~~~~l~~G~~fGe~~~~~- 152 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DNT----VLAILGKGDLIGSDSLTK- 152 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SSC----EEEEECTTCEEECSCCSS-
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CCe----EEEEecCCCCcCcHHhcc-
Confidence 9999999999999999999999999999999999999999999999999985 232 279999999999997742
Q ss_pred cCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhchhhhh
Q 005173 558 LDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFRCHSPQWRT 617 (710)
Q Consensus 558 l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r~~s~~~~~ 617 (710)
+. .++++++++|+++|+++.|++++|.+++.++|++..+.++...+..+...+.
T Consensus 153 --~~----~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr~ 206 (212)
T 3ukn_A 153 --EQ----VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLRE 206 (212)
T ss_dssp --SS----CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEECBC
T ss_pred --CC----CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcccccc
Confidence 21 0028899999999999999999999999999999988888777766654443
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=1.8e-30 Score=257.76 Aligned_cols=191 Identities=22% Similarity=0.368 Sum_probs=174.5
Q ss_pred hccHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCChHHHHhcCCchhHHHHHHHHhhhhhhhcccCC
Q 005173 403 STTVRLEEWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRHLCLDLVRQVPLFD 482 (710)
Q Consensus 403 ~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~g~de~~ll~~Lp~~Lr~~I~~~l~~~~L~~vplF~ 482 (710)
+++.+..+|+++++++++||+++++|++|+.||++|++|.|. +++.+|+++++.||++||.++..+++.++++++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 577889999999999999999999999999999999999998 5899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCC
Q 005173 483 LMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRP 562 (710)
Q Consensus 483 ~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~ 562 (710)
++++++++.++..++...|.||++|+++||+++.+|||.+|.|+++. .+|+ . +..+++|++|||.+++.. .|
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~--~~~l~~G~~fGe~~~~~~---~~ 152 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--I--ATSLSDGSYFGEICLLTR---ER 152 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--E--EEEECTTCEESCHHHHHS---SC
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--E--EEEecCCCEechHHHcCC---Cc
Confidence 99999999999999999999999999999999999999999999987 3444 2 789999999999987532 22
Q ss_pred CCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 005173 563 SVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVF 608 (710)
Q Consensus 563 ~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~ 608 (710)
+.++++|+++|+++.|++++|.+++.++|++....++...
T Consensus 153 ------~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~ 192 (198)
T 2ptm_A 153 ------RVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAV 192 (198)
T ss_dssp ------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ------cceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHH
Confidence 7899999999999999999999999999988876665443
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=2.5e-30 Score=257.62 Aligned_cols=189 Identities=24% Similarity=0.387 Sum_probs=170.7
Q ss_pred HhccHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCChHHHHhcCCchhHHHHHHHHhhhhhhhcccC
Q 005173 402 QSTTVRLEEWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEESILDGLPTDLRRDIKRHLCLDLVRQVPLF 481 (710)
Q Consensus 402 ~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~g~de~~ll~~Lp~~Lr~~I~~~l~~~~L~~vplF 481 (710)
|+++.+..+|+++++++++||++++||++|+.||++|++|.|. +++.+|+++++.||++||.+|..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 5788999999999999999999999999999999999999997 589999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCC
Q 005173 482 DLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPR 561 (710)
Q Consensus 482 ~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~ 561 (710)
.++++++++.++..++...|+||++|+++||+++.+|||.+|.|+++. .+|++ ..+++|++|||.+++.. .
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~-----~~l~~G~~fGe~~~~~~---~ 151 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE-----MKLSDGSYFGEICLLTR---G 151 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC-----EEEETTCEECHHHHHHC---S
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE-----EEEcCCCEeccHHHhcC---C
Confidence 999999999999999999999999999999999999999999999975 44443 46899999999887532 2
Q ss_pred CCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHH
Q 005173 562 PSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRH 606 (710)
Q Consensus 562 ~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~ 606 (710)
+ +.++++|.++|+++.|++++|..++.++|++....++.
T Consensus 152 ~------~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 190 (202)
T 3bpz_A 152 R------RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETV 190 (202)
T ss_dssp B------CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHH
T ss_pred C------cccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHH
Confidence 2 78999999999999999999999999999776555443
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.85 E-value=1.5e-20 Score=190.28 Aligned_cols=211 Identities=17% Similarity=0.179 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccccccCCCchhhHHHHHHHHHHHHHHHHHHhhceeEEcCCCcccCCCeEee
Q 005173 87 RWNKIFLVACLVSLFVDPLFFYLPEAKKNACINVSVPLEIILTVIRSLADAFYFVRIFIRFRTAFVAPSSRVLGRGDLVI 166 (710)
Q Consensus 87 ~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~c~~~~~~~~~~~~~i~~~~D~~f~~Di~l~F~tay~~~~s~~~~~G~lV~ 166 (710)
.||.+++++.++++++.++....+ .+......+..++.+++++|.+|++++|.++. +
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~---------~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~---~----------- 65 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQ---------LSGEYLVRLYLVDLILVIILWADYAYRAYKSG---D----------- 65 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHH---------HTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS---C-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc---------cChhhhhHHHHHHHHHHHHHHHHHHHHHcccc---c-----------
Confidence 489898888888888776653221 12234557889999999999999999999851 1
Q ss_pred ChHHHHHHHhhhhhHhHhhhcCCHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHHHHHhHhhhHHH-HHHhhhhhhh
Q 005173 167 DPSKISSRYLRKDFWLDIMAAQPIPQLLLWAVIPYLKGSSMVSTKNVIRLIIIFQYLLRLYLTFPLSYQ-IIKASGVLLE 245 (710)
Q Consensus 167 d~~~Ia~rYl~~~F~iDlls~lPl~~i~~~~~~~~~~~~~~~~~~~~Lrl~~l~qyl~Rl~ri~~l~~~-i~~~~~~~~~ 245 (710)
.++|+++ +++|+++++|+....... . ..+ .....+.+|++|+ .|++|+.+..+. .+.....+.+
T Consensus 66 -----~~~y~~~-~iiDllailP~~~~~~~~-~-~~~---~~~~lr~lRllRl----lR~~r~~~~~~~~~~~l~~~~~~ 130 (223)
T 1orq_C 66 -----PAGYVKK-TLYEIPALVPAGLLALIE-G-HLA---GLGLFRLVRLLRF----LRILLIISRGSKFLSAIADAADK 130 (223)
T ss_dssp -----HHHHHHH-HHHHCTTHHHHHHHHHHH-H-HHH---TTTCHHHHHHHHH----HHHHHHHHSCSSHHHHHHHHHHH
T ss_pred -----HHHHHHH-hHHHHHHHHHHHHHHHHh-c-chh---HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799998 999999999997654210 0 000 0112333333322 233443331111 1111111111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCCCcccccccCCCCCCCcccccccccccccCCCCCC
Q 005173 246 TSWAGAAYNLMLYMLASHVLGACWYLLSVERQEECWRKVCRSHHLECNIGFFDCHLVKDSSRVNLFQMSNISSLCDPKSN 325 (710)
Q Consensus 246 t~~~~~~~~lll~~l~~H~~ac~wyll~~~~~~~cw~~~c~~~~~~c~~~~l~~~~~~~~~~~sW~~~~~l~~~c~~~~~ 325 (710)
.+....+++.++..|+.||++|++.- ++.++|
T Consensus 131 ---~~l~~~~~~~~~~~~~~~~~~~~~e~------------------------------~~~~~~--------------- 162 (223)
T 1orq_C 131 ---IRFYHLFGAVMLTVLYGAFAIYIVEY------------------------------PDPNSS--------------- 162 (223)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHTTS------------------------------SSTTCS---------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHh------------------------------CCcCCC---------------
Confidence 12233334445678888898887420 011111
Q ss_pred CCcccchhhhhhhcccCCchHHHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005173 326 YYQFGIFADAVILGVTASRFLDKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQS 403 (710)
Q Consensus 326 ~~~~gi~~~al~~~i~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~ 403 (710)
...|..|+||++.|+||+||||++|.+..|++++++++++|..++|+.+|++++.+++
T Consensus 163 --------------------~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 163 --------------------IKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp --------------------CCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------cCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2468899999999999999999999999999999999999999999999999999875
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.81 E-value=6.1e-19 Score=167.40 Aligned_cols=143 Identities=25% Similarity=0.386 Sum_probs=119.9
Q ss_pred HHHHhcCCchhHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec
Q 005173 452 ESILDGLPTDLRRDIKRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG 531 (710)
Q Consensus 452 ~~ll~~Lp~~Lr~~I~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~ 531 (710)
+++++.||++||.++..+++.++++++|+|++++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..
T Consensus 6 ~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~- 84 (160)
T 4f8a_A 6 EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD- 84 (160)
T ss_dssp ---------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET-
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC-
Confidence 5699999999999999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred CCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHH
Q 005173 532 GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHV 607 (710)
Q Consensus 532 ~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~ 607 (710)
+ . .+..+++|++||+.+++... +. ++.++++|.++|+++.|++++|.+++.++|++....++..
T Consensus 85 -~--~--~~~~~~~G~~fG~~~~~~~~-~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 85 -D--E--VVAILGKGDVFGDVFWKEAT-LA------QSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp -T--E--EEEEEETTCEEECCTTTCSS-CC------BCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred -C--E--EEEEecCCCEeCcHHHhcCc-cc------ceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2 27899999999999774211 02 2789999999999999999999999999999887766554
No 7
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.74 E-value=6.4e-17 Score=158.76 Aligned_cols=148 Identities=18% Similarity=0.241 Sum_probs=125.8
Q ss_pred hHHHHhcCCchhH----HHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEE
Q 005173 451 EESILDGLPTDLR----RDIKRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLD 526 (710)
Q Consensus 451 e~~ll~~Lp~~Lr----~~I~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~ 526 (710)
+..+.+.++|++- .+.......++++++|+|++++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 4556666776653 445555668899999999999999999999999999999999999999999999999999999
Q ss_pred EEEec-CCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHH
Q 005173 527 SYTTG-GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLR 605 (710)
Q Consensus 527 v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~ 605 (710)
++..+ +|++.+ +..+++|++||+.+++. +.+ +.++++|+++|+++.|++++|.+++.++|++..+.++
T Consensus 93 v~~~~~~g~~~~--~~~~~~G~~fGe~~~l~---~~~------~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~ 161 (187)
T 3gyd_A 93 VIKDIPNKGIQT--IAKVGAGAIIGEMSMID---GMP------RSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLI 161 (187)
T ss_dssp EEEEETTTEEEE--EEEEETTCEESHHHHHH---CCC------CSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEECCCCCeEE--EEEccCCCeeeeHHHhC---CCC------eeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHH
Confidence 99765 666655 79999999999998742 222 7789999999999999999999999999998877765
Q ss_pred HHHH
Q 005173 606 HVFR 609 (710)
Q Consensus 606 ~~~r 609 (710)
...+
T Consensus 162 ~l~~ 165 (187)
T 3gyd_A 162 RLLQ 165 (187)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 8
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.73 E-value=3.2e-17 Score=185.31 Aligned_cols=289 Identities=14% Similarity=0.177 Sum_probs=147.7
Q ss_pred CCC-ChhHHHHHHHHHHHHHHHHHHhhhhcccccccccc----------------ccc--cCCCchhhHHHHHHHHHHHH
Q 005173 79 DPR-GPIINRWNKIFLVACLVSLFVDPLFFYLPEAKKNA----------------CIN--VSVPLEIILTVIRSLADAFY 139 (710)
Q Consensus 79 ~P~-s~~~~~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~----------------c~~--~~~~~~~~~~~i~~~~D~~f 139 (710)
+|. |...+.|+.++++++++++++..+.-+ |...... ... ........+.+++.++.++|
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iF 252 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLETL-PIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWF 252 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence 465 567788888888888888877766532 2111000 000 00113456889999999999
Q ss_pred HHHHHHhhceeEEcCCCcccCCCeEeeChHHHHHHHhhh-hhHhHhhhcCCHHHHHHHhhccCCCCCch--hhhhhHHHH
Q 005173 140 FVRIFIRFRTAFVAPSSRVLGRGDLVIDPSKISSRYLRK-DFWLDIMAAQPIPQLLLWAVIPYLKGSSM--VSTKNVIRL 216 (710)
Q Consensus 140 ~~Di~l~F~tay~~~~s~~~~~G~lV~d~~~Ia~rYl~~-~F~iDlls~lPl~~i~~~~~~~~~~~~~~--~~~~~~Lrl 216 (710)
.+|++++|.++ +. .++|+++ |.++|+++++|+...+..... ..+.. ......+|+
T Consensus 253 tiE~ilR~~~~---~~----------------k~~Y~ks~wniiDli~iip~~i~l~~~~~---~~~~~~~~~~~~~lrv 310 (514)
T 2r9r_B 253 SFEFLVRFFAC---PS----------------KAGFFTNIMNIIDIVAIIPYYVTIFLTES---NKSVLQFQNVRRVVQI 310 (514)
T ss_dssp HHHHHHHHHHS---SC----------------SSSSTTSHHHHHHHHTTHHHHHHHHHHHT---SCSHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhC---Cc----------------HHHHHhchhHHHHHHHHHHHHHHHHhhhc---cccchhhhhHHHHHHH
Confidence 99999999875 11 1479998 899999999998654433211 11111 111233444
Q ss_pred HHHHHHHHHHHhHhhhHHH---HHHhhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCCC
Q 005173 217 IIIFQYLLRLYLTFPLSYQ---IIKASGVLLETSWAGAAYNLM-LYMLASHVLGACWYLLSVERQEECWRKVCRSHHLEC 292 (710)
Q Consensus 217 ~~l~qyl~Rl~ri~~l~~~---i~~~~~~~~~t~~~~~~~~ll-l~~l~~H~~ac~wyll~~~~~~~cw~~~c~~~~~~c 292 (710)
+|+ .|++|++++.+. +......+... ...+..++ +.++..+++|+++|++--
T Consensus 311 lRl----lRvlRilkL~r~~~~l~~l~~tl~~s--~~~l~~ll~~l~i~~~if~~~~~~~e~------------------ 366 (514)
T 2r9r_B 311 FRI----MRILRIFKLSRHSKGLQILGQTLKAS--MRELGLLIFFLFIGVILFSSAVYFAEA------------------ 366 (514)
T ss_dssp HHH----HGGGGGGGGGGSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHHT------------------
T ss_pred HHH----HHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhheeec------------------
Confidence 333 244444444332 22221111111 11122222 233456777887775310
Q ss_pred cccccccCCCCCCCcccccccccccccCCCCCCCCcccchhhhhhhcccCCchHHHHHHHHHHHHHHhccccCCCccccc
Q 005173 293 NIGFFDCHLVKDSSRVNLFQMSNISSLCDPKSNYYQFGIFADAVILGVTASRFLDKYFYCLWWGLRNLSSLGQNLFTSTF 372 (710)
Q Consensus 293 ~~~~l~~~~~~~~~~~sW~~~~~l~~~c~~~~~~~~~gi~~~al~~~i~~~~~~~~Y~~slyw~l~tlstvG~gd~~~~~ 372 (710)
....+| +..|..|+||++.|+||+||||++|.+
T Consensus 367 ------------~~~~~~-----------------------------------F~s~~~a~y~~~vT~TTvGYGDi~P~t 399 (514)
T 2r9r_B 367 ------------DERDSQ-----------------------------------FPSIPDAFWWAVVSMTTVGYGDMVPTT 399 (514)
T ss_dssp ------------TCTTCS-----------------------------------CSSHHHHHHHHHHHHTTCCCSSSCCCS
T ss_pred ------------cCCCcc-----------------------------------ccchhhhhheeeeEEEecccCCCCCCC
Confidence 001111 245788999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcCCChH
Q 005173 373 VWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRLEEWRIRRTDTEKWMHHRQLPHGLKQSVRKYDQYRWVATRGVDEE 452 (710)
Q Consensus 373 ~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rVr~y~~y~w~~~~g~de~ 452 (710)
..+++|+++++++|++++++.+|.+.+.++....+..+ ++..+..++++.....|.....+ ++ +.+...++
T Consensus 400 ~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iicg~~~~~~~l~--~~------~~~~~~~~ 470 (514)
T 2r9r_B 400 IGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSSPKIPSSPDLK--KS------RSASTISK 470 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC-------------------------------------------
T ss_pred cchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCEEEeCCCccchhHH--hc------ccCCCccc
Confidence 99999999999999999999999999888766553322 12222233344444444332211 10 12233344
Q ss_pred HHHhcCCchhHHHHHHHH
Q 005173 453 SILDGLPTDLRRDIKRHL 470 (710)
Q Consensus 453 ~ll~~Lp~~Lr~~I~~~l 470 (710)
+-..+|...++.++...-
T Consensus 471 s~~~el~e~~~~~~~~~~ 488 (514)
T 2r9r_B 471 SDYMEIQEGVNNSNEDFR 488 (514)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 555666766666655443
No 9
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.72 E-value=1.1e-16 Score=157.13 Aligned_cols=151 Identities=9% Similarity=0.087 Sum_probs=119.4
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCee
Q 005173 471 CLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFC 549 (710)
Q Consensus 471 ~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~f 549 (710)
...+++.+|.|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +.++++|++|
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~ 82 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWL 82 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEE
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEE
Confidence 3457788999999999999999999999999999999999999999999999999999764 677755 7999999999
Q ss_pred cchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHH
Q 005173 550 GEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFRCHSPQWRTWAACFIQAAWFR 629 (710)
Q Consensus 550 Ge~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r~~s~~~~~~~~~~~q~~~~r 629 (710)
||...+.. +.| +..+++|+++|+++.|++++|.+++.++|++....++ .+......
T Consensus 83 ge~~~~~~--~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~----------------~~~~~l~~ 138 (194)
T 3dn7_A 83 SDYMAFQK--QQP------ADFYIQSVENCELLSITYTEQENLFERIPALERYFRL----------------VYQKSFAA 138 (194)
T ss_dssp CCHHHHHH--TCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHH----------------HHHHHHHH
T ss_pred eehHHHhc--CCC------CceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHH----------------HHHHHHHH
Confidence 98733222 222 7789999999999999999999999999976654433 33444555
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 005173 630 YKRRKEAAELKKREDMIS 647 (710)
Q Consensus 630 ~~~R~~~~~~~~~eery~ 647 (710)
..+|.......++++||.
T Consensus 139 ~~~~~~~l~~~~~~~Rl~ 156 (194)
T 3dn7_A 139 AQLRSKFQHMYSKEEQYH 156 (194)
T ss_dssp HHHHHHHHHHC-------
T ss_pred HHHHHHHHhcCCHHHHHH
Confidence 666777777888888885
No 10
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.72 E-value=4.4e-17 Score=151.27 Aligned_cols=131 Identities=16% Similarity=0.284 Sum_probs=113.4
Q ss_pred cCCchhHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCcee
Q 005173 457 GLPTDLRRDIKRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTG 536 (710)
Q Consensus 457 ~Lp~~Lr~~I~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~ 536 (710)
.+|..+|.+...+...++++++|+|++++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999954 343
Q ss_pred eeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHH
Q 005173 537 FFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCK 602 (710)
Q Consensus 537 ~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk 602 (710)
.+..+++|++||+..++.. .+ +..+++|+++|+++.|++++|.+++.++|.+..+
T Consensus 83 --~~~~~~~G~~fGe~~~l~~---~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 --KLCTMGPGKVFGELAILYN---CT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp --EEEEECTTCEESCHHHHHC---CC------CSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred --EEEEeCCCCEeccHHHHCC---CC------cceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 2789999999999987532 22 7789999999999999999999999999977644
No 11
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.71 E-value=9.3e-17 Score=148.91 Aligned_cols=130 Identities=15% Similarity=0.279 Sum_probs=110.1
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeee---eEEeCCCC
Q 005173 472 LDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFN---SCRIGPGD 547 (710)
Q Consensus 472 ~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~---~~~l~~Gd 547 (710)
.++|+++|+|++++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++ .. +..+++|+
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~~~~~G~ 82 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGS--AANSTVCSVVPGA 82 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC-----------CEEEEECTTC
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCc--eEeeeEEEecCCC
Confidence 467899999999999999999999999999999999999999999999999999998654 3433 23 68899999
Q ss_pred eecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhhc
Q 005173 548 FCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFRCHS 612 (710)
Q Consensus 548 ~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r~~s 612 (710)
+||+.+++ .+.+ +..+++|.++|+++.|++++|.+++.++|.+....++...+..+
T Consensus 83 ~fG~~~~~---~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~ 138 (142)
T 3mdp_A 83 IFGVSSLI---KPYH------YTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVL 138 (142)
T ss_dssp EECGGGSS---TTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EechHHHc---CCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 99998774 3333 77899999999999999999999999999998887776655443
No 12
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.69 E-value=9.3e-17 Score=153.08 Aligned_cols=130 Identities=17% Similarity=0.216 Sum_probs=114.9
Q ss_pred hHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeE
Q 005173 462 LRRDIKRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSC 541 (710)
Q Consensus 462 Lr~~I~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~ 541 (710)
-+.+..+....++|+++|+|++++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.. +.
T Consensus 27 ~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~ 104 (161)
T 3idb_B 27 PKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VG 104 (161)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EE
T ss_pred CCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EE
Confidence 3445556667889999999999999999999999999999999999999999999999999999999866777755 89
Q ss_pred EeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHH
Q 005173 542 RIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCK 602 (710)
Q Consensus 542 ~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk 602 (710)
.+++|++||+.+++ ...+ +..+++|+++|+++.|++++|.+++.++|.+..+
T Consensus 105 ~~~~G~~fGe~~~~---~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~ 156 (161)
T 3idb_B 105 NYDNRGSFGELALM---YNTP------RAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 156 (161)
T ss_dssp EEESCCEECGGGGT---CCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCC
T ss_pred EcCCCCEechHHHH---cCCC------cccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHH
Confidence 99999999999874 2333 7899999999999999999999999999976543
No 13
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.69 E-value=1.9e-17 Score=153.13 Aligned_cols=130 Identities=63% Similarity=1.018 Sum_probs=109.0
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecc
Q 005173 472 LDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGE 551 (710)
Q Consensus 472 ~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 551 (710)
.++++++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|++....+|++.++.+..+++|++|||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe 84 (137)
T 1wgp_A 5 SSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGD 84 (137)
T ss_dssp SCSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSST
T ss_pred HHHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecH
Confidence 45788999999999999999999999999999999999999999999999999997655677765522349999999999
Q ss_pred hhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHH
Q 005173 552 ELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHC 601 (710)
Q Consensus 552 ~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~s 601 (710)
.++++.+.+.|..+.|.++++++|+++|+++.|++++|.+++.++|++++
T Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 85 ELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 98633344443223334679999999999999999999999999997653
No 14
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.68 E-value=1.8e-15 Score=150.78 Aligned_cols=124 Identities=19% Similarity=0.261 Sum_probs=107.2
Q ss_pred hhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEe-cCCceeeeeeEEeCCCCeecchh
Q 005173 475 VRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTT-GGGRTGFFNSCRIGPGDFCGEEL 553 (710)
Q Consensus 475 L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fGe~~ 553 (710)
|+++|+|+++++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 46789999999999999999999999999999999999999999999999999976 4666655 89999999999987
Q ss_pred hhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 554 LTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 554 l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
++. +.| +..+++|+++|+++.+++++|..++.++|++....++...+
T Consensus 79 ~~~---~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 125 (216)
T 4ev0_A 79 LLD---EGE------RSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLAR 125 (216)
T ss_dssp HHH---CCB------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hcC---CCC------cceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHH
Confidence 742 222 77899999999999999999999999999887766655444
No 15
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.68 E-value=4.6e-16 Score=145.28 Aligned_cols=123 Identities=28% Similarity=0.402 Sum_probs=108.7
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeec
Q 005173 472 LDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 472 ~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 550 (710)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.. +..+++|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 567899999999999999999999999999999999999999999999999999999765 566644 79999999999
Q ss_pred chhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHH
Q 005173 551 EELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLR 605 (710)
Q Consensus 551 e~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~ 605 (710)
+.+++ .+.| +..+++|+++|+++.|++++|.+++.++|++....++
T Consensus 82 ~~~~~---~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 127 (149)
T 2pqq_A 82 ELSLF---DPGP------RTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLR 127 (149)
T ss_dssp GGGGT---SCEE------CSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHH
T ss_pred hHHhc---CCCC------cceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHH
Confidence 98774 2222 7789999999999999999999999999977655443
No 16
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.66 E-value=3.8e-15 Score=148.86 Aligned_cols=126 Identities=13% Similarity=0.128 Sum_probs=109.3
Q ss_pred hhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCe--e
Q 005173 473 DLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDF--C 549 (710)
Q Consensus 473 ~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~--f 549 (710)
++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+++|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeeeh
Confidence 57889999999999999999999999999999999999999999999999999999754 566655 799999999 6
Q ss_pred cchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 550 GEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 550 Ge~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
|+.+++ .+.| +..+++|+++|+++.|++++|.+++.++|++....++...+
T Consensus 81 g~~~~~---~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 131 (220)
T 3dv8_A 81 SASCIM---RSIQ------FEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMAT 131 (220)
T ss_dssp GGGGGC---TTCC------CCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHHHHh---CCCC------CceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 888763 3333 77899999999999999999999999999887766654443
No 17
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.66 E-value=3e-15 Score=151.07 Aligned_cols=127 Identities=17% Similarity=0.269 Sum_probs=111.9
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeec
Q 005173 472 LDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 472 ~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 550 (710)
.++|+++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 467889999999999999999999999999999999999999999999999999999765 666655 79999999999
Q ss_pred chhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 551 EELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 551 e~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
+.+++ .+.| +..+++|+++|+++.|++++|..++.++|++....++...+
T Consensus 83 ~~~~~---~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 132 (231)
T 3e97_A 83 ETAVL---AHQE------RSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLAR 132 (231)
T ss_dssp TTTTT---CCCC------CCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred eHHHh---CCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99774 3233 78999999999999999999999999999988777766554
No 18
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.65 E-value=7.2e-16 Score=156.24 Aligned_cols=128 Identities=13% Similarity=0.170 Sum_probs=113.1
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCee
Q 005173 471 CLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFC 549 (710)
Q Consensus 471 ~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~f 549 (710)
..++|+++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|++|
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~ 86 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGESF 86 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEEE
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCEe
Confidence 4678899999999999999999999999999999999999999999999999999999754 677655 7999999999
Q ss_pred cchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 550 GEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 550 Ge~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
|+..++. +.| +..+++|+++|+++.|++++|..++.++|++....++...+
T Consensus 87 G~~~~~~---~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 137 (237)
T 3fx3_A 87 GEAVALR---NTP------YPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFG 137 (237)
T ss_dssp CHHHHHH---TCC------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred chHHHhc---CCC------CCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9998752 222 77899999999999999999999999999887766655444
No 19
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.65 E-value=1.5e-15 Score=152.91 Aligned_cols=127 Identities=23% Similarity=0.387 Sum_probs=112.5
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeec
Q 005173 472 LDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 472 ~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 550 (710)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 456889999999999999999999999999999999999999999999999999999765 576655 79999999999
Q ss_pred chhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 551 EELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 551 e~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
+.+++ .+.| +..+++|+++|+++.|++++|.+++.++|++....++...+
T Consensus 83 ~~~~~---~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 132 (227)
T 3d0s_A 83 ELSIF---DPGP------RTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLAR 132 (227)
T ss_dssp CHHHH---SCSC------CSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred eHHHc---CCCC------ceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 99774 2233 77899999999999999999999999999988777665444
No 20
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.65 E-value=1.4e-15 Score=142.82 Aligned_cols=128 Identities=14% Similarity=0.206 Sum_probs=108.4
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeec
Q 005173 472 LDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 472 ~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 550 (710)
.++++++|+|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 567889999999999999999999999999999999999999999999999999998754 466644 79999999999
Q ss_pred chhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 551 EELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 551 e~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
+..++. +. +.+..+++|+++|+++.|++++|..++.++|++....++...+
T Consensus 89 ~~~~~~---~~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~ 139 (154)
T 2z69_A 89 EAMMFM---DT-----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 139 (154)
T ss_dssp GGGGGS---SC-----SBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHhhcc---CC-----CCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHH
Confidence 998742 11 1267899999999999999999999999999887766655433
No 21
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.64 E-value=6.1e-15 Score=148.42 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=100.9
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeec
Q 005173 472 LDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 472 ~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 550 (710)
...+++.++|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 456888999999999999999999999999999999999999999999999999999755 677755 89999999999
Q ss_pred chhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHh-----HHHHHHHHHHHHH
Q 005173 551 EELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQY-----RKLHCKQLRHVFR 609 (710)
Q Consensus 551 e~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~-----p~l~sk~L~~~~r 609 (710)
+..++.. . +++..+++|+++|+++.|++++|.+++.++ |++....++...+
T Consensus 88 ~~~~~~~---~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~ 143 (230)
T 3iwz_A 88 EMGLFIE---S-----DTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSK 143 (230)
T ss_dssp CGGGTSC---C-----SBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHH
T ss_pred ehhhhcC---C-----CCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHH
Confidence 9987421 1 127789999999999999999999999999 8877666554433
No 22
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.62 E-value=3e-15 Score=138.28 Aligned_cols=122 Identities=27% Similarity=0.450 Sum_probs=107.4
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 471 CLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 471 ~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
..++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ + ..+++|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEee
Confidence 3567999999999999999999999999999999999999999999999999999998654 2 4689999999
Q ss_pred chhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 551 EELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 551 e~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
+.+++. +.+ +..+++|+++|+++.|++++|.+++.++|++....++...+
T Consensus 81 ~~~~~~---~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 130 (138)
T 1vp6_A 81 EMALIS---GEP------RSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130 (138)
T ss_dssp HHHHHH---CCC------CSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ehHhcc---CCC------ceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 997742 222 67899999999999999999999999999888777665554
No 23
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.62 E-value=3.3e-15 Score=141.30 Aligned_cols=119 Identities=19% Similarity=0.276 Sum_probs=105.0
Q ss_pred HHHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCC
Q 005173 468 RHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGD 547 (710)
Q Consensus 468 ~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd 547 (710)
+....++|+++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++. +|+. +..+++|+
T Consensus 33 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~~----~~~~~~G~ 106 (154)
T 3pna_A 33 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW----ATSVGEGG 106 (154)
T ss_dssp HHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTEE----EEEECTTC
T ss_pred HHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCEE----EEEecCCC
Confidence 34567789999999999999999999999999999999999999999999999999999986 3432 68899999
Q ss_pred eecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHH
Q 005173 548 FCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHC 601 (710)
Q Consensus 548 ~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~s 601 (710)
+||+.+++. ..+ +.++++|+++|+++.|++++|.+++.++|.+..
T Consensus 107 ~fGe~~~~~---~~~------~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 107 SFGELALIY---GTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp EECCHHHHH---CCC------CSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred EeeehHhhc---CCC------cceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 999998753 222 778999999999999999999999999986653
No 24
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.61 E-value=2.3e-15 Score=152.49 Aligned_cols=128 Identities=15% Similarity=0.176 Sum_probs=111.1
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHhh--ceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCC
Q 005173 471 CLDLVRQVPLFDLMDDRMLVAVCER--LKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGD 547 (710)
Q Consensus 471 ~~~~L~~vplF~~ls~~~l~~l~~~--l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd 547 (710)
....++++|+|..++++.++.++.. ++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+++|+
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G~ 93 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAPY 93 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESSE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCCC
Confidence 4667899999999999999999998 999999999999999999999999999999998654 566655 79999999
Q ss_pred eecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 005173 548 FCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVF 608 (710)
Q Consensus 548 ~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~ 608 (710)
+||+.+++ .+. |.+..+++|+++|+++.|++++|.+++.++|++....++...
T Consensus 94 ~fG~~~~~---~~~-----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~ 146 (232)
T 1zyb_A 94 LIEPQSLF---GMN-----TNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVS 146 (232)
T ss_dssp EECGGGGS---SSC-----CBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHH
T ss_pred eeeehHHh---CCC-----CCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHH
Confidence 99999874 221 126789999999999999999999999999988766655433
No 25
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.61 E-value=1.2e-14 Score=146.75 Aligned_cols=123 Identities=16% Similarity=0.254 Sum_probs=106.0
Q ss_pred hhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhh
Q 005173 476 RQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELL 554 (710)
Q Consensus 476 ~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l 554 (710)
..+|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+++|++||+.++
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~~ 90 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRPY 90 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeehh
Confidence 36799999999999999999999999999999999999999999999999998654 566654 799999999999977
Q ss_pred hhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 555 TWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 555 ~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
+. +.| +..+++|+++|+++.|++++|.+++.++|++....++...+
T Consensus 91 ~~---~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 136 (232)
T 2gau_A 91 FA---EET------CSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK 136 (232)
T ss_dssp HH---TSC------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hC---CCC------cceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 53 222 77899999999999999999999999999888776665444
No 26
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.61 E-value=4.4e-15 Score=149.17 Aligned_cols=128 Identities=14% Similarity=0.201 Sum_probs=111.2
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeec
Q 005173 472 LDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 472 ~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 550 (710)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 567899999999999999999999999999999999999999999999999999998754 566654 79999999999
Q ss_pred chhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 551 EELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 551 e~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
+.+++ .+. |.+..+++|+++|+++.+++++|..++.++|.+....++...+
T Consensus 86 ~~~~~---~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 136 (227)
T 3dkw_A 86 EAMMF---MDT-----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 136 (227)
T ss_dssp CTTTT---TTC-----SBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHH
T ss_pred eHHhc---CCC-----CCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 98763 221 1267899999999999999999999999999887766655444
No 27
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.60 E-value=8.8e-15 Score=153.77 Aligned_cols=141 Identities=13% Similarity=0.247 Sum_probs=122.0
Q ss_pred HHHhcCCchhHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecC
Q 005173 453 SILDGLPTDLRRDIKRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGG 532 (710)
Q Consensus 453 ~ll~~Lp~~Lr~~I~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~ 532 (710)
....++|+..|.+...++..++++++++|++++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++. +
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~ 96 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--E 96 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--T
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--C
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999954 3
Q ss_pred CceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 005173 533 GRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVF 608 (710)
Q Consensus 533 g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~ 608 (710)
|+ .+..+.+|++|||.+++ .+.| +.++++|.++|+++.|++++|..++.++|...........
T Consensus 97 g~----~~~~~~~G~~fGe~~ll---~~~~------~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l 159 (299)
T 3shr_A 97 GV----KLCTMGPGKVFGELAIL---YNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFL 159 (299)
T ss_dssp TE----EEEEECTTCEESCSGGG---TTTB------CCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CE----EEEEeCCCCeeeHhHHh---cCCC------CCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHH
Confidence 32 27899999999999874 2222 8899999999999999999999999999976554444433
No 28
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.59 E-value=9.7e-15 Score=146.26 Aligned_cols=119 Identities=7% Similarity=0.115 Sum_probs=107.5
Q ss_pred hhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecch
Q 005173 473 DLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEE 552 (710)
Q Consensus 473 ~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~ 552 (710)
.+|+++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+ +..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC-
Confidence 46788999999999999999999999999999999999999999999999999997666777755 899999999998
Q ss_pred hhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 553 LLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 553 ~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
| +..+++|+++|+++.|++++|.+++.++|++....++...+
T Consensus 81 -------~--------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 122 (220)
T 2fmy_A 81 -------H--------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGD 122 (220)
T ss_dssp -------C--------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred -------c--------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 2 66899999999999999999999999999888776665444
No 29
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.58 E-value=4.1e-14 Score=140.22 Aligned_cols=121 Identities=15% Similarity=0.145 Sum_probs=101.5
Q ss_pred ccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhc
Q 005173 479 PLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWA 557 (710)
Q Consensus 479 plF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~ 557 (710)
++++.++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|++||+..++..
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~~~~ 79 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFEE 79 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTTTST
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHHhcC
Confidence 46677999999999999999999999999999999999999999999999764 677655 799999999999987422
Q ss_pred cCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 558 LDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 558 l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
. +++..+++|+++|+++.+++++|..++.++|++....++...+
T Consensus 80 ---~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 123 (210)
T 3ryp_A 80 ---G-----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR 123 (210)
T ss_dssp ---T-----CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred ---C-----CCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHH
Confidence 2 1277899999999999999999999999999887766655444
No 30
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.56 E-value=1e-13 Score=137.08 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=100.2
Q ss_pred CCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhccCCCC
Q 005173 484 MDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWALDPRP 562 (710)
Q Consensus 484 ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~ 562 (710)
|+++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+++|++||+.+++. +.+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~~~---~~~ 75 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGLFE---KEG 75 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTTCC------
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHHhc---CCC
Confidence 688999999999999999999999999999999999999999999765 577655 89999999999997742 220
Q ss_pred CCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 563 SVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 563 ~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
..+++..+++|+++|+++.|++++|.+++.++|.+....++...+
T Consensus 76 --~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 120 (207)
T 2oz6_A 76 --SEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD 120 (207)
T ss_dssp ----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred --CCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 000277899999999999999999999999999888766655443
No 31
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.56 E-value=2.3e-14 Score=153.07 Aligned_cols=127 Identities=19% Similarity=0.268 Sum_probs=111.7
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeec
Q 005173 472 LDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 472 ~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 550 (710)
.++|+++|+|+++++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++ + +..+++|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~--~~~~~~G~~fG 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-I--IARALPGMIVG 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-E--EEEECTTCEES
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-E--EEEecCCCEee
Confidence 467889999999999999999999999999999999999999999999999999999765 4443 3 78999999999
Q ss_pred chhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005173 551 EELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFRCH 611 (710)
Q Consensus 551 e~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r~~ 611 (710)
|.+++.. .| +..+++|+++|+++.|++++|..++ ++|.+..+.++...+..
T Consensus 89 e~~l~~~---~~------~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~ 139 (333)
T 4ava_A 89 EIALLRD---SP------RSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRL 139 (333)
T ss_dssp HHHHHHT---CB------CSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHH
T ss_pred HHHhcCC---CC------ceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHH
Confidence 9987532 22 7899999999999999999999999 99998877776655533
No 32
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.56 E-value=3.1e-15 Score=137.91 Aligned_cols=124 Identities=13% Similarity=0.194 Sum_probs=104.7
Q ss_pred CchhHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeC-CCCeeeecCCCCCeEEEEEeeEEEEEEecCCceee
Q 005173 459 PTDLRRDIKRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCT-PGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGF 537 (710)
Q Consensus 459 p~~Lr~~I~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~-kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~ 537 (710)
||..|.+.......++++++++|..++++.++.++..++.+.|. +|++|+++||+++.+|||.+|.|+++. .+|++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE--
Confidence 45555555555567789999999999999999999999999999 999999999999999999999999986 34443
Q ss_pred eeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEE-EEcceEEEEEecHHHHHHHHHHhH
Q 005173 538 FNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTV-KAITEVEAFAFVDEDLKFVASQYR 597 (710)
Q Consensus 538 ~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv-~Alt~~ell~L~~edf~~ll~~~p 597 (710)
..+++|++||+.+++ .+.+ +..++ +|+++|+++.|++++|..++.+++
T Consensus 79 ---~~l~~G~~fG~~~~~---~~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPTL---DKQY------MHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSSS---CCEE------CCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHhc---CCCc------ceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 458999999998763 3222 66788 999999999999999999987755
No 33
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.55 E-value=1.7e-14 Score=144.78 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=104.2
Q ss_pred hhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchh
Q 005173 474 LVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEEL 553 (710)
Q Consensus 474 ~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~ 553 (710)
+|+++|+|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++...+|++.+ +..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec---
Confidence 3678899999999999999999999999999999999999999999999999998556777755 89999999999
Q ss_pred hhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 554 LTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 554 l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
. | +.++++|+++|+++.|++++|.+++.++|.+....++...+
T Consensus 76 -----~--~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 118 (222)
T 1ft9_A 76 -----M--H------SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGR 118 (222)
T ss_dssp -----S--C------SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred -----C--C------CCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 1 1 67899999999999999999999999999877666554433
No 34
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.54 E-value=1.3e-13 Score=142.13 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=99.3
Q ss_pred CCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhccCC
Q 005173 482 DLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWALDP 560 (710)
Q Consensus 482 ~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~ 560 (710)
..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|++||+..++..
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~~~~--- 129 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLFEE--- 129 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTTTST---
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHHhCC---
Confidence 45899999999999999999999999999999999999999999999764 676655 899999999999987422
Q ss_pred CCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 561 RPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 561 ~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
. +++..+++|+++|+++.|++++|.+++.++|++....++...+
T Consensus 130 ~-----~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~ 173 (260)
T 3kcc_A 130 G-----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR 173 (260)
T ss_dssp T-----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred C-----CCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 2 1277899999999999999999999999999887666654443
No 35
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.53 E-value=5e-14 Score=140.65 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=98.0
Q ss_pred cccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhh
Q 005173 478 VPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTW 556 (710)
Q Consensus 478 vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~ 556 (710)
-|.|+..++...+.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|++||+..++.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~~~ 81 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFIFS 81 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGTTS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHHhc
Confidence 378888899999999999999999999999999999999999999999999764 677755 79999999999998742
Q ss_pred ccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 557 ALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 557 ~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
. . +++..+++|+++|+++.|++++|.+++.++|++....++...+
T Consensus 82 ~---~-----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 126 (213)
T 1o5l_A 82 S---E-----PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSE 126 (213)
T ss_dssp S---S-----CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred C---C-----CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 1 1 1277899999999999999999999999999887666654433
No 36
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.52 E-value=1.7e-13 Score=143.06 Aligned_cols=126 Identities=19% Similarity=0.302 Sum_probs=109.0
Q ss_pred HhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CC-ceeeeeeEEeCCCC
Q 005173 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GG-RTGFFNSCRIGPGD 547 (710)
Q Consensus 470 l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g-~~~~~~~~~l~~Gd 547 (710)
+...+++++++|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++... +| ++.. +..+++|+
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~--~~~l~~G~ 231 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVE--VGRLGPSD 231 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEE--EEEECTTC
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEE--EEEeCCCC
Confidence 34566788899999999999999999999999999999999999999999999999998654 33 3333 79999999
Q ss_pred eecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHH
Q 005173 548 FCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRH 606 (710)
Q Consensus 548 ~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~ 606 (710)
+|||.+++ .+.| +.++++|.++|+++.|++++|..++.++|++..+.++.
T Consensus 232 ~fGe~~ll---~~~~------~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~ 281 (291)
T 2qcs_B 232 YFGEIALL---MNRP------KAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQ 281 (291)
T ss_dssp EECSGGGT---CCCC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHH
T ss_pred EecHHHHc---CCCC------cceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHH
Confidence 99999874 3333 78999999999999999999999999999877665543
No 37
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.52 E-value=2.9e-14 Score=149.85 Aligned_cols=127 Identities=17% Similarity=0.319 Sum_probs=111.4
Q ss_pred HHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec--CCceeeeeeEEeCCC
Q 005173 469 HLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG--GGRTGFFNSCRIGPG 546 (710)
Q Consensus 469 ~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~--~g~~~~~~~~~l~~G 546 (710)
.....+++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|++.. +..+++|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCC
Confidence 345678889999999999999999999999999999999999999999999999999999865 566544 7999999
Q ss_pred CeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHH
Q 005173 547 DFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRH 606 (710)
Q Consensus 547 d~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~ 606 (710)
++|||.+++ ...| +.++++|.++|+++.|++++|.+++.++|++..+.++.
T Consensus 231 ~~fGe~~ll---~~~~------~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 281 (299)
T 3shr_A 231 DWFGEKALQ---GEDV------RTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYED 281 (299)
T ss_dssp CEECGGGGS---SSEE------CSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHH
T ss_pred CEeChHHHh---CCCC------cceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHH
Confidence 999999874 3233 78999999999999999999999999999776655543
No 38
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.51 E-value=1.7e-13 Score=143.19 Aligned_cols=130 Identities=18% Similarity=0.236 Sum_probs=113.7
Q ss_pred HHHHHHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeC
Q 005173 465 DIKRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIG 544 (710)
Q Consensus 465 ~I~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~ 544 (710)
+-..+...++|+++|+|++++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|+ .+..++
T Consensus 31 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~----~~~~l~ 104 (291)
T 2qcs_B 31 YKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE----WATSVG 104 (291)
T ss_dssp HHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTE----EEEEEC
T ss_pred HHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCe----EEEEcC
Confidence 33455668889999999999999999999999999999999999999999999999999999987 342 278999
Q ss_pred CCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 545 PGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 545 ~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
+|++|||.+++ .+.| +.++++|.++|+++.|++++|..++.++|.+..+.+....+
T Consensus 105 ~G~~fGe~~l~---~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 105 EGGSFGELALI---YGTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp TTCEECGGGGT---CCCB------CSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHh---cCCC------CceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999998874 3232 78999999999999999999999999999888777766555
No 39
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1e-13 Score=140.53 Aligned_cols=118 Identities=19% Similarity=0.292 Sum_probs=105.7
Q ss_pred HhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCee
Q 005173 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFC 549 (710)
Q Consensus 470 l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 549 (710)
+...+++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|||.+|.++++..+++ . +..+++|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~--~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---V--INKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---E--EEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---e--EEEcCCCCcc
Confidence 4566788899999999999999999999999999999999999999999999999999876554 2 7899999999
Q ss_pred cchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHH
Q 005173 550 GEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHC 601 (710)
Q Consensus 550 Ge~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~s 601 (710)
||.+++. ..| +.++++|.++|+++.|++++|.+++..+|++..
T Consensus 197 Ge~~~~~---~~~------~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 197 GEVALLN---DLP------RQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp CHHHHHH---TCB------CSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred cHHHHhC---CCC------cccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 9998753 232 789999999999999999999999999997654
No 40
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.50 E-value=9.3e-14 Score=140.89 Aligned_cols=124 Identities=18% Similarity=0.235 Sum_probs=107.2
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 471 CLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 471 ~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
..++|+++|+|++++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +++. +..+++|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCEE----EEecCCCCeee
Confidence 35678999999999999999999999999999999999999999999999999999985 3332 68899999999
Q ss_pred chhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 551 EELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 551 e~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
|.+++.. .| +.++++|.++|+++.|++++|..++.++|...........+
T Consensus 79 e~~l~~~---~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (246)
T 3of1_A 79 ELALMYN---SP------RAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLK 128 (246)
T ss_dssp HHHHHHT---CC------CSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHH
T ss_pred hhHHhcC---CC------CCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHh
Confidence 9987532 22 78999999999999999999999999999766554444333
No 41
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.49 E-value=1.9e-13 Score=151.07 Aligned_cols=129 Identities=17% Similarity=0.243 Sum_probs=114.6
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEE
Q 005173 463 RRDIKRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCR 542 (710)
Q Consensus 463 r~~I~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~ 542 (710)
|.+-..+...+.|+++++|++++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.. +..
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~~ 212 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGN 212 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EEE
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EEE
Confidence 444556667889999999999999999999999999999999999999999999999999999999877777755 799
Q ss_pred eCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHH
Q 005173 543 IGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCK 602 (710)
Q Consensus 543 l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk 602 (710)
+.+|++|||.+++. ..| +.++++|+++|+++.|++++|..++.++|....+
T Consensus 213 l~~G~~fGe~all~---~~p------r~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~ 263 (416)
T 3tnp_B 213 YDNRGSFGELALMY---NTP------KAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 263 (416)
T ss_dssp EESCCEECGGGGTS---CCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSS
T ss_pred ecCCCEEeeHHHhc---CCC------cccEEEEccCeEEEEEeehhhhhhhhcchhHHHH
Confidence 99999999998742 333 8899999999999999999999999999976544
No 42
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=150.54 Aligned_cols=128 Identities=17% Similarity=0.291 Sum_probs=110.8
Q ss_pred HHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec--CCceeeeeeEEeCCC
Q 005173 469 HLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG--GGRTGFFNSCRIGPG 546 (710)
Q Consensus 469 ~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~--~g~~~~~~~~~l~~G 546 (710)
.++..+++++++|..+++..+..++..++...|.+|++|+++|++++.+|||.+|.|+++..+ ++++. .+..+++|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~--~v~~l~~G 321 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYV--EVGRLGPS 321 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCC--EEEEECTT
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceE--EEEEeCCC
Confidence 345677889999999999999999999999999999999999999999999999999999764 33232 37899999
Q ss_pred CeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHH
Q 005173 547 DFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHV 607 (710)
Q Consensus 547 d~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~ 607 (710)
++|||.+++ ...| +.++++|+++|+++.|++++|..++..+|++..+.+++.
T Consensus 322 d~fGe~all---~~~~------r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~ 373 (381)
T 4din_B 322 DYFGEIALL---LNRP------RAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY 373 (381)
T ss_dssp CEECTTGGG---SCCB------CSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred CEechHHHh---CCCC------ceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999884 3333 889999999999999999999999999998776665543
No 43
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.45 E-value=4.1e-13 Score=146.57 Aligned_cols=132 Identities=17% Similarity=0.242 Sum_probs=113.2
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEE
Q 005173 463 RRDIKRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCR 542 (710)
Q Consensus 463 r~~I~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~ 542 (710)
|.+-.++...+.|+++++|++++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|+. +..
T Consensus 120 ks~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~~----v~~ 193 (381)
T 4din_B 120 KDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGEW----VTN 193 (381)
T ss_dssp CCHHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTEE----EEE
T ss_pred CCHHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCeE----eee
Confidence 3334445567889999999999999999999999999999999999999999999999999999986 3332 688
Q ss_pred eCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 543 IGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 543 l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
+++|++|||.+++. ..| +.++++|+++|+++.|++++|..++.++|....+.+....+
T Consensus 194 l~~G~~fGe~all~---~~~------r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~ 251 (381)
T 4din_B 194 ISEGGSFGELALIY---GTP------RAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 251 (381)
T ss_dssp EESSCCBCGGGGTS---CCB------CSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEchHHhc---CCC------cceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhh
Confidence 99999999998742 232 78999999999999999999999999999877666554444
No 44
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.45 E-value=3.5e-13 Score=127.80 Aligned_cols=64 Identities=19% Similarity=0.475 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Q 005173 347 DKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRLEE 410 (710)
Q Consensus 347 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e 410 (710)
..|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+.+...+.++
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~ 146 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRG 146 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC----
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999877654443
No 45
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.45 E-value=6.3e-13 Score=135.89 Aligned_cols=120 Identities=13% Similarity=0.149 Sum_probs=103.1
Q ss_pred hhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhh
Q 005173 476 RQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELL 554 (710)
Q Consensus 476 ~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l 554 (710)
.++..+..+++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +..+++|++||+ .+
T Consensus 12 ~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~-~l 88 (250)
T 3e6c_C 12 GAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK-LY 88 (250)
T ss_dssp CCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC-CS
T ss_pred hhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee-ec
Confidence 33344488999999999999999999999999999999999999999999999764 677755 899999999999 32
Q ss_pred hhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 555 TWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 555 ~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
.+ . +..+++|+++|+++.|++++|..++.++|++....++...+
T Consensus 89 ----~~------~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 132 (250)
T 3e6c_C 89 ----PT------G-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLT 132 (250)
T ss_dssp ----CC------S-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred ----CC------C-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 21 2 56899999999999999999999999999888776665544
No 46
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.44 E-value=6.8e-13 Score=148.41 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=121.6
Q ss_pred HHhhcCCChHHHHh-cCCchhHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEE
Q 005173 443 WVATRGVDEESILD-GLPTDLRRDIKRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIV 521 (710)
Q Consensus 443 w~~~~g~de~~ll~-~Lp~~Lr~~I~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~ 521 (710)
+....++..+.+-. ..|+..|.+...+...+.++++++|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.
T Consensus 11 ~~~~~~~~~e~~~~l~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~ 90 (469)
T 1o7f_A 11 HAAHSQSSAEWIACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVL 90 (469)
T ss_dssp --------CHHHHHHTSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEE
T ss_pred ccccccCcHHHHHHhcCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEE
Confidence 33344445443311 35788888888888899999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHH
Q 005173 522 RGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLH 600 (710)
Q Consensus 522 ~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~ 600 (710)
+|.|+++..+ +|++....+..+++|++||+.+ +.. .| +.++++|.++|+++.|++++|..++.++|++.
T Consensus 91 ~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~~-l~~---~~------~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~ 160 (469)
T 1o7f_A 91 AGSLDVKVSETSSHQDAVTICTLGIGTAFGESI-LDN---TP------RHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (469)
T ss_dssp ESCEEEEECSSSCGGGCEEEEEECTTCEECGGG-GGT---CB------CSSEEEESSSEEEEEEEHHHHHHHHHHHGGGT
T ss_pred eeEEEEEEecCCCCCcceEEEEccCCCCcchhh-hCC---CC------ccceEEEccceeEEEEcHHHHHHHHHhCHHHH
Confidence 9999999765 4432112379999999999987 421 22 78999999999999999999999999999766
Q ss_pred HHHHH
Q 005173 601 CKQLR 605 (710)
Q Consensus 601 sk~L~ 605 (710)
...++
T Consensus 161 ~~l~~ 165 (469)
T 1o7f_A 161 AGLLA 165 (469)
T ss_dssp TTTSC
T ss_pred HHHHH
Confidence 54443
No 47
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.44 E-value=1e-12 Score=124.12 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----ccHHHHHHHHHHHHH
Q 005173 349 YFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQT------YLQS----TTVRLEEWRIRRTDT 418 (710)
Q Consensus 349 Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~------~l~~----~~~~~~e~~~k~~~~ 418 (710)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.+++++++++.. +.+. .+....+.+++++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999987 3332 345556667788999
Q ss_pred HHHHHhCCCCHHHHHH
Q 005173 419 EKWMHHRQLPHGLKQS 434 (710)
Q Consensus 419 ~~~m~~~~lp~~L~~r 434 (710)
+++|+.++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999876
No 48
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.44 E-value=2.9e-13 Score=149.53 Aligned_cols=124 Identities=12% Similarity=0.228 Sum_probs=106.2
Q ss_pred HhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecC-------CceeeeeeEE
Q 005173 470 LCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGG-------GRTGFFNSCR 542 (710)
Q Consensus 470 l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~-------g~~~~~~~~~ 542 (710)
++..+++++++|..++++.+..++..++.+.|.+|++|+++|++++.+|||.+|.|+++..+. |++.. +..
T Consensus 264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~--l~~ 341 (416)
T 3tnp_B 264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE--IAR 341 (416)
T ss_dssp SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE--EEE
T ss_pred HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE--EEE
Confidence 456778899999999999999999999999999999999999999999999999999986543 55544 799
Q ss_pred eCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHH
Q 005173 543 IGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQL 604 (710)
Q Consensus 543 l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L 604 (710)
+++|++|||.+++ ...| +.++|+|+++|+++.|++++|..++..+|++..+.+
T Consensus 342 l~~G~~fGE~all---~~~~------r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~ 394 (416)
T 3tnp_B 342 CFRGQYFGELALV---TNKP------RAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNI 394 (416)
T ss_dssp ECTTCEESGGGGT---CCSC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC-
T ss_pred eCCCCEecHHHHh---CCCC------ceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHH
Confidence 9999999999884 3333 889999999999999999999999999997754443
No 49
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.43 E-value=2e-13 Score=127.02 Aligned_cols=94 Identities=12% Similarity=0.240 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhCCC
Q 005173 348 KYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRLEEWRIRRTDTEKWMHHRQL 427 (710)
Q Consensus 348 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~l 427 (710)
.|..|+||++.|+|||||||++|.+..|++++++++++|++++|+++|.+++.+++...+..+.+...+..+...+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 37889999999999999999999999999999999999999999999999999877655544443333333344455667
Q ss_pred CHHHHHHHHHHHHH
Q 005173 428 PHGLKQSVRKYDQY 441 (710)
Q Consensus 428 p~~L~~rVr~y~~y 441 (710)
+++.+..+++|.+.
T Consensus 123 ~~~~i~~l~~~l~l 136 (137)
T 4h33_A 123 TKEEIAVVEQFLTL 136 (137)
T ss_dssp --------------
T ss_pred cHHHHHHHHHHHhc
Confidence 77777777776643
No 50
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.40 E-value=8e-12 Score=126.75 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=95.9
Q ss_pred CCCCHHHHHHHHh--hceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhcc
Q 005173 482 DLMDDRMLVAVCE--RLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWAL 558 (710)
Q Consensus 482 ~~ls~~~l~~l~~--~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l 558 (710)
++++++.++.++. .++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+ +|++||+.+++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~~--- 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGFI--- 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBCT---
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhhh---
Confidence 3678889998885 5999999999999999999999999999999998754 677755 6788 99999999774
Q ss_pred CCCCCCCCCCcccEEEEc-ceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 559 DPRPSVILPSSTRTVKAI-TEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 559 ~~~~~~~~p~s~~tv~Al-t~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
.+.+ +.+..++.|+ ++|+++.|++++|..++.++|++....++...+
T Consensus 76 ~~~~----~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 123 (238)
T 2bgc_A 76 DTET----SVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQK 123 (238)
T ss_dssp TTCC----BSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCC----cCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 2221 0025678888 599999999999999999999988777765544
No 51
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.40 E-value=5.2e-12 Score=128.67 Aligned_cols=115 Identities=13% Similarity=0.072 Sum_probs=97.2
Q ss_pred HHHHHHHHhhce---eEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhccCCC
Q 005173 486 DRMLVAVCERLK---PRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWALDPR 561 (710)
Q Consensus 486 ~~~l~~l~~~l~---~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~ 561 (710)
+++++.++.... .+.|++|++|+++|++++.+|||.+|.|+++..+ +|++.+ +.++++|++||+.+++. ..
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~~~---~~ 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSLLT---GN 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHHHS---SC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHHhC---CC
Confidence 778888888888 9999999999999999999999999999999754 566655 89999999999987742 22
Q ss_pred CCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHHHHH
Q 005173 562 PSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRHVFR 609 (710)
Q Consensus 562 ~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~~~r 609 (710)
| ..+..+++|+++|+++.|++++|.+++.++|++....++...+
T Consensus 105 ~----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 148 (243)
T 3la7_A 105 K----SDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS 148 (243)
T ss_dssp C----SBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C----CcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 1 0145799999999999999999999999999988776655444
No 52
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.38 E-value=1.9e-12 Score=144.85 Aligned_cols=124 Identities=13% Similarity=0.190 Sum_probs=104.0
Q ss_pred HHHHhhhhhhhcccCCCCCHHHHHHHHhhcee-EEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCC
Q 005173 467 KRHLCLDLVRQVPLFDLMDDRMLVAVCERLKP-RLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGP 545 (710)
Q Consensus 467 ~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~-~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~ 545 (710)
......+.++++|+|.+++++.++.++..+.. +.|++|++|+++||+++.+|||.+|.|+++..++ +. +..+++
T Consensus 331 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~---~~--~~~l~~ 405 (469)
T 1o7f_A 331 DLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK---GV--VCTLHE 405 (469)
T ss_dssp HHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT---EE--EEEEET
T ss_pred HHHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC---ee--EEEecC
Confidence 34445778999999999999999999999985 4899999999999999999999999999987432 12 799999
Q ss_pred CCeecchhhhhccCCCCCCCCCCcccEEEEcc-eEEEEEecHHHHHHHHHHhHHHHHHHH
Q 005173 546 GDFCGEELLTWALDPRPSVILPSSTRTVKAIT-EVEAFAFVDEDLKFVASQYRKLHCKQL 604 (710)
Q Consensus 546 Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt-~~ell~L~~edf~~ll~~~p~l~sk~L 604 (710)
|++|||.+++ ...| +.++++|++ +|+++.|++++|..++.++|.+..++.
T Consensus 406 G~~fGe~~ll---~~~~------~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~ 456 (469)
T 1o7f_A 406 GDDFGKLALV---NDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLK 456 (469)
T ss_dssp TCEECGGGGT---CCSC------CSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-----
T ss_pred CCEEEEehhh---cCCC------ceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 9999999874 3333 889999999 799999999999999999997655443
No 53
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.33 E-value=6e-12 Score=114.68 Aligned_cols=59 Identities=20% Similarity=0.491 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005173 347 DKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTT 405 (710)
Q Consensus 347 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~ 405 (710)
..|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.+|++.+.+++..
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999987643
No 54
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.29 E-value=1.7e-11 Score=149.87 Aligned_cols=136 Identities=20% Similarity=0.246 Sum_probs=111.0
Q ss_pred HHHhcCCchhHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-
Q 005173 453 SILDGLPTDLRRDIKRHLCLDLVRQVPLFDLMDDRMLVAVCERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG- 531 (710)
Q Consensus 453 ~ll~~Lp~~Lr~~I~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~- 531 (710)
..|+.-| .-|.+--.++-...|+++++|+++++.++.+||.++....|++|++|+++||+++.+|+|++|.|.++..+
T Consensus 23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~ 101 (999)
T 4f7z_A 23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (999)
T ss_dssp HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence 3444544 34543333455677899999999999999999999999999999999999999999999999999998753
Q ss_pred --CCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHHHHHHHHHHhHHHHH
Q 005173 532 --GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDEDLKFVASQYRKLHC 601 (710)
Q Consensus 532 --~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~s 601 (710)
++.+. .+..+++|+.||| +++. ..| |++|++|.++|++++|++++|+.++.++|+...
T Consensus 102 ~~~~~~~--~v~~l~~G~sFGE-all~---n~p------RtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~ 161 (999)
T 4f7z_A 102 SSHQDAV--TICTLGIGTAFGE-SILD---NTP------RHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161 (999)
T ss_dssp SCTTSCE--EEEEEETTCEECG-GGGG---TCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred CCCCCce--eEEEecCCcchhh-hhcc---CCC------cceEEEeccceEEEEEEHHHHHHHHHhChHHHH
Confidence 22232 3789999999999 5532 222 889999999999999999999999999996543
No 55
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.24 E-value=2e-11 Score=142.83 Aligned_cols=133 Identities=15% Similarity=0.199 Sum_probs=111.5
Q ss_pred HHHHhcCCchhHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhce-eEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEe
Q 005173 452 ESILDGLPTDLRRDIKRHLCLDLVRQVPLFDLMDDRMLVAVCERLK-PRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTT 530 (710)
Q Consensus 452 ~~ll~~Lp~~Lr~~I~~~l~~~~L~~vplF~~ls~~~l~~l~~~l~-~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~ 530 (710)
..+|+..|. .|.+.......+.++++++|.+++++.++.++..+. .+.|++|++|+++||+++.+|||.+|.|+++..
T Consensus 12 r~iL~k~p~-~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKPPG-QRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSCGG-GCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCChh-hCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 456654444 455444555678899999999999999999999998 689999999999999999999999999999875
Q ss_pred cCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcc-eEEEEEecHHHHHHHHHHhHHH
Q 005173 531 GGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAIT-EVEAFAFVDEDLKFVASQYRKL 599 (710)
Q Consensus 531 ~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt-~~ell~L~~edf~~ll~~~p~l 599 (710)
+ + ++ +..+++|++|||.+++. +.+ +.++++|++ +|+++.|++++|.+++.++|.+
T Consensus 91 g--~-~i--l~~l~~Gd~fGe~al~~---~~~------~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 G--K-GV--VCTLHEGDDFGKLALVN---DAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp T--T-EE--EEEEETTCEECHHHHHH---TCB------CSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred C--C-EE--EEEeCCCCEeehHHHhC---CCC------ceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 2 2 23 79999999999987752 222 779999999 5999999999999999998865
No 56
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.24 E-value=3.8e-11 Score=111.99 Aligned_cols=90 Identities=17% Similarity=0.371 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHhC
Q 005173 347 DKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRL-EEWRIRRTDTEKWMHHR 425 (710)
Q Consensus 347 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~-~e~~~k~~~~~~~m~~~ 425 (710)
..|..|+||++.|+||+||||++|.+..+++++++.+++|+++++++++.+.+.+.....+. ++++.+.+.....+-++
T Consensus 39 ~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (139)
T 3eff_K 39 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTR 118 (139)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999876544333 33333333333333333
Q ss_pred CCCHHHHHHHHH
Q 005173 426 QLPHGLKQSVRK 437 (710)
Q Consensus 426 ~lp~~L~~rVr~ 437 (710)
++ .++.+|+.+
T Consensus 119 ~~-~~l~~~l~~ 129 (139)
T 3eff_K 119 TT-RALHERFDR 129 (139)
T ss_dssp HH-HHHHHHHHH
T ss_pred HH-HHHHHHHHH
Confidence 33 455555544
No 57
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.18 E-value=1.1e-10 Score=114.47 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=76.9
Q ss_pred EEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcc
Q 005173 499 RLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAIT 577 (710)
Q Consensus 499 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt 577 (710)
+.|++|++|+++||+++.+|||.+|.|+++..+ +|++.+ +..+++|++||+ +++ ...| +..+++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~~---~~~~------~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EAL---EGKA------YRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GGG---TCSB------CSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hhh---CCCC------ceeEEEECC
Confidence 579999999999999999999999999999764 566655 799999999999 774 3222 779999999
Q ss_pred eEEEEEecHHHHHHHHHHhHHHHHHHHHHHH
Q 005173 578 EVEAFAFVDEDLKFVASQYRKLHCKQLRHVF 608 (710)
Q Consensus 578 ~~ell~L~~edf~~ll~~~p~l~sk~L~~~~ 608 (710)
+|+++.|++++|. |++....++...
T Consensus 70 ~~~v~~i~~~~~~------p~~~~~~~~~l~ 94 (195)
T 3b02_A 70 EAVVQGLEPRAMD------HEALHRVARNLA 94 (195)
T ss_dssp SEEEEEECGGGCC------HHHHHHHHHHHH
T ss_pred cEEEEEEcHHHcC------HHHHHHHHHHHH
Confidence 9999999999997 766655554433
No 58
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.14 E-value=2e-10 Score=140.37 Aligned_cols=114 Identities=14% Similarity=0.211 Sum_probs=98.9
Q ss_pred HHhhhhhhhcccCCCCCHHHHHHHHhhceeEE-eCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCC
Q 005173 469 HLCLDLVRQVPLFDLMDDRMLVAVCERLKPRL-CTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGD 547 (710)
Q Consensus 469 ~l~~~~L~~vplF~~ls~~~l~~l~~~l~~~~-~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd 547 (710)
....+.+.++|.|++++...+..++..+.... ++.|++|++|||.++.+|||.+|.|+++...++. +..+++||
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~-----v~~L~~Gd 407 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV-----VCTLHEGD 407 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE-----EEEEETTC
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc-----eEEecCCC
Confidence 34567788999999999999999999999765 5779999999999999999999999998643332 68899999
Q ss_pred eecchhhhhccCCCCCCCCCCcccEEEEcce-EEEEEecHHHHHHHHHHh
Q 005173 548 FCGEELLTWALDPRPSVILPSSTRTVKAITE-VEAFAFVDEDLKFVASQY 596 (710)
Q Consensus 548 ~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~-~ell~L~~edf~~ll~~~ 596 (710)
+|||.++ +...| |.+||+|.++ |++++++++||.+++.+-
T Consensus 408 ~FGElAL---L~~~P------R~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 408 DFGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp EECGGGG---TCSCB------CSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred cccchhh---ccCCC------eeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 9999988 44444 8999999985 999999999999999874
No 59
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.09 E-value=3.1e-10 Score=111.80 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=76.0
Q ss_pred HHhhceeEEeCCCCeeeecCCCC--CeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCC
Q 005173 492 VCERLKPRLCTPGTCPVREEDPV--NEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPS 568 (710)
Q Consensus 492 l~~~l~~~~~~kge~I~~eGd~~--~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~ 568 (710)
+...++.+.|++|++|+++||++ +.+|||.+|.|+++..+ +|++.+ +..+++|++||+ +++. ..|
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~l~---~~~------ 68 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EALF---GQE------ 68 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HHHH---TCC------
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hhcC---CCC------
Confidence 34667889999999999999999 99999999999998764 677755 799999999999 6542 222
Q ss_pred cccEEEEcceEEEEEecHHHHHHHHHHhHHHHHHHHHH
Q 005173 569 STRTVKAITEVEAFAFVDEDLKFVASQYRKLHCKQLRH 606 (710)
Q Consensus 569 s~~tv~Alt~~ell~L~~edf~~ll~~~p~l~sk~L~~ 606 (710)
+..+++|+++|+++.| +++|. |++....++.
T Consensus 69 ~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~ 99 (202)
T 2zcw_A 69 RIYFAEAATDVRLEPL-PENPD------PELLKDLAQH 99 (202)
T ss_dssp BCSEEEESSCEEEEEC-CSSCC------HHHHHHHHHH
T ss_pred cceEEEEcccEEEEEE-hHhcC------HHHHHHHHHH
Confidence 7789999999999999 98886 6665555443
No 60
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.08 E-value=6e-10 Score=116.55 Aligned_cols=61 Identities=5% Similarity=-0.022 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhccccCC-Ccc-ccchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Q 005173 346 LDKYFYCLWWGLRNLSSLGQN-LFT-STFVWE----INFAIAIAILGLTLFGLLIGNMQTYLQSTTV 406 (710)
Q Consensus 346 ~~~Y~~slyw~l~tlstvG~g-d~~-~~~~~E----~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 406 (710)
+..+..|+||+++++||+||| |+. |.+... ..|++++++.|.++.+..+|.+.+.++....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999 985 665533 8899999999999999999999988865544
No 61
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.04 E-value=2.5e-09 Score=96.02 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q 005173 348 KYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRLE 409 (710)
Q Consensus 348 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~ 409 (710)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.++.+.+.++......+
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~ 110 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999865544433
No 62
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.94 E-value=4.2e-09 Score=91.71 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005173 349 YFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQS 403 (710)
Q Consensus 349 Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~ 403 (710)
|..|+||++.|+||+||||++|.+..+++++++.+++|+.+++++++.++..++.
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6789999999999999999999999999999999999999999999999988754
No 63
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.93 E-value=2.7e-10 Score=100.50 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Q 005173 348 KYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTV 406 (710)
Q Consensus 348 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 406 (710)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++++|.+.+.+.+...
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46679999999999999999999999999999999999999999999999998876543
No 64
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.82 E-value=7.7e-09 Score=87.15 Aligned_cols=54 Identities=15% Similarity=0.480 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005173 348 KYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYL 401 (710)
Q Consensus 348 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l 401 (710)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999875
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.81 E-value=2.5e-10 Score=109.77 Aligned_cols=65 Identities=20% Similarity=0.490 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 005173 347 DKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTVRLEEW 411 (710)
Q Consensus 347 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~~e~ 411 (710)
..|..|+||++.|+||+||||++|.+..+++++++.+++|++++++++|.+.+.+.....+.++.
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~~ 130 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQ 130 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999988766555443
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.70 E-value=3.3e-08 Score=103.68 Aligned_cols=57 Identities=5% Similarity=0.136 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005173 347 DKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQS 403 (710)
Q Consensus 347 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~ 403 (710)
..|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.++.
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357889999999999999999999999999999999999999999999998888754
No 67
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.60 E-value=4.2e-08 Score=104.05 Aligned_cols=58 Identities=12% Similarity=0.233 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005173 348 KYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTT 405 (710)
Q Consensus 348 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~ 405 (710)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+....
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999887554
No 68
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.56 E-value=1.6e-07 Score=98.15 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005173 348 KYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQS 403 (710)
Q Consensus 348 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~ 403 (710)
.|..|+||+++|+||+||||++|.+...++|+++.+++|+.+++++++.+++.+..
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999998865
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.51 E-value=3.2e-07 Score=96.95 Aligned_cols=59 Identities=12% Similarity=0.185 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Q 005173 348 KYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTV 406 (710)
Q Consensus 348 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 406 (710)
.|..|+||++.|+|||||||++|.+...++++++.+++|++++|+++|.+.+.+.....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47789999999999999999999999999999999999999999999999998876543
No 70
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.42 E-value=1.2e-06 Score=92.73 Aligned_cols=59 Identities=12% Similarity=0.212 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhccccCCCcccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Q 005173 348 KYFYCLWWGLRNLSSLGQNLFTST--FVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTTV 406 (710)
Q Consensus 348 ~Y~~slyw~l~tlstvG~gd~~~~--~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~~ 406 (710)
.+..++||++.|+||+||||+.|+ +...++++++.+++|+++.|+.+|.+.+-+..-..
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 151 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKK 151 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 356799999999999999999997 67899999999999999999999999887765444
No 71
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.29 E-value=2.2e-06 Score=98.05 Aligned_cols=53 Identities=13% Similarity=0.318 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 005173 349 YFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGN-MQTYL 401 (710)
Q Consensus 349 Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~-~~~~l 401 (710)
|+.|+||++.|+||+||||++|.+..+++|+++++++|++++++.++. +.+++
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577999999999999999999999999999999999999999999998 54444
No 72
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.18 E-value=2.6e-06 Score=87.83 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005173 348 KYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQ 402 (710)
Q Consensus 348 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~ 402 (710)
.|..|+||+++|+||+||||++|.+...++|+++.+++|+.+++++++.+...+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999987654
No 73
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.16 E-value=9e-07 Score=92.58 Aligned_cols=61 Identities=13% Similarity=0.244 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhccccCCCccccchhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 005173 348 KYFYCLWWGLRNLSSLGQNLFTSTFVWEI------NFAIAIAILGLTLFGLLIGNMQTYLQSTTVRL 408 (710)
Q Consensus 348 ~Y~~slyw~l~tlstvG~gd~~~~~~~E~------~f~i~i~i~G~~lfa~lig~~~~~l~~~~~~~ 408 (710)
.|+.|+||++.|+|||||||++|.+..++ +++++.+++|+.+++++++.+++.+.....+.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999998876 59999999999999999999999887665433
No 74
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.12 E-value=9.5e-06 Score=85.98 Aligned_cols=59 Identities=10% Similarity=0.286 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhccccCCCcccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005173 347 DKYFYCLWWGLRNLSSLGQNLFTST--FVWEINFAIAIAILGLTLFGLLIGNMQTYLQSTT 405 (710)
Q Consensus 347 ~~Y~~slyw~l~tlstvG~gd~~~~--~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~~ 405 (710)
..+..++||++.|+||+||||..|+ +...++++.+.+++|+++.|+++|.+.+-+..-.
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4577899999999999999999864 7889999999999999999999999888776543
No 75
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.02 E-value=3.1e-06 Score=87.22 Aligned_cols=56 Identities=11% Similarity=0.157 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhccccCCCccccchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005173 349 YFYCLWWGLRNLSSLGQNLFTSTFVW-------EINFAIAIAILGLTLFGLLIGNMQTYLQST 404 (710)
Q Consensus 349 Y~~slyw~l~tlstvG~gd~~~~~~~-------E~~f~i~i~i~G~~lfa~lig~~~~~l~~~ 404 (710)
|+.|+||++.|+|||||||+.|.+.. -++++++.+++|+.+++++++.+.++++..
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~ 264 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELK 264 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999884 499999999999999999999999887654
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.85 E-value=1.1e-06 Score=93.69 Aligned_cols=56 Identities=14% Similarity=0.491 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005173 349 YFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQST 404 (710)
Q Consensus 349 Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~~ 404 (710)
|..|+||++.|+||+||||++|.+..+++++++++++|+++++++++.+.+.+.+.
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999999998877653
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.80 E-value=0.00076 Score=67.57 Aligned_cols=74 Identities=8% Similarity=0.095 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccccccCCCchhhHHHHHHHHHHHHHHHHHHhhceeEEcCCCcccCCCeEee
Q 005173 87 RWNKIFLVACLVSLFVDPLFFYLPEAKKNACINVSVPLEIILTVIRSLADAFYFVRIFIRFRTAFVAPSSRVLGRGDLVI 166 (710)
Q Consensus 87 ~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~c~~~~~~~~~~~~~i~~~~D~~f~~Di~l~F~tay~~~~s~~~~~G~lV~ 166 (710)
.++.+++++.+++++..-+.- .| .+......+..++.++-++|.+|+++++... |
T Consensus 13 ~f~~~i~~~I~ln~i~l~~~~-~~---------~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~-----------~---- 67 (229)
T 4dxw_A 13 IFQFTVVSIIILNAVLIGATT-YE---------LDPLFLETIHLLDYGITIFFVIEILIRFIGE-----------K---- 67 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTCC-SS---------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred hHHHHHHHHHHHHHHHHHHcc-CC---------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------C----
Confidence 467777777777776654432 11 1222345678899999999999999998642 1
Q ss_pred ChHHHHHHHhhh-hhHhHhhhcCC
Q 005173 167 DPSKISSRYLRK-DFWLDIMAAQP 189 (710)
Q Consensus 167 d~~~Ia~rYl~~-~F~iDlls~lP 189 (710)
-.++|+++ |-++|++.++|
T Consensus 68 ----~~~~y~~~~wni~D~~~v~~ 87 (229)
T 4dxw_A 68 ----QKADFFKSGWNIFDTVIVAI 87 (229)
T ss_dssp -----------CHHHHHHHHHHHH
T ss_pred ----chhHHhcCCcHHHHHHHHHH
Confidence 13578887 88999876654
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.52 E-value=0.00036 Score=65.06 Aligned_cols=78 Identities=17% Similarity=0.107 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccccccCCCchhhHHHHHHHHHHHHHHHHHHhhceeEEcCCCcccCCCeEee
Q 005173 87 RWNKIFLVACLVSLFVDPLFFYLPEAKKNACINVSVPLEIILTVIRSLADAFYFVRIFIRFRTAFVAPSSRVLGRGDLVI 166 (710)
Q Consensus 87 ~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~c~~~~~~~~~~~~~i~~~~D~~f~~Di~l~F~tay~~~~s~~~~~G~lV~ 166 (710)
.|+.+++++.++++++.-+..+.+. +......+..++.++-++|.+|+++++..+ |+
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~i---------~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a---~~----------- 78 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQL---------SGEYLVRLYLVDLILVIILWADYAYRAYKS---GD----------- 78 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TC-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhh---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHC---Cc-----------
Confidence 3777777777777766655533321 112344678899999999999999999764 22
Q ss_pred ChHHHHHHHhhhhhHhHhhhcCCHHHH
Q 005173 167 DPSKISSRYLRKDFWLDIMAAQPIPQL 193 (710)
Q Consensus 167 d~~~Ia~rYl~~~F~iDlls~lPl~~i 193 (710)
.++|+++ =++|++|++|+...
T Consensus 79 -----k~~f~~~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 79 -----PAGYVKK-TLYEIPALVPAGLL 99 (147)
T ss_dssp -----HHHHHHH-STTTHHHHCCHHHH
T ss_pred -----HHHHHHH-HHHHHHHHHHHHHH
Confidence 3579987 58999999998644
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=97.28 E-value=0.0013 Score=60.11 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccccccCCCchhhHHHHHHHHHHHHHHHHHHhhceeEEcCCCcccCCCeEee
Q 005173 87 RWNKIFLVACLVSLFVDPLFFYLPEAKKNACINVSVPLEIILTVIRSLADAFYFVRIFIRFRTAFVAPSSRVLGRGDLVI 166 (710)
Q Consensus 87 ~W~~~~li~~~~~~~~~Pl~~~~~~~~~~~c~~~~~~~~~~~~~i~~~~D~~f~~Di~l~F~tay~~~~s~~~~~G~lV~ 166 (710)
.++.+++++.+++++..-+..+-+ .+......+..++.++-++|.+|+++++..+ ++
T Consensus 7 ~f~~~i~~lIlls~~~~~~et~~~---------~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~~----------- 63 (132)
T 1ors_C 7 LVELGVSYAALLSVIVVVVEYTMQ---------LSGEYLVRLYLVDLILVIILWADYAYRAYKS---GD----------- 63 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC---------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhchh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-----------
Confidence 467777777777766655542211 1222345678899999999999999999763 21
Q ss_pred ChHHHHHHHhhhhhHhHhhhcCCHHHH
Q 005173 167 DPSKISSRYLRKDFWLDIMAAQPIPQL 193 (710)
Q Consensus 167 d~~~Ia~rYl~~~F~iDlls~lPl~~i 193 (710)
.++|++ |=++|+++++|+...
T Consensus 64 -----~~~y~~-~niiDllailp~~~~ 84 (132)
T 1ors_C 64 -----PAGYVK-KTLYEIPALVPAGLL 84 (132)
T ss_dssp -----TTTTTT-TCGGGTGGGSCHHHH
T ss_pred -----HHHHHH-HHHHHHHHHHHHHHH
Confidence 257999 999999999998543
No 80
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=66.60 E-value=25 Score=30.13 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=47.3
Q ss_pred ceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEE
Q 005173 496 LKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKA 575 (710)
Q Consensus 496 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~A 575 (710)
+....+++|..+-.--.+..++++|++|.+++.. +++ ...+++||.+--.. . ....+++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ip~-------~-------~~H~~~~ 96 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--DGA-----QRRLHQGDLLYLGA-------G-------AAHDVNA 96 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--TTE-----EEEECTTEEEEECT-------T-------CCEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE--CCE-----EEEECCCCEEEECC-------C-------CcEEEEe
Confidence 4455678898886666667899999999998865 333 36789999864321 1 3356788
Q ss_pred cceEEEEEe
Q 005173 576 ITEVEAFAF 584 (710)
Q Consensus 576 lt~~ell~L 584 (710)
.++++++.+
T Consensus 97 ~~~~~~~~~ 105 (114)
T 3fjs_A 97 ITNTSLLVT 105 (114)
T ss_dssp SSSEEEEEE
T ss_pred CCCcEEEEE
Confidence 888776543
No 81
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=63.23 E-value=27 Score=34.01 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=52.8
Q ss_pred hceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEE
Q 005173 495 RLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVK 574 (710)
Q Consensus 495 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~ 574 (710)
.+....+.+|+.+-..--+.+.+.+|++|.+++... |+ ...+++||++=- ++ .....++
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~~~~-------p~-------~~~H~~~ 96 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NN-----KKTISNGDFLEI-------TA-------NHNYSIE 96 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SC-----EEEEETTEEEEE-------CS-------SCCEEEE
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CE-----EEEECCCCEEEE-------CC-------CCCEEEE
Confidence 345566899999988888899999999999998753 33 367899987632 21 1346889
Q ss_pred EcceEEEEEe
Q 005173 575 AITEVEAFAF 584 (710)
Q Consensus 575 Alt~~ell~L 584 (710)
|.+++.++.+
T Consensus 97 a~~~~~~l~i 106 (227)
T 3rns_A 97 ARDNLKLIEI 106 (227)
T ss_dssp ESSSEEEEEE
T ss_pred ECCCcEEEEE
Confidence 9999999987
No 82
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=62.30 E-value=33 Score=28.92 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=42.5
Q ss_pred EEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcce
Q 005173 499 RLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITE 578 (710)
Q Consensus 499 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~ 578 (710)
..+.+|..+-.-..+..++++|++|.+.+.. +++ ...+.+||.+=-. +. ....+.+.++
T Consensus 43 ~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~i~-------~~-------~~H~~~~~~~ 101 (114)
T 2ozj_A 43 FSFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ-----KIDLVPEDVLMVP-------AH-------KIHAIAGKGR 101 (114)
T ss_dssp EEEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE-----EEEECTTCEEEEC-------TT-------CCBEEEEEEE
T ss_pred EEECCCCccccEECCCCeEEEEEeCEEEEEE--CCE-----EEEecCCCEEEEC-------CC-------CcEEEEeCCC
Confidence 3456777665455567899999999998764 333 3678999976322 11 2245566677
Q ss_pred EEEEEe
Q 005173 579 VEAFAF 584 (710)
Q Consensus 579 ~ell~L 584 (710)
+.++.+
T Consensus 102 ~~~~~i 107 (114)
T 2ozj_A 102 FKMLQI 107 (114)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 777654
No 83
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=56.19 E-value=56 Score=27.35 Aligned_cols=67 Identities=12% Similarity=0.042 Sum_probs=44.3
Q ss_pred eeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEc
Q 005173 497 KPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAI 576 (710)
Q Consensus 497 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Al 576 (710)
....+.+|..+-.--.+..++++|++|.+.+.. +++ ...+.+||.+=-. +. ....+.+.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~~~ 95 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV-----IKVLTAGDSFFVP-------PH-------VDHGAVCP 95 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTCEEEEC-------TT-------CCEEEEES
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE-----EEEeCCCCEEEEC-------cC-------CceeeEeC
Confidence 445577887654333446789999999998865 333 3678999985322 11 23456777
Q ss_pred ceEEEEEe
Q 005173 577 TEVEAFAF 584 (710)
Q Consensus 577 t~~ell~L 584 (710)
++++++.+
T Consensus 96 ~~~~~l~v 103 (116)
T 2pfw_A 96 TGGILIDT 103 (116)
T ss_dssp SCEEEEEE
T ss_pred CCcEEEEE
Confidence 78887766
No 84
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=56.11 E-value=11 Score=25.02 Aligned_cols=21 Identities=24% Similarity=0.119 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 005173 614 QWRTWAACFIQAAWFRYKRRK 634 (710)
Q Consensus 614 ~~~~~~~~~~q~~~~r~~~R~ 634 (710)
+-++|++..||++|++|.-|.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr 23 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQR 23 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 347799999999999998654
No 85
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=55.97 E-value=11 Score=44.09 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005173 347 DKYFYCLWWGLRNLSSLGQNLFTSTFVWEINFAIAIAILGLTLFGLLIGNMQTYLQS 403 (710)
Q Consensus 347 ~~Y~~slyw~l~tlstvG~gd~~~~~~~E~~f~i~i~i~G~~lfa~lig~~~~~l~~ 403 (710)
.....++|+++.++...| ++..|.....+++.++++++++++.+.-.+++.++|..
T Consensus 562 ~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 562 FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346679999999998777 57799999999999999999999999999999999964
No 86
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=55.79 E-value=10 Score=24.24 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 005173 615 WRTWAACFIQAAWFRYKRR 633 (710)
Q Consensus 615 ~~~~~~~~~q~~~~r~~~R 633 (710)
-+++++..||.+|++|..|
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~ 22 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999765
No 87
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=54.51 E-value=32 Score=29.89 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=33.5
Q ss_pred eEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 498 PRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 498 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
...+.+|..+-.. ...+++++|++|.+++.. +|+ ...+++||.+-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~-----~~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGE-----TVTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 3457788766443 377899999999999876 444 36799999874
No 88
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=53.55 E-value=55 Score=27.38 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=44.7
Q ss_pred ceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEE
Q 005173 496 LKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKA 575 (710)
Q Consensus 496 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~A 575 (710)
+....+.+|..+-.--....++++|++|.+.+.. +++ ...+.+||.+--. +. ....+.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~~ 100 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQE-----TYRVAEGQTIVMP-------AG-------IPHALYA 100 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEEC-------TT-------SCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEEEC-------CC-------CCEEEEE
Confidence 3445577888765444446799999999998764 333 3678999987422 11 2345677
Q ss_pred cceEEEEEe
Q 005173 576 ITEVEAFAF 584 (710)
Q Consensus 576 lt~~ell~L 584 (710)
.++++++.+
T Consensus 101 ~~~~~~~~v 109 (115)
T 1yhf_A 101 VEAFQMLLV 109 (115)
T ss_dssp SSCEEEEEE
T ss_pred CCCceEEEE
Confidence 777777665
No 89
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=49.43 E-value=21 Score=33.44 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=27.8
Q ss_pred CCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 513 PVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 513 ~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
+.++++++++|.+.+-..++|+.. ...+++||+|=
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEE
Confidence 568999999999999887766322 47799999883
No 90
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=46.01 E-value=57 Score=27.39 Aligned_cols=47 Identities=19% Similarity=0.197 Sum_probs=33.4
Q ss_pred ceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 496 LKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 496 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
+....+.+|+.-.. .+..++++|++|.+.+... +++ ...+++||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~-~g~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTE-DGK-----KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEET-TCC-----EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEEC-CCC-----EEEECCCCEEE
Confidence 33556777776544 4468999999999998753 243 36799999874
No 91
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=44.45 E-value=60 Score=27.66 Aligned_cols=48 Identities=21% Similarity=0.213 Sum_probs=34.9
Q ss_pred ceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 496 LKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 496 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
+....+.+|..+-.--.+..++++|++|.+++.. +++ ...+.+||.+-
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE-----TRVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 4455678888775554556899999999998865 333 36789999863
No 92
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=44.27 E-value=83 Score=29.29 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=33.1
Q ss_pred EEeCCCCeeee---cCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 499 RLCTPGTCPVR---EEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 499 ~~~~kge~I~~---eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
..+.||...-. -..+..++++|++|.+++...+++... ...+++||.+-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 45677776542 233457999999999998864432211 46899999874
No 93
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=41.80 E-value=38 Score=29.02 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=33.3
Q ss_pred ceeEEeCCCCeeeecCCCC-CeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 496 LKPRLCTPGTCPVREEDPV-NEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 496 l~~~~~~kge~I~~eGd~~-~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
+....+.+|..+-.--.+. .++++|++|.+++... +++ ...+++||++-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~~~-----~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG-NGI-----VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS-TTC-----EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC-CCe-----EEEeCCCCEEE
Confidence 4445678888765444443 6899999999987542 343 36789999763
No 94
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=40.95 E-value=77 Score=29.67 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=49.7
Q ss_pred HHHHHHHhhcee----EEeCCCCeeee-cC----------CCCCeEEEEEeeEEEEEEecCC---ceeeeeeEEeCCCCe
Q 005173 487 RMLVAVCERLKP----RLCTPGTCPVR-EE----------DPVNEMLFIVRGHLDSYTTGGG---RTGFFNSCRIGPGDF 548 (710)
Q Consensus 487 ~~l~~l~~~l~~----~~~~kge~I~~-eG----------d~~~~lyfI~~G~v~v~~~~~g---~~~~~~~~~l~~Gd~ 548 (710)
+-+++..+.++| +..-.+++++. -| ++.++++++++|.+.+-..++| .+ +....+++||+
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~--~~dv~i~eGdm 89 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPK--FIDIIINEGDS 89 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCE--EEEEEECTTEE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccc--eeeEEECCCCE
Confidence 344555566666 44333555432 22 3456999999999999887755 11 12467999998
Q ss_pred ecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHH
Q 005173 549 CGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDE 587 (710)
Q Consensus 549 fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~e 587 (710)
|=-- +. -..+-++-.++..+.+.+.
T Consensus 90 fllP-------~g-------vpHsP~r~~e~v~lviErk 114 (176)
T 1zvf_A 90 YLLP-------GN-------VPHSPVRFADTVGIVVEQD 114 (176)
T ss_dssp EEEC-------TT-------CCEEEEECTTCEEEEEEEC
T ss_pred EEcC-------CC-------CCcCCcccCCcEEEEEEec
Confidence 8322 11 1123344567777776543
No 95
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=38.83 E-value=1.3e+02 Score=24.49 Aligned_cols=67 Identities=12% Similarity=0.180 Sum_probs=40.8
Q ss_pred eEEeCCCCeeeecCCCC-CeE-EEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEE
Q 005173 498 PRLCTPGTCPVREEDPV-NEM-LFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKA 575 (710)
Q Consensus 498 ~~~~~kge~I~~eGd~~-~~l-yfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~A 575 (710)
...+.+|..+-.--.+. .++ ++|++|.+.+...+ ++ ...+.+||.+--.. . ....+.+
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ip~-------~-------~~H~~~~ 96 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG-DA-----VIPAPRGAVLVAPI-------S-------TPHGVRA 96 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG-GC-----EEEECTTEEEEEET-------T-------SCEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC-CE-----EEEECCCCEEEeCC-------C-------CcEEEEE
Confidence 34567887764433332 466 89999999876532 23 36789999763221 1 2345667
Q ss_pred cceEEEEEe
Q 005173 576 ITEVEAFAF 584 (710)
Q Consensus 576 lt~~ell~L 584 (710)
.+++.++.+
T Consensus 97 ~~~~~~l~~ 105 (110)
T 2q30_A 97 VTDMKVLVT 105 (110)
T ss_dssp SSSEEEEEE
T ss_pred cCCcEEEEE
Confidence 777765543
No 96
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=38.05 E-value=37 Score=31.71 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=36.0
Q ss_pred ceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 496 LKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 496 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
+....+.||.....--...+++++|++|.+++...+.+... ...+++||.+-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~---~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE---EEEECCCCEEE
Confidence 44556788877654433458999999999988765433221 46899999874
No 97
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=36.82 E-value=65 Score=29.04 Aligned_cols=64 Identities=8% Similarity=-0.025 Sum_probs=38.9
Q ss_pred ecCCCCCeEEEEEeeEEEEEEecCCc-eeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecH
Q 005173 509 REEDPVNEMLFIVRGHLDSYTTGGGR-TGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVD 586 (710)
Q Consensus 509 ~eGd~~~~lyfI~~G~v~v~~~~~g~-~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~ 586 (710)
..-+..|++|+|++|.+.+...+++. ..-.....+++|+++--- +. -..+-.|.++|.++.+..
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVP--------kG------veH~p~a~~e~~vLLiEp 109 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVP--------AE------CWFYSITQKDTKMMYVQD 109 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEEC--------TT------CEEEEEECTTCEEEEEEE
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeC--------CC------ccCcccCCCceEEEEEEe
Confidence 34456799999999999988764210 000114678999987432 11 123455667777776653
No 98
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=35.50 E-value=60 Score=26.77 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=33.1
Q ss_pred eeEEeCCCCeeeec--CCC-CCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 497 KPRLCTPGTCPVRE--EDP-VNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 497 ~~~~~~kge~I~~e--Gd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
....+.+|..+-.. -.. ..++++|++|.+.+.. +++ ...+.+||.+-
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 73 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV--DGH-----TQALQAGSLIA 73 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 34557888876543 334 6799999999998765 333 36789999763
No 99
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=34.64 E-value=70 Score=25.73 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=32.1
Q ss_pred eeEEeCCCCeeeecCCC-CCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 497 KPRLCTPGTCPVREEDP-VNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 497 ~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
....+.+|..+-.--.. ..++++|++|.+.+.. +++ ...+.+||.+=
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~--~~~-----~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV--GEE-----EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 34457788876443333 3579999999998765 233 36789999863
No 100
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=34.58 E-value=90 Score=31.53 Aligned_cols=60 Identities=10% Similarity=0.171 Sum_probs=40.6
Q ss_pred CCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEecHH
Q 005173 511 EDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFVDE 587 (710)
Q Consensus 511 Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~~e 587 (710)
-+..++++++++|.+.+-..++|+- .-..+++|++|=- |+. -..+=++-++|..+.|.+.
T Consensus 48 ~~~~dE~FyqlkG~m~l~~~d~g~~---~~V~i~eGemfll--------P~g------v~HsP~r~~et~gLviE~~ 107 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLRVLEQGKH---RDVVIRQGEIFLL--------PAR------VPHSPQRFANTVGLVVERR 107 (286)
T ss_dssp ECSSCEEEEEEESCEEEEEEETTEE---EEEEECTTEEEEE--------CTT------CCEEEEECTTCEEEEEEEC
T ss_pred CCCCCeEEEEEeCeEEEEEEeCCce---eeEEECCCeEEEe--------CCC------CCcCCcccCCeEEEEEeec
Confidence 3457899999999999988776632 2467899998732 211 1234455677888877743
No 101
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=33.93 E-value=1.1e+02 Score=29.63 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=47.6
Q ss_pred ceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEE
Q 005173 496 LKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKA 575 (710)
Q Consensus 496 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~A 575 (710)
+....+.+|+.+-..-.+.+++++|++|.+++.. +|+ ...+.+||.+=-.+- ....+.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~-----~~~l~~Gd~i~ip~~--------------~~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGK-----PFIVKKGESAVLPAN--------------IPHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTE-----EEEEETTEEEEECTT--------------SCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCE-----EEEECCCCEEEECCC--------------CcEEEEe
Confidence 4456689999886655667789999999998864 333 367899998642211 3356777
Q ss_pred -cceEEEEEe
Q 005173 576 -ITEVEAFAF 584 (710)
Q Consensus 576 -lt~~ell~L 584 (710)
.++++++.+
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 888877653
No 102
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=32.86 E-value=35 Score=27.99 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=32.0
Q ss_pred eeEEeCCCCeeeecCCCCC-eEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 497 KPRLCTPGTCPVREEDPVN-EMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 497 ~~~~~~kge~I~~eGd~~~-~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
....+.||...-.--.+.. ++++|++|.+++...++.+ ...+.+||.+-
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~-----~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSV-----TSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEE-----EEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCE-----EEEEcCCCEEE
Confidence 3455778876532223344 5999999999987533212 36799999874
No 103
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=31.74 E-value=30 Score=30.35 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=30.4
Q ss_pred EeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecc
Q 005173 500 LCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGE 551 (710)
Q Consensus 500 ~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 551 (710)
...+|..-....+ .+++++|++|.+.+... +|+ ...+++||.+--
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~-----~~~l~~GD~~~i 99 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGT-----VHAVKAGDAFIM 99 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCC-----EEEEETTCEEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCe-----EEEECCCCEEEE
Confidence 3556665543322 27999999999998753 444 367899998753
No 104
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=31.29 E-value=72 Score=31.02 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=25.3
Q ss_pred CCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 512 DPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 512 d~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
.+.+++|+|++|.++....++ + ...+++||.+=
T Consensus 150 Hp~EEiy~VLsG~~e~~v~~g-~-----~~~l~pGd~v~ 182 (217)
T 4b29_A 150 HLPEELYSVVSGRALFHLRNA-P-----DLMLEPGQTRF 182 (217)
T ss_dssp CSSEEEEEEEEECEEEEETTS-C-----CEEECTTCEEE
T ss_pred CCCceEEEEEeCCEEEEECCC-C-----EEecCCCCEEE
Confidence 567899999999998865433 3 36789999874
No 105
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=31.08 E-value=1.1e+02 Score=29.03 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=35.5
Q ss_pred ceeEEeCCCCeeeecCCC-CCeEEEEEeeEEEEEEecCC---ceeeeeeEEeCCCCeec
Q 005173 496 LKPRLCTPGTCPVREEDP-VNEMLFIVRGHLDSYTTGGG---RTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 496 l~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g---~~~~~~~~~l~~Gd~fG 550 (710)
+....+.+|...-.--.+ .+++++|++|.+++...+++ .+.+ ...+.+||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~--~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY--SRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEE--EEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEE--EEEECCCCEEE
Confidence 445567888765433333 57999999999998765432 2211 36789999874
No 106
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=31.08 E-value=54 Score=30.69 Aligned_cols=48 Identities=10% Similarity=0.161 Sum_probs=32.6
Q ss_pred ceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCee
Q 005173 496 LKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFC 549 (710)
Q Consensus 496 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 549 (710)
+....+.||...-.--....+..+|++|++++...+ |+ ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge-----~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GA-----KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GC-----EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-Ce-----EEEECCCCEE
Confidence 444557777654333334467889999999987532 33 3679999998
No 107
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=30.93 E-value=66 Score=29.09 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=33.4
Q ss_pred eeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCce--eeeeeEEeCCCCeec
Q 005173 497 KPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRT--GFFNSCRIGPGDFCG 550 (710)
Q Consensus 497 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~--~~~~~~~l~~Gd~fG 550 (710)
....+.+|..+-.--....++++|++|.+.+...++++. .-.....+.+||++-
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEE
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEE
Confidence 344577877653222345789999999999887552210 000146789999864
No 108
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=30.40 E-value=83 Score=28.88 Aligned_cols=48 Identities=21% Similarity=0.260 Sum_probs=33.6
Q ss_pred ceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 496 LKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 496 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
+....+.+|..+-..-....++++|++|.+.+.. +++ ...+.+||++-
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL--DDR-----VEPLTPLDCVY 105 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 3345567777664444457899999999998764 333 36789999874
No 109
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=30.12 E-value=87 Score=29.66 Aligned_cols=66 Identities=15% Similarity=0.104 Sum_probs=46.7
Q ss_pred hhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEE
Q 005173 494 ERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTV 573 (710)
Q Consensus 494 ~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv 573 (710)
..+....+.+|..+-.-..+..++.+|++|.++ ++. ..+.+||++=.- +. +..+.
T Consensus 125 ~~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~-------~~~~~Gd~~~~p-------~g-------~~H~p 179 (195)
T 2q1z_B 125 AIARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DET-------DRFGAGDIEIAD-------QE-------LEHTP 179 (195)
T ss_dssp SEEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSS-------SEEETTCEEEEC-------SS-------CCCCC
T ss_pred cEEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCc-------EEECCCeEEEeC-------cC-------CccCC
Confidence 345677799999998888889999999999965 222 457899986432 11 23345
Q ss_pred EE--cceEEEEEe
Q 005173 574 KA--ITEVEAFAF 584 (710)
Q Consensus 574 ~A--lt~~ell~L 584 (710)
.+ .++|.++..
T Consensus 180 ~a~~~~gc~~l~~ 192 (195)
T 2q1z_B 180 VAERGLDCICLAA 192 (195)
T ss_dssp EECSSSCEEEEEE
T ss_pred EeCCCCCEEEEEE
Confidence 55 678887765
No 110
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=29.45 E-value=93 Score=25.04 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=34.1
Q ss_pred CCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEEEEec
Q 005173 514 VNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEAFAFV 585 (710)
Q Consensus 514 ~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~ell~L~ 585 (710)
..++++|++|.+.+... ++ ...+.+||.+-- .+. ....+.+.+++.++.++
T Consensus 50 ~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~i-------p~~-------~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFR--DQ-----NITLQAGEMYVI-------PKG-------VEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEECS--SC-----EEEEETTEEEEE-------CTT-------CCBEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC--CE-----EEEEcCCCEEEE-------CCC-------CeEeeEcCCCCEEEEEE
Confidence 37999999999987642 32 366889997632 211 23455666788888775
No 111
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=28.45 E-value=81 Score=28.26 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=35.8
Q ss_pred hceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecc
Q 005173 495 RLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGE 551 (710)
Q Consensus 495 ~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 551 (710)
.+....+++|..+-.-..+..+.++|++|..+. .+|...- -..+++||++=.
T Consensus 45 ~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~---~~g~~~~--~~~~~~Gd~~~~ 96 (145)
T 2o1q_A 45 WTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV---RGGKAAG--GDTAIAPGYGYE 96 (145)
T ss_dssp EEEEEEECTTEEECCEEESSCEEEEEEEEEEEE---TTCGGGT--SEEEESSEEEEE
T ss_pred EEEEEEECCCCCCCccCCCCCEEEEEEEeEEEE---cCCCEec--ceEeCCCEEEEE
Confidence 355677899998877666678889999999873 2332210 146788888754
No 112
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=27.52 E-value=44 Score=29.20 Aligned_cols=45 Identities=20% Similarity=0.391 Sum_probs=31.2
Q ss_pred EeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecc
Q 005173 500 LCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGE 551 (710)
Q Consensus 500 ~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 551 (710)
..++|..-... +..++++.|++|.+.+... +|. ...+++||.+--
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~d-dG~-----~~~l~aGD~~~~ 92 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQA-DAD-----PVKIGPGSIVSI 92 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEET-TCC-----CEEECTTEEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEeC-CCe-----EEEECCCCEEEE
Confidence 45666655443 3345999999999998754 444 367899998753
No 113
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=27.31 E-value=1.4e+02 Score=27.23 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=24.3
Q ss_pred CCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 513 PVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 513 ~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
..+++++|++|.+++.. +|+ ...+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~-----~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR-----KVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 45789999999999874 444 46799999873
No 114
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=26.24 E-value=81 Score=26.48 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=29.6
Q ss_pred EEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 499 RLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 499 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
..+.+|..+-.--....++++|++|.+.+.. +++. ...+.+||.+-
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~~----~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL--EDQE----PHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEE--TTSC----CEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEE--CCEE----EEEeCCCCEEE
Confidence 3456666543222346789999999998865 2322 12789999763
No 115
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=25.90 E-value=97 Score=25.51 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=39.4
Q ss_pred CCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcceEEE
Q 005173 502 TPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAITEVEA 581 (710)
Q Consensus 502 ~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt~~el 581 (710)
.+|+.....-+...++++|++|.+++...+ ++ ...+.+||.+--. +. ....+.+.+++.+
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ip-------~~-------~~H~~~~~~~~~~ 95 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GG-----SMTIREGEMAVVP-------KS-------VSHRPRSENGCSL 95 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEETT-SC-----EEEECTTEEEEEC-------TT-------CCEEEEEEEEEEE
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEECC-Cc-----EEEECCCCEEEEC-------CC-------CcEeeEeCCCeEE
Confidence 445443333332389999999999887533 23 3679999987322 11 1234445567888
Q ss_pred EEecHHH
Q 005173 582 FAFVDED 588 (710)
Q Consensus 582 l~L~~ed 588 (710)
+.+....
T Consensus 96 l~i~~~~ 102 (107)
T 2i45_A 96 VLIELSD 102 (107)
T ss_dssp EEEECC-
T ss_pred EEEECCC
Confidence 7776443
No 116
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=25.34 E-value=1.2e+02 Score=31.38 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=35.2
Q ss_pred eeEEeCCCCeeeecCCC-CCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeec
Q 005173 497 KPRLCTPGTCPVREEDP-VNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 497 ~~~~~~kge~I~~eGd~-~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 550 (710)
....+.+|...-.--.. .+++++|++|.+++...+ +|+.. ...+++||++-
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE---IADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE---EEEEcCCCEEE
Confidence 34557788865433334 789999999999988755 33222 36799999764
No 117
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=24.27 E-value=68 Score=34.20 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=35.8
Q ss_pred eeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecc
Q 005173 497 KPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGE 551 (710)
Q Consensus 497 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 551 (710)
....+.+|+.+-.--....++|||++|+-.... .+|+ ...+++||++--
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~-v~G~-----~~~~~~GD~i~~ 174 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTI-VDGH-----KVELGANDFVLT 174 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEE-ETTE-----EEEECTTCEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEE-ECCE-----EEEEcCCCEEEE
Confidence 667789999886655566789999999865433 3444 367899998743
No 118
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=23.84 E-value=1.2e+02 Score=31.69 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=36.2
Q ss_pred ceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeec
Q 005173 496 LKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 496 l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 550 (710)
+....+.+|..+-.--.+..++++|++|.+++...+ +|+.. ...+.+||++=
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~---~~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF---IDDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE---EEEeCCCCEEE
Confidence 344567888866433334789999999999988765 35431 24789999763
No 119
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=23.21 E-value=1.3e+02 Score=30.22 Aligned_cols=68 Identities=9% Similarity=0.125 Sum_probs=43.9
Q ss_pred eEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcc
Q 005173 498 PRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAIT 577 (710)
Q Consensus 498 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt 577 (710)
...+.||..--......+++.||++|.+++...+ |+ ...+++||++=..+ . ...+++..+
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~-g~-----~~~L~~Gds~y~p~-------~-------~~H~~~N~~ 133 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTS-SS-----SKKLTVDSYAYLPP-------N-------FHHSLDCVE 133 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CC-----CEEECTTEEEEECT-------T-------CCCEEEESS
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECC-Cc-----EEEEcCCCEEEECC-------C-------CCEEEEeCC
Confidence 4457777764223344689999999999986432 33 36789999874321 1 234555568
Q ss_pred eEEEEEec
Q 005173 578 EVEAFAFV 585 (710)
Q Consensus 578 ~~ell~L~ 585 (710)
+++++.+.
T Consensus 134 ~Ar~l~V~ 141 (266)
T 4e2q_A 134 SATLVVFE 141 (266)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEE
Confidence 88888885
No 120
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=22.95 E-value=79 Score=28.79 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=30.8
Q ss_pred EEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 499 RLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 499 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
..+.+|..+-..-....++++|++|.+++.. +++ ...+.+||++=
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~-----~~~l~~Gd~i~ 93 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET-----ISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3456666554444456789999999998864 333 36789999763
No 121
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=22.90 E-value=78 Score=29.15 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=31.2
Q ss_pred EEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 499 RLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 499 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
..+.+|..+-.--....++++|++|.+++.. +++ ...+.+||++=
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~-----~~~l~~GD~i~ 102 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA-----VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3456666654444456789999999998754 333 36789999874
No 122
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=22.71 E-value=1.6e+02 Score=30.34 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=36.3
Q ss_pred ceeEEeCCCCeeeecCCCC-CeEEEEEeeEEEEEEec-CCceeeeeeEEeCCCCeec
Q 005173 496 LKPRLCTPGTCPVREEDPV-NEMLFIVRGHLDSYTTG-GGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 496 l~~~~~~kge~I~~eGd~~-~~lyfI~~G~v~v~~~~-~g~~~~~~~~~l~~Gd~fG 550 (710)
+....+.+|..+-..-.+. .++++|++|.+++...+ +|+. . ...+++||++-
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~-~--~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKA-S--VSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCE-E--EEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcE-E--EEEECCCCEEE
Confidence 4456688888765443444 89999999999987643 3431 1 36789999874
No 123
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=21.77 E-value=1.1e+02 Score=27.89 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=31.7
Q ss_pred eeEEeCCCCeee--ecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 497 KPRLCTPGTCPV--REEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 497 ~~~~~~kge~I~--~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
....+.+|.... ..-...+++++|++|.+++... ++ ...+.+||.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~-----~~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QG-----EHPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CE-----EEEeCCCCEEE
Confidence 345577887542 2223336999999999988753 33 36789999864
No 124
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=21.72 E-value=1.3e+02 Score=29.38 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=37.1
Q ss_pred hhceeEEeCCCCeeee-cCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecc
Q 005173 494 ERLKPRLCTPGTCPVR-EEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGE 551 (710)
Q Consensus 494 ~~l~~~~~~kge~I~~-eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 551 (710)
..+....++||..+-. +-...++.++|++|++.+.. +|+ ...+.+||++--
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~-----~~~l~~GD~~~~ 216 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EEN-----YYPVTAGDIIWM 216 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTE-----EEEEETTCEEEE
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCE-----EEEcCCCCEEEE
Confidence 3455667899988754 44556799999999998753 444 367999998753
No 125
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=21.68 E-value=1.5e+02 Score=26.27 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=31.9
Q ss_pred eeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 497 KPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 497 ~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
....+.+|..+-.---...++++|++|.+.+... +. + ...+.+||.+-
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~-~~-~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQER-GK-P----ARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEET-TS-C----CEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEEC-CE-E----EEEECCCCEEE
Confidence 3455677776643334457999999999988643 22 1 15688999874
No 126
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=21.67 E-value=84 Score=33.70 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=38.9
Q ss_pred hhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 494 ERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 494 ~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
-.+....+.||..+..--...+++++|++|.+.+...+.+... ...+++||++-
T Consensus 49 ~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 102 (416)
T 1uij_A 49 YRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQR 102 (416)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEEE
T ss_pred EEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEEE
Confidence 3455677899987766555678999999999988754433221 46789999874
No 127
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=21.42 E-value=96 Score=26.20 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=24.4
Q ss_pred CCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 512 DPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 512 d~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
...+++++|++|.+++...++.. ...+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~-----~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTA-----PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSS-----CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEE-----EEEECCCCEEE
Confidence 45679999999999987533221 15689999864
No 128
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=21.35 E-value=2.7e+02 Score=28.87 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=48.7
Q ss_pred eEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcc
Q 005173 498 PRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAIT 577 (710)
Q Consensus 498 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt 577 (710)
...+++|...-.--.+..++|+|++|..++.. +|+ ...+.+||.|---.- ....+.+.+
T Consensus 272 ~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v--~~~-----~~~~~~GD~~~vP~~--------------~~H~~~n~e 330 (354)
T 2d40_A 272 LQLLPKGFASRVARTTDSTIYHVVEGSGQVII--GNE-----TFSFSAKDIFVVPTW--------------HGVSFQTTQ 330 (354)
T ss_dssp EEEECTTCBCCCBEESSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEEECTT--------------CCEEEEEEE
T ss_pred EEEECCCCCCCceecCCcEEEEEEeCeEEEEE--CCE-----EEEEcCCCEEEECCC--------------CeEEEEeCC
Confidence 45677777654444456699999999988876 443 467899998743221 234556668
Q ss_pred eEEEEEecHHHHH
Q 005173 578 EVEAFAFVDEDLK 590 (710)
Q Consensus 578 ~~ell~L~~edf~ 590 (710)
++.++++.-.-+.
T Consensus 331 ~~~l~~~~d~p~~ 343 (354)
T 2d40_A 331 DSVLFSFSDRPVQ 343 (354)
T ss_dssp EEEEEEEESHHHH
T ss_pred CEEEEEEcCHHHH
Confidence 8888888655443
No 129
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=21.13 E-value=1.1e+02 Score=27.58 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=31.5
Q ss_pred eeEEeCCCCe-e-eecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCee
Q 005173 497 KPRLCTPGTC-P-VREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFC 549 (710)
Q Consensus 497 ~~~~~~kge~-I-~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~f 549 (710)
....+.+|.. . ...-....++++|++|.+.+.. +++ ...+++||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM--END-----QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE--TTE-----EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE--CCE-----EEEeCCCCEE
Confidence 3456788874 2 2222356899999999998864 333 3678999987
No 130
>3ota_A Holo-[acyl-carrier-protein] synthase; structural genomics, center for structural genomics of infec diseases, csgid; HET: COA; 1.85A {Vibrio cholerae o1 biovar el tor} PDB: 3qmn_A*
Probab=20.68 E-value=53 Score=29.19 Aligned_cols=12 Identities=33% Similarity=0.171 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHH
Q 005173 667 QFTSYAAKLAAS 678 (710)
Q Consensus 667 ~~~~~~~~~~~~ 678 (710)
|+..||.||||+
T Consensus 48 ~~~~lA~RfAAK 59 (129)
T 3ota_A 48 QGRFLAKRFAAK 59 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 578899999985
No 131
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=20.62 E-value=1.2e+02 Score=25.79 Aligned_cols=79 Identities=13% Similarity=0.109 Sum_probs=45.9
Q ss_pred eEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEc-
Q 005173 498 PRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAI- 576 (710)
Q Consensus 498 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Al- 576 (710)
...+.+|...-.--....++++|++|.+.+.. +++ ...+++||++--. +. ....+.+.
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~-----~~~l~~Gd~~~i~-------~~-------~~H~~~~~~ 96 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE-----DFPVTKGDLIIIP-------LD-------SEHHVINNN 96 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEEEC-------TT-------CCEEEEECS
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE-----EEEECCCcEEEEC-------CC-------CcEEeEeCC
Confidence 34466666443333456789999999998865 333 3678999976422 11 12234443
Q ss_pred -ceEE--EEEecHHHHHHHHHHhH
Q 005173 577 -TEVE--AFAFVDEDLKFVASQYR 597 (710)
Q Consensus 577 -t~~e--ll~L~~edf~~ll~~~p 597 (710)
++++ ++.++.+-+..++.+.+
T Consensus 97 ~~~~~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 97 QEDFHFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp SSCEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECHHHHHHHHHhcc
Confidence 4444 34567666666655533
No 132
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=20.62 E-value=1.8e+02 Score=25.45 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=30.1
Q ss_pred EEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecc
Q 005173 499 RLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGE 551 (710)
Q Consensus 499 ~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe 551 (710)
..+.||..-.. ...+++++|++|.+++.. +|+ ...+++||.+--
T Consensus 62 ~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~--~g~-----~~~l~~GD~i~~ 105 (133)
T 2pyt_A 62 MQWDNAFFPWT--LNYDEIDMVLEGELHVRH--EGE-----TMIAKAGDVMFI 105 (133)
T ss_dssp EEEEEEEEEEE--CSSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEEE
T ss_pred EEECCCCcccc--CCCCEEEEEEECEEEEEE--CCE-----EEEECCCcEEEE
Confidence 44667733222 246799999999999865 344 357999998753
No 133
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=20.43 E-value=92 Score=33.63 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=39.7
Q ss_pred hhceeEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeec
Q 005173 494 ERLKPRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 494 ~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fG 550 (710)
-.+....+.||..+..--...+++++|++|...+...+.+... ...+++||++-
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 114 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD---SYILEQGHAQK 114 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE---EEEeCCCCEEE
Confidence 4456677899988876655578999999999988765443221 46789999874
No 134
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=20.27 E-value=3.2e+02 Score=26.46 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=42.0
Q ss_pred eEEeCCCCeeeecCCCCCeEEEEEeeEEEEEEecCCceeeeeeEEeCCCCeecchhhhhccCCCCCCCCCCcccEEEEcc
Q 005173 498 PRLCTPGTCPVREEDPVNEMLFIVRGHLDSYTTGGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAIT 577 (710)
Q Consensus 498 ~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~~~~l~~Gd~fGe~~l~~~l~~~~~~~~p~s~~tv~Alt 577 (710)
...+.||...-..- .+++.+|++|.+++.. +++ ...+++||++--.+- ....+++.+
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~~~~p~~--------------~~H~~~n~~ 110 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGE-----TRTLREYDYVYLPAG--------------EKHMLTAKT 110 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSC-----EEEECTTEEEEECTT--------------CCCEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCE-----EEEECCCCEEEECCC--------------CCEEEEeCC
Confidence 34578887654442 7789999999998864 343 367999998743211 123344447
Q ss_pred eEEEEEec
Q 005173 578 EVEAFAFV 585 (710)
Q Consensus 578 ~~ell~L~ 585 (710)
+++++.+.
T Consensus 111 ~~~~l~v~ 118 (246)
T 1sfn_A 111 DARVSVFE 118 (246)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 77777664
No 135
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=20.25 E-value=1.6e+02 Score=30.77 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=35.9
Q ss_pred ceeEEeCCCCeeeecCCCC-CeEEEEEeeEEEEEEe-cCCceeeeeeEEeCCCCeec
Q 005173 496 LKPRLCTPGTCPVREEDPV-NEMLFIVRGHLDSYTT-GGGRTGFFNSCRIGPGDFCG 550 (710)
Q Consensus 496 l~~~~~~kge~I~~eGd~~-~~lyfI~~G~v~v~~~-~~g~~~~~~~~~l~~Gd~fG 550 (710)
+....+.+|...-..-.+. .++++|++|.+++... .+|+.. ...+.+||.+-
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~---~~~l~~GD~~~ 312 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHAR---TFNYQAGDVGY 312 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEE---EEEEESSCEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEE---EEEEcCCCEEE
Confidence 3445678888775444445 8999999999988764 233221 46789999874
Done!